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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004735
|DRA_sample_Accession=CAGE@SAMD00004735
|accession_numbers=CAGE;DRX008640;DRR009512;DRZ000937;DRZ002322
|accession_numbers=CAGE;DRX008640;DRR009512;DRZ000937;DRZ002322;DRZ012287;DRZ013672
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|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg38.nobarcode.ctss.bed.gz
|id=FF:10042-101F6
|id=FF:10042-101F6
|is_a=EFO:0002091;;FF:0010042
|is_a=EFO:0002091;;FF:0010042
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|library_id=CNhs10649
|library_id=CNhs10649
|library_id_phase_based=2:CNhs10649
|library_id_phase_based=2:CNhs10649
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10042
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10042
|name=corpus callosum, adult, pool1
|name=corpus callosum, adult, pool1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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Line 92: Line 101:
|top_motifs=SOX2:4.42941571667;SOX5:4.34228394107;SOX{8,9,10}:3.58666692924;NFIX:3.380899961;NKX3-2:3.08778119262;RREB1:2.9976571244;ZFP161:2.84812791704;NHLH1,2:2.77911881394;RFX1:2.71125387275;HIC1:2.61396092151;RFX2..5_RFXANK_RFXAP:2.60474477281;MED-1{core}:2.59696033893;REST:2.5908109832;SOX17:2.57126774944;MYFfamily:2.3901985566;EP300:2.29832704973;ATF2:2.29574215437;TFAP2B:2.23622305731;ZBTB6:2.18569588909;MTE{core}:2.17377966716;PATZ1:2.13659958769;SMAD1..7,9:2.10092121081;GTF2I:2.07697180999;PRRX1,2:2.04916003567;ZNF423:2.02612962688;PAX5:1.99353294489;HBP1_HMGB_SSRP1_UBTF:1.99326625556;EBF1:1.95315923027;MTF1:1.95251908088;LMO2:1.94107517388;XBP1:1.92444672083;NANOG:1.91750033245;JUN:1.85558702101;TGIF1:1.84563892653;MZF1:1.84443647132;SP1:1.82084062563;CUX2:1.80093794386;LEF1_TCF7_TCF7L1,2:1.79925064536;MAZ:1.79422936337;RBPJ:1.78889719904;MAFB:1.75495532646;TFAP2{A,C}:1.73393770609;EGR1..3:1.71286911994;GATA4:1.65240357049;GTF2A1,2:1.62662855994;FOXO1,3,4:1.59661618896;TLX1..3_NFIC{dimer}:1.58497461103;FOX{D1,D2}:1.58088620037;GCM1,2:1.55313156013;SREBF1,2:1.54914730536;MYBL2:1.51211772635;PRDM1:1.48701723993;HOX{A6,A7,B6,B7}:1.46680785069;AR:1.41040755065;BREu{core}:1.37481807595;FOX{F1,F2,J1}:1.35169295642;OCT4_SOX2{dimer}:1.29731255255;POU5F1:1.27008772915;PAX6:1.26642765993;VSX1,2:1.26375013839;BPTF:1.26115944495;POU6F1:1.25514381927;NR3C1:1.24907832259;FOXP3:1.22766583143;DBP:1.14261314262;ESRRA:1.12686476852;NRF1:1.11177564816;SPZ1:1.05452633273;ZNF143