FF:10692-109F8: Difference between revisions

Latest revision as of 14:33, 3 June 2020

Name:	large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF
Species:	Human (Homo sapiens)
Library ID:	CNhs11825
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	NA
sex	female
age	50
cell type	unclassifiable
cell line	SKG-II-SF
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005840

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11825		CAGE		DRX007913		DRR008785

Accession ID Hg19

Library id		BAM		CTSS
CNhs11825		DRZ000210		DRZ001595

Accession ID Hg38

Library id		BAM		CTSS
CNhs11825		DRZ011560		DRZ012945

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0335
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.435
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0762
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0167
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.015
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0149
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0756
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.629
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0864
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	5.800866e-4
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0762
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.463
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.124
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0387
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11825

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00609
MA0003.1	MA0003.1	0.333
MA0004.1	MA0004.1	0.942
MA0006.1	MA0006.1	0.796
MA0007.1	MA0007.1	0.53
MA0009.1	MA0009.1	0.8
MA0014.1	MA0014.1	0.136
MA0017.1	MA0017.1	0.0223
MA0018.2	MA0018.2	0.317
MA0019.1	MA0019.1	0.451
MA0024.1	MA0024.1	0.001
MA0025.1	MA0025.1	0.168
MA0027.1	MA0027.1	0.293
MA0028.1	MA0028.1	0.101
MA0029.1	MA0029.1	0.041
MA0030.1	MA0030.1	0.194
MA0031.1	MA0031.1	0.456
MA0035.2	MA0035.2	0.585
MA0038.1	MA0038.1	0.00559
MA0039.2	MA0039.2	0.013
MA0040.1	MA0040.1	0.74
MA0041.1	MA0041.1	0.504
MA0042.1	MA0042.1	0.442
MA0043.1	MA0043.1	0.0452
MA0046.1	MA0046.1	0.954
MA0047.2	MA0047.2	0.994
MA0048.1	MA0048.1	0.843
MA0050.1	MA0050.1	0.35
MA0051.1	MA0051.1	0.909
MA0052.1	MA0052.1	0.382
MA0055.1	MA0055.1	0.0733
MA0057.1	MA0057.1	0.931
MA0058.1	MA0058.1	0.595
MA0059.1	MA0059.1	0.362
MA0060.1	MA0060.1	2.79108e-9
MA0061.1	MA0061.1	0.0138
MA0062.2	MA0062.2	0.14
MA0065.2	MA0065.2	0.0484
MA0066.1	MA0066.1	0.00381
MA0067.1	MA0067.1	0.815
MA0068.1	MA0068.1	0.576
MA0069.1	MA0069.1	0.487
MA0070.1	MA0070.1	0.719
MA0071.1	MA0071.1	0.0754
MA0072.1	MA0072.1	0.225
MA0073.1	MA0073.1	0.965
MA0074.1	MA0074.1	0.158
MA0076.1	MA0076.1	0.0521
MA0077.1	MA0077.1	0.782
MA0078.1	MA0078.1	0.349
MA0079.2	MA0079.2	0.296
MA0080.2	MA0080.2	7.15372e-9
MA0081.1	MA0081.1	0.266
MA0083.1	MA0083.1	0.921
MA0084.1	MA0084.1	0.886
MA0087.1	MA0087.1	0.956
MA0088.1	MA0088.1	0.399
MA0090.1	MA0090.1	0.0262
MA0091.1	MA0091.1	0.0279
MA0092.1	MA0092.1	0.168
MA0093.1	MA0093.1	0.991
MA0099.2	MA0099.2	0.0299
MA0100.1	MA0100.1	0.931
MA0101.1	MA0101.1	0.347
MA0102.2	MA0102.2	0.793
MA0103.1	MA0103.1	0.0336
MA0104.2	MA0104.2	0.531
MA0105.1	MA0105.1	1.59175e-6
MA0106.1	MA0106.1	0.0539
MA0107.1	MA0107.1	0.206
MA0108.2	MA0108.2	0.0419
MA0111.1	MA0111.1	0.487
MA0112.2	MA0112.2	9.67941e-5
MA0113.1	MA0113.1	0.0558
MA0114.1	MA0114.1	0.161
MA0115.1	MA0115.1	0.893
MA0116.1	MA0116.1	3.21131e-4
MA0117.1	MA0117.1	0.555
MA0119.1	MA0119.1	0.159
MA0122.1	MA0122.1	0.538
MA0124.1	MA0124.1	0.827
MA0125.1	MA0125.1	0.135
MA0131.1	MA0131.1	0.536
MA0135.1	MA0135.1	0.549
MA0136.1	MA0136.1	9.35734e-5
MA0137.2	MA0137.2	0.665
MA0138.2	MA0138.2	0.0292
MA0139.1	MA0139.1	0.266
MA0140.1	MA0140.1	0.978
MA0141.1	MA0141.1	0.0238
MA0142.1	MA0142.1	0.487
MA0143.1	MA0143.1	0.366
MA0144.1	MA0144.1	0.415
MA0145.1	MA0145.1	0.266
MA0146.1	MA0146.1	0.446
MA0147.1	MA0147.1	0.509
MA0148.1	MA0148.1	0.897
MA0149.1	MA0149.1	0.517
MA0150.1	MA0150.1	0.485
MA0152.1	MA0152.1	0.547
MA0153.1	MA0153.1	0.913
MA0154.1	MA0154.1	0.00435
MA0155.1	MA0155.1	0.216
MA0156.1	MA0156.1	0.433
MA0157.1	MA0157.1	0.392
MA0159.1	MA0159.1	0.183
MA0160.1	MA0160.1	0.241
MA0162.1	MA0162.1	0.52
MA0163.1	MA0163.1	1.68337e-5
MA0164.1	MA0164.1	0.696
MA0258.1	MA0258.1	3.59877e-4
MA0259.1	MA0259.1	0.98

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11825

Novel motif	Logo	P-value
1	1	0.052
10	10	0.201
100	100	0.739
101	101	0.547
102	102	0.568
103	103	0.225
104	104	0.633
105	105	0.549
106	106	0.112
107	107	0.722
108	108	0.7
109	109	0.942
11	11	0.0565
110	110	0.299
111	111	0.198
112	112	0.148
113	113	0.201
114	114	0.0157
115	115	0.712
116	116	0.47
117	117	0.264
118	118	0.638
119	119	0.0901
12	12	0.995
120	120	0.394
121	121	0.211
122	122	0.262
123	123	0.993
124	124	0.00563
125	125	0.15
126	126	0.645
127	127	0.616
128	128	0.00936
129	129	0.177
13	13	0.873
130	130	0.259
131	131	0.949
132	132	0.632
133	133	0.231
134	134	0.164
135	135	0.0104
136	136	0.0884
137	137	0.355
138	138	0.802
139	139	0.00265
14	14	0.499
140	140	0.265
141	141	0.6
142	142	0.263
143	143	0.012
144	144	0.163
145	145	0.15
146	146	0.917
147	147	0.846
148	148	0.0424
149	149	0.0167
15	15	0.227
150	150	0.85
151	151	0.435
152	152	0.875
153	153	0.352
154	154	0.77
155	155	0.695
156	156	0.513
157	157	0.233
158	158	0.325
159	159	0.594
16	16	0.369
160	160	0.155
161	161	0.667
162	162	0.823
163	163	0.846
164	164	0.625
165	165	0.947
166	166	0.835
167	167	0.891
168	168	0.385
169	169	0.0474
17	17	0.231
18	18	0.138
19	19	0.103
2	2	0.548
20	20	0.2
21	21	0.746
22	22	0.131
23	23	0.377
24	24	0.784
25	25	0.491
26	26	0.198
27	27	0.0604
28	28	0.841
29	29	0.372
3	3	0.046
30	30	0.739
31	31	0.352
32	32	0.00445
33	33	0.692
34	34	0.402
35	35	0.0243
36	36	0.922
37	37	0.0976
38	38	0.509
39	39	0.59
4	4	0.758
40	40	0.476
41	41	0.0562
42	42	0.312
43	43	0.0765
44	44	0.014
45	45	0.701
46	46	0.0209
47	47	0.193
48	48	0.222
49	49	0.143
5	5	0.0689
50	50	0.771
51	51	0.271
52	52	0.679
53	53	0.6
54	54	0.404
55	55	0.616
56	56	0.584
57	57	0.639
58	58	0.273
59	59	0.0896
6	6	0.725
60	60	0.229
61	61	0.859
62	62	0.0501
63	63	0.44
64	64	0.306
65	65	0.215
66	66	0.159
67	67	0.593
68	68	0.334
69	69	0.264
7	7	0.49
70	70	0.0963
71	71	0.133
72	72	0.438
73	73	0.559
74	74	0.0348
75	75	0.209
76	76	0.832
77	77	0.181
78	78	0.941
79	79	0.00195
8	8	0.0432
80	80	0.669
81	81	0.142
82	82	0.0314
83	83	0.315
84	84	0.939
85	85	0.00106
86	86	0.283
87	87	0.207
88	88	0.912
89	89	0.11
9	9	0.177
90	90	0.00987
91	91	0.157
92	92	0.0377
93	93	0.104
94	94	0.025
95	95	0.729
96	96	0.11
97	97	0.755
98	98	0.0664
99	99	0.975

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11825

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102202 lung squamous cell carcinoma cell line sample
FF:0102205 large cell lung cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
1749 (squamous cell carcinoma)
4556 (lung large cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102205 (large cell lung cancer cell line sample)
0102202 (lung squamous cell carcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:10692-109F8
+|DRA_sample_Accession=CAGE@SAMD00005840
-|name=large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF
+|accession_numbers=CAGE;DRX007913;DRR008785;DRZ000210;DRZ001595;DRZ011560;DRZ012945
-|sample_id=10692
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
-|rna_tube_id=109F8
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000082,CL:0000255
-|rna_box=109
+|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:3905,DOID:3908,DOID:1749,DOID:4556
-|rna_position=F8
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0100353,FF:0101120,FF:0100762,FF:0102205,FF:0102202
-|sample_cell_lot=
+|comment=
-|sample_cell_catalog=RCB0685
+|created_by=
-|sample_company=RIKEN Bioresource centre
+|creation_date=
-|rna_lot_number=
+|data_phase=2
-|rna_catalog_number=
+|datafreeze_phase=2
-|sample_species=Human (Homo sapiens)
+|def=
-|sample_strain=
