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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005935
|DRA_sample_Accession=CAGE@SAMD00005935
|accession_numbers=CAGE;DRX008582;DRR009454;DRZ000879;DRZ002264
|accession_numbers=CAGE;DRX008582;DRR009454;DRZ000879;DRZ002264;DRZ012229;DRZ013614
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
Line 12: Line 12:
|datafreeze_phase=2
|datafreeze_phase=2
|def=
|def=
|donor=biol_rep2 (LK32)
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!2.05!110.27!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.76!56.60!SIM2;;chr12:66218836..66218888,+!p1@HMGA2!1.46!248.85!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.39!23.42!FOXG1;;chr1:170633348..170633399,+!p2@PRRX1!1.33!27.81!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.29!20.98!PRRX1;;chr14:29234581..29234601,+!p2@FOXG1!1.26!17.08!FOXG1;;chr10:94449703..94449718,+!p1@HHEX!1.25!63.43!HHEX;;chr12:66218904..66218913,+!p11@HMGA2!1.25!16.59!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.23!16.10!EHF;;chr12:66218923..66218934,+!p14@HMGA2!1.23!16.10!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.21!40.01!HIC1;;chr8:11561684..11561751,+!p1@GATA4!1.18!14.15!GATA4;;chr12:66218598..66218645,+!p2@HMGA2!1.17!63.43!HMGA2;;chr14:29236269..29236285,+!p3@FOXG1!1.17!13.66!FOXG1;;chr1:170633262..170633285,+!p3@PRRX1!1.14!14.64!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!1.12!12.20!HMGA2;;chr11:46299199..46299233,+!p1@CREB3L1!1.10!60.02!CREB3L1;;chr17:46622205..46622218,-!p3@HOXB2!1.09!13.17!HOXB2;;chr16:86544113..86544145,+!p1@FOXF1!1.08!13.66!FOXF1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.81!HMGA2;;chr1:170632959..170632987,+!p4@PRRX1!1.05!11.22!PRRX1;;chr3:141087393..141087426,+!p3@ZBTB38!1.04!40.50!ZBTB38;;chr2:19558373..19558392,-!p1@OSR1!0.99!24.40!OSR1;;chr1:170633058..170633084,+!p5@PRRX1!0.99!8.78!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.98!40.50!FOXD1;;chr2:239756671..239756732,+!p1@TWIST2!0.98!27.81!TWIST2;;chr12:66218212..66218244,+!p5@HMGA2!0.97!12.20!HMGA2;;chr1:170632115..170632136,+!p9@PRRX1!0.97!8.29!PRRX1;;chr11:61520075..61520136,+!p1@C11orf9!0.96!17.57!C11orf9;;chr17:46655704..46655718,-!p2@HOXB4!0.96!12.20!HOXB4;;chrY:2803415..2803468,+!p1@ZFY!0.94!7.81!ZFY;;chr3:141105705..141105770,+!p4@ZBTB38!0.93!9.27!ZBTB38;;chr19:42636586..42636607,-!p1@POU2F2!0.92!20.98!POU2F2;;chr11:46299539..46299620,+!p2@CREB3L1!0.89!11.71!CREB3L1;;chr21:38071462..38071474,+!p3@SIM2!0.89!6.83!SIM2;;chr7:27183291..27183324,-!p1@HOXA5!0.89!6.83!HOXA5;;chr17:1958388..1958404,+!p1@HIC1!0.88!43.91!HIC1;;chr17:46622070..46622109,-!p1@HOXB2!0.88!15.13!HOXB2;;chr17:46688334..46688385,-!p1@HOXB7!0.88!9.76!HOXB7;;chr17:46621937..46621966,-!p2@HOXB2!0.87!18.05!HOXB2;;chr1:221052840..221052875,+!p4@HLX!0.87!7.81!HLX;;chr21:38071403..38071428,+!p2@SIM2!0.87!6.34!SIM2;;chr1:221052776..221052799,+!p1@HLX!0.86!11.71!HLX;;chr1:170632439..170632465,+!p11@PRRX1!0.84!5.86!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!0.84!5.86!TCF21;;chr20:50721803..50721857,-!p2@ZFP64!0.83!9.27!ZFP64;;chr18:53068911..53068935,-!p4@TCF4!0.82!6.34!TCF4;;chr6:34204921..34204939,+!p3@HMGA1!0.80!174.68!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!0.80!25.86!TOX2;;chr5:321810..321877,+!p1@AHRR!0.80!18.05!AHRR;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.29!ETV4;;chr17:46659728..46659749,-!p3@HOXB3!0.80!5.37!HOXB3;;chr1:170632137..170632172,+!p10@PRRX1!0.80!5.37!