FF:10545-107H5: Difference between revisions

Latest revision as of 14:28, 3 June 2020

Name:	oral squamous cell carcinoma cell line:HSC-3
Species:	Human (Homo sapiens)
Library ID:	CNhs11717
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	tongue
dev stage	NA
sex	male
age	64
cell type	unclassifiable
cell line	HSC-3
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005321

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11717		CAGE		DRX007974		DRR008846

Accession ID Hg19

Library id		BAM		CTSS
CNhs11717		DRZ000271		DRZ001656

Accession ID Hg38

Library id		BAM		CTSS
CNhs11717		DRZ011621		DRZ013006

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.195
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.277
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.00775
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.306
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0571
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.595
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.879
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0731
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.324
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0731
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0217
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.136
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0731
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.221
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.19
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0546
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11717

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.289
MA0003.1	MA0003.1	0.864
MA0004.1	MA0004.1	0.829
MA0006.1	MA0006.1	0.171
MA0007.1	MA0007.1	0.437
MA0009.1	MA0009.1	0.0449
MA0014.1	MA0014.1	0.883
MA0017.1	MA0017.1	0.416
MA0018.2	MA0018.2	2.20961e-5
MA0019.1	MA0019.1	0.647
MA0024.1	MA0024.1	0.283
MA0025.1	MA0025.1	0.432
MA0027.1	MA0027.1	0.438
MA0028.1	MA0028.1	0.788
MA0029.1	MA0029.1	0.46
MA0030.1	MA0030.1	0.0761
MA0031.1	MA0031.1	0.169
MA0035.2	MA0035.2	0.711
MA0038.1	MA0038.1	0.00323
MA0039.2	MA0039.2	0.933
MA0040.1	MA0040.1	0.0965
MA0041.1	MA0041.1	0.434
MA0042.1	MA0042.1	0.207
MA0043.1	MA0043.1	1.77572e-4
MA0046.1	MA0046.1	0.162
MA0047.2	MA0047.2	0.336
MA0048.1	MA0048.1	0.622
MA0050.1	MA0050.1	0.00389
MA0051.1	MA0051.1	0.0624
MA0052.1	MA0052.1	0.0021
MA0055.1	MA0055.1	0.406
MA0057.1	MA0057.1	0.421
MA0058.1	MA0058.1	0.735
MA0059.1	MA0059.1	0.553
MA0060.1	MA0060.1	5.36407e-5
MA0061.1	MA0061.1	0.536
MA0062.2	MA0062.2	0.0938
MA0065.2	MA0065.2	0.0042
MA0066.1	MA0066.1	0.0584
MA0067.1	MA0067.1	0.00323
MA0068.1	MA0068.1	0.00397
MA0069.1	MA0069.1	0.263
MA0070.1	MA0070.1	0.336
MA0071.1	MA0071.1	0.478
MA0072.1	MA0072.1	0.252
MA0073.1	MA0073.1	0.398
MA0074.1	MA0074.1	0.477
MA0076.1	MA0076.1	0.271
MA0077.1	MA0077.1	0.468
MA0078.1	MA0078.1	0.761
MA0079.2	MA0079.2	0.24
MA0080.2	MA0080.2	5.28315e-6
MA0081.1	MA0081.1	0.0212
MA0083.1	MA0083.1	0.00216
MA0084.1	MA0084.1	0.321
MA0087.1	MA0087.1	0.604
MA0088.1	MA0088.1	0.322
MA0090.1	MA0090.1	0.0285
MA0091.1	MA0091.1	0.371
MA0092.1	MA0092.1	1
MA0093.1	MA0093.1	0.79
MA0099.2	MA0099.2	0.119
MA0100.1	MA0100.1	0.326
MA0101.1	MA0101.1	0.162
MA0102.2	MA0102.2	0.13
MA0103.1	MA0103.1	6.49669e-6
MA0104.2	MA0104.2	0.646
MA0105.1	MA0105.1	3.52174e-4
MA0106.1	MA0106.1	4.57307e-7
MA0107.1	MA0107.1	0.171
MA0108.2	MA0108.2	0.0021
MA0111.1	MA0111.1	0.21
MA0112.2	MA0112.2	0.00185
MA0113.1	MA0113.1	0.565
MA0114.1	MA0114.1	0.145
MA0115.1	MA0115.1	0.943
MA0116.1	MA0116.1	0.00163
MA0117.1	MA0117.1	0.564
MA0119.1	MA0119.1	0.0246
MA0122.1	MA0122.1	0.648
MA0124.1	MA0124.1	0.0157
MA0125.1	MA0125.1	0.623
MA0131.1	MA0131.1	0.469
MA0135.1	MA0135.1	0.333
MA0136.1	MA0136.1	3.67249e-4
MA0137.2	MA0137.2	0.0363
MA0138.2	MA0138.2	0.595
MA0139.1	MA0139.1	0.143
MA0140.1	MA0140.1	0.831
MA0141.1	MA0141.1	0.474
MA0142.1	MA0142.1	5.67593e-4
MA0143.1	MA0143.1	0.342
MA0144.1	MA0144.1	0.971
MA0145.1	MA0145.1	0.162
MA0146.1	MA0146.1	0.401
MA0147.1	MA0147.1	0.653
MA0148.1	MA0148.1	0.27
MA0149.1	MA0149.1	0.0773
MA0150.1	MA0150.1	0.769
MA0152.1	MA0152.1	0.314
MA0153.1	MA0153.1	0.614
MA0154.1	MA0154.1	0.0156
MA0155.1	MA0155.1	0.987
MA0156.1	MA0156.1	0.00892
MA0157.1	MA0157.1	0.621
MA0159.1	MA0159.1	0.0638
MA0160.1	MA0160.1	0.834
MA0162.1	MA0162.1	0.219
MA0163.1	MA0163.1	2.46752e-6
MA0164.1	MA0164.1	0.909
MA0258.1	MA0258.1	0.196
MA0259.1	MA0259.1	0.912