:0.966747197038;TLX2:0.959967916608;ZIC1..3:0.913263022829;KLF4:0.802705393618;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.732043557977;TFDP1:0.693242030913;TFCP2:0.643837072242;GFI1B:0.638899639834;XCPE1{core}:0.628798427888;ZNF238:0.615338212384;FOXP1:0.600486293836;FOXQ1:0.589322185978;NKX2-3_NKX2-5:0.587654326937;RORA:0.582308857235;FOXA2:0.581599767346;ARID5B:0.575234483725;CREB1:0.559856356629;FOXM1:0.553210689624;MEF2{A,B,C,D}:0.551905097393;NFY{A,B,C}:0.545487991924;IRF7:0.511035606625;HMX1:0.499562321853;GFI1:0.480135192745;STAT1,3:0.455955131883;PDX1:0.441488511589;HOX{A4,D4}:0.438461172209;YY1:0.421045134796;FOX{I1,J2}:0.315495170065;TOPORS:0.309600768676;AHR_ARNT_ARNT2:0.299110525176;GZF1:0.263689604769;ZNF384:0.236000284674;MYOD1:0.220816250879;STAT2,4,6:0.200292184015;PAX2:0.183760974035;CRX:0.172208291371;PBX1:0.148853642585;TFAP4:0.0740166264303;NR5A1,2:0.0490128452947;NFIL3:0.0444299813167;IRF1,2:0.0385116403359;HAND1,2:0.027635980454;NFATC1..3:-0.088371140144;CDC5L:-0.107937565902;ATF5_CREB3:-0.112114850032;bHLH_family:-0.155596438477;ZEB1:-0.164386838603;HOXA9_MEIS1:-0.184946519386;ATF4:-0.19384400605;FOXN1:-0.197545915147;TBX4,5:-0.200085223461;GATA6:-0.212364434994;NKX6-1,2:-0.218712753006;HNF4A_NR2F1,2:-0.262610844662;FOXD3:-0.270376195344;LHX3,4:-0.281844681123;ONECUT1,2:-0.289142330901;TBP:-0.28937700866;ETS1,2:-0.292957352533;SPI1:-0.312523714616;RXR{A,B,G}:-0.329630814141;ESR1:-0.363455065655;ZNF148:-0.382795637341;TP53:-0.398259774375;HSF1,2:-0.400528523867;IKZF2:-0.449087467851;NFE2L2:-0.455206692639;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.470250353871;NANOG{mouse}:-0.474869710194;HNF1A:-0.517571648068;SPIB:-0.518257584807;TEAD1:-0.525542771239;NFE2:-0.526309819809;NFE2L1:-0.540887130835;SNAI1..3:-0.559447229192;T:-0.561620444694;SRF:-0.58068200461;ELK1,4_GABP{A,B1}:-0.589082240437;PITX1..3:-0.58925916868;POU3F1..4:-0.619658079005;IKZF1:-0.664261238047;ALX4:-0.671686585628;HES1:-0.686097519028;CEBPA,B_DDIT3:-0.718062015574;HLF:-0.745746039427;ADNP_IRX_SIX_ZHX:-0.773292032412;DMAP1_NCOR{1,2}_SMARC:-0.792557726289;ATF6:-0.794138882861;FOSL2:-0.83364770611;TAL1_TCF{3,4,12}:-0.840876271006;RUNX1..3:-0.855575891214;ELF1,2,4:-0.88810780209;FOS_FOS{B,L1}_JUN{B,D}:-0.940936416522;NFKB1_REL_RELA:-0.941594792594;HMGA1,2:-0.944394043431;BACH2:-0.950105446757;MYB:-1.03909667367;UFEwm:-1.06679225772;E2F1..5:-1.06966870926;PAX3,7:-1.07625740001;PAX8:-1.09986791816;POU2F1..3:-1.16999306204;NR1H4:-1.18884041864;GLI1..3:-1.29407035