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.80!5.37!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.80!5.37!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.80!5.37!PRRX1;;chr1:151032860..151032918,+!p1@MLLT11!0.79!67.33!MLLT11;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.17!TOX2;;chr20:6748325..6748352,+!p1@BMP2!0.79!7.81!BMP2;;chr12:125002739..125002756,-!p6@NCOR2!0.78!7.81!NCOR2;;chr17:46675420..46675465,-!p3@HOXB6!0.78!5.86!HOXB6;;chr6:45296048..45296082,+!p1@RUNX2!0.78!5.86!RUNX2;;chr15:96869255..96869291,+!p6@NR2F2!0.77!9.27!NR2F2;;chr17:46622114..46622138,-!p4@HOXB2!0.77!7.81!HOXB2;;chr8:55370720..55370733,+!p2@SOX17!0.77!4.88!SOX17;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.76!HMGA2;;chr2:66662281..66662308,+!p1@MEIS1!0.75!17.57!MEIS1;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.37!BNC1;;chr3:157823517..157823562,-!p1@SHOX2!0.74!4.88!SHOX2;;chr1:170632028..170632043,+!p20@PRRX1!0.73!4.39!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.73!4.39!PRRX1;;chr17:46621146..46621180,-!p10@HOXB2!0.73!4.39!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.39!KDM5D;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.83!ETV4;;chr5:72744445..72744466,-!p2@FOXD1!0.71!7.32!FOXD1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.70!327.40!TAX1BP3;;chr6:21597514..21597578,+!p4@SOX4!0.70!7.32!SOX4;;chr6:21597370..21597408,+!p5@SOX4!0.70!6.83!SOX4;;chr7:26191809..26191890,+!p1@NFE2L3!0.69!21.96!NFE2L3;;chr15:96869206..96869220,+!p21@NR2F2!0.69!3.90!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.69!3.90!HOXB4;;chr2:102091144..102091183,-!p2@RFX8!0.69!3.90!RFX8;;chr12:66357214..66357233,+!p13@HMGA2!0.69!3.90!HMGA2;;chr14:29236169..29236216,+!p6@FOXG1!0.69!3.90!FOXG1;;chr1:170632250..170632277,+!p7@PRRX1!0.69!3.90!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!0.68!6.83!TCF12;;chr2:66662895..66662907,+!p3@MEIS1!0.68!4.88!MEIS1;;chr11:65686802..65686818,+!p6@DRAP1!0.67!6.83!DRAP1;;chr6:106534192..106534224,+!p1@PRDM1!0.66!11.22!PRDM1;;chr15:96876966..96877017,+!p12@NR2F2!0.66!5.37!NR2F2;;chr1:221052994..221053008,+!p6@HLX!0.66!4.39!HLX;;chr15:96874244..96874259,+!p5@NR2F2!0.65!9.27!NR2F2;;chr3:178789522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|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!2.05!110.27!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.76!56.60!SIM2;;chr12:66218836..66218888,+!p1@HMGA2!1.46!248.85!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.39!23.42!FOXG1;;chr1:170633348..170633399,+!p2@PRRX1!1.33!27.81!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.29!20.98!PRRX1;;chr14:29234581..29234601,+!p2@FOXG1!1.26!17.08!FOXG1;;chr10:94449703..94449718,+!p1@HHEX!1.25!63.43!HHEX;;chr12:66218904..66218913,+!p11@HMGA2!1.25!16.59!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.23!16.10!EHF;;chr12:66218923..66218934,+!p14@HMGA2!1.23!16.10!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.21!40.01!HIC1;;chr8:11561684..11561751,+!p1@GATA4!1.18!14.15!GATA4;;chr12:66218598..66218645,+!p2@HMGA2!1.17!63.43!HMGA2;;chr14:29236269..29236285,+!p3@FOXG1!1.17!13.66!FOXG1;;chr1:170633262..170633285,+!p3@PRRX1!1.14!14.64!