FFCP PHASE1:Hg19::chr12:53345928..53345949,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:53345928..53345949,+ to FFCP PHASE1:Hg19::chr12:53345928..53345949,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3875 | |EntrezGene=3875 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6430 | |HGNC=6430 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=402bp_to_ENST00000548496_5end | |||
|cluster_id=chr12:53345928..53345949,+ | |||
|coexpression_cluster_id=C819 | |||
|description=CAGE_peak_3_at_KRT18_5end | |||
|id=chr12:53345928..53345949,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.33e-43!254;CL:0000077!1.15e-12!19;CL:0000223!2.15e-10!59;CL:0002321!4.82e-10!248;CL:0000220!1.03e-09!246;CL:0000076!2.17e-08!62;CL:0002076!3.15e-08!43 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.21e-19;19!CL:0000349;3.65e-09;19!CL:1000449;4.25e-08;15!CL:0000039;1.00e-07;7!CL:0000586;1.00e-07;7!CL:1000507;1.58e-07;10!CL:1000494;1.58e-07;10!CL:1000497;8.66e-07;17!CL:0002518;8.66e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.51e-36,253;CL:0000077,1.63e-19,19;CL:0000223,3.53e-09,58;CL:0000349,4.46e-09,19;CL:0002321,7.54e-09,250;CL:1000449,6.16e-08,15;CL:0000039,1.57e-07,7;CL:0000586,1.57e-07,7;CL:1000507,2.06e-07,10;CL:1000494,2.06e-07,10;CL:0000213,2.83e-07,58;CL:0000215,2.83e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.96e-07;29 | |||
|ontology_enrichment_disease=DOID:305!2.58e-25!106;DOID:0050687!5.95e-21!143;DOID:162!4.97e-14!235;DOID:14566!1.77e-13!239;DOID:299!2.62e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;5.29e-10;25!DOID:305;3.61e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.46e-19,106;DOID:0050687,8.71e-16,143;DOID:299,3.50e-10,25;DOID:162,3.28e-09,235;DOID:14566,3.90e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.08e-19!169;UBERON:0000925!2.08e-19!169;UBERON:0006595!2.08e-19!169;UBERON:0001007!6.87e-17!155;UBERON:0001555!6.87e-17!155;UBERON:0007026!6.87e-17!155;UBERON:0000466!2.02e-16!126;UBERON:0004921!5.09e-16!129;UBERON:0004185!5.09e-16!129;UBERON:0000077!1.51e-15!130;UBERON:0001048!2.82e-15!168;UBERON:0005911!6.74e-15!82;UBERON:0003104!2.45e-13!238;UBERON:0009142!2.45e-13!238;UBERON:0005177!2.73e-12!107;UBERON:0009569!1.26e-11!113;UBERON:0000464!1.38e-11!104;UBERON:0003929!1.60e-11!54;UBERON:0005172!2.24e-11!55;UBERON:0005173!2.24e-11!55;UBERON:0001041!5.83e-11!98;UBERON:0002417!1.38e-10!61;UBERON:0000916!1.38e-10!61;UBERON:0006554!5.12e-10!44;UBERON:0001008!1.68e-09!45;UBERON:0003886!1.72e-09!63;UBERON:0003064!2.39e-09!37;UBERON:0005631!2.59e-09!14;UBERON:0000158!2.59e-09!14;UBERON:0008947!2.76e-09!38;UBERON:0003258!2.76e-09!38;UBERON:0002100!3.81e-09!216;UBERON:0002553!3.84e-09!70;UBERON:0000058!4.41e-09!26;UBERON:0000481!8.28e-09!347;UBERON:0000065!2.39e-08!53;UBERON:0005153!4.20e-08!37;UBERON:0003914!5.57e-08!118;UBERON:0009856!9.95e-08!26;UBERON:0007499!1.06e-07!25;UBERON:0005156!1.29e-07!59;UBERON:0000990!1.29e-07!59;UBERON:0009497!1.92e-07!25;UBERON:0000015!1.92e-07!25;UBERON:0002423!1.92e-07!25;UBERON:0006235!1.92e-07!25;UBERON:0004161!1.92e-07!25;UBERON:0002113!2.06e-07!27;UBERON:0003918!2.06e-07!27;UBERON:0005095!2.06e-07!27;UBERON:0007687!2.06e-07!27;UBERON:0001737!4.54e-07!9;UBERON:0003101!4.56e-07!22;UBERON:0000079!4.56e-07!22;UBERON:0001004!5.05e-07!72;UBERON:0000072!8.13e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;1.29e-11;25!UBERON:0001737;3.74e-10;9!UBERON:0001557;3.74e-10;9!UBERON:0005631;1.37e-08;10!UBERON:0000158;1.37e-08;10!UBERON:0005172;2.54e-08;52!UBERON:0005173;2.54e-08;52!UBERON:0006555;4.25e-08;15!UBERON:0004819;4.25e-08;15!UBERON:0001285;4.25e-08;15!UBERON:0007684;4.25e-08;15!UBERON:0002107;1.11e-07;19!UBERON:0006925;1.11e-07;19!UBERON:0004211;1.58e-07;10!UBERON:0009773;1.58e-07;10!UBERON:0001231;1