+|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.21!161.21!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!2.11!127.24!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.94!137.41!FOXQ1;;chr5:2751762..2751784,-!p1@IRX2!1.91!80.80!IRX2;;chr1:209979467..209979494,-!p1@IRF6!1.90!87.13!IRF6;;chr17:7492684..7492778,-!p2@SOX15!1.67!94.42!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.65!71.01!TFAP2A;;chr9:100615499..100615519,+!p1@FOXE1!1.63!41.84!FOXE1;;chr2:176969228..176969260,+!p1@HOXD11!1.56!35.50!HOXD11;;chr15:83953397..83953425,-!p1@BNC1!1.49!34.35!BNC1;;chr6:10415276..10415341,-!p2@TFAP2A!1.46!34.16!TFAP2A;;chr10:8096772..8096787,+!p2@GATA3!1.45!31.67!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.42!214.75!PPP1R13L;;chr2:46524897..46524911,+!p2@EPAS1!1.41!67.36!EPAS1;;chr8:102504651..102504683,+!p1@GRHL2!1.41!24.95!GRHL2;;chr5:137804405..137804444,+!p3@EGR1!1.38!27.64!EGR1;;chr10:8096631..8096660,+!p1@GATA3!1.38!27.44!GATA3;;chr12:80084737..80084763,-!p3@PAWR!1.35!78.69!PAWR;;chr10:48355030..48355090,+!p1@ZNF488!1.35!27.25!ZNF488;;chr5:2751785..2751808,-!p2@IRX2!1.31!19.19!IRX2;;chr1:6479968..6479986,-!p1@HES2!1.29!18.62!HES2;;chr3:189507432..189507459,+!p1@TP63!1.28!17.85!TP63;;chr12:77459306..77459365,-!p1@E2F7!1.27!216.86!E2F7;;chr11:65667884..65667895,-!p2@FOSL1!1.24!63.14!FOSL1;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.92!TFAP2C;;chr2:176969179..176969226,+!p2@HOXD11!1.24!16.31!HOXD11;;chr7:27205136..27205164,-!p1@HOXA9!1.24!16.31!HOXA9;;chr17:46687959..46688007,-!p2@HOXB7!1.23!22.26!HOXB7;;chr5:137801160..137801176,+!p1@EGR1!1.22!1527.26!EGR1;;chr3:169381420..169381535,-!p1@MECOM!1.17!16.12!MECOM;;chr15:96869255..96869291,+!p6@NR2F2!1.16!24.57!NR2F2;;chr11:65667846..65667868,-!p1@FOSL1!1.15!340.27!FOSL1;;chr17:70117153..70117174,+!p1@SOX9!1.15!133.76!SOX9;;chr11:34642612..34642646,+!p1@EHF!1.15!13.05!EHF;;chr8:67525443..67525459,-!p2@MYBL1!1.14!19.19!MYBL1;;chr8:49833978..49833996,-!p1@SNAI2!1.13!253.90!SNAI2;;chr5:137804357..137804390,+!p4@EGR1!1.10!13.63!EGR1;;chr9:124976185..124976212,-!p4@LHX6!1.10!11.71!LHX6;;chr6:10412576..10412599,-!p5@TFAP2A!1.10!11.51!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!1.10!11.51!TFAP2A;;chr5:137804484..137804498,+!p2@EGR1!1.09!45.87!EGR1;;chr18:19749541..19749557,+!p1@GATA6!1.09!35.31!GATA6;;chr5:50679228..50679288,+!p1@ISL1!1.09!11.32!ISL1;;chr8:49833948..49833973,-!p2@SNAI2!1.08!70.62!SNAI2;;chr12:80084303..80084332,-!p1@PAWR!1.08!64.87!PAWR;;chr7:27135591..27135658,-!p1@HOXA1!1.08!21.49!HOXA1;;chr13:73633131..73633149,+!p1@KLF5!1.07!114.38!KLF5;;chr19:33793430..33793447,-!p1@CEBPA!1.07!46.25!CEBPA;;chr8:60031682..60031710,-!p2@TOX!1.07!17.46!TOX;;chr1:212782094..212782109,+!p1@ATF3!1.06!284.61!ATF3;;chr7:27153454..27153469,-!p2@HOXA3!1.06!10.36!HOXA3;;chr19:33865009..33865090,+!p3@CEBPG!1.05!13.82!CEBPG;;chr11:65668011..65668020,-!p3@FOSL1!1.05!10.17!FOSL1;;chr6:10412392..10412409,-!p4@TFAP2A!1.04!11.32!TFAP2A;;chr19:33864571..33864596,+!p2@CEBPG!1.03!24.37!CEBPG;;chr7:27192185..27192209,-!p1@HOXA3!1.03!9.79!HOXA3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.03!9.79!LRRFIP1;;chr19:45971246..45971265,+!p1@FOSB!1.01!174.26!FOSB;;chr17:48072574..48072597,-!p1@DLX3!1.01!9.21!DLX3;;chr6:10413188..10413249,-!p7@TFAP2A!1.00!9.02!TFAP2A;;chr21:36421535..36421610,-!p2@RUNX1!0.99!31.86!RUNX1;;chr7:28448965..28448994,+!p2@CREB5!0.99!31.47!CREB5;;chr15:67418047..67418093,+!p4@SMAD3!0.99!11.13!SMAD3;;chr17:41277372..41277418,-!p1@BRCA1!0.98!31.47!BRCA1;;chr7:27205106..27205134,-!p2@HOXA9!0.98!8.44!HOXA9;;chr22:24093154..24093183,-!p2@ZNF70!0.98!8.44!ZNF70;;chr11:65554528..65554546,+!p1@OVOL1!0.98!8.44!OVOL1;;chr8:60031619..60031676,-!p1@TOX!0.97!18.62!TOX;;chr3:32023232..32023273,+!p1@ZNF860!0.97!11.90!ZNF860;;chr17:46682321..46682362,-!p1@HOXB6!0.97!8.25!HOXB6;;chr7:19157043..19157088,-!p2@TWIST1!0.96!20.73!TWIST1;;chr10:8095593..8095625,+!p3@GATA3!0.96!9.60!GATA3;;chr3:12329358..12329393,+!p3@PPARG!0.95!20.15!PPARG;;chr12:54785074..54785122,-!p2@ZNF385A!0.95!12.47!ZNF385A;;chr1:158979872..158979898,+!p3@IFI16!0.94!24.76!IFI16;;chr21:38071430..38071456,+!p1@SIM2!0.94!7.68!SIM2;;chr17:46703687..46703740,-!p1@HOXB9!0.94!7.68!HOXB9;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.94!7.68!ZBED1;;chr9:110252035..110252057,-!p1@KLF4!0.93!123.98!KLF4;;chr2:172967621..172967637,-!p1@DLX2!0.92!20.15!DLX2;;chr20:50721803..50721857,-!p2@ZFP64!0.92!11.90!ZFP64;;chr7:27224842..27224872,-!p1@HOXA11!0.92!7.29!HOXA11;;chr2:122042770..122042785,-!p1@TFCP2L1!0.92!7.29!TFCP2L1;;chr19:12163769..12163798,-!p1@ZNF878!0.90!9.21!ZNF878;;chr15:67418119..67418162,+!p5@SMAD3!0.90!7.68!SMAD3;;chr19:45579725..45579743,-!p1@ZNF296!0.89!31.67!ZNF296;;chr2:46524878..46524891,+!p3@EPAS1!0.89!12.09!EPAS1;;chr6:1312155..1312187,+!p2@FOXQ1!0.89!6.72!FOXQ1;;chr9:124976154..124976177,-!p5@LHX6!0.88!6.53!LHX6;;chr14:61116183..61116208,-!p1@SIX1!0.87!25.72!SIX1;;chr15:96869114..96869160,+!p11@NR2F2!0.87!8.83!NR2F2;;chr3:141868357..141868393,-!p3@TFDP2!0.86!43.37!TFDP2;;chr5:134369905..134369972,-!p1@PITX1!0.86!9.79!PITX1;;chr14:75745523..75745537,+!p1@FOS!0.85!781.09!FOS;;chr2:10183651..10183713,+!p1@KLF11!0.85!47.21!KLF11;;chr8:99956662..99956684,+!p1@OSR2!0.85!9.60!OSR2;;chr14:37131058..37131139,+!p1@PAX9!0.85!6.14!PAX9;;chr3:69788576..69788648,+!p1@MITF!0.84!33.39!MITF;;chr11:65686732..65686756,+!p2@DRAP1!0.84!26.68!DRAP1;;chr11:65554563..65554576,+!p2@OVOL1!0.84!5.95!OVOL1;;chr7:27196267..27196311,-!p1@HOXA7!0.84!5.95!HOXA7;;chr6:31126291..31126399,+!p1@TCF19!0.83!59.30!TCF19;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.60!HMGA2;;chr3:12329397..12329433,+!p2@PPARG!0.83!13.63!PPARG;;chr1:201979743..201979762,+!p1@ELF3!0.83!5.76!ELF3;;chr1:209979411..209979433,-!p2@IRF6!0.83!5.76!IRF6;;chr9:14314131..14314147,-!p2@NFIB!0.82!33.59!NFIB;;chr1:197886461..197886558,+!p1@LHX9!0.82!5.57!LHX9;;chr2:171571827..171571853,+!p1@SP5!0.82!5.57!SP5;;chr2:177053386..177053402,+!p1@HOXD1!0.82!5.57!HOXD1;;chr2:45236540..45236577,-!p1@SIX2!0.82!5.57!SIX2;;chr1:935398..935465,-!p2@HES4!0.81!11.90!HES4;;chr6:126102292..126102329,+!p3@NCOA7!0.80!18.62!NCOA7;;chr18:19749517..19749531,+!p3@GATA6!0.80!9.98!GATA6;;chr8:67525524..67525543,-!p3@MYBL1!0.80!9.21!MYBL1;;chr12:80084279..80084293,-!p8@PAWR!0.80!9.21!PAWR;;chr15:96869222..96869251,+!p18@NR2F2!0.80!6.33!NR2F2;;chr3:138665937..138665968,-!p1@FOXL2!0.80!5.37!FOXL2;;chr3:69915385..69915438,+!p3@MITF!0.80!5.37!MITF;;chr8:60031762..60031803,-!p3@TOX!0.79!7.68!TOX;;chr1:59249688..59249703,-!p3@JUN!0.78!33.01!JUN;;chr6:1389789..1389821,+!p1@FOXF2!0.78!7.10!FOXF2;;chr1:27023752..27023799,+!p4@ARID1A!0.78!6.91!ARID1A;;chr1:3569072..3569093,+!p1@TP73!0.78!4.99!TP73;;chr5:43120995..43121052,+!p1@ZNF131!0.77!27.06!ZNF131;;chr20:2673383..2673441,+!p1@EBF4!0.77!8.06!EBF4;;chr3:24536253..24536328,-!p1@THRB!0.76!9.60!THRB;;chr11:65686802..65686818,+!p6@DRAP1!0.76!8.64!DRAP1;;chr4:109089095..109089144,-!p6@LEF1!0.76!4.80!LEF1;;chr17:46703212..46703238,-!p2@HOXB9!0.76!4.80!HOXB9;;chr17:48046543..48046575,+!p2@DLX4!0.76!4.80!DLX4;;chr5:43067636..43067674,+!p6@ZNF131!0.75!6.53!ZNF131;;chr9:110251836..110251887,-!p4@KLF4!0.75!6.33!KLF4;;chr15:83953373..83953386,-!p2@BNC1!0.75!4.61!BNC1;;chr15:96869206..96869220,+!p21@NR2F2!0.75!4.61!NR2F2;;chr3:138665969..138665993,-!p2@FOXL2!0.75!4.61!FOXL2;;chr5:174151553..174151610,+!p1@MSX2!0.74!7.87!MSX2;;chr18:19749386..19749404,+!p2@GATA6!0.74!6.72!GATA6;;chr12:66218378..66218401,+!p6@HMGA2!0.73!7.10!HMGA2;;chr12:54380404..54380433,+!p3@HOXC10!0.73!4.41!HOXC10;;chr3:69915369..69915381,+!p4@MITF!0.73!4.41!MITF;;chr8:102504690..102504704,+!p3@GRHL2!0.73!4.41!GRHL2;;chr20:32274179..32274213,-!p1@E2F1!0.72!31.28!E2F1;;chr13:100634031..100634045,+!p1@ZIC2!0.72!4.22!ZIC2;;chr6:10419824..10419840,-!p9@TFAP2A!0.72!4.22!TFAP2A;;chr15:96874012..96874042,+!p2@NR2F2!0.71!41.84!NR2F2;;chr20:42295713..42295738,+!p2@MYBL2!0.71!27.06!MYBL2;;chr10:64576105..64576133,-!p1@EGR2!0.71!9.21!EGR2;;chr2:208030886..208030917,-!p4@KLF7!0.71!8.64!KLF7;;chr14:33408072..33408114,+!p2@NPAS3!0.71!4.99!NPAS3;;chr20:42295745..42295765,+!p1@MYBL2!0.70!74.27!MYBL2;;chr12:80084768..80084821,-!p2@PAWR!0.70!31.47!PAWR;;chr1:59249645..59249656,-!p4@JUN!0.70!11.13!JUN;;chr12:80084167..80084197,-!p5@PAWR!0.70!10.36!PAWR;;chr1:158979851..158979865,+!p5@IFI16!0.70!9.60!IFI16;;chr3:157823517..157823562,-!p1@SHOX2!0.70!4.41!SHOX2;;chr12:2986275..2