FF:10065-101I2: Difference between revisions

Latest revision as of 12:19, 3 June 2020

Name:	skin, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11774
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	26 weeks fetus
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	A507299
catalog number	Cat:RtHFN: Skin
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005324

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11774		CAGE		DRX008723		DRR009595

Accession ID Hg19

Library id		BAM		CTSS
CNhs11774		DRZ001020		DRZ002405

Accession ID Hg38

Library id		BAM		CTSS
CNhs11774		DRZ012370		DRZ013755

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0556
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.043
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.39
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.295
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.73
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0.295
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0381
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.163
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0324
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.172
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.415
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.172
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.111
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0.172
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.295
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	1.411
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.283
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.187
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.39
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.469
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.126
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.172
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.123
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.197
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.295
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.172
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.172
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00988
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.121
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0847
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.535
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.39
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	1.309
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.172
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.129
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.343
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.39
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	1.102
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.172
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11774

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	7.16818e-5
MA0003.1	MA0003.1	0.999
MA0004.1	MA0004.1	0.00628
MA0006.1	MA0006.1	0.577
MA0007.1	MA0007.1	0.0713
MA0009.1	MA0009.1	0.259
MA0014.1	MA0014.1	0.201
MA0017.1	MA0017.1	0.119
MA0018.2	MA0018.2	0.063
MA0019.1	MA0019.1	0.783
MA0024.1	MA0024.1	0.879
MA0025.1	MA0025.1	0.0122
MA0027.1	MA0027.1	0.475
MA0028.1	MA0028.1	1.10923e-6
MA0029.1	MA0029.1	0.285
MA0030.1	MA0030.1	0.882
MA0031.1	MA0031.1	0.512
MA0035.2	MA0035.2	0.125
MA0038.1	MA0038.1	0.684
MA0039.2	MA0039.2	0.414
MA0040.1	MA0040.1	0.545
MA0041.1	MA0041.1	0.583
MA0042.1	MA0042.1	0.719
MA0043.1	MA0043.1	0.00886
MA0046.1	MA0046.1	0.107
MA0047.2	MA0047.2	0.6
MA0048.1	MA0048.1	0.103
MA0050.1	MA0050.1	8.58037e-4
MA0051.1	MA0051.1	0.00507
MA0052.1	MA0052.1	4.8915e-13
MA0055.1	MA0055.1	0.019
MA0057.1	MA0057.1	0.818
MA0058.1	MA0058.1	6.12061e-4
MA0059.1	MA0059.1	0.00105
MA0060.1	MA0060.1	0.142
MA0061.1	MA0061.1	7.62777e-8
MA0062.2	MA0062.2	1.08599e-13
MA0065.2	MA0065.2	0.036
MA0066.1	MA0066.1	0.12
MA0067.1	MA0067.1	0.00897
MA0068.1	MA0068.1	3.5306e-4
MA0069.1	MA0069.1	0.866
MA0070.1	MA0070.1	0.428
MA0071.1	MA0071.1	0.491
MA0072.1	MA0072.1	0.23
MA0073.1	MA0073.1	0.566
MA0074.1	MA0074.1	0.304
MA0076.1	MA0076.1	7.46567e-8
MA0077.1	MA0077.1	0.752
MA0078.1	MA0078.1	0.422
MA0079.2	MA0079.2	0.431
MA0080.2	MA0080.2	3.97192e-8
MA0081.1	MA0081.1	0.0052
MA0083.1	MA0083.1	0.2
MA0084.1	MA0084.1	0.0298
MA0087.1	MA0087.1	0.0883
MA0088.1	MA0088.1	0.0356
MA0090.1	MA0090.1	0.0519
MA0091.1	MA0091.1	0.281
MA0092.1	MA0092.1	0.724
MA0093.1	MA0093.1	0.00685
MA0099.2	MA0099.2	2.50557e-24
MA0100.1	MA0100.1	0.205
MA0101.1	MA0101.1	8.68351e-7
MA0102.2	MA0102.2	0.0525
MA0103.1	MA0103.1	0.935
MA0104.2	MA0104.2	1.69086e-4
MA0105.1	MA0105.1	4.46982e-9
MA0106.1	MA0106.1	0.135
MA0107.1	MA0107.1	1.35805e-6
MA0108.2	MA0108.2	4.68908e-23
MA0111.1	MA0111.1	0.595
MA0112.2	MA0112.2	0.596
MA0113.1	MA0113.1	0.451
MA0114.1	MA0114.1	0.0332
MA0115.1	MA0115.1	0.0922
MA0116.1	MA0116.1	1.18645e-4
MA0117.1	MA0117.1	0.146
MA0119.1	MA0119.1	0.72
MA0122.1	MA0122.1	0.634
MA0124.1	MA0124.1	0.667
MA0125.1	MA0125.1	0.365
MA0131.1	MA0131.1	0.455
MA0135.1	MA0135.1	0.37
MA0136.1	MA0136.1	3.49468e-13
MA0137.2	MA0137.2	0.859
MA0138.2	MA0138.2	0.0428
MA0139.1	MA0139.1	0.00871
MA0140.1	MA0140.1	0.022
MA0141.1	MA0141.1	0.051
MA0142.1	MA0142.1	0.0432
MA0143.1	MA0143.1	0.413
MA0144.1	MA0144.1	0.644
MA0145.1	MA0145.1	0.359
MA0146.1	MA0146.1	0.239
MA0147.1	MA0147.1	8.41587e-5
MA0148.1	MA0148.1	0.786
MA0149.1	MA0149.1	0.0743
MA0150.1	MA0150.1	8.50829e-13
MA0152.1	MA0152.1	0.022
MA0153.1	MA0153.1	0.663
MA0154.1	MA0154.1	0.015
MA0155.1	MA0155.1	0.177
MA0156.1	MA0156.1	3.10573e-14
MA0157.1	MA0157.1	0.304
MA0159.1	MA0159.1	0.114
MA0160.1	MA0160.1	0.00512
MA0162.1	MA0162.1	0.7
MA0163.1	MA0163.1	0.0027
MA0164.1	MA0164.1	0.504
MA0258.1	MA0258.1	0.825
MA0259.1	MA0259.1	0.0308

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11774

Novel motif	Logo	P-value
1	1	0.0893
10	10	0.116
100	100	0.485
101	101	0.917
102	102	0.348
103	103	0.0738
104	104	0.781
105	105	0.84
