FFCP PHASE1:Hg19::chr8:90769801..90769825,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:90769801..90769825,+ to FFCP PHASE1:Hg19::chr8:90769801..90769825,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8767 | |EntrezGene=8767 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10020 | |HGNC=10020 | ||
|TSSclassifier=strong | |||
|UniProt=O43353 | |UniProt=O43353 | ||
|association_with_transcript=-149bp_to_ENST00000220751,NM_003821,uc003yee.2,uc003yef.2_5end | |||
|cluster_id=chr8:90769801..90769825,+ | |||
|coexpression_cluster_id=C514 | |||
|description=CAGE_peak_4_at_RIPK2_5end | |||
|id=chr8:90769801..90769825,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.12e-11!42;CL:0000860!3.50e-11!45;CL:0000222!2.22e-10!119;CL:0000359!2.18e-08!32;CL:0000557!8.54e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.50e-23;33!CL:0002057;7.50e-23;33!CL:0000473;1.53e-15;39!CL:0000234;1.53e-15;39!CL:0000359;1.26e-13;32!CL:0000576;9.32e-13;48!CL:0000766;2.34e-07;69!CL:0000192;3.87e-07;43!CL:0002539;4.30e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.14e-23,42;CL:0002057,2.14e-23,42;CL:0000473,2.74e-19,48;CL:0000234,2.74e-19,48;CL:0002009,1.53e-15,61;CL:0000557,2.05e-15,67;CL:0000359,3.32e-14,32;CL:0002194,1.26e-13,59;CL:0000576,1.26e-13,59;CL:0000040,1.26e-13,59;CL:0000559,1.26e-13,59;CL:0000766,2.93e-13,72;CL:0000839,3.16e-13,66;CL:0000192,4.31e-09,43;CL:0000514,4.31e-09,43;CL:0000222,1.41e-08,121;CL:0000763,2.35e-07,108;CL:0000049,2.35e-07,108;CL:0002539,4.15e-07,10;CL:0000393,4.20e-07,61;CL:0000211,4.20e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;7.41e-17;42!CL:0000514;3.87e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!2.15e-11!69;UBERON:0002049!1.04e-10!79;UBERON:0007798!1.04e-10!79;UBERON:0001981!2.54e-10!60;UBERON:0007500!2.54e-10!60;UBERON:0004537!2.54e-10!60;UBERON:0006965!2.54e-10!60;UBERON:0003081!3.04e-10!216;UBERON:0001637!7.13e-10!42;UBERON:0003509!7.13e-10!42;UBERON:0004572!7.13e-10!42;UBERON:0003914!7.82e-10!118;UBERON:0004872!1.87e-09!84;UBERON:0000926!2.38e-09!448;UBERON:0004120!2.38e-09!448;UBERON:0006603!2.38e-09!448;UBERON:0000922!5.61e-08!612;UBERON:0000923!6.13e-08!604;UBERON:0005291!6.13e-08!604;UBERON:0006598!6.13e-08!604;UBERON:0002532!6.13e-08!604;UBERON:0004535!6.85e-08!110;UBERON:0004573!6.93e-08!33;UBERON:0004571!6.93e-08!33;UBERON:0002050!8.70e-08!605;UBERON:0005423!8.70e-08!605;UBERON:0000467!2.16e-07!625;UBERON:0000480!3.03e-07!626;UBERON:0000468!3.15e-07!659;UBERON:0001009!4.36e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;6.79e-10;33!UBERON:0004571;6.79e-10;33!UBERON:0001637;2.87e-09;42!UBERON:0003509;2.87e-09;42!UBERON:0004572;2.87e-09;42!UBERON:0004237;4.30e-07;10!UBERON:0004695;4.30e-07;10!UBERON:0002111;4.30e-07;10!UBERON:0004178;4.30e-07;10!UBERON:0000055;9.52e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.92e-15,203;UBERON:0002371,1.65e-13,76;UBERON:0000055,2.87e-13,68;UBERON:0002405,3.65e-13,93;UBERON:0001637,8.25e-13,42;UBERON:0003509,8.25e-13,42;UBERON:0004572,8.25e-13,42;UBERON:0002204,1.07e-12,167;UBERON:0001474,1.10e-12,82;UBERON:0007500,2.21e-11,59;UBERON:0001981,2.21e-11,59;UBERON:0004537,2.21e-11,59;UBERON:0006965,2.21e-11,59;UBERON:0002049,2.87e-11,78;UBERON:0007798,2.87e-11,78;UBERON:0004573,5.84e-11,33;UBERON:0004571,5.84e-11,33;UBERON:0004765,1.07e-10,90;UBERON:0000926,4.19e-10,315;UBERON:0004120,4.19e-10,315;UBERON:0006603,4.19e-10,315;UBERON:0002193,7.02e-10,108;UBERON:0003914,1.20e-09,117;UBERON:0004872,1.81e-09,83;UBERON:0001434,2.01e-09,100;UBERON:0004535,1.27e-08,109;UBERON:0002390,2.06e-08,98;UBERON:0003061,2.06e-08,98;UBERON:0001009,3.85e-08,112;UBERON:0004237,4.15e-07,10;UBERON:0004695,4.15e-07,10;UBERON:0002111,4.15e-07,10;UBERON:0004178,4.15e-07,10 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0.697801167972428,0,0.527533956456907,0,0,6.05092631806598,2.41077811209591,8.76372108464848,6.34312638427659,0,0,0,0,0.136874425072884,0.251085279189606,0.152826811495903,0,0,0.393364276848904,0,1.70297735647684,0,0,0.739508020333575,0.0774672005803016,0.568676929949686,3.22960483268332,3.32397245119126,6.01633342410425,6.72733699219141,0,0.32389366601898,0,0.436194716338694,0,1.4555043671269,3.48643555358527,3.28934310417461,5.57471467611186,13.5215424391411,6.66017836975662,8.74984250587765,27.9244001396661,26.4648720269369,20.3139729891513,0.376484679085209,1.09162460023138,0.224723484445085,17.7528657575123,15.7255223267286,14.0654167675789,1.31940520074686,0.997318288108159,2.55734850319616,8.9964863974861,8.5107783703671,3.73693349397345,7.78870862295904,3.65038042894141,5.86409880703815,10.2917915447673,15.0993830754902,11.076183560431,0,0,0,0,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,1.32171328579026,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0.361439152384566,0,0,0.795285947051099,2.43317435151318,1.60709189178915,0.665188192387692,0.87834785693126,0.523916301990851,0,0,0.324547393654683,0,0.398873881556595,0.715471872916026,0,0,0.79504962946682,0,0.694281003215189,0,1.25849830862972,0.550236083880135,0.835979866147242,0.516833518338658,0.71153252537342,2.67776490211736,6.44526907374635,5.32190474002959,15.1318475679865,1.47065232138347,1.62028389576352,0.714397826272638,0.22452937262617,0.337834441449967,0,0.949265659568129,0,1.31780417436063,0,0,0,0.25326102332916,0.529636723252875,0.573673241497627,0,0,1.06748995729705,0,0,1.34710672069688,0.326923806226917,0,0,0,0.312160076830321,0.570471821544449,0.597794722207204,0.352303495931295,0,0.421352420106746,0,0,0,1.18800285728205,1.48360157567134,0,0,0,0,0,0,0,0.150238058906597,0.340296549480063,0.358779271377724,0,0,0,0.103052529238439,0.257640540045629,0.18611685633159,0,0,0.252433774244115,0.0920498986422993,0,0,0,0.169560592310488,0.193260853163297,0.545492241181669,0.286804595389004,0.121973706129595,0.397589304964456,0.116193942869518,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0.721879481669586,0.591534000199219,0,0,0,0.217879444092406,0.474541238222193,0,0.196221465125346,0,0,0,0,0,0,0.982827216677626,0,0,0,0.171567810298526,0.768251997860379,0,0,0.0925884451585296,0,0,0,0.695582429850461,0.117408694235822,115.348791761098,113.43145058127,110.727916600536,0,0,0,0.234004265139238,0,0,0,0.141775097242386,0.268675568108545,0,0,0.492663237895943,0,1.03664057770386,2.30591925467138,0.88369703398466,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0,0.07333828582095,1.16344544182,0,0,0,0,0,0,0,0.285955987316295,0,0,0.65147236858747,