986363,-!p1@FOXM1!0.68!43.76!FOXM1;;chr12:66218255..66218304,+!p3@HMGA2!0.68!11.32!HMGA2;;chr1:158969752..158969780,+!p6@IFI16!0.68!7.10!IFI16;;chr17:45928521..45928539,-!p1@SP6!0.68!3.84!SP6;;chr17:46703240..46703257,-!p6@HOXB9!0.68!3.84!HOXB9;;chr10:28032421..28032494,-!p2@MKX!0.68!3.84!MKX;;chr14:37051798..37051831,-!p1@NKX2-8!0.68!3.84!NKX2-8;;chr3:24536332..24536358,-!p2@THRB!0.68!3.84!THRB;;chr19:33864600..33864732,+!p1@CEBPG!0.67!119.95!CEBPG;;chr12:52445218..52445237,+!p1@NR4A1!0.67!53.35!NR4A1;;chr6:34205372..34205412,+!p5@HMGA1!0.67!21.30!HMGA1;;chr6:10419884..10419898,-!p11@TFAP2A!0.67!3.65!TFAP2A;;chr10:28032548..28032559,-!p7@MKX!0.67!3.65!MKX;;chr19:45908278..45908282,-!p5@PPP1R13L!0.67!3.65!PPP1R13L;;chr21:38071403..38071428,+!p2@SIM2!0.67!3.65!SIM2;;chr3:141087562..141087594,+!p12@ZBTB38!0.67!3.65!ZBTB38;;chr1:59249707..59249727,-!p1@JUN!0.66!175.03!JUN;;chr22:29196547..29196563,-!p2@XBP1!0.66!152.00!XBP1;;chr7:19157248..19157268,-!p1@TWIST1!0.66!10.94!TWIST1;;chr3:141087339..141087387,+!p2@ZBTB38!0.65!41.26!ZBTB38;;chr6:20402102..20402152,+!p1@E2F3!0.65!16.31!E2F3;;chr8:67525473..67525518,-!p1@MYBL1!0.65!8.83!MYBL1;;chr5:134369879..134369898,-!p2@PITX1!0.65!3.45!PITX1;;chr6:28048343..28048354,+!p1@ZNF165!0.65!3.45!ZNF165;;chr9:100615546..100615558,+!p4@FOXE1!0.65!3.45!FOXE1;;chr17:41622731..41622764,-!p5@ETV4!0.65!3.45!ETV4;;chr17:45928443..45928473,-!p2@SP6!0.65!3.45!SP6;;chr3:141868293..141868355,-!p2@TFDP2!0.64!34.74!TFDP2;;chr19:45909594..45909625,-!p2@PPP1R13L!0.64!18.04!PPP1R13L;;chr3:178789622..178789633,-!p3@ZMAT3!0.64!7.10!ZMAT3;;chr3:141868230..141868250,-!p6@TFDP2!0.64!4.22!TFDP2;;chr17:7590797..7590815,-!p1@TP53!0.63!169.08!TP53;;c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-|sample_tissue=cervix
-|sample_donor(cell lot)=
-|sample_sex=female
-|sample_age=50
-|sample_ethnicity=unknown
-|rna_rin=
-|rna_od260/230=2.13
-|rna_od260/280=2.16
-|sample_cell_type=unclassifiable
-|sample_cell_line=SKG-II-SF
-|sample_collaboration=Yukio Nakamura (RIKEN BRC)
-|sample_experimental_condition=
-|sample_disease=large cell non-keratinizing squamous carcinoma
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
-|rna_weight_ug=43.79272
-|rna_concentration=0.93176
-|sample_note=
-|profile_hcage=CNhs11825,LSID829,release010,COMPLETED
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-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000255,CL:0000548
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000118,UBERON:0000119,UBERON:0000170,UBERON:0000171,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002048,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005153,UBERON:0005178,UBERON:0005181,UBERON:0005423,UBERON:0005597,UBERON:0005911,UBERON:0007026,UBERON:0008947,UBERON:0009142
-|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4,DOID:7
-|sample_description=
 |fonse_cell_line=FF:0100353,FF:0101120
 |fonse_cell_line_closure=FF:0100353,FF:0101120
@@ Line 66: / Line 40: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg19.nobarcode.rdna.fa.gz
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+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg38.nobarcode.ctss.bed.gz
+|id=FF:10692-109F8
+|is_a=EFO:0002091;;FF:0000210;;FF:0102202;;FF:0102205
+|is_obsolete=
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+|library_id_phase_based=2:CNhs11825
+|microRNAs=
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10692
+|name=large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF
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+|rna_box=109
+|rna_catalog_number=
+|rna_concentration=0.93176
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
+|rna_lot_number=
+|rna_od260/230=2.13
+|rna_od260/280=2.16
+|rna_position=F8
+|rna_rin=
+|rna_sample_type=total RNA
+|rna_tube_id=109F8
+|rna_weight_ug=43.79272
+|sample_age=50
+|sample_category=cell lines
+|sample_cell_catalog=RCB0685
+|sample_cell_line=SKG-II-SF
+|sample_cell_lot=
+|sample_cell_type=unclassifiable
+|sample_collaboration=Yukio Nakamura (RIKEN BRC)
+|sample_company=RIKEN Bioresource centre
+|sample_description=
+|sample_dev_stage=
+|sample_disease=large cell non-keratinizing squamous carcinoma
+|sample_donor(cell lot)=
+|sample_ethnicity=unknown
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.0321567436167e-264!GO:0043226;organelle;1.92855967363321e-211!GO:0043229;intracellular organelle;1.09922210651285e-210!GO:0043227;membrane-bound organelle;2.44293935316285e-199!GO:0043231;intracellular membrane-bound organelle;2.44293935316285e-199!GO:0005737;cytoplasm;1.19106943765422e-180!GO:0044422;organelle part;6.46907381096661e-143!GO:0044446;intracellular organelle part;2.26455184545147e-141!GO:0044444;cytoplasmic part;1.48434793489934e-109!GO:0005634;nucleus;1.96027752407504e-98!GO:0032991;macromolecular complex;4.87817285099089e-98!GO:0044238;primary metabolic process;2.81847897928305e-92!GO:0044237;cellular metabolic process;6.132928755584e-92!GO:0043170;macromolecule metabolic process;3.04869412106517e-91!GO:0005515;protein binding;4.58731748287276e-84!GO:0030529;ribonucleoprotein complex;6.598710472623e-80!GO:0044428;nuclear part;1.2975270217112e-76!GO:0003723;RNA binding;2.43226021841566e-69!GO:0043233;organelle lumen;2.57599899243914e-66!GO:0031974;membrane-enclosed lumen;2.57599899243914e-66!GO:0043283;biopolymer metabolic process;4.67985507837276e-57!GO:0016043;cellular component organization and biogenesis;2.45141634128125e-53!GO:0005739;mitochondrion;1.59680325197869e-52!GO:0043228;non-membrane-bound organelle;1.14470962068436e-51!GO:0043232;intracellular non-membrane-bound organelle;1.14470962068436e-51!GO:0043234;protein complex;2.12617680627702e-50!GO:0019538;protein metabolic process;1.02525369692973e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.95296175966241e-49!GO:0006412;translation;8.46068360958149e-49!GO:0005840;ribosome;4.41392451091486e-48!GO:0006396;RNA processing;2.17324042673459e-47!GO:0010467;gene expression;1.08453178215321e-46!GO:0044267;cellular protein metabolic process;1.16027168730026e-44!GO:0031981;nuclear lumen;2.32179260930773e-44!GO:0044260;cellular macromolecule metabolic process;2.50811903078748e-44!GO:0003735;structural constituent of ribosome;1.09507570030934e-42!GO:0006259;DNA metabolic process;7.67393213659336e-41!GO:0031090;organelle membrane;1.62299472772556e-40!GO:0006996;organelle organization and biogenesis;4.62674493156661e-40!GO:0015031;protein transport;3.48606488555321e-39!GO:0033036;macromolecule localization;5.11602647007381e-39!GO:0016071;mRNA metabolic process;1.45321303452271e-38!GO:0007049;cell cycle;2.05966868337429e-38!GO:0033279;ribosomal subunit;4.19818580055404e-37!GO:0046907;intracellular transport;1.68535321206183e-35!GO:0005829;cytosol;2.46093270825637e-35!GO:0008104;protein localization;3.49732690478159e-35!GO:0008380;RNA splicing;5.12669720680005e-35!GO:0009059;macromolecule biosynthetic process;1.80935319599209e-34!GO:0045184;establishment of protein localization;2.10589698368534e-34!GO:0031967;organelle envelope;2.21997651854782e-34!GO:0044249;cellular biosynthetic process;2.51763180920002e-34!GO:0031975;envelope;2.88912098046354e-34!GO:0006397;mRNA processing;5.8665705692188e-34!GO:0009058;biosynthetic process;2.77876882534381e-33!GO:0044429;mitochondrial part;3.3181396790217e-32!GO:0003676;nucleic acid binding;1.2716765068343e-30!GO:0065003;macromolecular complex assembly;5.13053748798464e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.30478452683894e-28!GO:0000166;nucleotide binding;3.9919014793766e-28!GO:0022402;cell cycle process;6.70236566746662e-28!GO:0022607;cellular component assembly;1.7895813298116e-27!GO:0006974;response to DNA damage stimulus;1.90273378232375e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.52244342783425e-27!GO:0005654;nucleoplasm;7.1695784341786e-27!GO:0006886;intracellular protein transport;1.70168481374193e-26!GO:0005681;spliceosome;2.84614383879874e-25!GO:0016070;RNA metabolic process;3.20428408449297e-23!GO:0005694;chromosome;4.48285732007569e-23!GO:0051641;cellular localization;4.89284726951479e-23!GO:0051649;establishment of cellular