FFCP PHASE1:Hg19::chr1:171711317..171711328,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:171711317..171711328,- to FFCP PHASE1:Hg19::chr1:171711317..171711328,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8674 | |EntrezGene=8674 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12645 | |HGNC=12645 | ||
|TSSclassifier=strong | |||
|UniProt=O75379,Q6IAZ3 | |UniProt=O75379,Q6IAZ3 | ||
|association_with_transcript=50bp_to_NM_001185127,NM_003762,NR_033704_5end | |||
|cluster_id=chr1:171711317..171711328,- | |||
|description=CAGE_peak_7_at_VAMP4_5end | |||
|id=chr1:171711317..171711328,- | |||
|ontology_enrichment_celltype=CL:0002057!1.96e-11!42;CL:0002194!5.92e-11!63;CL:0000576!5.92e-11!63;CL:0000040!5.92e-11!63;CL:0000559!5.92e-11!63;CL:0000860!7.92e-11!45;CL:0002009!2.77e-10!65;CL:0000839!2.16e-09!70;CL:0000766!3.50e-09!76;CL:0000557!4.12e-09!71;CL:0002087!8.55e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.45e-22;39!CL:0000234;1.45e-22;39!CL:0000235;1.19e-18;6!CL:0000860;7.20e-14;33!CL:0002057;7.20e-14;33!CL:0002574;9.77e-09;1!CL:0000576;4.73e-08;48!CL:0000766;1.35e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,4.38e-26,59;CL:0000576,4.38e-26,59;CL:0000040,4.38e-26,59;CL:0000559,4.38e-26,59;CL:0002009,3.83e-25,61;CL:0000473,4.21e-25,48;CL:0000234,4.21e-25,48;CL:0000839,4.90e-23,66;CL:0000557,1.19e-22,67;CL:0000766,6.88e-21,72;CL:0000235,1.37e-18,6;CL:0000763,7.83e-15,108;CL:0000049,7.83e-15,108;CL:0000860,1.64e-14,42;CL:0002057,1.64e-14,42;CL:0002087,9.92e-14,115;CL:0002031,5.01e-13,120;CL:0000738,4.04e-11,136;CL:0002032,3.52e-10,161;CL:0000837,3.52e-10,161;CL:0000037,1.29e-09,168;CL:0000988,5.94e-09,177;CL:0002574,9.79e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.58e-10;3!CL:0002057;4.66e-10;42!UBERON:0005425;3.69e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.88e-09!167;UBERON:0004765!3.26e-09!101;UBERON:0001434!3.26e-09!101;UBERON:0002371!3.60e-08!80;UBERON:0001474!5.18e-08!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002134;1.09e-08;1!UBERON:0005208;1.09e-08;1!UBERON:0004145;1.09e-08;1!UBERON:0005946;1.09e-08;1!UBERON:0005965;1.09e-08;1!UBERON:0002078;1.09e-08;1!UBERON:0000941;3.69e-08;1!UBERON:0001785;3.69e-08;1!UBERON:0002464;3.69e-08;1!UBERON:0004904;3.69e-08;1!UBERON:0001021;3.69e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.21e-19,76;UBERON:0001434,1.49e-18,100;UBERON:0004765,1.83e-18,90;UBERON:0001474,5.35e-18,82;UBERON:0002405,1.58e-15,93;UBERON:0002390,1.38e-14,98;UBERON:0003061,1.38e-14,98;UBERON:0002193,5.77e-13,108;UBERON:0002204,1.68e-12,167;UBERON:0002134,1.13e-08,1;UBERON:0005208,1.13e-08,1;UBERON:0005946,1.13e-08,1;UBERON:0005965,1.13e-08,1;UBERON:0002078,1.13e-08,1;UBERON:0000941,3.10e-08,1;UBERON:0001785,3.10e-08,1;UBERON:0002464,3.10e-08,1;UBERON:0004904,3.10e-08,1;UBERON:0001021,3.10e-08,1;UBERON:0003902,3.10e-08,1;UBERON:0005425,3.10e-08,1 | |||
|phase1_expression=0,0.214100523890983,0,0,0.446961094427288,0,0,0.631719873426831,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0.0764134057479513,0,0,0,0.767658796194425,0.154816123316076,0,0,0,0,0,0,0,1.00272223735071,0.651032612147555,0,0,0,0.145398238779565,0.377875943688809,0,0.697287110717054,0.411167888021826,0,2.01384674625505,0,0.236482229888585,1.03423704220986,0,1.35426486594342,0,0.545812300115692,0.224723484445085,1.22433556948361,0.641858054152187,0.639337125799041,0,0.398927315243264,0,1.45104619314292,2.8369261234557,1.24564449799115,0.502497330513487,1.0429658368404,0.434377689410233,0.605399502633369,1.47311054395026,0.949387162322653,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.411202997999018,0.167186495390678,0.651844533267181,0,0,0,0,0,0,0.384273959177026,0.130059347559878,0,0,0,0,0,0,0.226618685395132,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0.403213486449465,0.802320587350522,0.289648807765598,0,0,0,0.361439152384566,0,0.289693037921647,0.795285947051099,0.486634870302636,0,0,0,0.0654895377488563,0,0,1.62273696827342,0,3.72282289452822,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.529636723252875,0,0,0,0,0,0,0.269421344139376,0,0,0,0,0.312160076830321,0,0.298897361103602,0.23486899728753,0,0,0.204154171254893,0,0,0,0,0,0,0.168336113954066,0,2.21651292387346,0,0,0,0.113432183160021,0.179389635688862,0.213557388818567,0.211931901159562,0.300091096084402,0.206105058476878,0.257640540045629,0,0.843881661206331,0,0.252433774244115,0.460249493211497,0.161646056818812,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0.236613600079688,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,2.07986957055916,0,0.115930404975077,0.117408694235822,0,0.462985512576611,0.190254152234598,0,0,1.72351904261178,1.17002132569619,