FFCP PHASE1:Hg19::chr12:11979530..11979535,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:11979530..11979535,+ to FFCP PHASE1:Hg19::chr12:11979530..11979535,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:11979530..11979535,+ | |||
|description=CAGE_peak_at_chr12:11979530..11979535,+ | |||
|id=chr12:11979530..11979535,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.29e-30!42;CL:0000860!2.05e-28!45;CL:0000037!3.75e-27!172;CL:0000566!3.75e-27!172;CL:0002032!4.97e-27!165;CL:0000837!4.97e-27!165;CL:0000988!9.14e-27!182;CL:0000738!1.08e-26!140;CL:0000763!5.43e-26!112;CL:0000049!5.43e-26!112;CL:0000766!1.84e-23!76;CL:0002009!1.82e-22!65;CL:0000557!2.43e-22!71;CL:0002031!7.75e-22!124;CL:0002194!4.01e-21!63;CL:0000576!4.01e-21!63;CL:0000040!4.01e-21!63;CL:0000559!4.01e-21!63;CL:0000839!1.90e-20!70;CL:0002087!6.16e-20!119;CL:0000134!1.40e-07!358;CL:0002320!3.62e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.39e-72;33!CL:0002057;2.39e-72;33!CL:0000473;1.01e-56;39!CL:0000234;1.01e-56;39!CL:0000576;6.44e-39;48!CL:0000766;5.30e-28;69!CL:0000763;7.17e-14;100!CL:0000738;5.22e-12;136!CL:0000775;8.74e-10;3!CL:0002087;1.22e-09;104!CL:0002553;4.88e-08;1!CL:0000094;8.62e-08;8!CL:0000219;5.98e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.48e-74,42;CL:0002057,2.48e-74,42;CL:0000473,2.81e-70,48;CL:0000234,2.81e-70,48;CL:0000766,1.48e-57,72;CL:0002194,2.62e-55,59;CL:0000576,2.62e-55,59;CL:0000040,2.62e-55,59;CL:0000559,2.62e-55,59;CL:0002009,2.24e-53,61;CL:0000839,4.76e-49,66;CL:0000557,2.93e-48,67;CL:0000763,1.05e-46,108;CL:0000049,1.05e-46,108;CL:0000738,1.78e-33,136;CL:0002032,9.99e-30,161;CL:0000837,9.99e-30,161;CL:0000037,2.81e-28,168;CL:0000988,1.39e-26,177;CL:0002087,2.34e-26,115;CL:0002031,4.50e-25,120;CL:0000134,1.01e-11,354;CL:0002320,2.19e-11,361;CL:0000219,3.31e-10,386;CL:0000775,1.04e-09,3;CL:0000048,9.26e-09,427;CL:0000723,1.47e-08,433;CL:0000034,2.66e-08,441;CL:0002553,4.89e-08,1;CL:0000094,9.69e-08,8 | |||
|ontology_enrichment_development_v019=CL:0002057;2.01e-55;42!CL:0000049;3.24e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.04e-21!102;UBERON:0003061!9.04e-21!102;UBERON:0002193!4.49e-19!112;UBERON:0002371!1.37e-17!80;UBERON:0001474!1.25e-15!86;UBERON:0002405!3.41e-14!115;UBERON:0004765!3.45e-11!101;UBERON:0001434!3.45e-11!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.45e-42,76;UBERON:0001474,1.06e-38,82;UBERON:0004765,6.90e-35,90;UBERON:0002405,1.26e-33,93;UBERON:0002390,1.09e-31,98;UBERON:0003061,1.09e-31,98;UBERON:0001434,5.71e-31,100;UBERON:0002193,2.37e-28,108;UBERON:0002204,9.87e-17,167;UBERON:0003081,6.15e-13,203;UBERON:0002384,6.26e-11,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0.840547463227464,0.410502947249729,0.629686250509434,0,0.767658796194425,0.309632246632152,0,0,0,0.154934401160603,0.568676929949686,0,1.10799081706375,0.601633342410425,0.651032612147555,0,0,0,1.59938062657521,0.377875943688809,0.970336244751265,1.85943229524548,0.411167888021826,1.23882548358041,0.28769239232215,1.0246428261164,2.36482229888585,1.37898272294647,1.93645405075148,2.70852973188684,2.44715041405386,1.63743690034707,0.898893937780338,0.612167784741805,0.962787081228281,2.55734850319616,0.659702600373432,0.398927315243264,2.55734850319616,5.80418477257168,2.26954089876456,1.86846674698672,2.00998932205395,3.12889751052121,1.73751075764093,1.21079900526674,2.57794345191295,1.89877432464531,0,0,0.209658645508376,0,0.600707571366025,0.964353520182481,1.14005097496499,0.59675003159727,0.365328307529268,0,0,0,0.853460445133014,0,0,0,0,0,0,0,0,0.560508562981536,0.526768169550154,0.590129310341499,0.393010762749165,0.616804496998528,0,0,0,0,0.222820913770347,0,0.886135578334485,0.812411591295047,0,0.130059347559878,0.328875809207352,0.552700035571697,0,0.14828656316206,0.267540828089713,0,0.226618685395132,0.383220493601921,0.34362744548263,0.253019692019503,0,0,0,0.150575119077773,0.255973222308837,0,0,0,0.201606743224732,0.534880391567015,0.289648807765598,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,0.221729397462564,0,0.392937226493138,0,0,0,0,0.132957960518865,0.715471872916026,0.571994910780128,0.74291500265913,0.198762407366705,0,0,0.56530794192401,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0,0.367663080345869,0.81014194788176,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0.179389635688862,0,0,0,0.206105058476878,0.257640540045629,0.18611685633159,0,0,0,0,0,0.355009592516614,0.201504196455281,0.169560592310488,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0.115930404975077,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