localization;5.91031971967332e-23!GO:0006281;DNA repair;9.67526773340254e-23!GO:0000278;mitotic cell cycle;1.3589475774117e-21!GO:0044451;nucleoplasm part;1.51814016612498e-21!GO:0016462;pyrophosphatase activity;1.61294709734988e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.71447857727327e-21!GO:0017111;nucleoside-triphosphatase activity;1.83854851115542e-21!GO:0044445;cytosolic part;2.11697615284836e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.81147466612605e-21!GO:0005730;nucleolus;7.63898057706634e-21!GO:0019866;organelle inner membrane;9.76835178831656e-21!GO:0032553;ribonucleotide binding;1.35664134754501e-20!GO:0032555;purine ribonucleotide binding;1.35664134754501e-20!GO:0005740;mitochondrial envelope;1.50134372388778e-20!GO:0044427;chromosomal part;2.33627356194668e-20!GO:0009719;response to endogenous stimulus;2.4929659655275e-20!GO:0008134;transcription factor binding;2.72754470200477e-20!GO:0015934;large ribosomal subunit;4.75059697714781e-20!GO:0017076;purine nucleotide binding;1.43409041761406e-19!GO:0031966;mitochondrial membrane;2.6648525307759e-19!GO:0012505;endomembrane system;4.48100760673642e-19!GO:0006260;DNA replication;8.31158027012934e-19!GO:0005743;mitochondrial inner membrane;1.76739346212902e-18!GO:0006457;protein folding;2.83502444419035e-18!GO:0015935;small ribosomal subunit;3.20229085762473e-18!GO:0022403;cell cycle phase;6.25204888009563e-18!GO:0006119;oxidative phosphorylation;7.82267973226844e-18!GO:0005524;ATP binding;1.70345148476898e-17!GO:0032559;adenyl ribonucleotide binding;5.04018960804483e-17!GO:0022618;protein-RNA complex assembly;5.35189434827681e-17!GO:0016874;ligase activity;6.10047544977041e-17!GO:0044455;mitochondrial membrane part;6.84673902926253e-17!GO:0051726;regulation of cell cycle;2.11899733489308e-16!GO:0000074;regulation of progression through cell cycle;2.77404709130663e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;4.93865910253309e-16!GO:0051276;chromosome organization and biogenesis;7.20907325889877e-16!GO:0006512;ubiquitin cycle;7.52626340754591e-16!GO:0030554;adenyl nucleotide binding;7.52626340754591e-16!GO:0019941;modification-dependent protein catabolic process;8.69296937330754e-16!GO:0043632;modification-dependent macromolecule catabolic process;8.69296937330754e-16!GO:0044257;cellular protein catabolic process;1.33646407259556e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.00344938290416e-15!GO:0006366;transcription from RNA polymerase II promoter;2.03484954477368e-15!GO:0005783;endoplasmic reticulum;3.18674332987097e-15!GO:0051301;cell division;3.23484256540044e-15!GO:0043412;biopolymer modification;3.29044760516795e-15!GO:0000087;M phase of mitotic cell cycle;3.5617435197248e-15!GO:0048770;pigment granule;4.22335846432564e-15!GO:0042470;melanosome;4.22335846432564e-15!GO:0007067;mitosis;6.05995635332231e-15!GO:0005635;nuclear envelope;1.09691589302478e-14!GO:0008135;translation factor activity, nucleic acid binding;1.23806415484207e-14!GO:0043285;biopolymer catabolic process;1.31792234918043e-14!GO:0012501;programmed cell death;2.14329102887092e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.56907830749592e-14!GO:0044265;cellular macromolecule catabolic process;2.9116023533538e-14!GO:0006605;protein targeting;2.95383571556915e-14!GO:0031980;mitochondrial lumen;3.16137564469182e-14!GO:0005759;mitochondrial matrix;3.16137564469182e-14!GO:0051082;unfolded protein binding;3.43426523194922e-14!GO:0005794;Golgi apparatus;4.43555685010054e-14!GO:0006915;apoptosis;5.2192325905e-14!GO:0000279;M phase;5.8646685106784e-14!GO:0050794;regulation of cellular process;7.16602522785244e-14!GO:0005746;mitochondrial respiratory chain;1.1942188480841e-13!GO:0006464;protein modification process;2.51142784462155e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.89872755874637e-13!GO:0044432;endoplasmic reticulum part;2.93448301816516e-13!GO:0031965;nuclear membrane;3.35248409646139e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.45386607932768e-13!GO:0005761;mitochondrial ribosome;4.2831656744009e-13!GO:0000313;organellar ribosome;4.2831656744009e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.3279634524579e-13!GO:0008219;cell death;5.75092492307597e-13!GO:0016265;death;5.75092492307597e-13!GO:0030163;protein catabolic process;6.34434889548819e-13!GO:0043687;post-translational protein modification;6.49527054778025e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;9.71954980215132e-13!GO:0000375;RNA splicing, via transesterification reactions;9.71954980215132e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.71954980215132e-13!GO:0048523;negative regulation of cellular process;1.0718613313969e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.25725800394946e-12!GO:0003954;NADH dehydrogenase activity;1.25725800394946e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.25725800394946e-12!GO:0048193;Golgi vesicle transport;1.65538089612981e-12!GO:0042254;ribosome biogenesis and assembly;2.1319184326194e-12!GO:0006913;nucleocytoplasmic transport;2.37732461739119e-12!GO:0016887;ATPase activity;4.45515966229021e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;4.68048146394647e-12!GO:0003712;transcription cofactor activity;6.49855435709718e-12!GO:0009057;macromolecule catabolic process;6.53130350495901e-12!GO:0051169;nuclear transport;6.77467764066168e-12!GO:0000785;chromatin;1.41686505780812e-11!GO:0006323;DNA packaging;1.60433313221727e-11!GO:0044453;nuclear membrane part;1.77790838212272e-11!GO:0016604;nuclear body;1.86391781390604e-11!GO:0016192;vesicle-mediated transport;2.009116300245e-11!GO:0015630;microtubule cytoskeleton;2.72803210169704e-11!GO:0042623;ATPase activity, coupled;3.54191154906005e-11!GO:0003743;translation initiation factor activity;3.95099852853283e-11!GO:0031324;negative regulation of cellular metabolic process;1.02933501531788e-10!GO:0048519;negative regulation of biological process;1.07295045307891e-10!GO:0004386;helicase activity;1.07591098443083e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.61450891343769e-10!GO:0045271;respiratory chain complex I;1.61450891343769e-10!GO:0005747;mitochondrial respiratory chain complex I;1.61450891343769e-10!GO:0006413;translational initiation;1.65019999807482e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.69249421563342e-10!GO:0042773;ATP synthesis coupled electron transport;1.69249421563342e-10!GO:0044248;cellular catabolic process;2.19228032687732e-10!GO:0043067;regulation of programmed cell death;2.80990537558148e-10!GO:0042981;regulation of apoptosis;3.24804295340262e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.38014854132582e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.54872439592294e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.59367585751701e-10!GO:0006446;regulation of translational initiation;4.61982742534162e-10!GO:0008639;small protein conjugating enzyme activity;4.82175408193561e-10!GO:0006261;DNA-dependent DNA replication;8.47752584956149e-10!GO:0005789;endoplasmic reticulum membrane;8.73604720920407e-10!GO:0004842;ubiquitin-protein ligase activity;1.08155359913834e-09!GO:0009892;negative regulation of metabolic process;1.24181393369252e-09!GO:0051186;cofactor metabolic process;1.4628999112304e-09!GO:0005643;nuclear pore;1.52360974548718e-09!GO:0008026;ATP-dependent helicase activity;2.77122610323107e-09!GO:0016607;nuclear speck;4.01040738702197e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.08087117734969e-09!GO:0006403;RNA localization;4.80918703548889e-09!GO:0050789;regulation of biological process;4.83784143576316e-09!GO:0050657;nucleic acid transport;5.51680711978603e-09!GO:0051236;establishment of RNA localization;5.51680711978603e-09!GO:0050658;RNA transport;5.51680711978603e-09!GO:0006333;chromatin assembly or disassembly;6.2121921211204e-09!GO:0019787;small conjugating protein ligase activity;6.63939909696712e-09!GO:0006461;protein complex assembly;6.84322649536388e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.6864927993571e-09!GO:0005793;ER-Golgi intermediate compartment;8.86004922723892e-09!GO:0043566;structure-specific DNA binding;1.16138978211337e-08!GO:0051246;regulation