106	106	0.906
107	107	0.235
108	108	0.454
109	109	0.00175
11	11	0.0858
110	110	0.266
111	111	0.153
112	112	0.714
113	113	0.00362
114	114	0.0398
115	115	0.0425
116	116	0.801
117	117	0.00496
118	118	0.0201
119	119	0.644
12	12	0.383
120	120	0.664
121	121	0.851
122	122	0.0393
123	123	0.837
124	124	0.328
125	125	0.347
126	126	0.79
127	127	0.209
128	128	0.847
129	129	0.904
13	13	0.299
130	130	0.99
131	131	0.911
132	132	0.0351
133	133	0.302
134	134	0.506
135	135	0.737
136	136	0.17
137	137	0.498
138	138	0.485
139	139	0.238
14	14	0.47
140	140	0.479
141	141	0.517
142	142	0.735
143	143	0.00189
144	144	0.991
145	145	0.603
146	146	0.528
147	147	0.238
148	148	0.292
149	149	0.696
15	15	0.0693
150	150	0.413
151	151	0.899
152	152	0.732
153	153	0.391
154	154	0.538
155	155	0.379
156	156	0.296
157	157	0.456
158	158	0.0414
159	159	0.771
16	16	0.651
160	160	0.867
161	161	0.393
162	162	0.0611
163	163	0.29
164	164	0.109
165	165	0.481
166	166	0.0269
167	167	0.0348
168	168	0.673
169	169	0.304
17	17	0.487
18	18	0.0374
19	19	0.398
2	2	0.0949
20	20	0.0337
21	21	0.811
22	22	0.582
23	23	0.48
24	24	0.0782
25	25	0.472
26	26	0.432
27	27	0.619
28	28	0.841
29	29	0.0246
3	3	0.259
30	30	0.0259
31	31	0.892
32	32	6.96111e-8
33	33	0.21
34	34	0.434
35	35	0.316
36	36	0.036
37	37	0.041
38	38	0.536
39	39	0.133
4	4	0.592
40	40	0.0519
41	41	0.0896
42	42	0.219
43	43	0.177
44	44	0.841
45	45	0.553
46	46	0.314
47	47	0.136
48	48	0.26
49	49	0.129
5	5	0.416
50	50	0.612
51	51	0.567
52	52	0.378
53	53	0.579
54	54	0.987
55	55	0.423
56	56	0.489
57	57	0.927
58	58	0.481
59	59	0.83
6	6	0.623
60	60	0.893
61	61	0.0599
62	62	0.535
63	63	0.78
64	64	0.297
65	65	0.956
66	66	0.0314
67	67	0.165
68	68	0.672
69	69	0.956
7	7	0.504
70	70	0.23
71	71	0.053
72	72	0.523
73	73	0.0589
74	74	0.302
75	75	0.00768
76	76	0.0252
77	77	0.677
78	78	0.896
79	79	0.979
8	8	0.336
80	80	0.262
81	81	0.924
82	82	0.504
83	83	0.683
84	84	0.697
85	85	0.764
86	86	0.27
87	87	0.00325
88	88	0.665
89	89	0.833
9	9	0.875
90	90	0.097
91	91	0.139
92	92	0.896
93	93	0.614
94	94	0.075
95	95	0.00531
96	96	0.508
97	97	0.956
98	98	0.226
99	99	0.07

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11774

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010065 human skin - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000014 (zone of skin)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0007029 (surface)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010065 (human skin - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005324
+|accession_numbers=CAGE;DRX008723;DRR009595;DRZ001020;DRZ002405;DRZ012370;DRZ013755
