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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005693
|DRA_sample_Accession=CAGE@SAMD00005693
|accession_numbers=CAGE;DRX007834;DRR008706;DRZ000131;DRZ001516
|accession_numbers=CAGE;DRX007834;DRR008706;DRZ000131;DRZ001516;DRZ011481;DRZ012866
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003928,UBERON:0010317,UBERON:0002294,UBERON:0001173,UBERON:0002423
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003928,UBERON:0010317,UBERON:0002294,UBERON:0001173,UBERON:0002423
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg38.nobarcode.ctss.bed.gz
|id=FF:10496-107C1
|id=FF:10496-107C1
|is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0103910
|is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0103910
Line 46: Line 51:
|library_id=CNhs11265
|library_id=CNhs11265
|library_id_phase_based=2:CNhs11265
|library_id_phase_based=2:CNhs11265
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10496
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10496
|name=bile duct carcinoma cell line:TFK-1
|name=bile duct carcinoma cell line:TFK-1
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs11265,LSID758,release008,COMPLETED"
|profile_hcage=CNhs11265,LSID758,release008,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=",,,"
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 72: Line 82:
|sample_cell_line=TFK-1
|sample_cell_line=TFK-1
|sample_cell_lot=
|sample_cell_lot=
|sample_cell_type="duct cell, bile duct"
|sample_cell_type=duct cell, bile duct
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_company=RIKEN Bioresource centre
Line 90: Line 100:
|top_motifs=SNAI1..3:2.29317703424;ZEB1:2.18394540214;ELK1,4_GABP{A,B1}:1.83402341227;PITX1..3:1.77600031893;VSX1,2:1.70590496559;NR6A1:1.63658508663;MYOD1:1.56731643121;NFE2L2:1.42365070059;NKX6-1,2:1.40551915048;HNF1A:1.40339137088;FOXP1:1.35077099019;ADNP_IRX_SIX_ZHX:1.32521292082;LMO2:1.28615482236;FOXD3:1.28449804244;FOXQ1:1.23519043593;bHLH_family:1.22386139207;TOPORS:1.16150417834;NKX2-3_NKX2-5:1.086276858;DBP:1.077620865;FOX{I1,J2}:1.05660862875;RORA:1.04326512439;ESRRA:1.02243901516;HNF4A_NR2F1,2:0.992426401185;TBX4,5:0.939549836906;AIRE:0.937000454679;ONECUT1,2:0.907256317365;CEBPA,B_DDIT3:0.797155865938;STAT2,4,6:0.793359054394;NR1H4:0.785564711325;YY1:0.758154530866;FOXL1:0.757994234242;NKX3-2:0.729827847848;IRF7:0.717048400212;ZBTB16:0.700679341384;HOX{A6,A7,B6,B7}:0.698466919506;CDC5L:0.688178142792;ATF4:0.685406465561;PDX1:0.678105942803;NKX2-1,4:0.661879707602;ATF5_CREB3:0.657296742356;IKZF1:0.653300183755;TEAD1:0.643510964458;NFE2:0.600367262712;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.597088622332;NKX3-1:0.579560