of protein metabolic process;1.43481514335853e-08!GO:0006793;phosphorus metabolic process;1.86253338305425e-08!GO:0006796;phosphate metabolic process;1.86253338305425e-08!GO:0006399;tRNA metabolic process;1.89865297628761e-08!GO:0065002;intracellular protein transport across a membrane;2.05873391038599e-08!GO:0017038;protein import;2.83573635444825e-08!GO:0006364;rRNA processing;3.2238442308718e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.22950900087447e-08!GO:0016072;rRNA metabolic process;3.35973776667512e-08!GO:0016881;acid-amino acid ligase activity;3.80321777925782e-08!GO:0016564;transcription repressor activity;3.9076206503625e-08!GO:0003697;single-stranded DNA binding;4.20267120167448e-08!GO:0046930;pore complex;4.53824423701356e-08!GO:0005768;endosome;4.72298274995221e-08!GO:0007005;mitochondrion organization and biogenesis;5.1302363889373e-08!GO:0019222;regulation of metabolic process;5.8649347408493e-08!GO:0003924;GTPase activity;6.36119091359059e-08!GO:0009055;electron carrier activity;6.43359093164086e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.49304793638671e-08!GO:0065004;protein-DNA complex assembly;6.70034251110624e-08!GO:0051329;interphase of mitotic cell cycle;7.73333153973135e-08!GO:0043069;negative regulation of programmed cell death;8.24057616451697e-08!GO:0008565;protein transporter activity;1.11390981976172e-07!GO:0006732;coenzyme metabolic process;1.12876514212e-07!GO:0051325;interphase;1.15412244605984e-07!GO:0032446;protein modification by small protein conjugation;1.55573018481045e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.58689820102045e-07!GO:0051028;mRNA transport;1.85628960029605e-07!GO:0000775;chromosome, pericentric region;1.86556679895641e-07!GO:0016567;protein ubiquitination;2.07947065926945e-07!GO:0045786;negative regulation of progression through cell cycle;2.09932450062235e-07!GO:0006916;anti-apoptosis;2.17025096410863e-07!GO:0043066;negative regulation of apoptosis;2.27744793744913e-07!GO:0005819;spindle;2.799894801912e-07!GO:0009259;ribonucleotide metabolic process;3.45364546330804e-07!GO:0016568;chromatin modification;3.4560106378698e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.62286865193862e-07!GO:0016779;nucleotidyltransferase activity;3.66360601348377e-07!GO:0005813;centrosome;3.88428589572781e-07!GO:0005657;replication fork;4.07633202133483e-07!GO:0000075;cell cycle checkpoint;4.32178994365162e-07!GO:0005667;transcription factor complex;5.30523674842943e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.53522408832395e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.53522408832395e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.53522408832395e-07!GO:0007010;cytoskeleton organization and biogenesis;5.82264056427292e-07!GO:0016563;transcription activator activity;6.03086584059804e-07!GO:0016481;negative regulation of transcription;6.16473950883764e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.35174347289259e-07!GO:0016740;transferase activity;6.44657231818168e-07!GO:0005815;microtubule organizing center;6.74877619603309e-07!GO:0015986;ATP synthesis coupled proton transport;6.90958584042312e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.90958584042312e-07!GO:0006163;purine nucleotide metabolic process;7.0026689508556e-07!GO:0016310;phosphorylation;7.40021638360166e-07!GO:0048522;positive regulation of cellular process;7.41926782574865e-07!GO:0003714;transcription corepressor activity;1.07686348661325e-06!GO:0043038;amino acid activation;1.19044323063591e-06!GO:0006418;tRNA aminoacylation for protein translation;1.19044323063591e-06!GO:0043039;tRNA aminoacylation;1.19044323063591e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;1.64465852269817e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.92233654334411e-06!GO:0009150;purine ribonucleotide metabolic process;1.97265570929551e-06!GO:0051170;nuclear import;1.98784701681334e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.09568767845238e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.14031595119401e-06!GO:0006164;purine nucleotide biosynthetic process;2.20724900417202e-06!GO:0003682;chromatin binding;2.22812258114469e-06!GO:0009060;aerobic respiration;2.23237099002944e-06!GO:0009260;ribonucleotide biosynthetic process;2.52667598761383e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.85743240516101e-06!GO:0009141;nucleoside triphosphate metabolic process;2.9479636875637e-06!GO:0019899;enzyme binding;3.18037861394959e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.76669482208817e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.76669482208817e-06!GO:0000245;spliceosome assembly;4.05440274970035e-06!GO:0046034;ATP metabolic process;4.06638725223954e-06!GO:0007051;spindle organization and biogenesis;4.0941502025865e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.30705857871478e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.30705857871478e-06!GO:0016787;hydrolase activity;4.35703415045603e-06!GO:0019829;cation-transporting ATPase activity;4.36159534033312e-06!GO:0048475;coated membrane;4.56115287736567e-06!GO:0030117;membrane coat;4.56115287736567e-06!GO:0030120;vesicle coat;4.74402575465313e-06!GO:0030662;coated vesicle membrane;4.74402575465313e-06!GO:0006606;protein import into nucleus;4.89969899040294e-06!GO:0031497;chromatin assembly;5.08465020996223e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.37538213758641e-06!GO:0009152;purine ribonucleotide biosynthetic process;6.07738623213605e-06!GO:0006754;ATP biosynthetic process;6.35890731579136e-06!GO:0006753;nucleoside phosphate metabolic process;6.35890731579136e-06!GO:0051188;cofactor biosynthetic process;6.49777561629516e-06!GO:0015078;hydrogen ion transmembrane transporter activity;7.27545097574132e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.62032105982756e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.62032105982756e-06!GO:0006334;nucleosome assembly;7.62032105982756e-06!GO:0005525;GTP binding;8.30046650123646e-06!GO:0045259;proton-transporting ATP synthase complex;8.77963068137894e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.1182043448894e-05!GO:0006613;cotranslational protein targeting to membrane;1.16097601719918e-05!GO:0000151;ubiquitin ligase complex;1.16547368747756e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.37654137271515e-05!GO:0051427;hormone receptor binding;1.48145188269425e-05!GO:0003690;double-stranded DNA binding;1.52974683613512e-05!GO:0031323;regulation of cellular metabolic process;1.55005248693285e-05!GO:0009056;catabolic process;1.58203918712419e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.99162257561956e-05!GO:0042802;identical protein binding;2.07881249142743e-05!GO:0045333;cellular respiration;2.67683590987712e-05!GO:0008094;DNA-dependent ATPase activity;2.73007161744686e-05!GO:0009108;coenzyme biosynthetic process;2.99735115142825e-05!GO:0045941;positive regulation of transcription;3.07640485519221e-05!GO:0005762;mitochondrial large ribosomal subunit;3.08753019456117e-05!GO:0000315;organellar large ribosomal subunit;3.08753019456117e-05!GO:0003724;RNA helicase activity;3.21503628985806e-05!GO:0051168;nuclear export;3.2738849523406e-05!GO:0035257;nuclear hormone receptor binding;3.29005627923844e-05!GO:0065007;biological regulation;3.43097505612489e-05!GO:0043623;cellular protein complex assembly;3.5642985682793e-05!GO:0045892;negative regulation of transcription, DNA-dependent;3.9514642575032e-05!GO:0005874;microtubule;3.97399300682732e-05!GO:0044440;endosomal part;4.00969024668621e-05!GO:0010008;endosome membrane;4.00969024668621e-05!GO:0045893;positive regulation of transcription, DNA-dependent;4.18728006934183e-05!GO:0044431;Golgi apparatus part;4.21533580057454e-05!GO:0009117;nucleotide metabolic process;4.63108740058762e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.88825673112753e-05!GO:0003713;transcription coactivator activity;5.55273643521579e-05!GO:0065009;regulation of a molecular function;6.20642768813842e-05!GO:0007264;small GTPase mediated signal transduction;6.23383376661989e-05!GO:0005788;endoplasmic reticulum lumen;7.02772124464288e-05!GO:0005839;proteasome core complex (sensu Eukaryota);7.13026119110686e-05!GO:0051789;response to protein stimulus;7.57328537194097e-05!GO:0006986;response to unfolded protein;7.57328537194097e-05!GO:0007243;protein kinase cascade;7.83359703187849e-05!GO:0005798;Golgi-associated vesicle;8.0217317616832e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.26032232403041e-05!GO:0006302;double-strand break repair;9.25968071380392e-05!GO:0032561;guanyl ribonucleotide binding;9.58924590238653e-05!GO:0019001;guanyl nucleotide binding;9.58924590238653e-05!GO:0003729;mRNA binding;0.000103161551252072!GO:0005769;early endosome;0.000104008842675313!GO:0004674;protein serine/threonine kinase activity;0.000111575767097996!GO:0008361;regulation of cell size;0.000119091664985663!GO:0006099;tricarboxylic acid cycle;0.000125959212492458!GO:0046356;acetyl-CoA catabolic process;0.000125959212492458!