.58e-07;10!UBERON:0004810;1.58e-07;10!UBERON:0000478;2.15e-07;24!UBERON:0002417;6.52e-07;58!UBERON:0000916;6.52e-07;58!UBERON:0001851;7.45e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,2.12e-14,118;UBERON:0004119,1.92e-13,160;UBERON:0000925,1.92e-13,160;UBERON:0006595,1.92e-13,160;UBERON:0005172,9.98e-13,54;UBERON:0005173,9.98e-13,54;UBERON:0005911,1.12e-12,82;UBERON:0001041,1.27e-12,87;UBERON:0005631,3.47e-12,14;UBERON:0000158,3.47e-12,14;UBERON:0001007,7.45e-12,145;UBERON:0001555,7.45e-12,145;UBERON:0007026,7.45e-12,145;UBERON:0005177,9.82e-12,101;UBERON:0007499,1.04e-11,25;UBERON:0009497,2.70e-11,25;UBERON:0000015,2.70e-11,25;UBERON:0002423,2.70e-11,25;UBERON:0006235,2.70e-11,25;UBERON:0004161,2.70e-11,25;UBERON:0002417,2.81e-11,60;UBERON:0000916,2.81e-11,60;UBERON:0003929,2.99e-11,54;UBERON:0009856,4.90e-11,26;UBERON:0003914,1.14e-10,117;UBERON:0009569,2.71e-10,112;UBERON:0001737,3.08e-10,9;UBERON:0001048,3.37e-10,160;UBERON:0002100,9.89e-10,199;UBERON:0008835,2.70e-09,22;UBERON:0003894,2.70e-09,22;UBERON:0006554,6.62e-09,47;UBERON:0003124,1.01e-08,7;UBERON:0009854,1.08e-08,23;UBERON:0006555,1.34e-08,16;UBERON:0004819,1.34e-08,16;UBERON:0001008,1.43e-08,48;UBERON:0008947,5.26e-08,38;UBERON:0003258,5.26e-08,38;UBERON:0004211,6.16e-08,15;UBERON:0009773,6.16e-08,15;UBERON:0001231,6.16e-08,15;UBERON:0001285,6.16e-08,15;UBERON:0007684,6.16e-08,15;UBERON:0004208,6.16e-08,15;UBERON:0000058,7.23e-08,19;UBERON:0002107,1.69e-07,19;UBERON:0006925,1.69e-07,19;UBERON:0008836,1.69e-07,19;UBERON:0004810,2.06e-07,10;UBERON:0000478,2.41e-07,24 | |||
|phase1_expression=0,0,0.281908808191942,0,0,4.36169262050184,0,0,0,7.61775203154677,39.0768654064559,1.96597234917155,8.70431028153897,0,0,1.34465029290355,1.20538905604795,0,1.95173119516203,0.123121058076788,1.22400414746552,0,0,0.136874425072884,0,0,0,0,0,0,0.619264493264304,0,1.204823675113,4.06729411183466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422510572623884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69490601792545,1.79007586580942,0,0,0,0,0,0.378139268656271,5.09977614163897,2.72287835648691,0.130979075497713,0.364295288292542,1.48313777113772,0,0,0,0,0,0,0.198762407366705,0,0,0,0.838998872419812,3.02629846134074,0,0,0,0,0,0,1.46437234528902,0,1.62028389576352,0.535798369704479,0,0.112611480483322,0,0,1.28241220751285,0,0,0,2.98183171017191,1.64619665163954,0.529636723252875,1.72101972449288,0.709336764396714,8.97084160227691,0,7.64669400093196,0,0.269421344139376,2.28846664358842,0.302714855289863,0,0,0,0,0,0,0,0,0,0.491337269247072,0,0,0,0,1.43723628363248,0,0.125118519871964,0,0,0,0.150238058906597,1.58805056424029,0.179389635688862,0,0,0,0,0.257640540045629,0,0.168776332241266,0,0,0,0,0,0.201504196455281,1.3564847384839,0.773043412653187,0.272746120590835,0.286804595389004,1.58565817968474,0.265059536642971,1.39432731443422,1.7622379352613,5.55105871926382,0.72995471815166,0,0,0,0,0,5.08719240171329,4.38320194203064,2.89213235860178,6.83822630940842,2.83243277320128,3.79632990577755,4.44943316928543,3.13954344200554,5.00171304030308,0,5.60967095213783,1.6462960453256,7.3504355692771,1.26755034821831,0,1.77236972004421,0,4.42758378755209,0.686271241194102,0.439001141634502,0,0.301586917234893,0.740707561268237,0,0,0,0,0.821860859650752,0.288732895522148,0.925971025153221,0.190254152234598,47.4122638775565,47.216738915218,0,0,0.148631162288728,0,0.503946384596579,1.13420077793909,0.268675568108545,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.1466765716419,1.03417372606222,0,0,1.06375246633948,2.08014873822732,0,0,0,1.57275793023962,0.542621605391443,0.823240336780769,0,2.13235169245527,1.58390374586686,6.63166629531089,6.10073421020206,22.6938689983269,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28767947683888