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0.479249710983165,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0.256686072559497,0.254094624222463,1.30139853857622,3.09315525111078,0.335032530668698,0,0,0,0.828831026872071,0.12269149171914,0.500170521059677,0.542530047399471,0.207970861530807,0.178428988797162,0.157702415033935,0.234282829985426,0.300946099727719,0,0,0,0.553107505625109,0.0868836144680828,0,0,0,0.431428401637234,0.426910231213777,0.909382714338778,0,0.30239029332968,0.496215615637554,0.153461973288062,0,0,0,0,0,0.154209693802656,0.177561725313127,0,0.519254429183621,0.348631135379878,0.120859449591622,0.200506470303285,0.276242966807689,0,0.182091168006717,0.655622074797121,0.451199612907412,0.770153371044148,0,1.46139224653261,3.79985864014353,0,0.170093705276516,0.215915916102139,1.54227252690289,0,0,0.254876273045038,1.66215201785745,0.447749509444357,0,0,0.256450125116389,0,0.650756789328606,1.03041011647722,0,0,1.14853107599234,0.650060246036521,0,0.870036464629098,0.154048617114644,0,0.137836572484531,0.107420244868274,0.435050081742686,0.596586391912706,0.267096106940212,0.165284915360978,0,0.382838137483752,0,0,0.31481234683064,2.0911118104818,10.7811753061631,2.66153015158511,0.869932992075073,2.03856641014312,5.29562080945368,0.744316738719335,0,0.190630193923825,0,0,0,11.7742296029885,0.179872457583315,0.274537029736055,0.235624804691373,2.02182481573316,0,2.52755073743389,0,34.8510290172737,3.16950440270266,0,0,1.13008116620243,0,17.2494133562717,21.9225442626881,0,0.655894752046633,1.42037263873893,2.16876448669825,0,0.286822704408103,0.392996164052485,1.426684205925,0,2.11107635297664,0.329294892959902,0,0,0,0,0,0.376575203107117,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0.962479855263359,0.735120647943095,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0.18714054040822,0.293016358543788,0.121360521749513,0,0,0.23874448473769,0.296964680832639,0,0,0.140669416410513,0.890469640183247,0,0,0.796991953004279,1.10513566212459,0.251932747854276,0,0.861593638227486,0,0.269605053441981,0.358042349351218,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0.26237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|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0.697801167972428,0,0.527533956456907,0,0,6.05092631806598,2.41077811209591,8.76372108464848,6.34312638427659,0,0,0,0,0.136874425072884,0.251085279189606,0.152826811495903,0,0,0.393364276848904,0,1.70297735647684,0,0,0.739508020333575,0.0774672005803016,0.568676929949686,3.22960483268332,3.32397245119126,6.01633342410425,6.72733699219141,0,0.32389366601898,0,0.436194716338694,0,1.4555043671269,3.48643555358527,3.28934310417461,5.57471467611186,13.5215424391411,6.66017836975662,8.74984250587765,27.9244001396661,26.4648720269369,20.3139729891513,0.376484679085209,1.09162460023138,0.224723484445085,17.7528657575123,15.7255223267286,14.0654167675789,1.31940520074686,0.997318288108159,2.55734850319616,8.9964863974861,8.5107783703671,3.73693349397345,7.78870862295904,3.65038042894141,5.86409880703815,10.2917915447673,15.0993830754902,11.076183560431,0,0,0,0,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,1.32171328579026,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0.361439152