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!1.12!12.20!HMGA2;;chr11:46299199..46299233,+!p1@CREB3L1!1.10!60.02!CREB3L1;;chr17:46622205..46622218,-!p3@HOXB2!1.09!13.17!HOXB2;;chr16:86544113..86544145,+!p1@FOXF1!1.08!13.66!FOXF1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.81!HMGA2;;chr1:170632959..170632987,+!p4@PRRX1!1.05!11.22!PRRX1;;chr3:141087393..141087426,+!p3@ZBTB38!1.04!40.50!ZBTB38;;chr2:19558373..19558392,-!p1@OSR1!0.99!24.40!OSR1;;chr1:170633058..170633084,+!p5@PRRX1!0.99!8.78!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.98!40.50!FOXD1;;chr2:239756671..239756732,+!p1@TWIST2!0.98!27.81!TWIST2;;chr12:66218212..66218244,+!p5@HMGA2!0.97!12.20!HMGA2;;chr1:170632115..170632136,+!p9@PRRX1!0.97!8.29!PRRX1;;chr11:61520075..61520136,+!p1@C11orf9!0.96!17.57!C11orf9;;chr17:46655704..46655718,-!p2@HOXB4!0.96!12.20!HOXB4;;chrY:2803415..2803468,+!p1@ZFY!0.94!7.81!ZFY;;chr3:141105705..141105770,+!p4@ZBTB38!0.93!9.27!ZBTB38;;chr19:42636586..42636607,-!p1@POU2F2!0.92!20.98!POU2F2;;chr11:46299539..46299620,+!p2@CREB3L1!0.89!11.71!CREB3L1;;chr21:38071462..38071474,+!p3@SIM2!0.89!6.83!SIM2;;chr7:27183291..27183324,-!p1@HOXA5!0.89!6.83!HOXA5;;chr17:1958388..1958404,+!p1@HIC1!0.88!43.91!HIC1;;chr17:46622070..46622109,-!p1@HOXB2!0.88!15.13!HOXB2;;chr17:46688334..46688385,-!p1@HOXB7!0.88!9.76!HOXB7;;chr17:46621937..46621966,-!p2@HOXB2!0.87!18.05!HOXB2;;chr1:221052840..221052875,+!p4@HLX!0.87!7.81!HLX;;chr21:38071403..38071428,+!p2@SIM2!0.87!6.34!SIM2;;chr1:221052776..221052799,+!p1@HLX!0.86!11.71!HLX;;chr1:170632439..170632465,+!p11@PRRX1!0.84!5.86!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!0.84!5.86!TCF21;;chr20:50721803..50721857,-!p2@ZFP64!0.83!9.27!ZFP64;;chr18:53068911..53068935,-!p4@TCF4!0.82!6.34!TCF4;;chr6:34204921..34204939,+!p3@HMGA1!0.80!174.68!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!0.80!25.86!TOX2;;chr5:321810..321877,+!p1@AHRR!0.80!18.05!AHRR;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.29!ETV4;;chr17:46659728..46659749,-!p3@HOXB3!0.80!5.37!HOXB3;;chr1:170632137..170632172,+!p10@PRRX1!0.80!5.37!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.80!5.37!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.80!5.37!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.80!5.37!PRRX1;;chr1:151032860..151032918,+!p1@MLLT11!0.79!67.33!MLLT11;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.17!TOX2;;chr20:6748325..6748352,+!p1@BMP2!0.79!7.81!BMP2;;chr12:125002739..125002756,-!p6@NCOR2!0.78!7.81!NCOR2;;chr17:46675420..46675465,-!p3@HOXB6!0.78!5.86!HOXB6;;chr6:45296048..45296082,+!p1@RUNX2!0.78!5.86!RUNX2;;chr15:96869255..96869291,+!p6@NR2F2!0.77!9.27!NR2F2;;chr17:46622114..46622138,-!p4@HOXB2!0.77!7.81!HOXB2;;chr8:55370720..55370733,+!p2@SOX17!0.77!4.88!SOX17;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.76!HMGA2;;chr2:66662281..66662308,+!p1@MEIS1!0.75!17.57!MEIS1;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.37!BNC1;;chr3:157823517..157823562,-!p1@SHOX2!0.74!4.88!SHOX2;;chr1:170632028..170632043,+!p20@PRRX1!0.73!4.39!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.73!4.39!PRRX1;;chr17:46621146..46621180,-!p10@HOXB2!0.73!4.39!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.39!KDM5D;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.83!ETV4;;chr5:72744445..72744466,-!p2@FOXD1!0.71!7.32!FOXD1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.70!327.40!TAX1BP3;;chr6:21597514..21597578,+!p4@SOX4!0.70!7.32!SOX4;;chr6:21597370..21597408,+!p5@SOX4!0.70!6.83!SOX4;;chr7:26191809..26191890,+!p1@NFE2L3!0.69!21.96!NFE2L3;;chr15:96869206..96869220,+!p21@NR2F2!0.69!3.90!