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000014,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0007029,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.24!172.43!HOPX;;chr17:80797886..80797906,-!p1@ZNF750!1.95!88.40!ZNF750;;chr3:189507432..189507459,+!p1@TP63!1.84!67.51!TP63;;chr3:12330560..12330579,+!p1@PPARG!1.83!76.26!PPARG;;chr19:46801639..46801699,+!p1@HIF3A!1.78!59.74!HIF3A;;chr7:19157248..19157268,-!p1@TWIST1!1.73!141.34!TWIST1;;chr19:33793430..33793447,-!p1@CEBPA!1.71!201.57!CEBPA;;chr15:42749722..42749739,-!p2@ZFP106!1.70!85.49!ZFP106;;chr11:34642612..34642646,+!p1@EHF!1.62!40.80!EHF;;chr20:55204351..55204377,+!p1@TFAP2C!1.60!48.57!TFAP2C;;chr17:48072574..48072597,-!p1@DLX3!1.59!37.89!DLX3;;chr13:72441315..72441454,-!p1@DACH1!1.58!71.89!DACH1;;chr21:39870339..39870443,-!p1@ERG!1.57!35.94!ERG;;chr16:79634624..79634642,-!p1@MAF!1.56!132.60!MAF;;chr5:158526917..158526932,-!p1@EBF1!1.55!84.03!EBF1;;chr8:10588010..10588030,-!p1@SOX7!1.54!34.00!SOX7;;chr2:19558373..19558392,-!p1@OSR1!1.53!88.40!OSR1;;chr1:209979467..209979494,-!p1@IRF6!1.53!36.43!IRF6;;chr19:46800289..46800327,+!p2@HIF3A!1.53!33.03!HIF3A;;chr2:119605214..119605230,-!p1@EN1!1.53!32.54!EN1;;chr15:57511609..57511651,+!p2@TCF12!1.51!51.97!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.50!34.49!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!1.48!37.40!NFATC2;;chr10:131762504..131762555,-!p1@EBF3!1.48!29.14!EBF3;;chr8:25902876..25902936,-!p1@EBF2!1.48!29.14!EBF2;;chr11:129245526..129245553,+!p1@BARX2!1.46!28.17!BARX2;;chr7:15726296..15726315,-!p1@MEOX2!1.45!27.20!MEOX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.45!27.20!ZBED1;;chr1:40105299..40105326,-!p1@HEYL!1.44!26.23!HEYL;;chr15:101069113..101069169,-!p1@CERS3!1.44!26.23!CERS3;;chr18:53068911..53068935,-!p4@TCF4!1.43!29.14!TCF4;;chr5:2751762..2751784,-!p1@IRX2!1.41!24.77!IRX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.41!24.77!MLXIPL;;chr12:52437488..52437507,+!p2@NR4A1!1.41!24.77!NR4A1;;chr2:145277882..145277967,-!p3@ZEB2!1.40!40.80!ZEB2;;chr22:38380543..38380569,-!p1@SOX10!1.40!24.29!SOX10;;chr16:85932760..85932775,+!p1@IRF8!1.40!24.29!IRF8;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.39!23.80!HOXC5;;chr11:120110863..120110908,+!p2@POU2F3!1.39!23.31!POU2F3;;chr1:170633348..170633399,+!p2@PRRX1!1.38!31.09!PRRX1;;chr20:62680984..62680999,-!p1@SOX18!1.36!28.66!SOX18;;chr7:27205136..27205164,-!p1@HOXA9!1.36!21.86!HOXA9;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.35!21.37!PEG3;;chr8:99956662..99956684,+!p1@OSR2!1.34!31.57!OSR2;;chr8:102504651..102504683,+!p1@GRHL2!1.33!20.40!GRHL2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.33!20.40!TFCP2L1;;chr2:145277640..145277771,-!p1@ZEB2!1.30!247.23!ZEB2;;chr16:79634595..79634620,-!p2@MAF!1.30!34.49!MAF;;chr2:10091815..10091864,+!p1@GRHL1!1.30!25.26!GRHL1;;chr2:60780753..60780800,-!p1@BCL11A!1.29!89.37!BCL11A;;chr7:27192185..27192209,-!p1@HOXA3!1.27!17.49!HOXA3;;chr10:8096631..8096660,+!p1@GATA3!1.26!20.89!GATA3;;chr5:158527104..158527135,-!p4@EBF1!1.26!17.00!EBF1;;chr10:64576105..64576133,-!p1@EGR2!1.25!34.00!EGR2;;chr6:10412600..10412637,-!p1@TFAP2A!1.25!27.69!TFAP2A;;chr1:214161272..214161322,+!p1@PROX1!1.25!23.80!PROX1;;chr2:239756671..239756732,+!p1@TWIST2!1.24!52.46!TWIST2;;chr6:144329384..144329405,-!p1@PLAGL1!1.23!182.63!PLAGL1;;chr16:54320675..54320715,-!p1@IRX3!1.23!34.00!IRX3;;chr6:10415276..10415341,-!p2@TFAP2A!1.23!19.