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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005026
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005026
|accession_numbers=CAGE;DRX008411;DRR009283;DRZ000708;DRZ002093;DRZ012058;DRZ013443
|accession_numbers_RNASeq=sRNA-Seq;DRX037151;DRR041517;DRZ007159
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002579
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002579
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.82!64.34!TCF21;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.58!37.16!HOXC5;;chr19:47523058..47523114,+!p1@NPAS1!1.53!32.81!NPAS1;;chr11:46299199..46299233,+!p1@CREB3L1!1.43!129.97!CREB3L1;;chr2:19558373..19558392,-!p1@OSR1!1.43!69.97!OSR1;;chr8:72756637..72756664,-!p3@MSC!1.43!29.44!MSC;;chr18:19749541..19749557,+!p1@GATA6!1.41!76.24!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!1.39!39.73!CREB3L1;;chr18:19749386..19749404,+!p2@GATA6!1.38!32.81!GATA6;;chr9:132427883..132427951,+!p2@PRRX2!1.33!20.59!PRRX2;;chr12:54402745..54402788,+!p1@HOXC8!1.33!20.43!HOXC8;;chr9:132427972..132428056,+!p1@PRRX2!1.26!22.36!PRRX2;;chr9:96717629..96717644,-!p1@BARX1!1.24!16.57!BARX1;;chr6:144329384..144329405,-!p1@PLAGL1!1.20!167.77!PLAGL1;;chr14:62162285..62162296,+!p3@HIF1A!1.18!72.38!HIF1A;;chr8:72756667..72756736,-!p2@MSC!1.18!22.04!MSC;;chr14:62162258..62162269,+!p2@HIF1A!1.15!125.63!HIF1A;;chr8:72756267..72756296,-!p4@MSC!1.14!18.98!MSC;;chr16:86600426..86600441,+!p1@FOXC2!1.13!30.56!FOXC2;;chr1:23885981..23886002,-!p1@ID3!1.12!2122.79!ID3;;chr17:46682321..46682362,-!p1@HOXB6!1.09!11.42!HOXB6;;chr5:72744594..72744609,-!p1@FOXD1!1.05!47.29!FOXD1;;chr12:80085061..80085119,-!p6@PAWR!1.05!16.25!PAWR;;chr8:25902876..25902936,-!p1@EBF2!1.05!10.13!EBF2;;chr18:53068911..53068935,-!p4@TCF4!1.04!11.26!TCF4;;chr7:44143978..44143989,+!p2@AEBP1!1.03!18.02!AEBP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.03!9.81!HOXC5;;chr7:44143925..44143970,+!p1@AEBP1!0.99!202.19!AEBP1;;chr19:50432453..50432468,+!p1@ATF5!0.98!493.66!ATF5;;chr17:1959369..1959388,+!p2@HIC1!0.98!22.84!HIC1;;chr8:72756213..72756243,-!p5@MSC!0.98!11.10!MSC;;chr4:111544219..111544240,-!p1@PITX2!0.98!8.53!PITX2;;chr4:111558135..111558198,-!p2@PITX2!0.97!8.36!PITX2;;chr7:1577899..1577943,+!p3@MAFK!0.97!8.36!MAFK;;chr7:27183263..27183284,-!p2@HOXA5!0.97!8.36!HOXA5;;chr8:49833948..49833973,-!p2@SNAI2!0.96!53.56!SNAI2;;chr14:62213827..62213853,+!p6@HIF1A!0.96!11.58!HIF1A;;chr16:86544113..86544145,+!p1@FOXF1!0.96!10.13!FOXF1;;chr5:139492456..139492489,+!p7@PURA!0.96!8.20!PURA;;chr1:170632285..170632309,+!p1@PRRX1!0.94!8.69!PRRX1;;chr8:72756063..72756125,-!p1@MSC!0.92!15.12!MSC;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.40!HAND2;;chrX:106960180..106960197,-!p2@TSC22D3!0.90!27.83!TSC22D3;;chr15:96874145..96874166,+!p7@NR2F2!0.90!13.83!NR2F2;;chr14:62203595..62203676,+!p4@HIF1A!0.90!13.51!HIF1A;;chr5:72744445..72744466,-!p2@FOXD1!0.90!11.90!FOXD1;;chr9:96717678..96717689,-!p2@BARX1!0.90!6.92!BARX1;;chr2:121493425..121493474,+!p1@GLI2!0.89!15.28!GLI2;;chr11:12696071..12696086,+!p3@TEAD1!0.89!9.01!TEAD1;;chrY:2803415..2803468,+!p1@ZFY!0.89!6.76!ZFY;;chr17:46688334..46688385,-!p1@HOXB7!0.88!9.81!HOXB7;;chr2:8822176..8822196,+!p1@ID2!0.87!960.78!ID2;;chr17:46703687..46703740,-!p1@HOXB9!0.87!6.43!HOXB9;;chr12:54402790..54402805,+!p2@HOXC8!0.87!6.43!HOXC8;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.43!KDM5D;;chr8:49833978..49833996,-!p1@SNAI2!0.86!137.21!SNAI2;;chr6:144289132..144289134,-!p3@PLAGL1!0.86!15.12!PLAGL1;;chr17:46687959..46688007,-!p2@HOXB7!0.86!8.85!HOXB7;;chr7:27183291..27183324,-!p1@HOXA5!0.86!6.27!HOXA5;;chr1:170633058..170633084,+!p5@PRRX1!0.86!6.27!PRRX1;;chr6:19837592..19837621,+!p1@ID4!0.85!39.09!ID4;;chr10:63809013..63809041,+!p3@ARID5B!0.85!35.71!ARID5B;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.75!TWIST2;;chr15:96869255..96869291,+!p6@NR2F2!0.85!11.58!NR2F2;;chr2:119605214..119605230,-!p1@EN1!0.85!6.11!EN1;;chr10:131762504..131762555,-!p1@EBF3!0.85!6.11!EBF3;;chr8:106330656..106330684,+!p1@ZFPM2!0.84!16.25!ZFPM2;;chr17:38498594..38498661,+!p2@RARA!0.83!20.27!RARA;;chr7:27183114..27183138,-!p3@HOXA5!0.83!5.79!HOXA5;;chr5:92918919..92918942,+!p1@NR2F1!0.82!26.86!NR2F1;;chr14:62213758..62213774,+!p8@HIF1A!0.82!7.40!HIF1A;;chr7:27196267..27196311,-!p1@HOXA7!0.82!5.63!HOXA7;;chr17:46622070..46622109,-!p1@HOXB2!0.81!12.87!HOXB2;;chr2:121493492..121493537,+!p2@GLI2!0.81!9.33!GLI2;;chr2:85980951..85981004,+!p1@ATOH8!0.81!9.33!ATOH8;;chr14:62203749..62203798,+!p5@HIF1A!0.81!8.69!HIF1A;;chr17:46621937..46621966,-!p2@HOXB2!0.80!15.28!HOXB2;;chr18:19749517..19749531,+!p3@GATA6!0.80!9.81!GATA6;;chr7:44143997..44144008,+!p3@AEBP1!0.80!6.92!AEBP1;;chr7:27153454..27153469,-!p2@HOXA3!0.80!5.31!HOXA3;;chr12:54393880..54393962,+!p1@HOXC9!0.80!5.31!HOXC9;;chr14:62214151..62214164,+!p11@HIF1A!0.80!5.31!HIF1A;;chr1:170632959..170632987,+!p4@PRRX1!0.79!5.79!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.15!ZNF668;;chr11:46299443..46299459,+!p4@CREB3L1!0.78!4.99!CREB3L1;;chr12:54402729..54402743,+!p3@HOXC8!0.78!4.99!HOXC8;;chr15:96874244..96874259,+!p5@NR2F2!0.77!12.71!NR2F2;;chr4:174451370..174451387,-!p1@HAND2!0.77!4.83!HAND2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.76!52.28!GLIS2;;chr7:150945754..150945789,-!p2@SMARCD3!0.76!15.92!SMARCD3;;chr14:62162224..62162254,+!p1@HIF1A!0.75!747.65!HIF1A;;chr12:80085120..80085156,-!p14@PAWR!0.75!4.66!PAWR;;chr7:27192185..27192209,-!p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AP1!0.17!0.48!DRAP1;;chr11:8040739..8040815,+!p4@TUB!0.17!0.48!TUB;;chr12:124496534..124496544,+!p6@ZNF664!0.17!0.48!ZNF664;;chr12:3068668..3068689,+!p7@TEAD4!0.17!0.48!TEAD4;;chr12:54426831..54426836,+!p10@HOXC5!0.17!0.48!HOXC5;;chr12:57911081..57911085,-!p2@DDIT3!0.17!0.48!DDIT3;;chr12:66357214..66357233,+!p13@HMGA2!0.17!0.48!HMGA2;;chr12:96588425..96588432,+!p8@ELK3!0.17!0.48!ELK3;;chr13:45151548..45151569,-!p9@TSC22D1!0.17!0.48!TSC22D1;;chr13:46549536..46549554,-!p21@ZC3H13!0.17!0.48!ZC3H13;;chr14:21567009..21567025,-!p9@ZNF219!0.17!0.48!ZNF219;;chr5:158527104..158527135,-!p4@EBF1!0.17!0.48!EBF1;;chr5:92918768..92918783,+!p8@NR2F1!0.17!0.48!NR2F1;;chr6:126135900..126135924,+!p22@NCOA7!0.17!0.48!NCOA7;;chr6:126210634..126210644,+!p17@NCOA7!0.17!0.48!NCOA7;;chr6:21594206..21594221,+!p15@SOX4!0.17!0.48!SOX4;;chr6:27356595..27356611,+!p6@ZNF391!0.17!0.48!ZNF391;;chr7:104752472..104752486,+!p15@MLL5!0.17!0.48!MLL5;;chr7:137565269..137565282,-!p16@CREB3L2!0.17!0.48!CREB3L2;;chr7:14029034..14029087,-!p5@ETV1!0.17!0.48!ETV1;;chr7:150945740..150945750,-!p7@SMARCD3!0.17!0.48!SMARCD3;;chr7:27142290..27142310,-!p1@HOXA2!0.17!0.48!HOXA2;;chr7:27153443..27153450,-!p8@HOXA3!0.17!0.48!HOXA3;;chr7:27153590..27153608,-!p7@HOXA3!0.17!0.48!HOXA3;;chr7:27170324..27170335,-!p7@HOXA4!0.17!0.48!HOXA4;;chr7:96654026..96654061,-!p2@DLX5!0.17!0.48!DLX5;;chr7:96654133..96654150,-!p1@DLX5!0.17!0.48!DLX5;;chr8:106330515..106330525,+!p6@ZFPM2!0.17!0.48!ZFPM2;;chr8:106331769..106331772,+!p8@ZFPM2!0.17!0.48!ZFPM2;;chr8:116681845..116681859,-!p18@TRPS1!0.17!0.48!TRPS1;;chr8:128750164..128750173,+!p24@MYC!0.17!0.48!MYC;;chr8:72755203..72755239,-!p10@MSC!0.17