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.69!3.90!HOXB4;;chr2:102091144..102091183,-!p2@RFX8!0.69!3.90!RFX8;;chr12:66357214..66357233,+!p13@HMGA2!0.69!3.90!HMGA2;;chr14:29236169..29236216,+!p6@FOXG1!0.69!3.90!FOXG1;;chr1:170632250..170632277,+!p7@PRRX1!0.69!3.90!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!0.68!6.83!TCF12;;chr2:66662895..66662907,+!p3@MEIS1!0.68!4.88!MEIS1;;chr11:65686802..65686818,+!p6@DRAP1!0.67!6.83!DRAP1;;chr6:106534192..106534224,+!p1@PRDM1!0.66!11.22!PRDM1;;chr15:96876966..96877017,+!p12@NR2F2!0.66!5.37!NR2F2;;chr1:221052994..221053008,+!p6@HLX!0.66!4.39!HLX;;chr15:96874244..96874259,+!p5@NR2F2!0.65!9.27!NR2F2;;chr3:178789522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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002539;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 43:
|fonse_treatment_closure=EFO:0000369,FF:0000340,FF:0000556,FF:12750-136A5
|fonse_treatment_closure=EFO:0000369,FF:0000340,FF:0000556,FF:12750-136A5
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK32%2529.CNhs13369.12750-136A5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK32%2529.CNhs13369.12750-136A5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK32%2529.CNhs13369.12750-136A5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK32%2529.CNhs13369.12750-136A5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK32%2529.CNhs13369.12750-136A5.hg38.nobarcode.ctss.bed.gz
|id=FF:12750-136A5
|id=FF:12750-136A5
|is_a=EFO:0002091;;FF:0000556
|is_a=EFO:0002091;;FF:0000556
Line 46: Line 53:
|library_id=CNhs13369
|library_id=CNhs13369
|library_id_phase_based=2:CNhs13369
|library_id_phase_based=2:CNhs13369
|name=Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12750
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12750
|name=Aortic smooth muscle cell response to IL1b
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
Line 53: Line 64:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 88: Line 100:
|sample_strain=
|sample_strain=
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|sample_tissue=aorta
|timecourse=human_Aortic_smooth_muscle_cell_IL1b
|time= 00hr00min
|timecourse=AoSMC_response_to_IL1b
|top_motifs=ALX4:1.97343153572;NKX3-1:1.80310768102;FOXL1:1.79220108379;NKX2-2,8:1.77148191571;ONECUT1,2:1.67250043251;UFEwm:1.54823236717;EVI1:1.41258382106;TP53:1.37975114278;ZNF384:1.23417189836;NFE2L1:1.21222902553;GZF1:1.13163394631;ZBTB6:1.10496524936;ZNF238:1.09024239911;HOX{A4,D4}:0.972350563512;EN1,2:0.961749193671;RXR{A,B,G}:0.941339115504;HMGA1,2:0.932226711439;GATA4:0.931971022646;GCM1,2:0.927249550195;FOXD3:0.896603628663;MYBL2:0.890216543357;DBP:0.863753718584;NKX3-2:0.828462776795;KLF4:0.787476176258;HSF1,2:0.773593215669;NFATC1..3:0.76622925823;SRF:0.743699417727;XBP1:0.730510681983;TEAD1:0.69962397729;POU6F1:0.692551044565;TAL1_TCF{3,4,12}:0.673735898004;PPARG:0.670607637853;HOX{A5,B5}:0.665393347892;TFAP4:0.664443068678;ZIC1..3:0.662328409095;FOXQ1:0.659003538346;FOX{I1,J2}:0.65506712253;TLX1..3_NFIC{dimer}:0.644572162261;TEF:0.639447301618;POU1F1:0.613776605689;PAX4:0.578796482704;PAX8:0.573463404395;TFCP2:0.568593082746;HES1:0.563155798519;FOXM1:0.550043085064;NKX2-1,4:0.519840206978;CDX1,2,4:0.501894473573;GTF2A1,2:0.496779285936;GFI1