251113;CRX:0.569736689415;PAX4:0.550329469876;FOXA2:0.54538033544;TLX1..3_NFIC{dimer}:0.539557506702;HMGA1,2:0.525871800782;NR5A1,2:0.525162581545;ATF6:0.517953172859;NFIL3:0.466477428082;FOX{F1,F2,J1}:0.449101392069;FOXN1:0.445144390247;E2F1..5:0.444545970457;POU5F1:0.440177950662;HIF1A:0.400491633595;FOXP3:0.352302546848;CREB1:0.341725541629;CUX2:0.334399944453;PRRX1,2:0.298832204255;NKX2-2,8:0.29522774658;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.288292832808;HAND1,2:0.280730459894;SOX2:0.263527294682;HOX{A5,B5}:0.251779433565;BACH2:0.250327659037;HLF:0.246363574725;FOS_FOS{B,L1}_JUN{B,D}:0.240636349928;CDX1,2,4:0.233814586261;OCT4_SOX2{dimer}:0.233166693886;RBPJ:0.230781917007;T:0.230521244759;BREu{core}:0.228118611059;ESR1:0.2132546734;STAT5{A,B}:0.206580669738;ZNF384:0.189661636696;ELF1,2,4:0.154340131537;JUN:0.138037437127;POU2F1..3:0.103010929608;LEF1_TCF7_TCF7L1,2:0.0919751284217;PAX2:0.0890217325854;SOX5:0.0884490131732;EVI1:0.0601816284198;TFAP2{A,C}:0.054875704414;POU1F1:0.0531654290796;EBF1:0.052339221548;IRF1,2:0.0135326206836;FOSL2:-0.00966849738292;PBX1:-0.029706447419;TP53:-0.0363723897668;TEF:-0.044732037606;ATF2:-0.0462185036019;MYB:-0.0506445085734;EP300:-0.0584361916318;TFDP1:-0.0769340969864;MED-1{core}:-0.0879985065114;ZNF143:-0.126602577106;ARID5B:-0.151892759655;PAX8:-0.153486474173;LHX3,4:-0.165478241755;ALX1:-0.165894918951;GFI1B:-0.19534873612;IKZF2:-0.209243584696;NFY{A,B,C}:-0.218850503925;NFKB1_REL_RELA:-0.220038751678;AHR_ARNT_ARNT2:-0.229155224106;FOXO1,3,4:-0.230504276722;ZFP161:-0.230662169973;FOX{D1,D2}:-0.232817721831;RXRA_VDR{dimer}:-0.242272136303;TAL1_TCF{3,4,12}:-0.245568817415;MEF2{A,B,C,D}:-0.248544980689;HOXA9_MEIS1:-0.26688541974;RFX2..5_RFXANK_RFXAP:-0.280594962855;ALX4:-0.306872992498;MYBL2:-0.324707836348;DMAP1_NCOR{1,2}_SMARC:-0.332311712463;TFAP2B:-0.333414875306;BPTF:-0.339181928281;MTE{core}:-0.341402036941;UFEwm:-0.343477718263;PAX1,9:-0.344899089708;MAFB:-0.360421172229;NRF1:-0.375791798538;POU6F1:-0.414322147784;SOX{8,9,10}:-0.431243783894;ZIC1..3:-0.433922585509;TBP:-0.444152666349;PPARG:-0.458286401836;SPI1:-0.476662048458;HIC1:-0.491921193162;ETS1,2:-0.498832067373;KLF4:-0.500736085038;ZBTB6:-0.518383903048;SPIB:-0.533018556533;HOX{A4,D4}:-0.546004948351;GATA6:-0.560341037103;HSF1,2:-0.569142071581;GFI1:-0.579879661737;FOXM1:-0.581552136413;MZF1:-0.586032485665;MTF1:-0.614888814814;RREB1:-0.636530466055;REST:-0.636860275761;PRDM1:-0.671587616343;TFCP2:-0.691831970329;AR:-0.693785649115;GTF2I:-0.713495403371;NANOG:-0.718650781328;PAX3,7:-0.723017091361;PAX5:-0.738683976096;NR3C1:-0.753958843546;SREBF1,2:-0.773291932965;ZNF423:-0.79170724279;PATZ1:-0.81866235261;MAZ:-0.843364516731;GZF1:-0.862