FFCP PHASE1:Hg19::chr22:35739816..35739887,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10043 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11982 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-291bp_to_ENST00000492723_5end | |||
|cluster_id=chr22:35739816..35739887,+ | |||
|coexpression_cluster_id=C273 | |||
|description=CAGE_peak_3_at_TOM1_5end | |||
|id=chr22:35739816..35739887,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.29e-23!42;CL:0000766!6.18e-22!76;CL:0000860!9.00e-21!45;CL:0000557!1.29e-19!71;CL:0002009!9.61e-19!65;CL:0000839!1.24e-18!70;CL:0000763!1.49e-18!112;CL:0000049!1.49e-18!112;CL:0002194!8.30e-18!63;CL:0000576!8.30e-18!63;CL:0000040!8.30e-18!63;CL:0000559!8.30e-18!63;CL:0000738!1.34e-17!140;CL:0002032!1.69e-15!165;CL:0000837!1.69e-15!165;CL:0000037!4.47e-15!172;CL:0000566!4.47e-15!172;CL:0002031!3.47e-14!124;CL:0002087!7.72e-14!119;CL:0000988!9.94e-13!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.98e-36;33!CL:0002057;6.98e-36;33!CL:0000473;4.45e-27;39!CL:0000234;4.45e-27;39!CL:0000576;5.71e-23;48!CL:0000766;2.49e-17;69!CL:0000763;5.72e-09;100!CL:0002087;1.55e-08;104!CL:0000738;6.70e-08;136!CL:0002393;3.05e-07;6!CL:0002397;3.05e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.03e-40,42;CL:0002057,1.03e-40,42;CL:0000473,1.29e-37,48;CL:0000234,1.29e-37,48;CL:0000766,2.83e-35,72;CL:0000557,1.60e-31,67;CL:0002009,5.45e-30,61;CL:0000839,4.37e-29,66;CL:0000738,1.12e-28,136;CL:0002194,3.03e-28,59;CL:0000576,3.03e-28,59;CL:0000040,3.03e-28,59;CL:0000559,3.03e-28,59;CL:0000763,9.45e-27,108;CL:0000049,9.45e-27,108;CL:0000037,7.59e-24,168;CL:0002031,3.70e-23,120;CL:0002032,6.61e-23,161;CL:0000837,6.61e-23,161;CL:0002087,2.50e-22,115;CL:0000988,2.12e-21,177 | |||
|ontology_enrichment_development_v019=CL:0002057;2.15e-30;42!CL:0000049;5.57e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.36e-17!115;UBERON:0002390!2.88e-16!102;UBERON:0003061!2.88e-16!102;UBERON:0002371!9.68e-16!80;UBERON:0002193!4.82e-15!112;UBERON:0001474!8.13e-15!86;UBERON:0004765!1.81e-11!101;UBERON:0001434!1.81e-11!101;UBERON:0002405!4.82e-11!115;UBERON:0001049!3.41e-10!57;UBERON:0005068!3.41e-10!57;UBERON:0006241!3.41e-10!57;UBERON:0007135!3.41e-10!57;UBERON:0002780!1.27e-09!41;UBERON:0001890!1.27e-09!41;UBERON:0006240!1.27e-09!41;UBERON:0003080!5.56e-09!42;UBERON:0002020!4.69e-08!34;UBERON:0003528!4.69e-08!34;UBERON:0002616!5.46e-08!59;UBERON:0000955!8.68e-08!69;UBERON:0006238!8.68e-08!69;UBERON:0002791!1.69e-07!33;UBERON:0001893!2.20e-07!34;UBERON:0001017!6.07e-07!82;UBERON:0001869!9.29e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;6.92e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.97e-26,76;UBERON:0001474,8.83e-24,82;UBERON:0002390,1.24e-21,98;UBERON:0003061,1.24e-21,98;UBERON:0004765,3.15e-20,90;UBERON:0002405,5.96e-20,93;UBERON:0001434,2.46e-19,100;UBERON:0002193,8.13e-19,108;UBERON:0001049,2.89e-10,56;UBERON:0005068,2.89e-10,56;UBERON:0006241,2.89e-10,56;UBERON:0007135,2.89e-10,56;UBERON:0000073,1.32e-08,53;UBERON:0002616,1.32e-08,53;UBERON:0002204,4.08e-08,167;UBERON:0003081,4.14e-08,203;UBERON:0002780,6.18e-08,41;UBERON:0001890,6.18e-08,41;UBERON:0003080,6.18e-08,41;UBERON:0006240,6.18e-08,41;UBERON:0003528,2.91e-07,34;UBERON:0002020,2.91e-07,34;UBERON:0007023,3.89e-07,114;UBERON:0002619,5.12e-07,22 