!0.48!MSC;;chr8:93115274..93115323,-!p4@RUNX1T1!0.17!0.48!RUNX1T1;;chr8:93115508..93115552,-!p6@RUNX1T1!0.17!0.48!RUNX1T1;;chr9:110250629..110250642,-!p7@KLF4!0.17!0.48!KLF4;;chr9:115819058..115819082,-!p2@ZFP37!0.17!0.48!ZFP37;;chr9:14083091..14083096,-!p12@NFIB!0.17!0.48!NFIB;;chrX:153305787..153305807,-!p3@MECP2!0.17!0.48!MECP2;;chr9:16727978..16728010,-!p6@BNC2!0.17!0.48!BNC2;;chrX:24167086..24167111,+!p4@ZFX!0.17!0.48!ZFX;;chr9:32551047..32551066,-!p5@TOPORS!0.17!0.48!TOPORS;;chrX:153305741..153305753,-!p4@MECP2!0.17!0.48!MECP2;;chr9:22447422..22447483,+!p1@DMRTA1!0.17!0.48!DMRTA1;;chr2:100721328..100721348,-!p4@AFF3!0.17!0.48!AFF3;;chr2:113057501..113057529,+!p4@ZC3H6!0.17!0.48!ZC3H6;;chr2:119605233..119605245,-!p8@EN1!0.17!0.48!EN1;;chr2:172967242..172967265,-!p2@DLX2!0.17!0.48!DLX2;;chr2:191885737..191885750,-!p4@STAT1!0.17!0.48!STAT1;;chr2:191906489..191906517,-!p6@STAT4!0.17!0.48!STAT4;;chr2:70165338..70165355,+!p10@MXD1!0.17!0.48!MXD1;;chr2:70166128..70166141,+!p9@MXD1!0.17!0.48!MXD1;;chr2:85981271..85981289,+!p9@ATOH8!0.17!0.48!ATOH8;;chr2:96012757..96012779,+!p8@KCNIP3!0.17!0.48!KCNIP3;;chr3:107318229..107318239,+!p17@BBX!0.17!0.48!BBX;;chr3:141719209..141719215,-!p10@TFDP2!0.17!0.48!TFDP2;;chr3:193854202..193854232,+!p2@HES1!0.17!0.48!HES1;;chr3:39196049..39196062,-!p5@CSRNP1!0.17!0.48!CSRNP1;;chr3:71114563..71114584,-!p49@FOXP1!0.17!0.48!FOXP1;;chr4:121843402..121843416,+!p4@PRDM5!0.17!0.48!PRDM5;;chr4:149363494..149363543,-!p1@NR3C2!0.17!0.48!NR3C2;;chr4:149366111..149366128,-!p7@NR3C2!0.17!0.48!NR3C2;;
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AP1!0.17!0.48!DRAP1;;chr11:8040739..8040815,+!p4@TUB!0.17!0.48!TUB;;chr12:124496534..124496544,+!p6@ZNF664!0.17!0.48!ZNF664;;chr12:3068668..3068689,+!p7@TEAD4!0.17!0.48!TEAD4;;chr12:54426831..54426836,+!p10@HOXC5!0.17!0.48!HOXC5;;chr12:57911081..57911085,-!p2@DDIT3!0.17!0.48!DDIT3;;chr12:66357214..66357233,+!p13@HMGA2!0.17!0.48!HMGA2;;chr12:96588425..96588432,+!p8@ELK3!0.17!0.48!ELK3;;chr13:45151548..45151569,-!p9@TSC22D1!0.17!0.48!TSC22D1;;chr13:46549536..46549554,-!p21@ZC3H13!0.17!0.48!ZC3H13;;chr14:21567009..21567025,-!p9@ZNF219!0.17!0.48!ZNF219;;chr5:158527104..158527135,-!p4@EBF1!0.17!0.48!EBF1;;chr5:92918768..92918783,+!p8@NR2F1!0.17!0.48!NR2F1;;chr6:126135900..126135924,+!p22@NCOA7!0.17!0.48!NCOA7;;chr6:126210634..126210644,+!p17@NCOA7!0.17!0.48!NCOA7;;chr6:21594206..21594221,+!p15@SOX4!0.17!0.48!SOX4;;chr6:27356595..27356611,+!p6@ZNF391!0.17!0.48!ZNF391;;chr7:104752472..104752486,+!p15@MLL5!0.17!0.48!MLL5;;chr7:137565269..137565282,-!p16@CREB3L2!0.17!0.48!CREB3L2;;chr7:14029034..14029087,-!p5@ETV1!0.17!0.48!ETV1;;chr7:150945740..150945750,-!p7@SMARCD3!0.17!0.48!SMARCD3;;chr7:27142290..27142310,-!p1@HOXA2!0.17!0.48!HOXA2;;chr7:27153443..27153450,-!p8@HOXA3!0.17!0.48!HOXA3;;chr7:27153590..27153608,-!p7@HOXA3!0.17!0.48!HOXA3;;chr7:27170324..27170335,-!p7@HOXA4!0.17!0.48!HOXA4;;chr7:96654026..96654061,-!p2@DLX5!0.17!0.48!DLX5;;chr7:96654133..96654150,-!p1@DLX5!0.17!0.48!DLX5;;chr8:106330515..106330525,+!p6@ZFPM2!0.17!0.48!ZFPM2;;chr8:106331769..106331772,+!p8@ZFPM2!0.17!0.48!ZFPM2;;chr8:116681845..116681859,-!p18@TRPS1!0.17!0.48!TRPS1;;chr8:128750164..128750173,+!p24@MYC!0.17!0.48!MYC;;chr8:72755203..72755239,-!p10@MSC!0.17!0.48!MSC;;chr8:93115274..93115323,-!p4@RUNX1T1!0.17!0.48!RUNX1T1;;chr8:93115508..93115552,-!p6@RUNX1T1!0.17!0.48!RUNX1T1;;chr9:110250629..110250642,-!p7@KLF4!0.17!0.48!KLF4;;chr9:115819058..115819082,-!p2@ZFP37!0.17!0.48!ZFP37;;chr9:14083091..14083096,-!p12@NFIB!0.17!0.48!NFIB;;chrX:153305787..153305807,-!p3@MECP2!0.17!0.48!MECP2;;chr9:16727978..16728010,-!p6@BNC2!0.17!0.48!BNC2;;chrX:24167086..24167111,+!p4@ZFX!0.17!0.48!ZFX;;chr9:32551047..32551066,-!p5@TOPORS!0.17!0.48!TOPORS;;chrX:153305741..153305753,-!p4@MECP2!0.17!0.48!MECP2;;chr9:22447422..22447483,+!p1@DMRTA1!0.17!0.48!DMRTA1;;chr2:100721328..100721348,-!p4@AFF3!0.17!0.48!AFF3;;chr2:113057501..113057529,+!p4@ZC3H6!0.17!0.48!ZC3H6;;chr2:119605233..119605245,-!p8@EN1!0.17!0.48!EN1;;chr2:172967242..172967265,-!p2@DLX2!0.17!0.48!DLX2;;chr2:191885737..191885750,-!p4@STAT1!0.17!0.48!STAT1;;chr2:191906489..191906517,-!p6@STAT4!0.17!0.48!STAT4;;chr2:70165338..70165355,+!p10@MXD1!0.17!0.48!MXD1;;chr2:70166128..70166141,+!p9@MXD1!0.17!0.48!MXD1;;chr2:85981271..85981289,+!p9@ATOH8!0.17!0.48!ATOH8;;chr2:96012757..96012779,+!p8@KCNIP3!0.17!0.48!KCNIP3;;chr3:107318229..107318239,+!p17@BBX!0.17!0.48!BBX;;chr3:141719209..141719215,-!p10@TFDP2!0.17!0.48!TFDP2;;chr3:193854202..193854232,+!p2@HES1!0.17!0.48!HES1;;chr3:39196049..39196062,-!p5@CSRNP1!0.17!0.48!CSRNP1;;chr3:71114563..71114584,-!p49@FOXP1!0.17!0.48!FOXP1;;chr4:121843402..121843416,+!p4@PRDM5!0.17!0.48!PRDM5;;chr4:149363494..149363543,-!p1@NR3C2!0.17!0.48!NR3C2;;chr4:149366111..149366128,-!p7@NR3C2!0.17!0.48!NR3C2;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002579;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor3.CNhs12013.11403-118D8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor3.CNhs12013.11403-118D8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor3.CNhs12013.11403-118D8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor3.CNhs12013.11403-118D8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor3.CNhs12013.11403-118D8.hg38.nobarcode.ctss.bed.gz
|id=FF:11403-118D8
|id=FF:11403-118D8
|is_a=EFO:0002091;;FF:0000140
|is_a=EFO:0002091;;FF:0000140
|is_obsolete=
|is_obsolete=
|library_id=CNhs12013
|library_id_phase_based=2:CNhs12013
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11403
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.ACTTGA.11403
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11403
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.ACTTGA.11403
|name=Preadipocyte - omental, donor3
|name=Preadipocyte - omental, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12013,LSID837,release011,COMPLETED
|profile_hcage=CNhs12013,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|profile_srnaseq=SRhi10010,,,
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Line 61: Line 82:
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|sample_cell_line=
Line 83: Line 106:
|top_motifs=XBP1:2.3262441576;UFEwm:2.30924075087;NKX2-2,8:2.13791455878;HOX{A5,B5}:2.10002597686;HMGA1,2:2.00892235205;TEF:1.95266848537;HES1:1.94942214339;TAL1_TCF{3,4,12}:1.85828291313;EVI1:1.83720247056;GLI1..3:1.82384484982;ESR1:1.78967256406;FOXL1:1.75784958966;RXRA_VDR{dimer}:1.65776019159;NKX3-1:1.65534405573;NFE2L1:1.56964099266;MAFB:1.50775101515;ZNF384:1.4951655917;TEAD1:1.47429084901;PAX1,9:1.47071112897;MYBL2:1.36513460449;SRF:1.3014432552;ALX4:1.26938600947;NR3C1:1.24753035115;IKZF1:1.22014711287;GZF1:1.1948695475;MTE{core}:1.19214504811;NFATC1..3:1.15985874597;RXR{A,B,G}:1.14614236796;GCM1,2:1.12377464592;TBX4,5:1.11311805615;ATF6:1.11089905848;HMX1:1.10669763456;KLF4:1.10616314585;TP53:1.10498749687;EN1,2:1.1025735588;ZNF423:1.09262961982;HIF1A:1.09102604716;GATA4:1.03622932331;TFAP4:0.999589543902;NR6A1:0.99492089808;AIRE:0.970389331273;HOX{A6,A7,B6,B7}:0.959928517931;TFAP2B:0.9435417106;DBP:0.918529288132;FOXA2:0.893517961785;HOX{A4,D4}:0.820793717325;ARID5B:0.812438982031;SMAD1..7,9:0.804714699137