B:0.485673733514;TBP:0.455993850917;NR3C1:0.404113502233;AIRE:0.403141526619;PAX1,9:0.401914377484;NKX6-1,2:0.399199253269;EBF1:0.379140330718;PRDM1:0.378708579655;HBP1_HMGB_SSRP1_UBTF:0.377316138641;NANOG{mouse}:0.376872826068;TLX2:0.351307344482;BPTF:0.331106836545;NFE2L2:0.322383653087;GLI1..3:0.319827135361;HMX1:0.318482727608;HAND1,2:0.312523466988;LHX3,4:0.285388421398;ATF6:0.28219498127;CDC5L:0.282094944389;POU3F1..4:0.267133986539;ADNP_IRX_SIX_ZHX:0.26671176162;GTF2I:0.23567047431;REST:0.232333368569;ALX1:0.216527443431;BACH2:0.196532336552;ZBTB16:0.18521573061;MAFB:0.176162494136;CRX:0.158671261781;AR:0.129291982505;NFIX:0.123711812745;HLF:0.106987836918;SOX2:0.0926939237935;FOS_FOS{B,L1}_JUN{B,D}:0.0896215865611;bHLH_family:0.0642266028169;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0582870907977;SOX17:0.0201764358405;NFKB1_REL_RELA:0.0197367240793;SPZ1:0.0114850147175;FOXP3:-0.0105952642625;MZF1:-0.0134068473159;HNF1A:-0.0204173597496;TBX4,5:-0.0463291956431;TFAP2B:-0.0690723475241;ARID5B:-0.102099054518;XCPE1{core}:-0.140020170044;PATZ1:-0.152651171719;MTE{core}:-0.153070122222;SMAD1..7,9:-0.160284467974;ESR1:-0.162669471771;STAT2,4,6:-0.173860924064;JUN:-0.177414253228;FOX{D1,D2}:-0.191840930637;PAX5:-0.200806049248;FOSL2:-0.202325647055;IKZF2:-0.204935379543;MEF2{A,B,C,D}:-0.216712277946;SOX{8,9,10}:-0.216760752579;RUNX1..3:-0.221851367593;MYFfamily:-0.22905762452;PITX1..3:-0.236249410496;NR6A1:-0.237407459497;LEF1_TCF7_TCF7L1,2:-0.238947919718;IKZF1:-0.240392771564;ELK1,4_GABP{A,B1}:-0.241019730277;SOX5:-0.24449936161;HIC1:-0.2456625474;NFE2:-0.25244767731;PAX6:-0.257885442917;TFAP2{A,C}:-0.262302909665;OCT4_SOX2{dimer}:-0.275466709124;PBX1:-0.283731100305;STAT5{A,B}:-0.286037756447;POU2F1..3:-0.28727156302;PRRX1,2:-0.29394301536;IRF1,2:-0.29418471669;NFIL3:-0.299367321266;MAZ:-0.303544007645;ZFP161:-0.306868517051;ELF1,2,4:-0.307521602735;RXRA_VDR{dimer}:-0.31739676182;MED-1{core}:-0.320812191556;DMAP1_NCOR{1,2}_SMARC:-0.326336684479;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.353926179563;NHLH1,2:-0.355188117145;ETS1,2:-0.365995188669;SPI1:-0.371858132711;MTF1:-0.38026998986;YY1:-0.381627087499;HOXA9_MEIS1:-0.381673428938;HNF4A_NR2F1,2:-0.385635676954;ZNF148:-0.407972651281;FOXP1:-0.410865910628;HOX{A6,A7,B6,B7}:-0.426471518217;LMO2:-0.429147822677;AHR_ARNT_ARNT2:-0.436255799054;RREB1:-0.458757251345;EGR1..3:-0.470845870416;CEBPA,B_DDIT3:-0.471193494694;ESRRA:-0.47233840059;HIF1A:-0.485123349903;NKX2-3_NKX2-5:-0.485799803385;ZNF143:-0.490900197989;SPIB:-0.492144319938;MYB:-0.492629068138;TFDP1:-0.502104135496;PAX2:-0.514040749917;RFX1:-0.538818096013;NRF1:-0.552215255124;ZEB1:-0.553223761786;POU5F1:-0.557032322715;TOPORS:-0.607535810852;SNAI1..3:-0.610833799439;SP1:-0.642536919165;ATF5_CREB3:-0.644206829423;FOX{F1,F2,J1}:-0.649962964987;GFI1:-0.651300699683;SREBF1,2:-0.671418191947;TGIF1:-0.678574685136;ATF2:-0.681019690716;CREB1:-0.687681342176;GATA6:-0.74736942979;FOXO1,3,4:-0.753493990707;CUX2:-0.762240005097;ZNF423:-0.770189283317;STAT1,3:-0.775472508968;T:-0.781951239471;NR1H4:-0.811998774872;E2F1..5:-0.879782672633;IRF7:-0.913604043717;PAX3,7:-0.925656798821;MYOD1:-0.990834272408;PDX1:-1.01728390555;NANOG:-1.1155455982;NR5A1,2:-1.12997531591;ATF4:-1.13349538463;FOXN1:-1.16033302566;RFX2..5_RFXANK_RFXAP:-1.16703634361;VSX1,2:-1.20164931238;RORA:-1.22287728534;BREu{core}:-1.23742022749;NFY{A,B,C}:-1.28428412346;FOXA2:-1.30410661774;EP300:-1.33205537494;RBPJ:-1.50009942631