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11717

Novel motif	Logo	P-value
1	1	0.159
10	10	0.148
100	100	0.23
101	101	0.641
102	102	0.297
103	103	0.0862
104	104	0.605
105	105	0.587
106	106	0.0251
107	107	0.00702
108	108	0.191
109	109	0.0153
11	11	0.224
110	110	0.0337
111	111	0.628
112	112	0.0708
113	113	0.104
114	114	0.0917
115	115	0.753
116	116	0.572
117	117	0.0213
118	118	0.312
119	119	0.264
12	12	0.182
120	120	0.0246
121	121	0.402
122	122	0.965
123	123	0.447
124	124	0.0793
125	125	0.418
126	126	0.551
127	127	0.654
128	128	0.568
129	129	0.087
13	13	0.0442
130	130	0.972
131	131	0.251
132	132	0.308
133	133	0.024
134	134	0.0157
135	135	0.89
136	136	0.133
137	137	0.227
138	138	0.0304
139	139	0.862
14	14	0.906
140	140	0.934
141	141	0.0455
142	142	0.93
143	143	0.0531
144	144	0.96
145	145	0.152
146	146	0.57
147	147	0.434
148	148	0.868
149	149	0.203
15	15	0.489
150	150	0.279
151	151	0.408
152	152	0.463
153	153	0.947
154	154	0.988
155	155	0.49
156	156	0.701
157	157	0.875
158	158	0.25
159	159	0.625
16	16	0.0249
160	160	0.0885
161	161	0.0591
162	162	0.159
163	163	0.717
164	164	0.0877
165	165	0.0941
166	166	0.66
167	167	0.152
168	168	0.171
169	169	0.0119
17	17	0.102
18	18	0.235
19	19	0.683
2	2	0.267
20	20	0.998
21	21	0.11
22	22	0.803
23	23	0.775
24	24	0.0783
25	25	0.455
26	26	0.182
27	27	0.531
28	28	0.496
29	29	0.0332
3	3	0.205
30	30	0.596
31	31	0.758
32	32	0.605
33	33	0.219
34	34	0.469
35	35	0.431
36	36	0.581
37	37	0.52
38	38	0.354
39	39	0.586
4	4	0.973
40	40	0.351
41	41	0.273
42	42	0.539
43	43	0.477
44	44	0.00292
45	45	0.372
46	46	0.0865
47	47	0.138
48	48	0.175
49	49	0.79
5	5	0.832
50	50	0.778
51	51	0.604
52	52	0.364
53	53	0.889
54	54	0.675
55	55	0.167
56	56	0.418
57	57	0.0425
58	58	0.277
59	59	0.125
6	6	0.783
60	60	0.0731
61	61	0.914
62	62	0.273
63	63	0.191
64	64	0.396
65	65	0.326
66	66	0.836
67	67	0.728
68	68	0.127
69	69	0.137
7	7	0.161
70	70	0.024
71	71	0.0197
72	72	0.444
73	73	0.407
74	74	0.274
75	75	0.0516
76	76	0.491
77	77	0.225
78	78	0.0112
79	79	0.644
8	8	0.119
80	80	0.061
81	81	0.384
82	82	0.942
83	83	0.708
84	84	0.257
85	85	0.619
86	86	0.344
87	87	0.0839
88	88	0.431
89	89	0.0371
9	9	0.713
90	90	0.74
91	91	0.708
92	92	0.42
93	93	0.542
94	94	0.913
95	95	0.63
96	96	0.891
97	97	0.94
98	98	0.953
99	99	0.309