;POU6F1:0.801488892352;HSF1,2:0.77361819635;NKX2-1,4:0.773297949342;HIC1:0.742550603855;HLF:0.741215845326;EBF1:0.737959730163;MAZ:0.704524785559;GTF2A1,2:0.689560751188;TLX1..3_NFIC{dimer}:0.663065941008;LHX3,4:0.611862490466;ZNF148:0.555797550045;PAX4:0.530775035683;HAND1,2:0.527250411013;GTF2I:0.5144786405;SPZ1:0.510029809885;NFIX:0.487460446919;TFAP2{A,C}:0.480083538845;NANOG{mouse}:0.474915356201;ZNF238:0.441159650554;TOPORS:0.436084145382;ZBTB16:0.424696624999;SOX17:0.378132459867;PRDM1:0.362721052423;PATZ1:0.339612634566;FOXO1,3,4:0.332020842313;ZIC1..3:0.300934505017;XCPE1{core}:0.291792080199;MZF1:0.286018033498;GFI1B:0.270417714502;TFCP2:0.267994512528;NHLH1,2:0.259265910248;NKX3-2:0.244402314094;ONECUT1,2:0.240033487978;ZBTB6:0.216764639227;HOXA9_MEIS1:0.210564358694;EGR1..3:0.205922816758;bHLH_family:0.202611069194;PAX5:0.152235098858;SOX5:0.151311123784;ADNP_IRX_SIX_ZHX:0.145456307537;REST:0.14338229804;POU3F1..4:0.126173057738;MTF1:0.118369348188;ELK1,4_GABP{A,B1}:0.0825864778317;CDC5L:0.0684711632145;MYFfamily:0.0559556652332;AR:0.0553094553005;MYB:0.0241295956748;RREB1:0.0144223529341;NFE2L2:0.0100195618013;MEF2{A,B,C,D}:0.00617915570103;TBP:-0.00397378983435;PPARG:-0.00960236044254;CEBPA,B_DDIT3:-0.00984266558613;PITX1..3:-0.0217085995011;CREB1:-0.0262139338753;AHR_ARNT_ARNT2:-0.0278877864838;PAX8:-0.0613721066674;ZFP161:-0.0701943055959;BACH2:-0.0727838469948;IKZF2:-0.0860448051772;STAT5{A,B}:-0.0978037358425;HNF1A:-0.105908623663;MED-1{core}:-0.155458518547;POU5F1:-0.170015208543;STAT2,4,6:-0.188925886613;ZNF143:-0.204132001956;SREBF1,2:-0.218828107977;TFDP1:-0.223777174975;SOX2:-0.242633979395;FOX{D1,D2}:-0.2527010257;FOX{I1,J2}:-0.258536225484;FOXP3:-0.269376632593;EP300:-0.273223141349;STAT1,3:-0.27849129045;PAX6:-0.290612121568;NRF1:-0.304461378606;NFIL3:-0.308991190138;CRX:-0.317059566239;TGIF1:-0.329932534188;NKX6-1,2:-0.340893170086;FOS_FOS{B,L1}_JUN{B,D}:-0.357910068067;RFX1:-0.391663308566;IRF1,2:-0.423801129009;YY1:-0.450563222994;PAX3,7:-0.45089539951;HBP1_HMGB_SSRP1_UBTF:-0.454696484021;FOSL2:-0.472139706927;FOXN1:-0.485680106611;ATF5_CREB3:-0.491908922544;PAX2:-0.494036562866;SP1:-0.496874397164;FOXM1:-0.497280273775;ESRRA:-0.506237976639;OCT4_SOX2{dimer}:-0.509944176243;HNF4A_NR2F1,2:-0.533865328356;RUNX1..3:-0.55440517475;JUN:-0.555907625935;SPI1:-0.563646626233;NFE2:-0.594698667005;ATF4:-0.597143864337;ATF2:-0.607290367736;NFKB1_REL_RELA:-0.614657624088;FOXP1:-0.628026575315;ETS1,2:-0.629410696867;BPTF:-0.64921626679;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.659341757867;SNAI1..3:-0.684698426905;TLX2:-0.687217597049;ELF1,2,4:-0.692442788849;GATA6:-0.69567219994;LMO2:-0.697102518738;DMAP1_NCOR{1,2}_SMARC:-0.714682307665;SPIB:-0.776990835001;BREu{core}:-0.790979798967;ALX1:-0.822608361281;IRF7:-0.858700679198;SOX{8,9,10}:-0.901133812847;ZEB1:-0.907892625339;PRRX1,2:-0.92977777896;FOX{F1,F2,J1}:-0.935275127107;T:-0.979215838079;FOXQ1:-1.04276317199;NR5A1,2:-1.04356475657;LEF1_TCF7_TCF7L1,2:-1.04711419571;POU1F1:-1.05824922924;VSX1,2:-1.06852063967;NR1H4:-1.10776317275;RFX2..5_RFXANK_RFXAP:-1.11306109923;MYOD1:-1.14547608669;CUX2:-1.14990610413;GFI1:-1.15221636177;E2F1..5:-1.1788446564;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.19611268147;NKX2-3_NKX2-5:-1.25790060315;NFY{A,B,C}:-1.29657961934;FOXD3:-1.33129547846;NANOG:-1.47053166956;CDX1,2,4:-1.55651363434;RORA:-1.5599123274;PBX1:-1.87577131349;PDX1:-2.18044537467;RBPJ:-2.27486067639;POU2F1..3:-2.45487521993