394;EN1,2:-1.31276826261;NKX2-1,4:-1.34976877009;ALX1:-1.40159100442;HIF1A:-1.40497143323;RXRA_VDR{dimer}:-1.4156485579;PAX1,9:-1.46131752209;PAX4:-1.48069881963;POU1F1:-1.50792867021;NKX2-2,8:-1.58945763742;EVI1:-1.64739244067;ZBTB16:-1.73471270962;NKX3-1:-1.76773982337;FOXL1:-1.7773828639;STAT5{A,B}:-1.83245149578;NR6A1:-1.95520687578;CDX1,2,4:-1.99470016939;AIRE:-2.04998345682;TEF:-2.08861159154;HOX{A5,B5}:-2.45956922274;PPARG:-2.5883002386
|top_motifs=SOX2:4.42941571667;SOX5:4.34228394107;SOX{8,9,10}:3.58666692924;NFIX:3.380899961;NKX3-2:3.08778119262;RREB1:2.9976571244;ZFP161:2.84812791704;NHLH1,2:2.77911881394;RFX1:2.71125387275;HIC1:2.61396092151;RFX2..5_RFXANK_RFXAP:2.60474477281;MED-1{core}:2.59696033893;REST:2.5908109832;SOX17:2.57126774944;MYFfamily:2.3901985566;EP300:2.29832704973;ATF2:2.29574215437;TFAP2B:2.23622305731;ZBTB6:2.18569588909;MTE{core}:2.17377966716;PATZ1:2.13659958769;SMAD1..7,9:2.10092121081;GTF2I:2.07697180999;PRRX1,2:2.04916003567;ZNF423:2.02612962688;PAX5:1.99353294489;HBP1_HMGB_SSRP1_UBTF:1.99326625556;EBF1:1.95315923027;MTF1:1.95251908088;LMO2:1.94107517388;XBP1:1.92444672083;NANOG:1.91750033245;JUN:1.85558702101;TGIF1:1.84563892653;MZF1:1.84443647132;SP1:1.82084062563;CUX2:1.80093794386;LEF1_TCF7_TCF7L1,2:1.79925064536;MAZ:1.79422936337;RBPJ:1.78889719904;MAFB:1.75495532646;TFAP2{A,C}:1.73393770609;EGR1..3:1.71286911994;GATA4:1.65240357049;GTF2A1,2:1.62662855994;FOXO1,3,4:1.59661618896;TLX1..3_NFIC{dimer}:1.58497461103;FOX{D1,D2}:1.58088620037;GCM1,2:1.55313156013;SREBF1,2:1.54914730536;MYBL2:1.51211772635;PRDM1:1.48701723993;HOX{A6,A7,B6,B7}:1.46680785069;AR:1.41040755065;BREu{core}:1.37481807595;FOX{F1,F2,J1}:1.35169295642;OCT4_SOX2{dimer}:1.29731255255;POU5F1:1.27008772915;PAX6:1.26642765993;VSX1,2:1.26375013839;BPTF:1.26115944495;POU6F1:1.25514381927;NR3C1:1.24907832259;FOXP3:1.22766583143;DBP:1.14261314262;ESRRA:1.12686476852;NRF1:1.11177564816;SPZ1:1.05452633273;ZNF143:0.966747197038;TLX2:0.959967916608;ZIC1..3:0.913263022829;KLF4:0.802705393618;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.732043557977;TFDP1:0.693242030913;TFCP2:0.643837072242;GFI1B:0.638899639834;XCPE1{core}:0.628798427888;ZNF238:0.615338212384;FOXP1:0.600486293836;FOXQ1:0.589322185978;NKX2-3_NKX2-5:0.587654326937;RORA:0.582308857235;FOXA2:0.581599767346;ARID5B:0.575234483725;CREB1:0.559856356629;FOXM1:0.553210689624;MEF2{A,B,C,D}:0.551905097393;NFY{A,B,C}:0.545487991924;IRF7:0.511035606625;HMX1:0.499562321853;GFI1:0.480135192745;STAT1,3:0.455955