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11717

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102025 HSC-3 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
1749 (squamous cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003343 (mucosa of oral region)
0000033 (head)
0000974 (neck)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004785 (respiratory system mucosa)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102211 (oral squamous cell carcinoma cell line sample)
0102027 (oral cancer cell line sample)
0102709 (head and neck squamous cell carcinoma cell line sample)
0102025 (HSC-3 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007868
+|DRA_sample_Accession=CAGE@SAMD00005321
-|accession_numbers=CAGE;DRX007974;DRR008846;DRZ000271;DRZ001656
+|accession_numbers=CAGE;DRX007974;DRR008846;DRZ000271;DRZ001656;DRZ011621;DRZ013006
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004785,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002076,CL:0002251
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:189507432..189507459,+!p1@TP63!2.23!167.29!TP63;;chr17:7493405..7493419,-!p1@SOX15!2.14!137.94!SOX15;;chr11:34642612..34642646,+!p1@EHF!2.05!110.97!EHF;;chr1:209979467..209979494,-!p1@IRF6!1.88!84.19!IRF6;;chr1:201979743..201979762,+!p1@ELF3!1.82!64.57!ELF3;;chr6:10415276..10415341,-!p2@TFAP2A!1.80!75.57!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.72!51.36!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.69!48.06!IRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.68!76.31!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.63!48.06!BNC1;;chr6:1312325..1312340,+!p1@FOXQ1!1.61!63.10!FOXQ1;;chr13:73633131..73633149,+!p1@KLF5!1.60!389.60!KLF5;;chr1:209979411..209979433,-!p2@IRF6!1.59!37.60!IRF6;;chr17:7492684..7492778,-!p2@SOX15!1.52!66.77!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.52!48.98!ZNF385A;;chr2:176969179..176969226,+!p2@HOXD11!1.49!30.08!HOXD11;;chr2:176969228..176969260,+!p1@HOXD11!1.48!29.35!HOXD11;;chr12:54785054..54785072,-!p4@ZNF385A!1.46!31.18!ZNF385A;;chr1:201979703..201979721,+!p2@ELF3!1.46!27.70!ELF3;;chr15:101069113..101069169,-!p1@CERS3!1.46!27.51!CERS3;;chr3:111314186..111314204,-!p1@ZBED2!1.46!27.51!ZBED2;;chr5:134369905..134369972,-!p1@PITX1!1.45!41.45!PITX1;;chr8:10588010..10588030,-!p1@SOX7!1.44!26.60!SOX7;;chr8:102504651..102504683,+!p1@GRHL2!1.40!24.40!GRHL2;;chr6:10419768..10419819,-!p6@TFAP2A!1.38!22.75!TFAP2A;;chr3:189507523..189507535,+!p5@TP63!1.38!22.75!TP63;;chr17:48072574..48072597,-!p1@DLX3!1.31!19.63!DLX3;;chr1:6479968..6479986,-!p1@HES2!1.30!19.08!HES2;;chr10:48355030..48355090,+!p1@ZNF488!1.29!24.03!ZNF488;;chr6:10412392..10412409,-!p4@TFAP2A!1.29!20.91!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!1.25!16.69!IRX2;;chr13:73636516..73636532,+!p3@KLF5!1.23!18.34!KLF5;;chr6:126240380..126240430,+!p2@NCOA7!1.20!38.70!NCOA7;;chr17:26833339..26833378,+!p1@FOXN1!1.20!14.67!FOXN1;;chr1:158979792..158979814,+!p2@IFI16!1.19!137.75!IFI16;;chr19:45908292..45908374,-!p1@PPP1R13L!1.18!122.53!PPP1R13L;;chr5:134369879..134369898,-!p2@PITX1!1.17!13.76!PITX1;;chr12:66218836..66218888,+!p1@HMGA2!1.15!123.08!HMGA2;;chr6:10412576..10412599,-!p5@TFAP2A!1.15!13.02!TFAP2A;;chr13:73636252..73636307,+!p2@KLF5!1.14!14.86!KLF5;;chr3:189507460..189507471,+!p3@TP63!1.14!12.84!TP63;;chr19:45971246..45971265,+!p1@FOSB!1.12!227.08!FOSB;;chr17:17726907..17726958,-!p2@SREBF1!1.11!72.82!SREBF1;;chr6:10413188..10413249,-!p7@TFAP2A!1.04!10.09!TFAP2A;;chr8:102504690..102504704,+!p3@GRHL2!1.02!9.54!GRHL2;;chr11:34642656..34642667,+!p2@EHF!1.00!8.99!EHF;;chr12:54332608..54332636,+!p1@HOXC13!0.99!8.80!HOXC13;;chr9:100615499..100615519,+!p1@FOXE