|top_motifs=XBP1:2.3262441576;UFEwm:2.30924075087;NKX2-2,8:2.13791455878;HOX{A5,B5}:2.10002597686;HMGA1,2:2.00892235205;TEF:1.95266848537;HES1:1.94942214339;TAL1_TCF{3,4,12}:1.85828291313;EVI1:1.83720247056;GLI1..3:1.82384484982;ESR1:1.78967256406;FOXL1:1.75784958966;RXRA_VDR{dimer}:1.65776019159;NKX3-1:1.65534405573;NFE2L1:1.56964099266;MAFB:1.50775101515;ZNF384:1.4951655917;TEAD1:1.47429084901;PAX1,9:1.47071112897;MYBL2:1.36513460449;SRF:1.3014432552;ALX4:1.26938600947;NR3C1:1.24753035115;IKZF1:1.22014711287;GZF1:1.1948695475;MTE{core}:1.19214504811;NFATC1..3:1.15985874597;RXR{A,B,G}:1.14614236796;GCM1,2:1.12377464592;TBX4,5:1.11311805615;ATF6:1.11089905848;HMX1:1.10669763456;KLF4:1.10616314585;TP53:1.10498749687;EN1,2:1.1025735588;ZNF423:1.09262961982;HIF1A:1.09102604716;GATA4:1.03622932331;TFAP4:0.999589543902;NR6A1:0.99492089808;AIRE:0.970389331273;HOX{A6,A7,B6,B7}:0.959928517931;TFAP2B:0.9435417106;DBP:0.918529288132;FOXA2:0.893517961785;HOX{A4,D4}:0.820793717325;ARID5B:0.812438982031;SMAD1..7,9:0.804714699137;POU6F1:0.801488892352;HSF1,2:0.77361819635;NKX2-1,4:0.773297949342;HIC1:0.742550603855;HLF:0.741215845326;EBF1:0.737959730163;MAZ:0.704524785559;GTF2A1,2:0.689560751188;TLX1..3_NFIC{dimer}:0.663065941008;LHX3,4:0.611862490466;ZNF148:0.555797550045;PAX4:0.530775035683;HAND1,2:0.527250411013;GTF2I:0.5144786405;SPZ1:0.510029809885;NFIX:0.487460446919;TFAP2{A,C}:0.480083538845;NANOG{mouse}:0.474915356201;ZNF238:0.441159650554;TOPORS:0.436084145382;ZBTB16:0.424696624999;SOX17:0.378132459867;PRDM1:0.362721052423;PATZ1:0.339612634566;FOXO1,3,4:0.332020842313;ZIC1..3:0.300934505017;XCPE1{core}:0.291792080199;MZF1:0.286018033498;GFI1B:0.270417714502;TFCP2:0.267994512528;NHLH1,2:0.259265910248;NKX3-2:0.244402314094;ONECUT1,2:0.240033487978;ZBTB6:0.216764639227;HOXA9_MEIS1:0.210564358694;EGR1..3:0.205922816758;bHLH_family:0.202611069194;PAX5:0.152235098858;SOX5:0.151311123784;ADNP_IRX_SIX_ZHX:0.145456307537;REST:0.14338229804;POU3F1..4:0.126173057738;MTF1:0.118369348188;ELK1,4_GABP{A,B1}:0.0825864778317;CDC5L:0.0684711632145;MYFfamily:0.0559556652332;AR:0.0553094553005;MYB:0.0241295956748;RREB1:0.0144223529341;NFE2L2:0.0100195618013;MEF2{A,B,C,D}:0.00617915570103;TBP:-0.00397378983435;PPARG:-0.00960236044254;CEBPA,B_DDIT3:-0.00984266558613;PITX1..3:-0.0217085995011;CREB1:-0.0262139338753;AHR_ARNT_ARNT2:-0.0278877864838;PAX8:-0.0613721066674;ZFP161:-0.0701943055959;BACH2:-0.0727838469948;IKZF2:-0.0860448051772;STAT5{A,B}:-0.0978037358425;HNF1A:-0.105908623663;MED-1{core}:-0.155458518547;POU5F1:-0.170015208543;STAT2,4,6:-0.188925886613;ZNF143:-0.204132001956;SREBF1,2:-0.218828107977;TFDP1:-0.223777174975;SOX2:-0.242633979395;FOX{D1,D2}:-0.2527010257;FOX{I1,J2}:-0.258536225484;FOXP3:-0.269376632593;EP300:-0.273223141349;STAT1,3:-0.27849129045;PAX6:-0.290612121568;NRF1:-0.304461378606;NFIL3:-0.308991190138;CRX:-0.317059566239;TGIF1:-0.329932534188;NKX6-1,2:-0.340893170086;FOS_FOS{B,L1}_JUN{B,D}:-0.357910068067;RFX1:-0.391663308566;IRF1,2:-0.423801129009;YY1:-0.450563222994;PAX3,7:-0.45089539951;HBP1_HMGB_SSRP1_UBTF:-0.454696484021;FOSL2:-0.472139706927;FOXN1:-0.485680106611;ATF5_CREB3:-0.491908922544;PAX2:-0.494036562866;SP1:-0.496874397164;FOXM1:-0.497280273775;ESRRA:-0.506237976639;OCT4_SOX2{dimer}:-0.509944176243;HNF4A_NR2F1,2:-0.533865328356;RUNX1..3:-0.55440517475;JUN:-0.555907625935;SPI1:-0.563646626233;NFE2:-0.594698667005;ATF4:-0.597143864337;ATF2:-0.607290367736;NFKB1_REL_RELA:-0.614657624088;FOXP1:-0.628026575315;ETS1,2:-0.629410696867;BPTF:-0.64921626679;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.659341757867;SNAI1..3:-0.684698426905;TLX2:-0.687217597049;ELF1,2,4:-0.692442788849;GATA6:-0.69567219994;