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.422863212287913,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0.602694528023977,0,0,0,0,0,0.572471974262113,0.136874425072884,0,0.152826811495903,0.410502947249729,0.393553906568396,0.393364276848904,0,1.54816123316076,0,0,0,0.387336002901508,1.13735385989937,0,6.64794490238253,34.6941894123345,18.2289131401316,0.223915474239924,0.971680998056939,1.03030227053675,6.10672602874172,6.42389104270976,7.27752183563449,19.5240391000775,31.2487594896588,18.5823822537062,14.6723120084297,16.3942852178624,3.31075121844019,15.8583013138845,13.5551783552603,10.8341189275473,19.0124762938031,13.3724013528344,1.57306439111559,11.6311879100943,7.70229664982625,12.1474053901818,3.62836430205388,13.563528718271,8.52449501065388,45.2726412260591,28.9366464592481,21.7987787148451,31.4060831570929,43.2830822288767,6.29847649644838,13.9241885605675,10.6800514436394,6.96217252369946,1.05627643155971,1.70083439972035,1.88692780957538,3.59451619668784,0.750884464207532,10.6078887220073,0,0.59675003159727,0.182664153764634,0,0,0,0,0,0,0,0,1.70763890732835,1.17447437874188,1.52909291250092,0,1.68152568894461,0,5.31116379307349,8.64623678048162,5.96244347098577,0.83593247695339,0.977766799900771,0,0,0.222820913770347,0.883817722424512,0.221533894583621,1.08321545506006,0.512365278902701,0.520237390239513,1.47994114143309,0.829050053357545,0.869409257205157,0.889719378972363,0.535081656179426,0,0.566546713487831,0,0.34362744548263,0.506039384039006,0,0.651083453856419,0,0.301150238155546,0.383959833463255,0,0,0,3.22570789159572,5.88368430723716,4.34473211648397,4.87613732627923,0,0,2.89151321907653,0,0.579386075843295,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,1.0478326039817,0,0,0.649094787309367,0.174129737299267,0.398873881556595,0.715471872916026,0,0,0,0,0.347140501607594,0,0.419499436209906,0,0,0,0.35576626268671,1.00416183829401,0,0,0.24406205754817,0,0,0,0,0,0,0,0,3.9534125230819,3.87780264148325,0,1.49091585508596,0,1.45650098894541,0.573673241497627,0.354668382198357,0,0,0,0.622422070799533,0,0,0.454072282934794,0,0,0.624320153660641,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0,1.97328599257748,0.427114777637135,0.211931901159562,0,0.412210116953756,3.09168648054755,0.18611685633159,1.5189869901714,0.292311015483596,2.27190396819703,0.644349290496095,0.484938170456436,1.77504796258307,0.10075209822764,0.169560592310488,0,0,0,0.487894824518382,0.132529768321485,0.116193942869518,0.518305275076852,0,0.72995471815166,0,0,0,0.464367928031979,0,0.236613600079688,0.168584690078102,0.241011029883482,0,0,0,0,0,0.38474715694639,0,0,0,0,1.26755034821831,3.9313088667105,3.54473944008842,0,0.368965315629341,0.171567810298526,0.109750285408626,0,0.301586917234893,0,0.325808305310325,0,0,0.34779121492523,0,0,0.925971025153221,0.761016608938393,0,0,0.246217006087397,0.468008530278475,0.297262324577456,0,0.335964256397719,0,0.268675568108545,0,0,5.91195885475132,2.20121085033065,1.03664057770386,0.576479813667846,1.00993946741104,0.761974731506028,0,0,0,0.102827492703324,0.300343057843917,0.285826432630578,0,0,0.1466765716419,0.775630294546667,0,0,0.797814349754612,0,0,0,0,0.857867961948885,0,0,0,0.355391948742546,0,0,0,0.899756920638513,0,1.00451418286425,16.8667151586425,0.479249710983165,0,0,0.289562613335158,0,0.179060963239896,0.448340575974109,5.31983052545203,6.46882724578552,3.59360501583295,0,0,0,0.167516265334349,0.637938751653163,59.1715548918274,53.8490626567245,15.3333739971333,0,0.500170521059677,0,2.07970861530807,1.24900292158013,1.41932173530541,0.819989904948992,0,0,0,0,0,0.0868836144680828,0,0,6.82334486205528,3.45142721309787,2.34800627167578,0,1.66435439510497,0,0,1.68808170616869,0.280660094433074,0.384417447767103,0.511707249066704,0.160853921143607,0,0,0,0.328508624055237,0,0.116210378459959,0.241718899183244,0,0.276242966807689,0,0.728364672026868,0.262248829918848,0,0.385076685522074,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0.438519753291869,0,0,0,0,0.9273691048295,0.732555718546747,0.495056999523528,0,0,0,0.386682873168488,0,0.307007349452259,0,0.537101224341368,0.145016693914229,0.170453254832202,0.267096106940212,0.165284915360978,0,0.893288987462089,0.10115778085555,0,2.83331112147576,0,0,0,0,0,0,0,0.316379424718726,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,1.05650146756755,0.136499911407986,1.1312434556297,0,0,0,0,0,0,0,0,0,0.573645408816206,0.0982490410131212,0,0,0.844430541190656,1.31717957183961,0,0,0,0,0,1.41215701165169,0,0,0,0.229723400206959,0.507447609232169,0.764637207142375,0,0.714695326373367,1.64544909234478,0.648473311192717,0.540031437238115,0.79312517629427,0.213648142254946,0,0.245040215981032,0.743212700502875,0.577076851905779,1.20941133692304,0.637705090915289,0.59873811429845,0,1.05836791361941,0.324621940274555,2.24637742490767,0.228234679033192,0.47003968731907,12.5317238545034,0.169291777801603,0.481764225311099,1.41259795033733,0.851692475380653,1.71752672377882,0,0.223676107892416,0.333698283423817,0.19538809540204,0.278406173895242,0,0,0,1.4098700508785,0.18714054040822,0.879049075631364,0,0.111443384277478,0.284136146806413,0,0,0.307160702099232,1.9882952955326,1.54736358051564,1.22439575525196,0.659215496907038,0.844501632511974,2.19172787076177,0.552567831062295,0.755798243562828,0.306806047506464,0.246169610922139,0,0.179736702294654,1.25314822272926,0,1.38100767891707,0,0,1.93866549219044,0.371072392647405,0,0.260427761085233,0.437299999980979,0,0.1137934482855,0.508507300585533,0.472775363535873,0.344743373241465,0.291604613383254,0.173624994933292,0.885741385813839,0.361789315876224,0,2.87506075821184,2.36438095162838,0,0.10893846351899,0.278847488557207,1.53900517007594,0.569710279235006,0.46112780877612,1.25660702173681,0.651884231532048,0.31900115973192,0.183195186803725,0.533034776018635,0,0.470940769185074,0,0,0.392125068635479,0.167821586975843,0.189753732724185,0.476809736941136,0.632994193584081,0.326465616318295,0.282706142867882,0.432777279484182,0.995261931078505,0.353830258013357,1.83309043480088,0.296521128680622,0.247127877893006,0.208843899010911,0.943615861729479,0,0.468528891450678,0.547364367646998,0.391329237864179,0.971121518136371,2.76209081994573,1.20990716048664,1.83643656978294,1.64285107034069,0.150323419414493,0.103688191397247,0,0,0.313932918407225,0,0.853828638089378,0.554698692052555,0.347119476670262,0.195984794828755,0,0.698906672968121,0.687944129886466,