,0.178428988797162,0.315404830067869,0,0,0,0,0,0.737476674166813,0.0868836144680828,0,0,0,0.215714200818617,0,2.72814814301633,6.65741758041988,10.2812699732091,0.248107807818777,0,0.561320188866147,0.768834895534206,0,1.28683136914886,0,0.616838775210622,1.06537035187876,0,0,0.348631135379878,7.13070752590571,9.42380410425439,1.93370076765382,1.49258782613989,0.728364672026868,0.393373244878272,3.60959690325929,4.23584354074281,1.56869953835371,2.92278449306521,1.16106791782163,1.13733384070897,0.680374821106063,1.51141141271498,0,1.08378575017541,4.51520796469368,0.509752546090077,11.6350641250021,1.34324852833307,0,0,0.512900250232778,1.31205858279882,1.30151357865721,0.206082023295445,0.366277859273374,0,0.574265537996172,0,3.21367859688319,0,0.462145851343933,0.15350367472613,0,0,0.145016693914229,0,0.178064071293475,1.81813406897076,0.960950336825531,0.638063562472921,1.11273558941105,0,0,0,0,0.532306030317022,0,0,0.143124886741991,0,0.632758849437452,8.76898892049594,0,0,0,0,0,3.0199073270966,1.17812402345686,0.202182481573316,0,0,0,0,0,0.272999822815972,3.39373036688911,0,0,0,0.438450885253763,0,0,0,2.478587984798,5.07052084558035,0.573645408816206,0.491245205065606,1.07001315444375,0,0.211107635297664,0,0,0.349934720244983,0.192444225451024,0.670302275535787,3.26672954583968,0.564862804660675,2.15252686335615,0,0,0.229723400206959,0,0,0,0,0,0,0,0,3.31154620495167,0.962479855263359,1.22520107990516,0,0,0,0,0,0,0.846694330895531,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,1.8714054040822,0,0,0,4.54617834890261,3.81991175580304,3.26661148915902,0.921482106297696,0,0,0.667852230137435,0,0.422250816255987,0,0.276283915531148,0.251932747854276,0.409074730008619,0,0,2.06697207638852,1.07412704805365,0,0.0986434056369336,0,0,0,0,0,5.72941074387513,0.349839999984783,0,2.73104275885199,1.5255219017566,5.90969204419841,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1528195219403,5.4752163089961,7.38802129069655,6.06102203490647,5.67905079091546,11.72676507241,0,0.31396051279005,0,0,0.392125068635479,0.335643173951685,0,0,6.54094000036884,4.57051862845614,2.40300221437699,0.216388639742091,1.99052386215701,0,0.611030144933625,0,0,0,0,0,0,0,0.19566461893209,2.67058417487502,1.97292201424695,1.20990716048664,0.30607276163049,0,0.150323419414493,0.622129148383483,0,0.330991955875499,0,0,0.284609546029793,0,30.1993944703128,0.0979923974143777,0.261177619741208,1.92199335066233,0,3.48322792640707,1.60796497589608,4.10577285266046,0.0969890164884194,0.706049013532002,0.225980740780532,0.548167698587004,0.794858446811959,0,2.73771935828724,1.44285876452761,2.34798294213288,18.1826744719739,1.29681375438695,0,0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| ||
|short_description=p3@KRT18 | |||
}} | }} |
Latest revision as of 01:17, 19 September 2015
Short description: | p3@KRT18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_KRT18_5end |
Coexpression cluster: | C819_Alveolar_MCF7_mesothelioma_endometrioid_signet_Renal_gastric |
Association with transcript: | 402bp_to_ENST00000548496_5end |
EntrezGene: | KRT18 |
HGNC: | 6430 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.51e-36 | 253 |
mesothelial cell | 1.63e-19 | 19 |
endodermal cell | 3.53e-09 | 58 |
extraembryonic cell | 4.46e-09 | 19 |
embryonic cell | 7.54e-09 | 250 |
epithelial cell of nephron | 6.16e-08 | 15 |
germ line cell | 1.57e-07 | 7 |
germ cell | 1.57e-07 | 7 |
kidney tubule cell | 2.06e-07 | 10 |
nephron tubule epithelial cell | 2.06e-07 | 10 |
lining cell | 2.83e-07 | 58 |
barrier cell | 2.83e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.46e-19 | 106 |
cell type cancer | 8.71e-16 | 143 |
adenocarcinoma | 3.50e-10 | 25 |
cancer | 3.28e-09 | 235 |
disease of cellular proliferation | 3.90e-09 | 239 |