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000132604131271086!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000135857151540874!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000139788157421735!GO:0003899;DNA-directed RNA polymerase activity;0.000140316240378196!GO:0048518;positive regulation of biological process;0.000143706049809621!GO:0031252;leading edge;0.000143706049809621!GO:0043021;ribonucleoprotein binding;0.000157875802871428!GO:0048471;perinuclear region of cytoplasm;0.000160705375861258!GO:0006752;group transfer coenzyme metabolic process;0.00016201110949777!GO:0006350;transcription;0.00016656112860344!GO:0003684;damaged DNA binding;0.000182812343243832!GO:0000314;organellar small ribosomal subunit;0.000206884599707407!GO:0005763;mitochondrial small ribosomal subunit;0.000206884599707407!GO:0016049;cell growth;0.000215140562767334!GO:0005770;late endosome;0.000224611867653345!GO:0031988;membrane-bound vesicle;0.000230419546853803!GO:0006839;mitochondrial transport;0.000233137780643478!GO:0000082;G1/S transition of mitotic cell cycle;0.000235429983876785!GO:0051252;regulation of RNA metabolic process;0.000242245480007812!GO:0006950;response to stress;0.000248315452255121!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000253042774693759!GO:0051052;regulation of DNA metabolic process;0.000259503370692591!GO:0004298;threonine endopeptidase activity;0.000267391953099135!GO:0016023;cytoplasmic membrane-bound vesicle;0.000274675662252831!GO:0005856;cytoskeleton;0.000326226139310651!GO:0001558;regulation of cell growth;0.000326226139310651!GO:0007017;microtubule-based process;0.00034560680470709!GO:0006984;ER-nuclear signaling pathway;0.000347981046923387!GO:0006084;acetyl-CoA metabolic process;0.000364851319219291!GO:0042770;DNA damage response, signal transduction;0.000364851319219291!GO:0008632;apoptotic program;0.000368228467847839!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000379793500910895!GO:0008092;cytoskeletal protein binding;0.000387838449113994!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000400543748571161!GO:0016197;endosome transport;0.000400543748571161!GO:0030029;actin filament-based process;0.000422375527151563!GO:0016859;cis-trans isomerase activity;0.000482602666628772!GO:0008250;oligosaccharyl transferase complex;0.000501648197408106!GO:0050790;regulation of catalytic activity;0.000535502893970494!GO:0030867;rough endoplasmic reticulum membrane;0.000537747882407367!GO:0008186;RNA-dependent ATPase activity;0.000564140758217067!GO:0032508;DNA duplex unwinding;0.000615114028806219!GO:0032392;DNA geometric change;0.000615114028806219!GO:0005791;rough endoplasmic reticulum;0.000618773245407976!GO:0009109;coenzyme catabolic process;0.00070467189647956!GO:0000776;kinetochore;0.000711235634392782!GO:0006402;mRNA catabolic process;0.000718465677642301!GO:0007088;regulation of mitosis;0.000745997636225882!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000748860767107885!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000756160355303871!GO:0010468;regulation of gene expression;0.000779989089697823!GO:0000139;Golgi membrane;0.000808352002241171!GO:0005048;signal sequence binding;0.000853470591527323!GO:0006612;protein targeting to membrane;0.000899029989351552!GO:0007050;cell cycle arrest;0.000926532112187426!GO:0006268;DNA unwinding during replication;0.000948716248109298!GO:0008654;phospholipid biosynthetic process;0.000991726523193945!GO:0006284;base-excision repair;0.00100008652113795!GO:0051187;cofactor catabolic process;0.00105646648035665!GO:0048468;cell development;0.00106184541534207!GO:0043065;positive regulation of apoptosis;0.00107784254906741!GO:0031072;heat shock protein binding;0.00107837762856877!GO:0006310;DNA recombination;0.00110235100679364!GO:0004576;oligosaccharyl transferase activity;0.00114420660562301!GO:0003702;RNA polymerase II transcription factor activity;0.00115057917096538!GO:0033116;ER-Golgi intermediate compartment membrane;0.0011742829274848!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00119105773066835!GO:0008287;protein serine/threonine phosphatase complex;0.00120007075942359!GO:0007059;chromosome segregation;0.00122170198025379!GO:0016853;isomerase activity;0.00128478903097842!GO:0043681;protein import into mitochondrion;0.00137889256064481!GO:0031982;vesicle;0.00138940958861549!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00146502692860461!GO:0045792;negative regulation of cell size;0.00146507884262214!GO:0007052;mitotic spindle organization and biogenesis;0.0014719224220418!GO:0043068;positive regulation of programmed cell death;0.00148628021683765!GO:0045454;cell redox homeostasis;0.00149907917973111!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00152424788821716!GO:0004004;ATP-dependent RNA helicase activity;0.00157158840425132!GO:0030031;cell projection biogenesis;0.00157264531370579!GO:0048500;signal recognition particle;0.00158126482965665!GO:0043596;nuclear replication fork;0.00160109213824817!GO:0030308;negative regulation of cell growth;0.00163446845080516!GO:0016272;prefoldin complex;0.00164276102091139!GO:0030176;integral to endoplasmic reticulum membrane;0.00165703868287393!GO:0018196;peptidyl-asparagine modification;0.00175104289024268!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00175104289024268!GO:0001889;liver development;0.00179794993550605!GO:0005637;nuclear inner membrane;0.00196988577933365!GO:0051920;peroxiredoxin activity;0.00207428249600723!GO:0046983;protein dimerization activity;0.00209241180360043!GO:0007093;mitotic cell cycle checkpoint;0.00214769791728802!GO:0031410;cytoplasmic vesicle;0.0021497739467796!GO:0032774;RNA biosynthetic process;0.00215132708519499!GO:0005905;coated pit;0.00218944013966693!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00223341853146649!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00224137381749978!GO:0008601;protein phosphatase type 2A regulator activity;0.00234693894240286!GO:0006383;transcription from RNA polymerase III promoter;0.00240796932221053!GO:0051338;regulation of transferase activity;0.00244830615429893!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00244830615429893!GO:0019843;rRNA binding;0.00249152779482437!GO:0003678;DNA helicase activity;0.00250359769134386!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00250359769134386!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00250359769134386!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00250359769134386!GO:0030132;clathrin coat of coated pit;0.00250459830841336!GO:0006351;transcription, DNA-dependent;0.00268911363125015!GO:0008312;7S RNA binding;0.00271204630197933!GO:0045926;negative regulation of growth;0.00284177723669862!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00286111418918642!GO:0005885;Arp2/3 protein complex;0.00296022367082157!GO:0040008;regulation of growth;0.00305631841973725!GO:0006891;intra-Golgi vesicle-mediated transport;0.0030623506654923!GO:0005684;U2-dependent spliceosome;0.00306502183277879!GO:0016363;nuclear matrix;0.00306502183277879!GO:0016044;membrane organization and biogenesis;0.00307248185291733!