384566,0,0,0.795285947051099,2.43317435151318,1.60709189178915,0.665188192387692,0.87834785693126,0.523916301990851,0,0,0.324547393654683,0,0.398873881556595,0.715471872916026,0,0,0.79504962946682,0,0.694281003215189,0,1.25849830862972,0.550236083880135,0.835979866147242,0.516833518338658,0.71153252537342,2.67776490211736,6.44526907374635,5.32190474002959,15.1318475679865,1.47065232138347,1.62028389576352,0.714397826272638,0.22452937262617,0.337834441449967,0,0.949265659568129,0,1.31780417436063,0,0,0,0.25326102332916,0.529636723252875,0.573673241497627,0,0,1.06748995729705,0,0,1.34710672069688,0.326923806226917,0,0,0,0.312160076830321,0.570471821544449,0.597794722207204,0.352303495931295,0,0.421352420106746,0,0,0,1.18800285728205,1.48360157567134,0,0,0,0,0,0,0,0.150238058906597,0.340296549480063,0.358779271377724,0,0,0,0.103052529238439,0.257640540045629,0.18611685633159,0,0,0.252433774244115,0.0920498986422993,0,0,0,0.169560592310488,0.193260853163297,0.545492241181669,0.286804595389004,0.121973706129595,0.397589304964456,0.116193942869518,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0.721879481669586,0.591534000199219,0,0,0,0.217879444092406,0.474541238222193,0,0.196221465125346,0,0,0,0,0,0,0.982827216677626,0,0,0,0.171567810298526,0.768251997860379,0,0,0.0925884451585296,0,0,0,0.695582429850461,0.117408694235822,115.348791761098,113.43145058127,110.727916600536,0,0,0,0.234004265139238,0,0,0,0.141775097242386,0.268675568108545,0,0,0.492663237895943,0,1.03664057770386,2.30591925467138,0.88369703398466,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0,0.07333828582095,1.16344544182,0,0,0,0,0,0,0,0.285955987316295,0,0,0.65147236858747,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0.479249710983165,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0.256686072559497,0.254094624222463,1.30139853857622,3.09315525111078,0.335032530668698,0,0,0,0.828831026872071,0.12269149171914,0.500170521059677,0.542530047399471,0.207970861530807,0.178428988797162,0.157702415033935,0.234282829985426,0.300946099727719,0,0,0,0.553107505625109,0.0868836144680828,0,0,0,0.431428401637234,0.426910231213777,0.909382714338778,0,0.30239029332968,0.496215615637554,0.153461973288062,0,0,0,0,0,0.154209693802656,0.177561725313127,0,0.519254429183621,0.348631135379878,0.120859449591622,0.200506470303285,0.276242966807689,0,0.182091168006717,0.655622074797121,0.451199612907412,0.770153371044148,0,1.46139224653261,3.79985864014353,0,0.170093705276516,0.215915916102139,1.54227252690289,0,0,0.254876273045038,1.66215201785745,0.447749509444357,0,0,0.256450125116389,0,0.650756789328606,1.03041011647722,0,0,1.14853107599234,0.650060246036521,0,0.870036464629098,0.154048617114644,0,0.137836572484531,0.107420244868274,0.435050081742686,0.596586391912706,0.267096106940212,0.165284915360978,0,0.382838137483752,0,0,0.31481234683064,2.0911118104818,10.7811753061631,2.66153015158511,0.869932992075073,2.03856641014312,5.29562080945368,0.744316738719335,0,0.190630193923825,0,0,0,11.7742296029885,0.179872457583315,0.274537029736055,0.235624804691373,2.02182481573316,0,2.52755073743389,0,34.8510290172737,3.16950440270266,0,0,1.13008116620243,0,17.2494133562717,21.9225442626881,0,0.655894752046633,1.42037263