131883;PDX1:0.441488511589;HOX{A4,D4}:0.438461172209;YY1:0.421045134796;FOX{I1,J2}:0.315495170065;TOPORS:0.309600768676;AHR_ARNT_ARNT2:0.299110525176;GZF1:0.263689604769;ZNF384:0.236000284674;MYOD1:0.220816250879;STAT2,4,6:0.200292184015;PAX2:0.183760974035;CRX:0.172208291371;PBX1:0.148853642585;TFAP4:0.0740166264303;NR5A1,2:0.0490128452947;NFIL3:0.0444299813167;IRF1,2:0.0385116403359;HAND1,2:0.027635980454;NFATC1..3:-0.088371140144;CDC5L:-0.107937565902;ATF5_CREB3:-0.112114850032;bHLH_family:-0.155596438477;ZEB1:-0.164386838603;HOXA9_MEIS1:-0.184946519386;ATF4:-0.19384400605;FOXN1:-0.197545915147;TBX4,5:-0.200085223461;GATA6:-0.212364434994;NKX6-1,2:-0.218712753006;HNF4A_NR2F1,2:-0.262610844662;FOXD3:-0.270376195344;LHX3,4:-0.281844681123;ONECUT1,2:-0.289142330901;TBP:-0.28937700866;ETS1,2:-0.292957352533;SPI1:-0.312523714616;RXR{A,B,G}:-0.329630814141;ESR1:-0.363455065655;ZNF148:-0.382795637341;TP53:-0.398259774375;HSF1,2:-0.400528523867;IKZF2:-0.449087467851;NFE2L2:-0.455206692639;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.470250353871;NANOG{mouse}:-0.474869710194;HNF1A:-0.517571648068;SPIB:-0.518257584807;TEAD1:-0.525542771239;NFE2:-0.526309819809;NFE2L1:-0.540887130835;SNAI1..3:-0.559447229192;T:-0.561620444694;SRF:-0.58068200461;ELK1,4_GABP{A,B1}:-0.589082240437;PITX1..3:-0.58925916868;POU3F1..4:-0.619658079005;IKZF1:-0.664261238047;ALX4:-0.671686585628;HES1:-0.686097519028;CEBPA,B_DDIT3:-0.718062015574;HLF:-0.745746039427;ADNP_IRX_SIX_ZHX:-0.773292032412;DMAP1_NCOR{1,2}_SMARC:-0.792557726289;ATF6:-0.794138882861;FOSL2:-0.83364770611;TAL1_TCF{3,4,12}:-0.840876271006;RUNX1..3:-0.855575891214;ELF1,2,4:-0.88810780209;FOS_FOS{B,L1}_JUN{B,D}:-0.940936416522;NFKB1_REL_RELA:-0.941594792594;HMGA1,2:-0.944394043431;BACH2:-0.950105446757;MYB:-1.03909667367;UFEwm:-1.06679225772;E2F1..5:-1.06966870926;PAX3,7:-1.07625740001;PAX8:-1.09986791816;POU2F1..3:-1.16999306204;NR1H4:-1.18884041864;GLI1..3:-1.29407035394;EN1,2:-1.31276826261;NKX2-1,4:-1.34976877009;ALX1:-1.40159100442;HIF1A:-1.40497143323;RXRA_VDR{dimer}:-1.4156485579;PAX1,9:-1.46131752209;PAX4:-1.48069881963;POU1F1:-1.50792867021;NKX2-2,8:-1.58945763742;EVI1:-1.64739244067;ZBTB16:-1.73471270962;NKX3-1:-1.76773982337;FOXL1:-1.7773828639;STAT5{A,B}:-1.83245149578;NR6A1:-1.95520687578;CDX1,2,4:-1.99470016939;AIRE:-2.04998345682;TEF:-2.08861159154;HOX{A5,B5}:-2.45956922274;PPARG:-2.5883002386
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10042-101F6;search_select_hide=table117:FF:10042-101F6
}}
}}