LMO2:-0.697102518738;DMAP1_NCOR{1,2}_SMARC:-0.714682307665;SPIB:-0.776990835001;BREu{core}:-0.790979798967;ALX1:-0.822608361281;IRF7:-0.858700679198;SOX{8,9,10}:-0.901133812847;ZEB1:-0.907892625339;PRRX1,2:-0.92977777896;FOX{F1,F2,J1}:-0.935275127107;T:-0.979215838079;FOXQ1:-1.04276317199;NR5A1,2:-1.04356475657;LEF1_TCF7_TCF7L1,2:-1.04711419571;POU1F1:-1.05824922924;VSX1,2:-1.06852063967;NR1H4:-1.10776317275;RFX2..5_RFXANK_RFXAP:-1.11306109923;MYOD1:-1.14547608669;CUX2:-1.14990610413;GFI1:-1.15221636177;E2F1..5:-1.1788446564;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.19611268147;NKX2-3_NKX2-5:-1.25790060315;NFY{A,B,C}:-1.29657961934;FOXD3:-1.33129547846;NANOG:-1.47053166956;CDX1,2,4:-1.55651363434;RORA:-1.5599123274;PBX1:-1.87577131349;PDX1:-2.18044537467;RBPJ:-2.27486067639;POU2F1..3:-2.45487521993
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11403-118D8;search_select_hide=table117:FF:11403-118D8
}}
}}

Latest revision as of 17:58, 4 June 2020

Name:Preadipocyte - omental, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12013
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueomentum
dev stage34 years old adult
sexmale
age34
cell typepreadipocyte
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005026
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12013 CAGE DRX008411 DRR009283
Accession ID Hg19

Library idBAMCTSS
CNhs12013 DRZ000708 DRZ002093
Accession ID Hg38

Library idBAMCTSS
CNhs12013 DRZ012058 DRZ013443
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005026
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.ACTTGA sRNA-Seq DRX037151 DRR041517
Accession ID Hg19

Library idBAMCTSS
SRhi10010.ACTTGA DRZ007159


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.209
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.39
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1.071
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0648
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.121
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.129
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.328
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.379
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.576
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.171
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.121
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0648
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.442
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.959
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.039
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.533
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.881
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.5
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.328
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.328
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.657
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.701
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.065
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.871
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.137
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0342
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.971
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12013

Jaspar motifP-value
MA0002.20.0288
MA0003.10.723
MA0004.10.162
MA0006.10.137
MA0007.10.914
MA0009.10.195
MA0014.10.0729
MA0017.10.258
MA0018.22.10635e-4
MA0019.10.971
MA0024.18.17721e-7
MA0025.13.29764e-4
MA0027.10.92
MA0028.10.146
MA0029.10.475
MA0030.10.283
MA0031.10.195