2.0808362720422,1.87467667973554,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,1.2162378064119,0,0,0,0,0,0,0.205476322550383,0.358121926479791,0,0.197030760201927,1.2937654491571,0.256686072559497,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0.630809660135739,0.234282829985426,0,0,0,0,0.184369168541703,5.64743494042539,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.328508624055237,0,0.116210378459959,0,0.200506470303285,0,0.114814448164607,0.182091168006717,0.655622074797121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290033387828457,0.170453254832202,0,0,0,0,0,0,0.62962469366128,0.6970372701606,0.308033580176089,0,0,0.37064843820784,0,0,0,0.190630193923825,0.767693373934002,0.42793898803392,0,0,1.61885211824983,0.274537029736055,0.706874414074119,0,0,0.421258456238981,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,1.15755106853338,0,0,0,0,0,0,0,0,0.633322905892992,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0.284136146806413,0,0,0.307160702099232,0,0,0,0,0,0.398495976502139,0,0,0,0.123084805461069,0.311039587661807,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,1.77148277162768,0.241192877250816,0,0.110579259931225,0.295547618953547,0.219385397153973,0,0,0,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.17472666824203,0.171986032471617,0.0967563312890851,0,0,0,0.353024506766001,0,0.137041924646751,0,0.0633107959558787,0.195551382734803,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0.837847203816763,0,3.58936512288407,0.199679000498991,0.429226048136571,0.446342914883745,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0.242998226632099,0,0.0788057072991982,0,0.105600336519406,0,0.191915197319445,0.714695326373367,0,0,0,0,0.326587360109409,0,0,0,0,0.146552233678082,0,1.29282956361551,0.66116300871345,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0.327872630709804,0,0,0.244052529803926,0.1251909307065,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.50313580350515,0,0.457680136793847,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368211900503681,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0.128458450192919,0,0,0.205116364240755,0,0.0691572524642179,0,1.42769420259154,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.135075169236789,0,0.413373593002368,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0.171488009437418,0.543757863814654,0.263091094251396,0.118193840883968,0.222462803784138,0,0.628462359664008,0,0,0,0.47775168788705,2.93053831124291,0,0.116241425368125,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| ||
|short_description=p7@VAMP4 | |||
}} | }} |
Latest revision as of 15:40, 18 September 2015
Short description: | p7@VAMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_VAMP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 50bp_to_NM_001185127, NM_003762, NR_033704_5end |
EntrezGene: | VAMP4 |
HGNC: | 12645 |
UniProt: | O75379Q6IAZ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 4.38e-26 | 59 |
monocyte | 4.38e-26 | 59 |
monoblast | 4.38e-26 | 59 |
promonocyte | 4.38e-26 | 59 |
macrophage dendritic cell progenitor | 3.83e-25 | 61 |
defensive cell | 4.21e-25 | 48 |
phagocyte | 4.21e-25 | 48 |
myeloid lineage restricted progenitor cell | 4.90e-23 | 66 |
granulocyte monocyte progenitor cell | 1.19e-22 | 67 |
myeloid leukocyte | 6.88e-21 | 72 |
macrophage | 1.37e-18 | 6 |
myeloid cell | 7.83e-15 | 108 |
common myeloid progenitor | 7.83e-15 | 108 |
classical monocyte | 1.64e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.64e-14 | 42 |
nongranular leukocyte | 9.92e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 5.01e-13 | 120 |
leukocyte | 4.04e-11 | 136 |
hematopoietic oligopotent progenitor cell | 3.52e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.52e-10 | 161 |
hematopoietic stem cell | 1.29e-09 | 168 |
hematopoietic cell | 5.94e-09 | 177 |
stromal cell of pancreas | 9.79e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.21e-19 | 76 |
skeletal system | 1.49e-18 | 100 |
skeletal element | 1.83e-18 | 90 |
bone element | 5.35e-18 | 82 |
immune system | 1.58e-15 | 93 |
hematopoietic system | 1.38e-14 | 98 |
blood island | 1.38e-14 | 98 |
hemolymphoid system | 5.77e-13 | 108 |
musculoskeletal system | 1.68e-12 | 167 |
tricuspid valve | 1.13e-08 | 1 |
right atrium valve | 1.13e-08 | 1 |
outflow tract of atrium | 1.13e-08 | 1 |
outflow part of right atrium | 1.13e-08 | 1 |
right cardiac atrium | 1.13e-08 | 1 |
cranial nerve II | 3.10e-08 | 1 |
cranial nerve | 3.10e-08 | 1 |
nerve trunk | 3.10e-08 | 1 |
nerve connecting eye with brain | 3.10e-08 | 1 |
nerve | 3.10e-08 | 1 |
retinal neural layer | 3.10e-08 | 1 |
presumptive neural retina | 3.10e-08 | 1 |