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00313303821958705!GO:0000786;nucleosome;0.00313555921831341!GO:0006401;RNA catabolic process;0.00327750861562431!GO:0008033;tRNA processing;0.00331151576806677!GO:0004527;exonuclease activity;0.00338681042697684!GO:0016301;kinase activity;0.0033960679530227!GO:0000049;tRNA binding;0.00363778246665702!GO:0006338;chromatin remodeling;0.00382469639906903!GO:0003746;translation elongation factor activity;0.00385357744601346!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00388377705460189!GO:0006275;regulation of DNA replication;0.00394411316004648!GO:0015631;tubulin binding;0.00394554115138067!GO:0031901;early endosome membrane;0.00399295607125807!GO:0043488;regulation of mRNA stability;0.00401242519885985!GO:0043487;regulation of RNA stability;0.00401242519885985!GO:0031570;DNA integrity checkpoint;0.00401541333406994!GO:0009116;nucleoside metabolic process;0.00405893505295884!GO:0005773;vacuole;0.00406040209472712!GO:0000159;protein phosphatase type 2A complex;0.00415410032266994!GO:0007346;regulation of progression through mitotic cell cycle;0.00421861201402778!GO:0030433;ER-associated protein catabolic process;0.00430789058177316!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00430789058177316!GO:0045936;negative regulation of phosphate metabolic process;0.004341972374304!GO:0006611;protein export from nucleus;0.00437117566951581!GO:0048487;beta-tubulin binding;0.00441918936058087!GO:0043549;regulation of kinase activity;0.00452020129622703!GO:0006417;regulation of translation;0.00453079970865866!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00460958863115327!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00460958863115327!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00461510263674154!GO:0045047;protein targeting to ER;0.00461510263674154!GO:0009112;nucleobase metabolic process;0.004616741473384!GO:0043601;nuclear replisome;0.00480674973346146!GO:0030894;replisome;0.00480674973346146!GO:0006626;protein targeting to mitochondrion;0.00480674973346146!GO:0006352;transcription initiation;0.00481006980081388!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00483933844368231!GO:0006414;translational elongation;0.00484510617761356!GO:0006270;DNA replication initiation;0.00493960583726322!GO:0008637;apoptotic mitochondrial changes;0.00493960583726322!GO:0000792;heterochromatin;0.00511284134075718!GO:0001726;ruffle;0.0051730260494312!GO:0051287;NAD binding;0.00525827177730065!GO:0030663;COPI coated vesicle membrane;0.00540213960855104!GO:0030126;COPI vesicle coat;0.00540213960855104!GO:0030137;COPI-coated vesicle;0.00543109980265611!GO:0006405;RNA export from nucleus;0.00560961384724516!GO:0016311;dephosphorylation;0.00572098948755149!GO:0051087;chaperone binding;0.00574587984461109!GO:0007242;intracellular signaling cascade;0.00597869844841656!GO:0051053;negative regulation of DNA metabolic process;0.00611538831227048!GO:0008629;induction of apoptosis by intracellular signals;0.0061529659037775!GO:0033673;negative regulation of kinase activity;0.00625578667483321!GO:0006469;negative regulation of protein kinase activity;0.00625578667483321!GO:0032200;telomere organization and biogenesis;0.0063684520632705!GO:0000723;telomere maintenance;0.0063684520632705!GO:0000323;lytic vacuole;0.00639817303003156!GO:0005764;lysosome;0.00639817303003156!GO:0008139;nuclear localization sequence binding;0.00645474045998759!GO:0035258;steroid hormone receptor binding;0.00652970269253928!GO:0000228;nuclear chromosome;0.00675171360434533!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0069302693803455!GO:0030118;clathrin coat;0.00699243503006293!GO:0046966;thyroid hormone receptor binding;0.006997508560625!GO:0007265;Ras protein signal transduction;0.00702678042937547!GO:0006289;nucleotide-excision repair;0.00709560295441984!GO:0009893;positive regulation of metabolic process;0.00717261018709268!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00718483803356193!GO:0042326;negative regulation of phosphorylation;0.00718483803356193!GO:0050178;phenylpyruvate tautomerase activity;0.00723948986199877!GO:0007006;mitochondrial membrane organization and biogenesis;0.00738275052001287!GO:0003711;transcription elongation regulator activity;0.00751792549399901!GO:0004518;nuclease activity;0.00813826054493115!GO:0043022;ribosome binding;0.00833760304969458!GO:0030968;unfolded protein response;0.00833760304969458!GO:0000725;recombinational repair;0.00852149793386848!GO:0000724;double-strand break repair via homologous recombination;0.00852149793386848!GO:0043624;cellular protein complex disassembly;0.00875107442829981!GO:0009967;positive regulation of signal transduction;0.00880001376220422!GO:0046474;glycerophospholipid biosynthetic process;0.00885155290668526!GO:0004860;protein kinase inhibitor activity;0.00889694552602985!GO:0017166;vinculin binding;0.00907712868540518!GO:0044452;nucleolar part;0.00917195151117214!GO:0005876;spindle microtubule;0.00929255876032698!GO:0030521;androgen receptor signaling pathway;0.00942389547903858!GO:0051348;negative regulation of transferase activity;0.00948085692846043!GO:0016791;phosphoric monoester hydrolase activity;0.00956279449900676!GO:0004722;protein serine/threonine phosphatase activity;0.00961720203311357!GO:0006376;mRNA splice site selection;0.00965641635683406!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00965641635683406!GO:0008022;protein C-terminus binding;0.00977670039486692!GO:0042393;histone binding;0.00982438162397549!GO:0045859;regulation of protein kinase activity;0.0100356032993356!GO:0008234;cysteine-type peptidase activity;0.0103949883636449!GO:0030133;transport vesicle;0.0105561516137871!GO:0046489;phosphoinositide biosynthetic process;0.0106579150295631!GO:0009889;regulation of biosynthetic process;0.0110178499131454!GO:0015980;energy derivation by oxidation of organic compounds;0.0111812981687051!GO:0006695;cholesterol biosynthetic process;0.0113150791206706!GO:0051128;regulation of cellular component organization and biogenesis;0.0115727196620264!GO:0015992;proton transport;0.0118742435271073!GO:0009165;nucleotide biosynthetic process;0.0119935843808529!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0122575226705003!GO:0030880;RNA polymerase complex;0.0123948291413022!GO:0006672;ceramide metabolic process;0.0124047618787445!GO:0016126;sterol biosynthetic process;0.0125837546299131!GO:0006818;hydrogen transport;0.0127102160774199!GO:0030658;transport vesicle membrane;0.0127102160774199!GO:0030032;lamellipodium biogenesis;0.0128705026947164!GO:0001836;release of cytochrome c from mitochondria;0.0128705026947164!GO:0045449;regulation of transcription;0.0131120729277604!GO:0040029;regulation of gene expression, epigenetic;0.0134160560865542!GO:0031326;regulation of cellular biosynthetic process;0.0134560247726247!GO:0045045;secretory pathway;0.0134565480033457!GO:0006979;response to oxidative stress;0.0138127862186738!GO:0031124;mRNA 3'-end processing;0.013992339373517!GO:0043414;biopolymer methylation;0.0142744353729383!GO:0006354;RNA elongation;0.0143600720199826!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.014681458446005!GO:0015399;primary active transmembrane transporter activity;0.014681458446005!GO:0032984;macromolecular complex disassembly;0.0147248111223207!GO:0030027;lamellipodium;0.0149436272042969!GO:0005832;chaperonin-containing T-complex;0.0153854473637903!GO:0000922;spindle pole;0.0155893040506335!GO:0008156;negative regulation of DNA replication;0.0157609919626316!GO:0043241;protein complex disassembly;0.0158284820704741!GO:0000059;protein import into nucleus, docking;0.0159404467520697!GO:0016491;oxidoreductase activity;0.0166397278090723!GO:0006497;protein amino acid lipidation;0.0166397278090723!GO:0001952;regulation of cell-matrix adhesion;0.01707920496609!GO:0000086;G2/M transition of mitotic cell cycle;0.0170926471190207!GO:0046519;sphingoid metabolic process;0.0173314082596889!GO:0016251;general RNA polymerase II transcription factor activity;0.0180502585310069!