730882049;GLI1..3:-0.863197488852;GTF2A1,2:-0.886313643298;GATA4:-0.890523516164;RUNX1..3:-0.927458262231;SPZ1:-0.931127916248;ZNF148:-0.947849418047;NFATC1..3:-0.950036570261;NHLH1,2:-0.960488861078;EN1,2:-0.967378423821;TFAP4:-0.976405851936;TLX2:-0.977237166537;POU3F1..4:-1.01745441366;XBP1:-1.03023618857;NFE2L1:-1.03789982769;RFX1:-1.03957702299;MYFfamily:-1.04576889074;TGIF1:-1.05086926451;SOX17:-1.07856093184;HMX1:-1.10655053092;SRF:-1.13354712882;HBP1_HMGB_SSRP1_UBTF:-1.1348823708;NFIX:-1.16280645327;GCM1,2:-1.20219810409;ZNF238:-1.24714759602;SP1:-1.26984614729;STAT1,3:-1.27579180494;EGR1..3:-1.27763627983;XCPE1{core}:-1.33783272485;NANOG{mouse}:-1.4316040034;RXR{A,B,G}:-1.51211948214;HES1:-1.52760506476;PAX6:-1.64974383921;SMAD1..7,9:-2.37732127928
|top_motifs=SNAI1..3:2.29317703424;ZEB1:2.18394540214;ELK1,4_GABP{A,B1}:1.83402341227;PITX1..3:1.77600031893;VSX1,2:1.70590496559;NR6A1:1.63658508663;MYOD1:1.56731643121;NFE2L2:1.42365070059;NKX6-1,2:1.40551915048;HNF1A:1.40339137088;FOXP1:1.35077099019;ADNP_IRX_SIX_ZHX:1.32521292082;LMO2:1.28615482236;FOXD3:1.28449804244;FOXQ1:1.23519043593;bHLH_family:1.22386139207;TOPORS:1.16150417834;NKX2-3_NKX2-5:1.086276858;DBP:1.077620865;FOX{I1,J2}:1.05660862875;RORA:1.04326512439;ESRRA:1.02243901516;HNF4A_NR2F1,2:0.992426401185;TBX4,5:0.939549836906;AIRE:0.937000454679;ONECUT1,2:0.907256317365;CEBPA,B_DDIT3:0.797155865938;STAT2,4,6:0.793359054394;NR1H4:0.785564711325;YY1:0.758154530866;FOXL1:0.757994234242;NKX3-2:0.729827847848;IRF7:0.717048400212;ZBTB16:0.700679341384;HOX{A6,A7,B6,B7}:0.698466919506;CDC5L:0.688178142792;ATF4:0.685406465561;PDX1:0.678105942803;NKX2-1,4:0.661879707602;ATF5_CREB3:0.657296742356;IKZF1:0.653300183755;TEAD1:0.643510964458;NFE2:0.600367262712;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.597088622332;NKX3-1:0.579560251113;CRX:0.569736689415;PAX4:0.550329469876;FOXA2:0.54538033544;TLX1..3_NFIC{dimer}:0.539557506702;HMGA1,2:0.525871800782;NR5A1,2:0.525162581545;ATF6:0.517953172859;NFIL3:0.466477428082;FOX{F1,F2,J1}:0.449101392069;FOXN1:0.445144390247;E2F1..5:0.444545970457;POU5F1:0.440177950662;HIF1A:0.400491633595;FOXP3:0.352302546848;CREB1:0.341725541629;CUX2:0.334399944453;PRRX1,2:0.298832204255;NKX2-2,8:0.29522774658;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.288292832808;HAND1,2:0.280730459894;SOX2:0.263527294682;HOX{A5,B5}:0.251779433565;BACH2:0.250327659037;HLF:0.246363574725;FOS_FOS{B,L1}_JUN{B,D}:0.240636349928;CDX1,2,4:0.233814586261;OCT4_SOX2{dimer}:0.233166693886;RBPJ:0.230781917007;T:0.230521244759;BREu{core}:0.228118611059;ESR1:0.2132546734;STAT5{A,B}:0.206580669738;ZNF384:0.189661636696;ELF1,2,4:0.154340131537;JUN:0.138037437127;POU2F1..3:0.103010929608;LEF1_TCF7_TCF7L1,2:0.0919751284217;PAX2:0.0890217325854;SOX5:0.0884490131732;EVI1:0.0601816284198;TFAP2{A,C}:0.054875704414;POU1F1:0.0531654290796;EBF1:0.052339221548;IRF1,2:0.0135326206836;FOSL2:-0.00966849738292;PBX1:-0.029706447419;TP53:-0.0363723897668;TEF:-0.044732037606;ATF2:-0.0462185036019;MYB:-0.0506445085734;EP300:-0.0584361916318;TFDP1:-0.0769340969864;MED-1{core}:-0.0879985065114;ZNF143:-0.126602577106;ARID5B:-0.151892759655;PAX8:-0.153486474173;LHX3,4:-0.165478241755;ALX1:-0.165894918951;GFI1B:-0.19534873612;IKZF2:-0.209243584696;NFY{A,B,C}:-0.218850503925;NFKB1_REL_RELA:-0.220038751678;AHR_ARNT_ARNT2:-0.229155224106;FOXO1,3,4:-0.230504276722;ZFP161:-0.230662169973;FOX{D1,D2}:-0.232817721831;RXRA_VDR{dimer}:-0.242272136303;TAL1_TCF{3,4,12}:-0.245568817415;MEF2{A,B,C,D}:-0.248544980689;HOXA9_MEIS1:-0.26688541974;RFX2..5_RFXANK_RFXAP:-0.280594962855;ALX4:-0.306872992498;MYBL2:-0.324707836348;DMAP1_NCOR{1,2}_SMARC:-0.332311712463;TFAP2B:-0.333414875306;BPTF:-0.339181928281;MTE{core}:-0.341402036941;UFEwm:-0.343477718263;PAX1,9:-0.344899089708;MAFB:-0.360421172229;NRF1:-0.375791798538;POU6F1:-0.414322147784;SOX{8,9,10}:-0.431243783894;ZIC1..3:-0.433922585509;TBP:-0.444152666349;PPARG:-0.458286401836;SPI1:-0.476662048458;HIC1:-0.491921193162;ETS1,2:-0.498832067373;KLF4:-0.500736085038;ZBTB6:-0.518383903048;SPIB:-0.533018556533;HOX{A4,D4}:-0.546004948351;GATA6:-0.560341037103;HSF1,2:-0.569142071581;GFI1:-0.579879661737;FOXM1:-0.581552136413;MZF1:-0.586032485665;MTF1:-0.614888814814;RREB1:-0.636530466055;REST:-0.636860275761;PRDM1:-0.671587616343;TFCP2:-0.691831970329;AR:-0.693785649115;GTF2I:-0.713495403371;NANOG:-0.718650781328;PAX3,7:-0.723017091361;PAX5:-0.738683976096;NR3C1:-0.753958843546;SREBF1,2:-0.773291932965;ZNF423:-0.79170724279;PATZ1:-0.81866235261;MAZ:-0.843364516731;GZF1:-0.862730882049;GLI1..3:-0.863197488852;GTF2A1,2:-0.886313643298;GATA4:-0.890523516164;RUNX1..3:-0.927458262231;SPZ1:-0.931127916248;ZNF148:-0.947849418047;NFATC1..3:-0.950036570261;NHLH1,2:-0.960488861078;EN1,2:-0.967378423821;TFAP4:-0.976405851936;TLX2:-0.977237166537;POU3F1..4:-1.01745441366;XBP1:-1.03023618857;NFE2L1:-1.03789982769;RFX1:-1.03957702299;MYFfamily:-1.04576889074;TGIF1:-1.05086926451;SOX17:-1.07856093184;HMX1:-1.10655053092;SRF:-1.13354712882;HBP1_HMGB_SSRP1_UBTF:-1.1348823708;NFIX:-1.16280645327;GCM1,2:-1.20219810409;ZNF238:-1.24714759602;SP1:-1.26984614729;STAT1,3:-1.27579180494;EGR1..3:-1.27763627983;XCPE1{core}:-1.33783272485;NANOG{mouse}:-1.4316040034;RXR{A,B,G}:-1.51211948214;HES1:-1.52760506476;PAX6:-1.64974383921;SMAD1..7,9:-2.37732127928
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10496-107C1;search_select_hide=table117:FF:10496-107C1
}}
}}