43!TFAP2A;;chr1:203055129..203055147,-!p1@MYOG!1.23!16.03!MYOG;;chr6:85474299..85474324,-!p1@TBX18!1.22!27.69!TBX18;;chr6:19837592..19837621,+!p1@ID4!1.20!90.34!ID4;;chr11:46299199..46299233,+!p1@CREB3L1!1.19!73.83!CREB3L1;;chr6:144289132..144289134,-!p3@PLAGL1!1.19!34.00!PLAGL1;;chr8:55370487..55370503,+!p1@SOX17!1.19!14.57!SOX17;;chr5:88178983..88179012,-!p1@MEF2C!1.18!107.83!MEF2C;;chr3:12329397..12329433,+!p2@PPARG!1.18!32.06!PPARG;;chr17:53342311..53342400,+!p1@HLF!1.18!16.03!HLF;;chr3:128212033..128212051,-!p1@GATA2!1.18!14.09!GATA2;;chr11:34535297..34535317,-!p1@ELF5!1.18!14.09!ELF5;;chr7:15726243..15726293,-!p2@MEOX2!1.18!14.09!MEOX2;;chr7:96654133..96654150,-!p1@DLX5!1.18!14.09!DLX5;;chr17:80797863..80797874,-!p2@ZNF750!1.16!13.60!ZNF750;;chr18:45663490..45663528,-!p2@ZBTB7C!1.15!13.11!ZBTB7C;;chr9:1050331..1050363,+!p1@DMRT2!1.15!13.11!DMRT2;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.11!SOX11;;chr1:119530493..119530572,-!p1@TBX15!1.15!13.11!TBX15;;chr1:24645832..24645853,+!p1@GRHL3!1.15!13.11!GRHL3;;chr1:61548225..61548299,+!p1@NFIA!1.14!166.60!NFIA;;chr3:21792585..21792625,-!p2@ZNF385D!1.13!14.09!ZNF385D;;chr19:2867325..2867348,+!p1@ZNF556!1.13!12.63!ZNF556;;chr8:93115274..93115323,-!p4@RUNX1T1!1.12!12.14!RUNX1T1;;chr6:1312325..1312340,+!p1@FOXQ1!1.11!19.43!FOXQ1;;chr12:52445218..52445237,+!p1@NR4A1!1.10!146.68!NR4A1;;chr5:137804484..137804498,+!p2@EGR1!1.10!46.63!EGR1;;chr5:172662197..172662216,-!p1@NKX2-5!1.10!11.66!NKX2-5;;chr8:93074803..93074845,-!p1@RUNX1T1!1.10!11.66!RUNX1T1;;chr1:170633262..170633285,+!p3@PRRX1!1.09!13.11!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!1.09!11.17!PAX3;;chr10:70320074..70320106,+!p1@TET1!1.08!22.34!TET1;;chr16:54320617..54320643,-!p3@IRX3!1.08!14.09!IRX3;;chr1:10754477..10754517,-!p1@CASZ1!1.07!17.97!CASZ1;;chr1:10856639..10856662,-!p2@CASZ1!1.07!10.69!CASZ1;;chr5:3595961..3595975,+!p3@IRX1!1.07!10.69!IRX1;;chr6:34524093..34524135,-!p1@SPDEF!1.07!10.69!SPDEF;;chr6:50786591..50786614,+!p1@TFAP2B!1.07!10.69!TFAP2B;;chr9:14314566..14314618,-!p1@NFIB!1.06!125.80!NFIB;;chr3:69788576..69788648,+!p1@MITF!1.05!55.37!MITF;;chr3:114819124..114819200,-!p3@ZBTB20!1.05!23.80!ZBTB20;;chr1:61548374..61548415,+!p4@NFIA!1.05!19.43!NFIA;;chr10:8096772..8096787,+!p2@GATA3!1.05!12.14!GATA3;;chr11:125034640..125034655,+!p1@PKNOX2!1.05!10.20!PKNOX2;;chr11:65554528..65554546,+!p1@OVOL1!1.05!10.20!OVOL1;;chr1:201979743..201979762,+!p1@ELF3!1.05!10.20!ELF3;;chr17:46682321..46682362,-!p1@HOXB6!1.05!10.20!HOXB6;;chr2:177001290..177001315,+!p1@HOXD3!1.05!10.20!HOXD3;;chr9:126774018..126774055,+!p1@LHX2!1.05!10.20!LHX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.04!26.23!ZFPM2;;chr18:6414884..6414942,-!p1@L3MBTL4!1.04!12.63!L3MBTL4;;chr1:23696308..23696339,-!p2@ZNF436!1.03!20.89!ZNF436;;chr17:41739283..41739297,-!p1@MEOX1!1.03!9.71!MEOX1;;chr18:53089538..53089578,-!p14@TCF4!1.03!9.71!TCF4;;chr9:132427883..132427951,+!p2@PRRX2!1.03!9.71!PRRX2;;chr5:3595934..3595957,+!p2@IRX1!1.03!9.71!IRX1;;chr2:60781201..60781258,-!p3@BCL11A!1.03!9.71!BCL11A;;chr14:75745523..75745537,+!p1@FOS!1.02!1155.99!FOS;;chr18:52989031..52989079,-!p2@TCF4!1.02!22.83!TCF4;;chr9:14314522..14314556,-!p3@NFIB!1.01!21.86!NFIB;;chr1:164528616..164528660,+!p5@PBX1!1.01!19.43!PBX1;;chr20:30433396..30433414,-!p1@FOXS1!1.01!9.23!FOXS1;;chr8:93115445..93115462,-!p7@RUNX1T1!1.01!9.23!RUNX1T1;;chr7:28725740..28725778,+!p1@CREB5!1.00!81.60!CREB5;;chr7:28448965..28448994,+!p2@CREB5!1.00!32.54!CREB5;;chr1:61547894..61547968,+!p2@NFIA!1.00!26.71!NFIA;;chr7:42276787..42276815,-!p1@GLI3!1.00!24.77!GLI3;;chr12:53625966..53626012,-!p2@RARG!1.00!24.29!RARG;;chr12:54785074..54785122,-!p2@ZNF385A!1.00!14.09!ZNF385A;;chr17:17726907..17726958,-!p2@SREBF1!0.99!55.86!SREBF1;;chr9:14314131..14314147,-!p2@NFIB!0.99!49.54!NFIB;;chr17:7493405..7493419,-!p1@SOX15!0.99!8.74!SOX15;;chr3:21792682..21792720,-!p1@ZNF385D!0.99!8.74!ZNF385D;;chr10:119302508..119302559,+!p5@EMX2!0.99!8.74!EMX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.99!8.74!HOXC5;;chr13:72441074..72441172,-!p2@DACH1!0.99!8.74!DACH1;;chr1:201979703..201979721,+!p2@ELF3!0.99!8.74!ELF3;;chr18:22932080..22932170,-!p1@ZNF521!0.98!37.40!ZNF521;;chr3:12329358..12329393,+!p3@PPARG!0.98!21.37!PPARG;;chr19:45971246..45971265,+!p1@FOSB!0.97!161.26!FOSB;;chr17:70117153..70117174,+!p1@SOX9!0.97!88.40!SOX9;;chr15:60884706..60884743,-!p1@RORA!0.97!44.20!RORA;;chrX:84498989..84499003,+!p1@ZNF711!0.97!11.66!ZNF711;;chr2:176981499..176981522,+!p2@HOXD10!0.97!8.26!HOXD10;;chr2:68592406..68592424,+!p1@PLEK!0.97!8.26!PLEK;;chr15:57210961..57211012,+!p3@TCF12!0.96!26.71!TCF12;;chr12:96588368..96588394,+!p3@ELK3!0.96!22.34!ELK3;;chr13:73633131..73633149,+!p1@KLF5!0.95!87.91!KLF5;;chr1:61548069..61548102,+!p3@NFIA!0.94!19.43!NFIA;;chr1:170632583..170632590,+!p26@PRRX1!0.94!7.77!PRRX1;;chr1:209979411..209979433,-!p2@IRF6!0.94!7.77!IRF6;;chr22:19748231..19748317,+!p1@TBX1!0.94!7.77!TBX1;;chr4:111558135..111558198,-!p2@PITX2!0.94!7.77!PITX2;;chr9:126773880..126773895,+!p2@LHX2!0.94!7.77!LHX2;;chr11:44331576..44331650,-!p1@ALX4!0.94!7.77!ALX4;;chr12:54422217..54422239,+!p3@HOXC6!0.94!7.77!HOXC6;;chr5:124082322..124082364,-!p1@ZNF608!0.93!19.91!ZNF608;;chr19:13134772..13134822,+!p2@NFIX!0.93!11.17!NFIX;;chr1:61924375..61924380,+!p6@NFIA!0.93!10.69!NFIA;;chr11:47279504..47279563,+!p1@NR1H3!0.92!17.00!NR1H3;;chr16:54964740..54964789,+!p1@IRX5!0.92!10.69!IRX5;;chr10:8095593..8095625,+!p3@GATA3!0.92!8.74!GATA3;;chr14:75747296..75747329,+!p4@FOS!0.92!7.29!FOS;;chr2:176994408..176994492,+!p1@HOXD8!0.92!7.29!HOXD8;;chr4:174451370..174451387,-!p1@HAND2!0.92!7.29!HAND2;;chr6:10419768..10419819,-!p6@TFAP2A!0.92!7.29!TFAP2A;;chr8:93107451..93107468,-!p2@RUNX1T1!0.92!7.29!RUNX1T1;;chr9:14314946..14314983,-!p8@NFIB!0.92!7.29!NFIB;;chr9:14313641..14313652,-!p13@NFIB!0.92!7.29!NFIB;;chr6:21593973..21593988,+!p1@SOX4!0.91!267.63!SOX4;;chr6:21597765..21597779,+!p2@SOX4!0.91!60.23!SOX4;;chr2:60780607..60780624,-!p2@BCL11A!0.91!22.83!BCL11A;;chr8:22550982..22550999,-!p1@