|top_motifs=ALX4:1.97343153572;NKX3-1:1.80310768102;FOXL1:1.79220108379;NKX2-2,8:1.77148191571;ONECUT1,2:1.67250043251;UFEwm:1.54823236717;EVI1:1.41258382106;TP53:1.37975114278;ZNF384:1.23417189836;NFE2L1:1.21222902553;GZF1:1.13163394631;ZBTB6:1.10496524936;ZNF238:1.09024239911;HOX{A4,D4}:0.972350563512;EN1,2:0.961749193671;RXR{A,B,G}:0.941339115504;HMGA1,2:0.932226711439;GATA4:0.931971022646;GCM1,2:0.927249550195;FOXD3:0.896603628663;MYBL2:0.890216543357;DBP:0.863753718584;NKX3-2:0.828462776795;KLF4:0.787476176258;HSF1,2:0.773593215669;NFATC1..3:0.76622925823;SRF:0.743699417727;XBP1:0.730510681983;TEAD1:0.69962397729;POU6F1:0.692551044565;TAL1_TCF{3,4,12}:0.673735898004;PPARG:0.670607637853;HOX{A5,B5}:0.665393347892;TFAP4:0.664443068678;ZIC1..3:0.662328409095;FOXQ1:0.659003538346;FOX{I1,J2}:0.65506712253;TLX1..3_NFIC{dimer}:0.644572162261;TEF:0.639447301618;POU1F1:0.613776605689;PAX4:0.578796482704;PAX8:0.573463404395;TFCP2:0.568593082746;HES1:0.563155798519;FOXM1:0.550043085064;NKX2-1,4:0.519840206978;CDX1,2,4:0.501894473573;GTF2A1,2:0.496779285936;GFI1B:0.485673733514;TBP:0.455993850917;NR3C1:0.404113502233;AIRE:0.403141526619;PAX1,9:0.401914377484;NKX6-1,2:0.399199253269;EBF1:0.379140330718;PRDM1:0.378708579655;HBP1_HMGB_SSRP1_UBTF:0.377316138641;NANOG{mouse}:0.376872826068;TLX2:0.351307344482;BPTF:0.331106836545;NFE2L2:0.322383653087;GLI1..3:0.319827135361;HMX1:0.318482727608;HAND1,2:0.312523466988;LHX3,4:0.285388421398;ATF6:0.28219498127;CDC5L:0.282094944389;POU3F1..4:0.267133986539;ADNP_IRX_SIX_ZHX:0.26671176162;GTF2I:0.23567047431;REST:0.232333368569;ALX1:0.216527443431;BACH2:0.196532336552;ZBTB16:0.18521573061;MAFB:0.176162494136;CRX:0.158671261781;AR:0.129291982505;NFIX:0.123711812745;HLF:0.106987836918;SOX2:0.0926939237935;FOS_FOS{B,L1}_JUN{B,D}:0.0896215865611;bHLH_family:0.0642266028169;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0582870907977;SOX17:0.0201764358405;NFKB1_REL_RELA:0.0197367240793;SPZ1:0.0114850147175;FOXP3:-0.0105952642625;MZF1:-0.0134068473159;HNF1A:-0.0204173597496;TBX4,5:-0.0463291956431;TFAP2B:-0.0690723475241;ARID5B:-0.102099054518;XCPE1{core}:-0.140020170044;PATZ1:-0.152651171719;MTE{core}:-0.153070122222;SMAD1..7,9:-0.160284467974;ESR1:-0.162669471771;STAT2,4,6:-0.173860924064;JUN:-0.177414253228;FOX{D1,D2}:-0.191840930637;PAX5:-0.200806049248;FOSL2:-0.202325647055;IKZF2:-0.204935379543;MEF2{A,B,C,D}:-0.216712277946;SOX{8,9,10}:-0.216760752579;RUNX1..3:-0.221851367593;MYFfamily:-0.22905762452;PITX1..3:-0.236249410496;NR6A1:-0.237407459497;LEF1_TCF7_TCF7L1,2:-0.238947919718;IKZF1:-0.240392771564;ELK1,4_GABP{A,B1}:-0.241019730277;SOX5:-0.24449936161;HIC1:-0.2456625474;NFE2:-0.25244767731;PAX6:-0.257885442917;TFAP2{A,C}:-0.262302909665;OCT4_SOX2{dimer}:-0.275466709124;PBX1:-0.283731100305;STAT5{A,B}:-0.286037756447;POU2F1..3:-0.28727156302;PRRX1,2:-0.29394301536;IRF1,2:-0.29418471669;NFIL3:-0.299367321266;MAZ:-0.303544007645;ZFP161:-0.306868517051;ELF1,2,4:-0.307521602735;RXRA_VDR{dimer}:-0.31739676182;MED-1{core}:-0.320812191556;DMAP1_NCOR{1,2}_SMARC:-0.326336684479;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.353926179563;NHLH1,2:-0.355188117145;ETS1,2:-0.365995188669;SPI1:-0.371858132711;MTF1:-0.38026998986;YY1:-0.381627087499;HOXA9_MEIS1:-0.381673428938;HNF4A_NR2F1,2