1!0.98!8.62!FOXE1;;chr1:158979872..158979898,+!p3@IFI16!0.97!26.60!IFI16;;chr8:71157595..71157616,-!p13@NCOA2!0.97!8.25!NCOA2;;chr11:65554528..65554546,+!p1@OVOL1!0.96!8.07!OVOL1;;chr20:55204351..55204377,+!p1@TFAP2C!0.95!10.09!TFAP2C;;chr17:7492504..7492520,-!p3@SOX15!0.95!7.89!SOX15;;chr12:66218598..66218645,+!p2@HMGA2!0.94!36.87!HMGA2;;chr19:49139477..49139552,-!p4@DBP!0.94!9.91!DBP;;chr12:54332652..54332671,+!p2@HOXC13!0.93!7.52!HOXC13;;chr17:17723626..17723663,-!p4@SREBF1!0.92!15.22!SREBF1;;chr12:66218255..66218304,+!p3@HMGA2!0.91!19.99!HMGA2;;chr17:80797886..80797906,-!p1@ZNF750!0.91!7.15!ZNF750;;chr6:126240356..126240379,+!p7@NCOA7!0.90!8.62!NCOA7;;chr6:10412477..10412490,-!p10@TFAP2A!0.90!6.97!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!0.90!6.97!PAX9;;chr14:75745523..75745537,+!p1@FOS!0.89!854.96!FOS;;chr22:19748231..19748317,+!p1@TBX1!0.89!6.79!TBX1;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.60!KDM5D;;chr17:17723746..17723766,-!p5@SREBF1!0.87!10.82!SREBF1;;chr8:49833948..49833973,-!p2@SNAI2!0.86!42.37!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!0.86!18.16!EPAS1;;chr14:75746722..75746777,+!p2@FOS!0.86!8.07!FOS;;chr3:189526110..189526125,+!p8@TP63!0.85!6.05!TP63;;chr11:129245526..129245553,+!p1@BARX2!0.85!6.05!BARX2;;chr8:102504979..102505010,+!p2@GRHL2!0.85!6.05!GRHL2;;chr20:50721803..50721857,-!p2@ZFP64!0.84!9.72!ZFP64;;chr6:126240442..126240459,+!p4@NCOA7!0.84!7.70!NCOA7;;chr17:17726892..17726903,-!p6@SREBF1!0.84!6.79!SREBF1;;chr12:54332687..54332701,+!p3@HOXC13!0.84!5.87!HOXC13;;chr6:10419824..10419840,-!p9@TFAP2A!0.83!5.69!TFAP2A;;chr3:181429704..181429722,+!p1@SOX2!0.83!5.69!SOX2;;chr12:125002827..125002855,-!p5@NCOR2!0.82!8.25!NCOR2;;chr6:126240463..126240489,+!p6@NCOA7!0.82!6.42!NCOA7;;chr21:36421535..36421610,-!p2@RUNX1!0.80!20.36!RUNX1;;chrX:129244655..129244697,-!p4@ELF4!0.80!9.91!ELF4;;chr22:24093154..24093183,-!p2@ZNF70!0.80!5.32!ZNF70;;chr12:66218573..66218596,+!p7@HMGA2!0.79!7.89!HMGA2;;chr15:83953373..83953386,-!p2@BNC1!0.79!5.14!BNC1;;chr2:172967621..172967637,-!p1@DLX2!0.78!14.49!DLX2;;chr1:158979851..158979865,+!p5@IFI16!0.78!11.74!IFI16;;chr9:14313893..14313908,-!p7@NFIB!0.77!7.34!NFIB;;chr20:62680984..62680999,-!p1@SOX18!0.77!6.60!SOX18;;chrY:2803415..2803468,+!p1@ZFY!0.77!4.95!ZFY;;chr17:46682321..46682362,-!p1@HOXB6!0.77!4.95!HOXB6;;chr19:33793430..33793447,-!p1@CEBPA!0.76!21.64!CEBPA;;chr2:176969124..176969155,+!p5@HOXD11!0.76!4.77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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHSC-3.CNhs11717.10545-107H5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHSC-3.CNhs11717.10545-107H5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHSC-3.CNhs11717.10545-107H5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHSC-3.CNhs11717.10545-107H5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHSC-3.CNhs11717.10545-107H5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10545-107H5
 |is_a=EFO:0002091;;FF:0000210;;FF:0102025
 |is_obsolete=
 |library_id=CNhs11717
-|library_id_phase_based=1:CNhs11717
+|library_id_phase_based=2:CNhs11717
 |library_ids=CNhs11717
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10545
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10545
 |name=oral squamous cell carcinoma cell line:HSC-3
 |namespace=FANTOM5
@@ Line 52: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11717,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10545-107H5;search_select_hide=table117:FF:10545-107H5
 }}

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FF:10545-107H5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:28, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0