873893,2.16876448669825,0,0.286822704408103,0.392996164052485,1.426684205925,0,2.11107635297664,0.329294892959902,0,0,0,0,0,0.376575203107117,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0.962479855263359,0.735120647943095,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0.18714054040822,0.293016358543788,0.121360521749513,0,0,0.23874448473769,0.296964680832639,0,0,0.140669416410513,0.890469640183247,0,0,0.796991953004279,1.10513566212459,0.251932747854276,0,0.861593638227486,0,0.269605053441981,0.358042349351218,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0.26237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| ||
|short_description=p4@RIPK2 | |||
}} | }} |
Latest revision as of 09:37, 19 September 2015
Short description: | p4@RIPK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RIPK2_5end |
Coexpression cluster: | C514_Lymphatic_Endothelial_mycosis_appendix_heart_CD14_migratory |
Association with transcript: | -149bp_to_ENST00000220751, NM_003821, uc003yee.2, uc003yef.2_5end |
EntrezGene: | RIPK2 |
HGNC: | 10020 |
UniProt: | O43353 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.14e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.14e-23 | 42 |
defensive cell | 2.74e-19 | 48 |
phagocyte | 2.74e-19 | 48 |
macrophage dendritic cell progenitor | 1.53e-15 | 61 |
granulocyte monocyte progenitor cell | 2.05e-15 | 67 |
vascular associated smooth muscle cell | 3.32e-14 | 32 |
monopoietic cell | 1.26e-13 | 59 |
monocyte | 1.26e-13 | 59 |
monoblast | 1.26e-13 | 59 |
promonocyte | 1.26e-13 | 59 |
myeloid leukocyte | 2.93e-13 | 72 |
myeloid lineage restricted progenitor cell | 3.16e-13 | 66 |
smooth muscle cell | 4.31e-09 | 43 |
smooth muscle myoblast | 4.31e-09 | 43 |
mesodermal cell | 1.41e-08 | 121 |
myeloid cell | 2.35e-07 | 108 |
common myeloid progenitor | 2.35e-07 | 108 |
aortic smooth muscle cell | 4.15e-07 | 10 |
electrically responsive cell | 4.20e-07 | 61 |
electrically active cell | 4.20e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.92e-15 | 203 |
bone marrow | 1.65e-13 | 76 |
vessel | 2.87e-13 | 68 |
immune system | 3.65e-13 | 93 |
artery | 8.25e-13 | 42 |
arterial blood vessel | 8.25e-13 | 42 |
arterial system | 8.25e-13 | 42 |
musculoskeletal system | 1.07e-12 | 167 |
bone element | 1.10e-12 | 82 |
epithelial tube open at both ends | 2.21e-11 | 59 |
blood vessel | 2.21e-11 | 59 |
blood vasculature | 2.21e-11 | 59 |
vascular cord | 2.21e-11 | 59 |
vasculature | 2.87e-11 | 78 |
vascular system | 2.87e-11 | 78 |
systemic artery | 5.84e-11 | 33 |
systemic arterial system | 5.84e-11 | 33 |
skeletal element | 1.07e-10 | 90 |
mesoderm | 4.19e-10 | 315 |
mesoderm-derived structure | 4.19e-10 | 315 |
presumptive mesoderm | 4.19e-10 | 315 |
hemolymphoid system | 7.02e-10 | 108 |
epithelial tube | 1.20e-09 | 117 |
splanchnic layer of lateral plate mesoderm | 1.81e-09 | 83 |
skeletal system | 2.01e-09 | 100 |
cardiovascular system | 1.27e-08 | 109 |
hematopoietic system | 2.06e-08 | 98 |
blood island | 2.06e-08 | 98 |
circulatory system | 3.85e-08 | 112 |
blood vessel smooth muscle | 4.15e-07 | 10 |
arterial system smooth muscle | 4.15e-07 | 10 |
artery smooth muscle tissue | 4.15e-07 | 10 |
aorta smooth muscle tissue | 4.15e-07 | 10 |