:-0.385635676954;ZNF148:-0.407972651281;FOXP1:-0.410865910628;HOX{A6,A7,B6,B7}:-0.426471518217;LMO2:-0.429147822677;AHR_ARNT_ARNT2:-0.436255799054;RREB1:-0.458757251345;EGR1..3:-0.470845870416;CEBPA,B_DDIT3:-0.471193494694;ESRRA:-0.47233840059;HIF1A:-0.485123349903;NKX2-3_NKX2-5:-0.485799803385;ZNF143:-0.490900197989;SPIB:-0.492144319938;MYB:-0.492629068138;TFDP1:-0.502104135496;PAX2:-0.514040749917;RFX1:-0.538818096013;NRF1:-0.552215255124;ZEB1:-0.553223761786;POU5F1:-0.557032322715;TOPORS:-0.607535810852;SNAI1..3:-0.610833799439;SP1:-0.642536919165;ATF5_CREB3:-0.644206829423;FOX{F1,F2,J1}:-0.649962964987;GFI1:-0.651300699683;SREBF1,2:-0.671418191947;TGIF1:-0.678574685136;ATF2:-0.681019690716;CREB1:-0.687681342176;GATA6:-0.74736942979;FOXO1,3,4:-0.753493990707;CUX2:-0.762240005097;ZNF423:-0.770189283317;STAT1,3:-0.775472508968;T:-0.781951239471;NR1H4:-0.811998774872;E2F1..5:-0.879782672633;IRF7:-0.913604043717;PAX3,7:-0.925656798821;MYOD1:-0.990834272408;PDX1:-1.01728390555;NANOG:-1.1155455982;NR5A1,2:-1.12997531591;ATF4:-1.13349538463;FOXN1:-1.16033302566;RFX2..5_RFXANK_RFXAP:-1.16703634361;VSX1,2:-1.20164931238;RORA:-1.22287728534;BREu{core}:-1.23742022749;NFY{A,B,C}:-1.28428412346;FOXA2:-1.30410661774;EP300:-1.33205537494;RBPJ:-1.50009942631
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12750-136A5;search_select_hide=table117:FF:12750-136A5
}}
}}

Latest revision as of 18:44, 4 June 2020

Name:Aortic smooth muscle cell response to IL1b
Species:Human (Homo sapiens)
Library ID:CNhs13369
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell, vascular associated
cell lineNA
companyNA
collaborationLevon Khachigian (University of New South Wales)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005935
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13369 CAGE DRX008582 DRR009454
Accession ID Hg19

Library idBAMCTSS
CNhs13369 DRZ000879 DRZ002264
Accession ID Hg38

Library idBAMCTSS
CNhs13369 DRZ012229 DRZ013614
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.173
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.325
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.691
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0488
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.21
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.238
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.62
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.109
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.097
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.248
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.691
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00548
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.591
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.413
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.406
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.47
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.173
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.836
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.99
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.392
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.594
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13369

Jaspar motifP-value
MA0002.20.933
MA0003.10.545
MA0004.10.54
MA0006.10.14
MA0007.10.739
MA0009.10.724
MA0014.10.955
MA0017.10.483
MA0018.21.43274e-6