MA0035.20.0921
MA0038.10.00199
MA0039.23.77115e-4
MA0040.10.445
MA0041.10.93
MA0042.10.907
MA0043.10.00101
MA0046.10.127
MA0047.20.318
MA0048.10.126
MA0050.12.05045e-5
MA0051.10.00286
MA0052.10.0573
MA0055.10.89
MA0057.10.754
MA0058.10.0383
MA0059.10.592
MA0060.13.21972e-12
MA0061.13.79438e-4
MA0062.21.28988e-5
MA0065.20.143
MA0066.10.853
MA0067.10.0232
MA0068.10.652
MA0069.10.0438
MA0070.10.798
MA0071.10.973
MA0072.10.193
MA0073.10.781
MA0074.10.525
MA0076.10.012
MA0077.10.908
MA0078.10.805
MA0079.20.576
MA0080.23.95729e-7
MA0081.10.01
MA0083.10.032
MA0084.10.546
MA0087.10.71
MA0088.10.108
MA0090.14.34843e-5
MA0091.10.0601
MA0092.10.0868
MA0093.10.126
MA0099.22.10903e-5
MA0100.10.421
MA0101.17.08772e-6
MA0102.20.0435
MA0103.10.00842
MA0104.20.00223
MA0105.10.0031
MA0106.10.253
MA0107.15.08964e-6
MA0108.20.871
MA0111.10.285
MA0112.20.137
MA0113.10.674
MA0114.10.0961
MA0115.10.0437
MA0116.10.689
MA0117.10.35
MA0119.10.145
MA0122.10.226
MA0124.10.0113
MA0125.10.249
MA0131.10.365
MA0135.10.196
MA0136.16.17955e-12
MA0137.20.174
MA0138.20.526
MA0139.10.526
MA0140.10.382
MA0141.10.529
MA0142.10.085
MA0143.10.778
MA0144.10.836
MA0145.10.614
MA0146.10.482
MA0147.10.0292
MA0148.10.549
MA0149.10.531
MA0150.10.013
MA0152.10.0407
MA0153.10.838
MA0154.10.467
MA0155.10.301
MA0156.12.85434e-8
MA0157.10.374
MA0159.10.602
MA0160.10.0287
MA0162.10.2
MA0163.10.133
MA0164.10.277
MA0258.10.628
MA0259.10.206



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12013

Novel motifP-value
10.787
100.902
1000.994
1010.39
1020.141
1030.802
1040.863
1050.0111
1060.194
1070.246
1080.189
1090.948
110.721
1100.635
1110.632
1120.602
1130.509
1140.142
1150.0102
1160.0218
1170.73
1180.285
1190.672
120.562
1200.677
1210.419
1220.244
1230.0579
1240.239
1250.766
1260.287
1270.289
1280.362
1290.622
130.39
1300.335
1310.675
1320.524
1330.722
1340.736
1350.795
1360.423
1370.536
1380.953
1390.0708
140.163
1400.361
1410.618
1420.645
1430.658
1440.48
1450.337
1460.309
1470.0985
1480.765
1490.00262
150.734
1500.414
1510.82
1520.0182
1530.608
1540.68
1550.0107
1560.57
1570.48
1580.0539
1590.816
160.0234
1600.747
1610.403
1620.925
1630.328
1640.052
1650.708
1660.0781
1670.916
1680.723
1690.197
170.595
180.156
190.0219
20.446
200.571
210.461
220.607
230.388
240.0913
250.224
260.885
270.854
280.177
290.881
30.771
300.846
310.618
324.34948e-17
330.594
340.853
350.924
360.0112
370.147
380.37
390.38
40.87
400.139
410.54
420.364
430.967
440.382
450.612
460.97
470.962
480.737
490.671
50.69
500.901
510.637
520.83
530.0895
540.716
550.128
560.488
570.845
580.187
590.511
60.367
600.989
610.515
620.53
630.614
640.331
650.749
660.101
670.251
680.446
690.743
70.197
700.544
710.899
720.527
730.00421
740.285
750.701
760.809
770.0782
780.37
790.00423
80.365
800.0959
810.599
820.383
830.232
840.319
850.0548
860.413
870.409
880.998
890.174
90.828
900.911
910.993
920.133
930.468
940.894
950.702
960.776
970.424
980.496
990.124



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12013


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002579 (omentum preadipocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003688 (omentum)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0000042 (serous membrane)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002417 (abdominal segment of trunk)
0002358 (peritoneum)
0000916 (abdomen)
0003684 (abdominal cavity)
0001178 (visceral peritoneum)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000140 (human omentum preadipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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