Latest revision as of 14:27, 3 June 2020

Name:bile duct carcinoma cell line:TFK-1
Species:Human (Homo sapiens)
Library ID:CNhs11265
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebile duct
dev stageNA
sexmale
age63
cell typeduct cell, bile duct
cell lineTFK-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005693
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11265 CAGE DRX007834 DRR008706
Accession ID Hg19

Library idBAMCTSS
CNhs11265 DRZ000131 DRZ001516
Accession ID Hg38

Library idBAMCTSS
CNhs11265 DRZ011481 DRZ012866
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0175
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0807
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0715
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0765
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.135
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.108
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.122
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0715
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.278
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.35
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.187
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00533
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0715
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.104
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.173
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11265

Jaspar motifP-value
MA0002.20.106
MA0003.10.5
MA0004.10.543
MA0006.10.873
MA0007.10.635
MA0009.10.174
MA0014.10.0779
MA0017.10.00424
MA0018.20.929
MA0019.10.0534
MA0024.10.389
MA0025.10.00833
MA0027.10.758
MA0028.11.25514e-5
MA0029.10.671
MA0030.10.593
MA0031.10.588
MA0035.20.56
MA0038.10.152
MA0039.20.878
MA0040.10.659
MA0041.10.387
MA0042.10.404
MA0043.10.00322
MA0046.19.36925e-15
MA0047.27.95649e-4
MA0048.10.297
MA0050.10.128
MA0051.10.191
MA0052.10.0116
MA0055.10.00511
MA0057.10.543
MA0058.10.466
MA0059.10.0196
MA0060.10.00188
MA0061.10.678
MA0062.27.04602e-5
MA0065.28.35396e-4
MA0066.10.707
MA0067.10.572
MA0068.10.681
MA0069.10.57
MA0070.10.0885
MA0071.10.206
MA0072.10.924
MA0073.10.87
MA0074.10.694
MA0076.14.59287e-5
MA0077.10.629
MA0078.10.645
MA0079.20.041
MA0080.20.0154
MA0081.10.0608
MA0083.10.00748
MA0084.10.564
MA0087.10.856
MA0088.10.388
MA0090.10.0489
MA0091.10.0224
MA0092.10.627
MA0093.10.46
MA0099.20.00167
MA0100.10.666
MA0101.10.514
MA0102.20.0218
MA0103.19.39981e-9
MA0104.20.0219
MA0105.10.887
MA0106.10.432
MA0107.10.287
MA0108.21.69855e-5
MA0111.10.3
MA0112.26.2226e-4
MA0113.10.506
MA0114.11.28402e-5
MA0115.10.052
MA0116.10.2
MA0117.10.804
MA0119.10.00162
MA0122.10.686
MA0124.10.0675
MA0125.10.742
MA0131.10.634
MA0135.10.00298
MA0136.10.987
MA0137.20.789
MA0138.20.922
MA0139.15.61954e-5
MA0140.10.674
MA0141.10.0154
MA0142.10.501
MA0143.10.845
MA0144.10.172
MA0145.10.126
MA0146.10.897
MA0147.10.00885
MA0148.13.44069e-4
MA0149.10.117
MA0150.11.85729e-5
MA0152.10.259
MA0153.15.31698e-14
MA0154.10.827
MA0155.10.186
MA0156.10.275
MA0157.10.927
MA0159.10.00154
MA0160.10.0634
MA0162.10.233
MA0163.10.336
MA0164.10.277
MA0258.10.0188
MA0259.10.408



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11265

Novel motifP-value
10.0566
100.0354
1000.0938
1010.759
1020.466
1030.623
1040.992
1050.516
1060.305
1070.34
1080.299
1090.154
110.787
1100.336
1110.224
1120.483
1130.385
1140.0496
1150.709
1160.418
1170.116
1180.463
1190.0942
120.641
1200.803
1210.0228
1220.423
1230.00433
1240.834
1250.668
1260.995
1270.136
1280.649
1290.72
130.0166
1300.513
1310.337
1320.715
1330.136
1340.771
1350.528
1360.216
1370.134
1380.748
1390.117
140.736
1400.515
1410.27
1420.842
1430.048
1440.318
1450.785
1460.435
1470.73
1480.128
1490.986
150.0845
1500.521
1510.179
1520.604
1530.894
1540.753
1550.675
1560.31
1570.429
1580.419
1590.431
160.379
1600.922
1610.869
1620.705
1630.868
1640.0289
1650.0473
1660.308
1670.412
1680.754
1690.0113
170.287
180.509
190.533
20.864
200.163
210.255
220.913
230.96
240.466
250.603
260.144
270.989
280.606
290.193
30.113
300.859
310.599
320.175
330.109
340.326
350.621
360.12
370.487
380.471
390.41
40.505
400.371
410.0772
420.156
430.603
440.89
450.697
460.304
470.614
480.536
490.496
50.546
500.482
510.887
520.55
530.428
540.652
550.865
560.666
570.232
580.453
590.813
60.895
600.324
610.102
620.537
630.0649
640.393
650.593
660.786
670.745
680.051
690.463
70.193
700.0881
710.0851
720.631
730.951
740.967
750.011
760.255
770.189
780.00119
790.133
80.759
800.31
810.532
820.408
830.581
840.202
850.962
860.375
870.793
880.801
890.34
90.488
900.168
910.189
920.624
930.535
940.74
950.926
960.97
970.616
980.428
990.809



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11265


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002394 (bile duct)
0000058 (duct)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003928 (digestive system duct)
0010317 (germ layer / neural crest derived structure)
0002294 (biliary system)
0001173 (biliary tree)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0103910 (bile duct cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

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