MA0019.10.806
MA0024.13.52368e-6
MA0025.15.40684e-4
MA0027.10.917
MA0028.10.182
MA0029.10.501
MA0030.10.0942
MA0031.10.444
MA0035.20.164
MA0038.17.85364e-4
MA0039.20.0223
MA0040.10.496
MA0041.10.868
MA0042.10.804
MA0043.11.46873e-6
MA0046.10.166
MA0047.20.719
MA0048.10.321
MA0050.12.65406e-4
MA0051.10.0362
MA0052.10.03
MA0055.10.772
MA0057.10.332
MA0058.10.319
MA0059.10.302
MA0060.13.31689e-13
MA0061.10.198
MA0062.22.18724e-4
MA0065.20.381
MA0066.10.0365
MA0067.10.00103
MA0068.10.823
MA0069.10.354
MA0070.10.641
MA0071.10.972
MA0072.10.932
MA0073.10.83
MA0074.10.216
MA0076.10.0225
MA0077.10.165
MA0078.10.124
MA0079.20.0757
MA0080.21.43234e-5
MA0081.10.0337
MA0083.10.048
MA0084.10.19
MA0087.10.793
MA0088.10.381
MA0090.10.151
MA0091.10.134
MA0092.10.181
MA0093.10.444
MA0099.20.145
MA0100.10.351
MA0101.10.903
MA0102.20.163
MA0103.10.448
MA0104.20.293
MA0105.16.32179e-4
MA0106.12.22003e-4
MA0107.10.865
MA0108.20.664
MA0111.10.741
MA0112.20.00283
MA0113.10.597
MA0114.10.806
MA0115.10.608
MA0116.10.0317
MA0117.10.715
MA0119.10.0385
MA0122.10.931
MA0124.10.959
MA0125.10.0617
MA0131.10.238
MA0135.10.0342
MA0136.13.86975e-5
MA0137.20.0268
MA0138.20.186
MA0139.10.27
MA0140.10.333
MA0141.10.451
MA0142.10.951
MA0143.10.35
MA0144.10.629
MA0145.10.36
MA0146.10.815
MA0147.10.612
MA0148.10.912
MA0149.10.106
MA0150.10.706
MA0152.10.144
MA0153.10.209
MA0154.10.0777
MA0155.10.274
MA0156.10.0049
MA0157.10.99
MA0159.10.498
MA0160.10.389
MA0162.10.0308
MA0163.14.02076e-6
MA0164.10.738
MA0258.10.049
MA0259.10.186



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13369

Novel motifP-value
10.202
100.552
1000.443
1010.898
1020.933
1030.227
1040.828
1050.311
1060.00551
1070.0842
1080.239
1090.229
110.0768
1100.21
1110.103
1120.182
1130.0826
1140.0206
1150.0895
1160.0311
1170.347
1180.339
1190.114
120.997
1200.0146
1210.766
1220.106
1230.253
1240.879
1250.323
1260.597
1270.982
1280.0435
1290.408
130.506
1300.313
1310.297
1320.813
1330.838
1340.52
1350.387
1360.667
1370.167
1380.931
1390.193
140.916
1400.218
1410.736
1420.623
1430.022
1440.302
1450.135
1460.836
1470.153
1480.0888
1490.0556
150.392
1500.119
1510.757
1520.0407
1530.618
1540.829
1550.0387
1560.661
1570.269
1580.0314
1590.161
160.094
1600.124
1610.912
1620.0844
1630.95
1640.0168
1650.74
1660.42
1670.546
1680.456
1690.0705
170.115
180.089
190.0458
20.535
200.79
210.297
220.501
230.129
240.942
250.33
260.0858
270.312
280.456
290.0932
30.234
300.901
310.306
321.27625e-4
330.655
340.854
350.157
360.868
370.0179
380.477
390.297
40.953
400.929
410.618
420.847
430.189
440.0143
450.548
460.0513
470.289
480.169
490.449
50.417
500.832
510.635
520.533
530.432
540.523
550.101
560.649
570.384
580.821
590.0679
60.428
600.387
610.426
620.429
630.191
640.576
650.124
660.548
670.475
680.383
690.787
70.738
700.0418
710.216
720.777
730.0193
740.0376
750.349
760.399
770.0167
780.556
790.00343
80.0179
800.273
810.291
820.0269
830.852
840.878
850.0513
860.647
870.136
880.16
890.141
90.422
900.178
910.168
920.17
930.486
940.33
950.243
960.709
970.65
980.768
990.00807



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13369


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000340 (IL1-beta treatment sample)
0000556 (human Aortic Smooth Muscle cells 0min after treatment with IL1b sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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