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.484945082442097,0.176512253383001,0.677942222341597,0.137041924646751,0.19871461170299,0.759729551470544,0.782205530939212,0.240476460754601,0.426905989478705,0.599428828746391,0,0.229073192331831,1.02956998717179,0.288109595976299,0.124252535565433,1.41416420770077,0.407712618220842,0.313808538937,0.305994652908965,1.15580235960608,1.20084057741958,2.19048606227189,0,0,0.262887354279314,2.23425921017803,1.60412296808179,2.15361907373044,0.599037001496973,0.429226048136571,0.89268582976749,1.20930250476107,0.720599767084807,0,0.0787831823072236,0.0824158583811665,0,0.0984274815147488,0.0846733320657845,1.59045937961861,1.63444087333891,0.482259445395058,0.137539436597234,0,4.72445172258151,1.5476039091159,0.850493793212345,0,0.630445658393585,0.629455057619977,0.105600336519406,0.179287339332845,0,0.714695326373367,0,0,0,0,0.326587360109409,0,0.328370082997356,0.170388021785422,0,0,0,2.19781025814636,1.71902382265497,0.342173675768659,1.40963004463334,0.640724475406168,1.72924735609633,3.72815149812476,0.496166021811951,0,0.121792598380896,1.27668251554036,0.544017803369474,0.2506898940227,0,0.655745261419609,0.471162288750703,0,0.976210119215705,1.502291168478,0.573409195690071,1.44207766997908,0.993542447062135,0.968440444553616,0,0.151649117541648,1.14186133417987,0,0.468334905806882,0.144921028610825,0.149254802886874,0,0.554805861502613,0.378806010550178,0.251567901752575,0.889811221596536,0.457680136793847,0.151230923763239,0.621748802331122,0,0.159296767163702,1.34940933649081,0,0.414706207840855,0.797525143673985,3.1304703708704,0,1.52322084867518,0.406870733204662,0.363697318405119,0.644463342254931,1.39210127963548,0.796191777397232,0,0.343395705182793,0.336749488765919,0,0.192619830407303,0.214441591374926,0.260994291965212,0.453411851024545,0,0.734210113519403,0,0,0.438568099157414,0.176689145945881,0.38582807654183,0.337884881306145,0.256241518587947,0.345430341731199,0.607719912354764,2.35039341457942,1.16916185303633,0.930053882193542,0.817826971279221,0,0,0,0,0.213383459388282,0.172214979660816,0,0,0,0.622077260032973,0.255788742607303,0.431299245586727,0.157265941855896,0.327628914576042,0.169732529954025,0.850299680406731,0.247871528518004,0,0.636008701306837,0.315446980005013,0,0,0,0.834979926253974,1.41696576325585,3.03304332208587,1.02558182120378,1.26035848110859,0.276629009856872,3.06803726700517,0,0.392590874004102,0.235939446695481,0.366857197043358,0.115525666150338,0.381382095467167,0,1.19349733269765,0.601682626794058,1.21023041222112,0.781514011233092,0.523813388962845,0.655087670040387,0.739280431085226,0.337687923091973,2.34323429584154,2.89361515101658,0.634158101939068,1.09394961803644,0.548257766857182,0.496211178389294,2.11045493231545,0.383287282918786,0.535701835878287,6.05310699993883,1.21393120847326,7.28519012324152,1.5966426629275,0,0.514464028312255,0.747667062745149,0.197318320688547,0.118193840883968,0.667388411352415,0.470958557103084,0.942693539496011,0.560544326627578,2.73947616152849,0.431855182437243,1.9110067515482,0.78624198594322,0.632054446930906,0.116241425368125,0.347716544605159,0,0.828864656652147,0.51215543128185,4.83881763269864,0.430227358820278,0.236664001461131,0.681707238073262,1.69354820076372,0,0.62041