EGR3!0.91!20.89!EGR3;;chr6:91006518..91006570,-!p1@BACH2!0.91!17.00!BACH2;;chr7:44143925..44143970,+!p1@AEBP1!0.90!161.26!AEBP1;;chr6:106534192..106534224,+!p1@PRDM1!0.90!20.40!PRDM1;;chr18:77155922..77155939,+!p1@NFATC1!0.90!19.91!NFATC1;;chr3:42947600..42947680,+!p1@ZNF662!0.90!10.20!ZNF662;;chr3:169381420..169381535,-!p1@MECOM!0.90!8.26!MECOM;;chr10:114710098..114710130,+!p2@TCF7L2!0.89!53.43!TCF7L2;;chr7:44143978..44143989,+!p2@AEBP1!0.89!12.63!AEBP1;;chr5:158526459..158526481,-!p2@EBF1!0.89!9.23!EBF1;;chr12:26277817..26277863,-!p2@BHLHE41!0.89!9.23!BHLHE41;;chr12:54785054..54785072,-!p4@ZNF385A!0.89!7.77!ZNF385A;;chr11:129245736..129245758,+!p2@BARX2!0.89!6.80!BARX2;;chr12:54410948..54410992,+!p3@HOXC5!0.89!6.80!HOXC5;;chr5:2751785..2751808,-!p2@IRX2!0.89!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10065-101I2
 |is_a=EFO:0002091;;FF:0010065
 |is_obsolete=
+|library_id=CNhs11774
+|library_id_phase_based=2:CNhs11774
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10065
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10065
 |name=skin, fetal, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11774,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 79: @@
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 84: / Line 101: @@
 |top_motifs=TBP:4.85936731923;MEF2{A,B,C,D}:3.16765596813;IKZF2:3.0389512701;SPZ1:2.87070752438;ZNF384:2.85707313032;MYBL2:2.6711013797;NKX2-3_NKX2-5:2.5933832806;HOX{A4,D4}:2.540546428;ESR1:2.53755918743;SOX5:2.52320987789;FOXL1:2.48561232928;NR5A1,2:2.47180110637;TAL1_TCF{3,4,12}:2.44095410915;TOPORS:2.41871705473;TBX4,5:2.36981473838;NR1H4:2.27870683521;KLF4:2.1408937539;NKX2-1,4:2.10133865592;NANOG:2.05686941254;MAZ:1.96182958015;TFAP2{A,C}:1.9527502693;PAX6:1.9150028987;ZNF238:1.91070433567;FOXA2:1.90206484625;IKZF1:1.87675238773;NR6A1:1.8607983028;POU3F1..4:1.85369847887;BPTF:1.80542532936;GCM1,2:1.76950462778;XBP1:1.76782303607;FOXM1:1.69642749926;TGIF1:1.67073432021;MED-1{core}:1.64410926243;PDX1:1.64129870007;RBPJ:1.62863439701;FOXP1:1.62201876255;GLI1..3:1.61704982852;TEF:1.56695127553;SRF:1.53654929948;TLX2:1.53326722727;LHX3,4:1.52659301865;ZIC1..3:1.47317555487;MZF1:1.45630158223;GTF2I:1.43843830447;T:1.43390232793;GATA4:1.37729800367;FOXD3:1.37289858115;HIC1:1.3606935701;TEAD1:1.35375945286;ALX1:1.35077814836;RXRA_VDR{dimer}:1.33177437489;ZNF148:1.29261910074;HMGA1,2:1.28604773969;TFAP4:1.27853692845;GFI1:1.26829511252;TFCP2:1.25190652646;SMAD1..7,9:1.23540123324;NKX6-1,2:1.21567909653;SP1:1.21001390344;TLX1..3_NFIC{dimer}:1.18340728907;SNAI1..3:1.15161547268;PRDM1:1.13860005807;PATZ1:1.13712050709;FOXO1,3,4:1.10068562189;ATF2:1.09424966789;GTF2A1,2:1.09279682298;ALX4:1.09278940304;PITX1..3:1.03081225474;MYFfamily:1.02380752346;MTF1:1.022303048;EP300:1.01995589878;POU1F1:1.01808438205;NKX3-2:1.01738029835;EGR1..3:0.986473886241;POU6F1:0.978883255923;LMO2:0.968080236795;XCPE1{core}:0.922259691286;FOXQ1:0.910463433104;HSF1,2:0.874353687105;GFI1B:0.871966468025;ZEB1:0.861969148493;MAFB:0.858787479226;ATF6:0.839507675235;EVI1:0.833539970951;DBP:0.832035596753;POU5F1:0.815815085871;NFATC1..3:0.812967195972;UFEwm:0.809747625776;HOX{A5,B5}:0.793261973255;NFE2L1:0.783240464859;PAX5:0.78137540367;NHLH1,2:0.747706146761;SOX{8,9,10}:0.744750663574;CDC5L:0.743691546752;MTE{core}:0.724236245553;VSX1,2:0.694840042734;PAX4:0.688456650297;GZF1:0.670821484248;TFAP2B:0.660511235643;GATA6:0.630983028747;MYOD1:0.628301967265;BREu{core}:0.61158183788;RREB1:0.599621870497;AR:0.591580075;NKX3-1:0.589110238399;HBP1_HMGB_SSRP1_UBTF:0.585167012446;HMX1:0.580812204835;AIRE:0.491418132532;YY1:0.490553234756;FOX{D1,D2}:0.438201896187;NANOG{mouse}:0.432643738621;HOX{A6,A7,B6,B7}:0.384038724335;FOXP3:0.373917643002;PAX1,9:0.332050126719;SOX17:0.317231825147;ZFP161:0.311789252458;STAT5{A,B}:0.306452801982;TP53:0.294214393692;EBF1:0.290487738946;NR3C1:0.28945670032;SOX2:0.284811020773;ESRRA:0.281163753559;IRF7:0.275994110803;CUX2:0.215768324357;EN1,2:0.209923135498;FOX{F1,F2,J1}:0.132167571719;ZBTB6:0.13022926233;HNF4A_NR2F1,2:0.117192060729;PBX1:0.114790681338;REST:0.093412427572;HAND1,2:0.0852958060605;NFIX:0.0850936745881;LEF1_TCF7_TCF7L1,2:0.0811450539986;STAT2,4,6:0.0223422080539;ZNF423:-0.00507176732639;HNF1A:-0.00680752042297;FOXN1:-0.0641455958645;ZNF143:-0.0941912226869;RFX2..5_RFXANK_RFXAP:-0.124518271836;RORA:-0.15087740148;NFY{A,B,C}:-0.155465982061;CDX1,2,4:-0.20032590567;STAT1,3:-0.220828620159;FOX{I1,J2}:-0.23154331391;SREBF1,2:-0.235082906181;ATF4:-0.242664622276;E2F1..5:-0.248522132826;IRF1,2:-0.264369607724;FOSL2:-0.265731244509;RXR{A,B,G}:-0.283299697075;JUN:-0.301283488047;NRF1:-0.314093914733;SPI1:-0.316939704332;SPIB:-0.335582183305;PRRX1,2:-0.351706710947;OCT4_SOX2{dimer}:-0.372159917643;ZBTB16:-0.3733445808;ETS1,2:-0.374684040998;PAX3,7:-0.384833113843;ARID5B:-0.389288226335;HLF:-0.447036203864;ELF1,2,4:-0.447821473637;RFX1:-0.470907712975;PAX2:-0.485774781248;NFIL3:-0.489549725728;DMAP1_NCOR{1,2}_SMARC:-0.54281328297;FOS_FOS{B,L1}_JUN{B,D}:-0.546288354607;CEBPA,B_DDIT3:-0.58617247714;NFKB1_REL_RELA:-0.593821792989;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.612902716521;HES1:-0.61387534175;RUNX1..3:-0.63571163083;POU2F1..3:-0.701223531605;TFDP1:-0.71165476877;ATF5_CREB3:-0.721346868008;CREB1:-0.736115095976;HOXA9_MEIS1:-0.741103534406;ADNP_IRX_SIX_ZHX:-0.795428127847;ONECUT1,2:-0.798003649324;bHLH_family:-0.837980323619;AHR_ARNT_ARNT2:-0.845217196631;BACH2:-0.950579019803;MYB:-0.96713648506;PAX8:-0.971271789131;NFE2:-0.98909454085;NFE2L2:-1.03977253337;PPARG:-1.16389431307;NKX2-2,8:-1.20958215534;HIF1A:-1.2298778421;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.23180323637;CRX:-1.26982266656;ELK1,4_GABP{A,B1}:-1.28906762324
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10065-101I2;search_select_hide=table117:FF:10065-101I2
 }}

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FF:10065-101I2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:19, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0