0.492663237895943,0.704387472105808,0.207328115540772,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.710783897485092,0,0,0,0,0,1.00451418286425,0,0,0,0,0,0,0,0,0.591092280605782,0.862510299438069,0.513372145118994,0,0,0,0.167516265334349,0,6.74106321552464,0,2.07207756718018,0,0,0,0.415941723061614,0,0,0,0,0,0,0,0,0.0868836144680828,0,0.343143423810856,0.206768026122887,0,0,0,0,0,0,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0,0,0,0.241718899183244,0,0,0.114814448164607,0,0.131124414959424,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0.082509499920588,0,0,0,0.193341436584244,0,0,0,0,0,0,0.178064071293475,0.165284915360978,0.192190067365106,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405820753925408,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,0.569647187174163,0,0.411362273086194,0.648473311192717,0.540031437238115,0,0,0,0,0,0,0.0711418433484141,0,0.59873811429845,0,0,0,0,0.228234679033192,0,0,0.677167111206413,0.1605880751037,0.201799707191048,0.425846237690326,0.343505344755765,0,0.447352215784832,0.166849141711909,0.390776190804081,0,0,0,0.33307196799782,1.4098700508785,0,0.73254089635947,0.121360521749513,0,0,0,0,0.307160702099232,0,0,0.111308705022906,0.16480387422676,0,0,0,0,0.102268682502155,0.492339221844278,0,0.0898683511473268,0,0,0.493217028184668,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.341826167541004,0,0.179515288819544,0,0.31900115973192,0,0.533034776018635,0,0.31396051279005,0.332423363800313,0,0,0.167821586975843,0,0.317873157960757,0,0.163232808159148,0,0,0,0.0884575645033392,0,0.296521128680622,0.247127877893006,0.208843899010911,0,0.802577647298789,0,0.729819156862664,0,0.242780379534093,0,0,0,0.884612114798832,0,0,0,0,0,0,0.569219092059585,0.138674673013139,0.173559738335131,0.0979923974143777,0,0.34945333648406,0,0,0.0730893170861856,0,0,0,0,0.137041924646751,0.19871461170299,0,0.195551382734803,0.0801588202515337,0,0,0,0.343609788497747,0.171594997861965,0,0.124252535565433,0,0.135904206073614,0.104602846312333,0.203996435272644,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0.223171457441873,0.134366944973453,0,0,0.0787831823072236,0.0824158583811665,0,0,0.0846733320657845,0,0,0,0,0,0.449947783103001,0.77380195455795,0,0,0,0.0524545881349981,0,0,0.191915197319445,0,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.213574825135389,0,0.414239055347196,0.496166021811951,0.395223263795889,0,0,0.544017803369474,0,0.306345576763462,0,0.157054096250234,0,0,0,0,0,0.124192805882767,0.138348634936231,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0.414706207840855,0,0.5217450618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| ||
|short_description=p@chr12:11979530..11979535,+ | |||
}} | }} |
Latest revision as of 05:38, 24 July 2015
Short description: | p@chr12:11979530..11979535, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:11979530..11979535, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.48e-74 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.48e-74 | 42 |
defensive cell | 2.81e-70 | 48 |
phagocyte | 2.81e-70 | 48 |
myeloid leukocyte | 1.48e-57 | 72 |
monopoietic cell | 2.62e-55 | 59 |
monocyte | 2.62e-55 | 59 |
monoblast | 2.62e-55 | 59 |
promonocyte | 2.62e-55 | 59 |
macrophage dendritic cell progenitor | 2.24e-53 | 61 |
myeloid lineage restricted progenitor cell | 4.76e-49 | 66 |
granulocyte monocyte progenitor cell | 2.93e-48 | 67 |
myeloid cell | 1.05e-46 | 108 |
common myeloid progenitor | 1.05e-46 | 108 |
leukocyte | 1.78e-33 | 136 |
hematopoietic oligopotent progenitor cell | 9.99e-30 | 161 |
hematopoietic multipotent progenitor cell | 9.99e-30 | 161 |
hematopoietic stem cell | 2.81e-28 | 168 |
hematopoietic cell | 1.39e-26 | 177 |
nongranular leukocyte | 2.34e-26 | 115 |
hematopoietic lineage restricted progenitor cell | 4.50e-25 | 120 |
mesenchymal cell | 1.01e-11 | 354 |
connective tissue cell | 2.19e-11 | 361 |
motile cell | 3.31e-10 | 386 |
neutrophil | 1.04e-09 | 3 |
multi fate stem cell | 9.26e-09 | 427 |
somatic stem cell | 1.47e-08 | 433 |
stem cell | 2.66e-08 | 441 |
lung fibroblast | 4.89e-08 | 1 |
granulocyte | 9.69e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.45e-42 | 76 |
bone element | 1.06e-38 | 82 |
skeletal element | 6.90e-35 | 90 |
immune system | 1.26e-33 | 93 |
hematopoietic system | 1.09e-31 | 98 |
blood island | 1.09e-31 | 98 |
skeletal system | 5.71e-31 | 100 |
hemolymphoid system | 2.37e-28 | 108 |
musculoskeletal system | 9.87e-17 | 167 |
lateral plate mesoderm | 6.15e-13 | 203 |
connective tissue | 6.26e-11 | 371 |