277132864,0,0.894843454382338,0.098150233615243,0.121917924982269,3.88457302312737,0.718639647993729,0,0.971421986118279,0,0.795803100645473,0.356760272332706,0,0.109940516745429,0.754814217833368,0.694567422971502,0.655678681511872,1.41095188908457,0.980593287015622,0.235676547101626,1.57046773691956,5.04978880556046,1.2679671827502,0.679708458751268,0.751871343838829,0.709036767709349,0.199882311849858,0.71421575442263,0,0.401206833445841,0,0.458729283404541,2.00675416412032,1.10440093535229,0.475940431336403,0.436350690340377,2.645134202577,0,0.462175628631418,0.432626562123789,0,0.109265571963696,0,0.101988829741982,0,0.459474497674225,0.50141507858475,0.378893491091197,2.94760543171796,4.1458471972939,2.99955687999496,1.27940389140589,0.952257725854961,0.129177819672012,1.36564371450887,0.112131862580613,0.318235791390825,1.81905470062397,0.653150243690884,0,0.673520530145875,0.717222053926764,1.33064142618405,0.244209805832924,0.213454691755431,0,0,0,1.58913877437726,0.406896178315738,1.33151354837103,0.402547587182052,0 | |||
|short_description=p3@TOM1 | |||
}} |
Latest revision as of 23:52, 19 September 2015
Short description: | p3@TOM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TOM1_5end |
Coexpression cluster: | C273_Neutrophils_CD14_Eosinophils_Monocytederived_CD4_Natural_Mast |
Association with transcript: | -291bp_to_ENST00000492723_5end |
EntrezGene: | TOM1 |
HGNC: | 11982 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.03e-40 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.03e-40 | 42 |
defensive cell | 1.29e-37 | 48 |
phagocyte | 1.29e-37 | 48 |
myeloid leukocyte | 2.83e-35 | 72 |
granulocyte monocyte progenitor cell | 1.60e-31 | 67 |
macrophage dendritic cell progenitor | 5.45e-30 | 61 |
myeloid lineage restricted progenitor cell | 4.37e-29 | 66 |
leukocyte | 1.12e-28 | 136 |
monopoietic cell | 3.03e-28 | 59 |
monocyte | 3.03e-28 | 59 |
monoblast | 3.03e-28 | 59 |
promonocyte | 3.03e-28 | 59 |
myeloid cell | 9.45e-27 | 108 |
common myeloid progenitor | 9.45e-27 | 108 |
hematopoietic stem cell | 7.59e-24 | 168 |
hematopoietic lineage restricted progenitor cell | 3.70e-23 | 120 |
hematopoietic oligopotent progenitor cell | 6.61e-23 | 161 |
hematopoietic multipotent progenitor cell | 6.61e-23 | 161 |
nongranular leukocyte | 2.50e-22 | 115 |
hematopoietic cell | 2.12e-21 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.97e-26 | 76 |
bone element | 8.83e-24 | 82 |
hematopoietic system | 1.24e-21 | 98 |
blood island | 1.24e-21 | 98 |
skeletal element | 3.15e-20 | 90 |
immune system | 5.96e-20 | 93 |
skeletal system | 2.46e-19 | 100 |
hemolymphoid system | 8.13e-19 | 108 |
neural tube | 2.89e-10 | 56 |
neural rod | 2.89e-10 | 56 |
future spinal cord | 2.89e-10 | 56 |
neural keel | 2.89e-10 | 56 |
regional part of nervous system | 1.32e-08 | 53 |
regional part of brain | 1.32e-08 | 53 |
musculoskeletal system | 4.08e-08 | 167 |
lateral plate mesoderm | 4.14e-08 | 203 |
regional part of forebrain | 6.18e-08 | 41 |
forebrain | 6.18e-08 | 41 |
anterior neural tube | 6.18e-08 | 41 |
future forebrain | 6.18e-08 | 41 |
brain grey matter | 2.91e-07 | 34 |
gray matter | 2.91e-07 | 34 |
adult organism | 3.89e-07 | 114 |
regional part of cerebral cortex | 5.12e-07 | 22 |