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0180825583901148!GO:0046426;negative regulation of JAK-STAT cascade;0.0182659879963998!GO:0044454;nuclear chromosome part;0.0185747617680707!GO:0003677;DNA binding;0.0188554870551552!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0188815129168887!GO:0015002;heme-copper terminal oxidase activity;0.0188815129168887!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0188815129168887!GO:0004129;cytochrome-c oxidase activity;0.0188815129168887!GO:0051101;regulation of DNA binding;0.0189782615816815!GO:0000077;DNA damage checkpoint;0.0190588351126662!GO:0006595;polyamine metabolic process;0.0193170446464288!GO:0004721;phosphoprotein phosphatase activity;0.0193724967030389!GO:0050681;androgen receptor binding;0.0193724967030389!GO:0006892;post-Golgi vesicle-mediated transport;0.0193817821058507!GO:0030119;AP-type membrane coat adaptor complex;0.0196127208061555!GO:0008408;3'-5' exonuclease activity;0.0196127208061555!GO:0022890;inorganic cation transmembrane transporter activity;0.0197135990917602!GO:0043281;regulation of caspase activity;0.0197612941930089!GO:0005669;transcription factor TFIID complex;0.0201545308349607!GO:0030660;Golgi-associated vesicle membrane;0.020595834642489!GO:0005862;muscle thin filament tropomyosin;0.0206919017493364!GO:0008283;cell proliferation;0.0213398962176828!GO:0030659;cytoplasmic vesicle membrane;0.0213681824048542!GO:0031325;positive regulation of cellular metabolic process;0.0214660261028478!GO:0006650;glycerophospholipid metabolic process;0.0222294170939629!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0231013338961638!GO:0000428;DNA-directed RNA polymerase complex;0.0231013338961638!GO:0005663;DNA replication factor C complex;0.0231899217965095!GO:0006091;generation of precursor metabolites and energy;0.0232108835662984!GO:0051059;NF-kappaB binding;0.0234180160952383!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0237543177306676!GO:0046822;regulation of nucleocytoplasmic transport;0.0237912574556977!GO:0005875;microtubule associated complex;0.0239687587025049!GO:0051716;cellular response to stimulus;0.0240319584409786!GO:0030384;phosphoinositide metabolic process;0.0240404438983482!GO:0006917;induction of apoptosis;0.0243582332114541!GO:0042158;lipoprotein biosynthetic process;0.0244446433700823!GO:0009119;ribonucleoside metabolic process;0.0247480376013039!GO:0031529;ruffle organization and biogenesis;0.0257143753545473!GO:0030833;regulation of actin filament polymerization;0.025738925207939!GO:0008630;DNA damage response, signal transduction resulting in induction of apoptosis;0.0261048008453659!GO:0050750;low-density lipoprotein receptor binding;0.026469908861683!GO:0006213;pyrimidine nucleoside metabolic process;0.0267451146515158!GO:0006144;purine base metabolic process;0.0268011447128912!GO:0032507;maintenance of cellular protein localization;0.0268548866622678!GO:0006607;NLS-bearing substrate import into nucleus;0.0269763269346438!GO:0007004;telomere maintenance via telomerase;0.0275065118469754!GO:0016741;transferase activity, transferring one-carbon groups;0.0275212681162076!GO:0022408;negative regulation of cell-cell adhesion;0.027660895235253!GO:0000781;chromosome, telomeric region;0.0279484542343606!GO:0030134;ER to Golgi transport vesicle;0.0280201136145235!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.028679875264506!GO:0047485;protein N-terminus binding;0.0289001486396597!GO:0008097;5S rRNA binding;0.0289001486396597!GO:0032259;methylation;0.0302014854366914!GO:0030131;clathrin adaptor complex;0.0306670544712483!GO:0008168;methyltransferase activity;0.0309012380182515!GO:0012502;induction of programmed cell death;0.0309042439523105!GO:0000910;cytokinesis;0.0310538085495945!GO:0046982;protein heterodimerization activity;0.0315364440367091!GO:0019900;kinase binding;0.0320749423336873!GO:0043284;biopolymer biosynthetic process;0.0325549380507785!GO:0030125;clathrin vesicle coat;0.0326101588755094!GO:0030665;clathrin coated vesicle membrane;0.0326101588755094!GO:0044433;cytoplasmic vesicle part;0.0329116235207058!GO:0000790;nuclear chromatin;0.0336126575682458!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0337017414523986!GO:0012506;vesicle membrane;0.0343430142063424!GO:0050662;coenzyme binding;0.0349613763593387!GO:0046483;heterocycle metabolic process;0.035076821077313!GO:0033239;negative regulation of amine metabolic process;0.0352079856608838!GO:0045763;negative regulation of amino acid metabolic process;0.0352079856608838!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0352079856608838!GO:0019783;small conjugating protein-specific protease activity;0.0359933704355481!GO:0022415;viral reproductive process;0.0360917167003546!GO:0006355;regulation of transcription, DNA-dependent;0.0360954913699331!GO:0019210;kinase inhibitor activity;0.0360954913699331!GO:0031625;ubiquitin protein ligase binding;0.0362216619930346!GO:0006509;membrane protein ectodomain proteolysis;0.0363797532171517!GO:0033619;membrane protein proteolysis;0.0363797532171517!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0370288570220465!GO:0007030;Golgi organization and biogenesis;0.037041160738576!GO:0022411;cellular component disassembly;0.0370629719756635!GO:0001953;negative regulation of cell-matrix adhesion;0.0377979335231662!GO:0031902;late endosome membrane;0.0379635245512608!GO:0005784;translocon complex;0.0381309844263635!GO:0006470;protein amino acid dephosphorylation;0.0391439771394265!GO:0008538;proteasome activator activity;0.0391439771394265!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0392229563459824!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0392229563459824!GO:0008047;enzyme activator activity;0.0393056425562272!GO:0008426;protein kinase C inhibitor activity;0.0397158907992383!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0397158907992383!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0397158907992383!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0397815264567717!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0397815264567717!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0397815264567717!GO:0030041;actin filament polymerization;0.040360213963943!GO:0008017;microtubule binding;0.0407737298752035!GO:0031123;RNA 3'-end processing;0.0409007562411797!GO:0050839;cell adhesion molecule binding;0.0409848233227786!GO:0019901;protein kinase binding;0.0416645532585222!GO:0030518;steroid hormone receptor signaling pathway;0.04190873676483!GO:0031575;G1/S transition checkpoint;0.0420743880731924!GO:0051098;regulation of binding;0.0424123674625311!GO:0043154;negative regulation of caspase activity;0.0428882289081059!GO:0019207;kinase regulator activity;0.043002772637476!GO:0030127;COPII vesicle coat;0.0431462021842319!GO:0012507;ER to Golgi transport vesicle membrane;0.0431462021842319!GO:0006278;RNA-dependent DNA replication;0.0437748619897812!GO:0016584;nucleosome positioning;0.0441759117206537!GO:0043086;negative regulation of catalytic activity;0.0442048064748666!GO:0005869;dynactin complex;0.0444135787915473!GO:0000118;histone deacetylase complex;0.0454727673849439!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0455348133075003!GO:0010257;NADH dehydrogenase complex assembly;0.0455348133075003!GO:0033108;mitochondrial respiratory chain complex assembly;0.0455348133075003!GO:0005083;small GTPase regulator activity;0.0463385303739033!GO:0004003;ATP-dependent DNA helicase activity;0.0463809318099281!GO:0051336;regulation of hydrolase activity;0.0487582349127859!GO:0035035;histone acetyltransferase binding;0.0488881633720441!GO:0019887;protein kinase regulator activity;0.0492490930572299!GO:0000096;sulfur amino acid metabolic process;0.0493646528511782!GO:0051651;maintenance of cellular localization;0.0496229814390005
+|sample_id=10692
+|sample_note=
+|sample_sex=female
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=cervix
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10692-109F8;search_select_hide=table117:FF:10692-109F8
 }}

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FF:10692-109F8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:33, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0