Latest revision as of 12:16, 3 June 2020

Name:corpus callosum, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10649
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecorpus callosum
dev stage24-68 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number6080307
catalog numberCat:636567
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004735
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10649 CAGE DRX008640 DRR009512
Accession ID Hg19

Library idBAMCTSS
CNhs10649 DRZ000937 DRZ002322
Accession ID Hg38

Library idBAMCTSS
CNhs10649 DRZ012287 DRZ013672
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.104
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0801
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.364
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0283
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.587
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.168
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0283
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.132
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0283
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0283
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0283
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.0283
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0.429
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.383
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0549
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0486
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.212
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.131
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.126
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0283
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.096
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0549
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.104
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.122
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0.0283
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.84
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0283
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.224
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.147
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0283
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.08
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0283
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.224
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0283
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.0549
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0721
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0283
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.1
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.318
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0549
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.0283
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.0674
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.489
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.206
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.757
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.08
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.318
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.318
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0549
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.256
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.0283
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.0283
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.782
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.104
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.104
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0549
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10649

Jaspar motifP-value
MA0002.20.0413
MA0003.10.413
MA0004.10.316
MA0006.10.682
MA0007.10.4
MA0009.10.172
MA0014.10.722
MA0017.10.0185
MA0018.20.0439
MA0019.10.481
MA0024.10.705
MA0025.10.748
MA0027.10.378
MA0028.10.107
MA0029.10.25
MA0030.10.00107
MA0031.10.122
MA0035.20.24
MA0038.10.0201
MA0039.20.526
MA0040.10.18
MA0041.10.368
MA0042.10.595
MA0043.10.459
MA0046.10.367
MA0047.20.825
MA0048.10.0925
MA0050.10.166
MA0051.10.429
MA0052.10.0727
MA0055.10.00248
MA0057.10.864
MA0058.10.467
MA0059.10.05
MA0060.10.0209
MA0061.10.00268
MA0062.20.0361
MA0065.20.00307
MA0066.10.0122
MA0067.10.689
MA0068.10.997
MA0069.10.729
MA0070.10.148
MA0071.10.0323
MA0072.10.934
MA0073.10.63
MA0074.10.22
MA0076.10.284
MA0077.10.00129
MA0078.10.556
MA0079.20.363
MA0080.21.07771e-4
MA0081.10.0819
MA0083.10.379
MA0084.10.103
MA0087.10.026
MA0088.10.196
MA0090.10.303
MA0091.10.71
MA0092.10.334
MA0093.10.424
MA0099.23.97869e-13
MA0100.10.755
MA0101.10.00407
MA0102.20.245
MA0103.10.0393
MA0104.20.283
MA0105.12.70749e-6
MA0106.10.0146
MA0107.10.00298
MA0108.20.0188
MA0111.10.521
MA0112.20.00139
MA0113.10.439
MA0114.10.0201
MA0115.10.775
MA0116.16.48363e-4
MA0117.10.755
MA0119.10.0852
MA0122.10.369
MA0124.10.736
MA0125.10.152
MA0131.10.822
MA0135.10.00437
MA0136.11.48964e-6
MA0137.20.474
MA0138.20.248
MA0139.10.628
MA0140.10.197
MA0141.10.0152
MA0142.10.218
MA0143.10.0213
MA0144.10.592
MA0145.10.667
MA0146.10.0554
MA0147.10.116
MA0148.10.985
MA0149.10.00501
MA0150.13.3094e-4
MA0152.10.948
MA0153.10.875
MA0154.10.0346
MA0155.10.983
MA0156.16.06561e-4
MA0157.10.545
MA0159.10.0143
MA0160.10.0862
MA0162.10.16
MA0163.11.78658e-10
MA0164.10.612
MA0258.10.0243
MA0259.10.406



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10649

Novel motifP-value
10.0322
100.0224
1000.265
1010.792
1020.857
1030.0721
1040.179
1050.535
1060.0349
1070.226
1080.757
1090.00708
110.00855
1100.0381
1110.0325
1120.245
1130.465
1140.0502
1150.563
1160.193
1170.0145
1180.129
1190.12
120.769
1200.083
1210.956
1220.596
1230.549
1240.349
1250.388
1260.181
1270.448
1280.191
1290.533
130.00857
1300.803
1310.017
1320.443
1330.00732
1340.147
1350.128
1360.0135
1370.769
1380.764
1390.127
140.868
1400.163
1410.105
1420.656
1430.00891
1440.824
1450.286
1460.939
1470.684
1480.339
1490.441
150.0478
1500.126
1510.878
1520.154
1530.692
1540.521
1550.421
1560.482
1570.419
1580.239
1590.00492
160.0498
1600.183
1610.285
1620.962
1630.759
1640.00332
1650.152
1660.93
1670.442
1680.819
1690.0272
170.115
180.0411
190.441
20.786
200.105
210.0432
220.494
230.443
240.183
250.495
260.00449
270.726
280.85
290.00364
30.0271
300.436
310.993
320.00929
330.0778
340.889
350.355
360.117
370.036
380.415
390.443
41
400.155
410.482
420.182
430.117
440.0203
450.975
460.0251
470.0731
480.0644
490.225
50.925
500.62
510.438
520.918
530.574
540.661
550.698
560.608
570.201
580.35
590.169
60.69
600.131
610.157
620.15
630.347
640.121
650.305
660.283
670.297
680.735
690.42
70.164
700.0103
710.00669
720.445
730.0599
740.411
750.0121
760.128
770.302
787.15873e-4
790.146
80.0624
800.569
810.334
820.519
830.205
840.381
850.363
860.184
870.0076
880.687
890.281
90.776
900.0184
910.425
920.335
930.998
940.0288
950.0273
960.82
970.853
980.126
990.967



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10649


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002336 (corpus callosum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005162 (multi cell component structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000122 (neuron projection bundle)
0011215 (central nervous system cell part cluster)
0001018 (axon tract)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002473 (intercerebral commissure)
0005340 (dorsal telencephalic commissure)
0003544 (brain white matter)
0005970 (brain commissure)
0002316 (white matter)
0010317 (germ layer / neural crest derived structure)
0001020 (nervous system commissure)
0001017 (central nervous system)
0001016 (nervous system)
0001893 (telencephalon)
0001890 (forebrain)
0002437 (cerebral hemisphere white matter)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010042 (human corpus callosum - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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