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{{f5samples
{{f5samples
|id=FF:10438-106E6
|DRA_sample_Accession=CAGE@SAMD00005289
|name=ductal cell carcinoma cell line:KLM-1, biol_rep1
|accession_numbers=CAGE;DRX007868;DRR008740;DRZ000165;DRZ001550;DRZ011515;DRZ012900
|sample_id=10438
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
|rna_tube_id=106E6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000083,CL:0000255
|rna_box=106
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:170,DOID:1793,DOID:4074,DOID:4905,DOID:3498
|rna_position=E6
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB2138
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000223
|sample_tissue=pancreas
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|rna_rin=8.70000
|rna_od260/230=2.01000
|rna_od260/280=2.03000
|sample_cell_type=duct cell
|sample_cell_line=KLM-1
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=ductal cell carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=71.45025
|rna_concentration=2.85801
|sample_note=
|profile_hcage=CNhs11100,LSID733,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000058,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000160,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001045,UBERON:0001048,UBERON:0001062,UBERON:0001264,UBERON:0001555,UBERON:0002050,UBERON:0002075,UBERON:0002100,UBERON:0002108,UBERON:0002114,UBERON:0002323,UBERON:0002532,UBERON:0002553,UBERON:0003104,UBERON:0003921,UBERON:0003922,UBERON:0003923,UBERON:0003924,UBERON:0003928,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004458,UBERON:0004921,UBERON:0005177,UBERON:0005409,UBERON:0005423,UBERON:0007026,UBERON:0007329,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:162,DOID:170,DOID:1793,DOID:305,DOID:3498,DOID:4,DOID:4074,DOID:4905
|sample_description=
 
|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg38.nobarcode.ctss.bed.gz
|id=FF:10438-106E6
|is_a=CL:0000083;;DOID:3498;;EFO:0002091;;FF:0000210;;FF:0100297
|is_obsolete=
|library_id=CNhs11100
|library_id_phase_based=2:CNhs11100
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10438
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10438
|name=ductal cell carcinoma cell line:KLM-1
|namespace=FANTOM5
|part_of=
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|profile_hcage=CNhs11100,LSID733,release008,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=106
|rna_catalog_number=
|rna_concentration=2.85801
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.01
|rna_od260/280=2.03
|rna_position=E6
|rna_rin=8.7
|rna_sample_type=total RNA
|rna_tube_id=1.06E+08
|rna_weight_ug=71.45025
|sample_age=
|sample_category=cell lines
|sample_cell_catalog=RCB2138
|sample_cell_line=KLM-1
|sample_cell_lot=
|sample_cell_type=duct cell
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=ductal cell carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.9974971134952e-261!GO:0043226;organelle;1.48709680044843e-212!GO:0043229;intracellular organelle;6.00531781070824e-212!GO:0043231;intracellular membrane-bound organelle;1.41402748604563e-206!GO:0043227;membrane-bound organelle;1.69030111461336e-206!GO:0005737;cytoplasm;2.32139602840281e-181!GO:0044422;organelle part;5.00436635173266e-158!GO:0044446;intracellular organelle part;1.79960177685636e-156!GO:0044444;cytoplasmic part;9.37152107222445e-120!GO:0032991;macromolecular complex;7.43374230524119e-103!GO:0005634;nucleus;1.04930943353009e-94!GO:0044237;cellular metabolic process;2.94467306944239e-89!GO:0044238;primary metabolic process;1.26971500599494e-86!GO:0030529;ribonucleoprotein complex;4.01397195884696e-85!GO:0044428;nuclear part;7.68927566635294e-84!GO:0003723;RNA binding;5.33779966618172e-83!GO:0043170;macromolecule metabolic process;5.81949093621914e-83!GO:0043233;organelle lumen;3.25768501483024e-77!GO:0031974;membrane-enclosed lumen;3.25768501483024e-77!GO:0005515;protein binding;1.13992310843152e-72!GO:0005739;mitochondrion;2.21965706845428e-64!GO:0006396;RNA processing;3.89191144968834e-56!GO:0043234;protein complex;6.56486095545007e-53!GO:0043283;biopolymer metabolic process;8.74153645347256e-52!GO:0006412;translation;2.97242215095684e-51!GO:0016043;cellular component organization and biogenesis;3.24254649293036e-49!GO:0031981;nuclear lumen;1.1991213104048e-48!GO:0005840;ribosome;3.689445870903e-48!GO:0019538;protein metabolic process;5.90136484603914e-47!GO:0031090;organelle membrane;1.19068910894509e-45!GO:0043228;non-membrane-bound organelle;2.40005708132138e-45!GO:0043232;intracellular non-membrane-bound organelle;2.40005708132138e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.04226131172984e-44!GO:0015031;protein transport;1.34334035131002e-43!GO:0010467;gene expression;2.06247221059037e-43!GO:0033036;macromolecule localization;5.86379755402823e-43!GO:0044267;cellular protein metabolic process;7.45846893033876e-43!GO:0044260;cellular macromolecule metabolic process;1.34276372255051e-42!GO:0003735;structural constituent of ribosome;7.62426743587651e-42!GO:0016071;mRNA metabolic process;9.56158952687969e-42!GO:0044429;mitochondrial part;6.26310393582412e-41!GO:0031967;organelle envelope;7.5160725760961e-40!GO:0031975;envelope;1.36757151946277e-39!GO:0044249;cellular biosynthetic process;2.07902997794016e-39!GO:0005829;cytosol;2.16292854094676e-39!GO:0045184;establishment of protein localization;5.71629104625155e-39!GO:0008380;RNA splicing;1.69995443047506e-38!GO:0008104;protein localization;5.46482259523483e-38!GO:0009058;biosynthetic process;1.46158062728525e-37!GO:0006259;DNA metabolic process;3.07821234192695e-37!GO:0006996;organelle organization and biogenesis;5.87732020105192e-37!GO:0006397;mRNA processing;5.99643962882885e-37!GO:0033279;ribosomal subunit;5.99643962882885e-37!GO:0009059;macromolecule biosynthetic process;1.31026865467107e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.19279742139604e-34!GO:0046907;intracellular transport;7.68509054207401e-34!GO:0065003;macromolecular complex assembly;3.71602588792845e-32!GO:0007049;cell cycle;8.93017383398162e-30!GO:0005654;nucleoplasm;6.71822948848934e-29!GO:0000166;nucleotide binding;1.47001623142878e-28!GO:0006886;intracellular protein transport;1.55007128706605e-28!GO:0003676;nucleic acid binding;2.17989919362166e-28!GO:0022607;cellular component assembly;8.52829555476413e-28!GO:0005681;spliceosome;8.59246717246436e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.55493123142262e-26!GO:0005740;mitochondrial envelope;2.96047345761292e-24!GO:0044451;nucleoplasm part;5.82496681521198e-24!GO:0051649;establishment of cellular localization;6.73461951054935e-24!GO:0019866;organelle inner membrane;1.5264405021444e-23!GO:0016462;pyrophosphatase activity;1.91088518023549e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.92263574173564e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.9345591016281e-23!GO:0051641;cellular localization;6.86444810548602e-23!GO:0017111;nucleoside-triphosphatase activity;7.05003329308264e-23!GO:0044445;cytosolic part;7.40934079360649e-23!GO:0031966;mitochondrial membrane;1.44522232637278e-22!GO:0006974;response to DNA damage stimulus;1.76259477286292e-22!GO:0016874;ligase activity;2.84368223193685e-22!GO:0005730;nucleolus;2.85275221755279e-22!GO:0022402;cell cycle process;3.43195138210828e-22!GO:0005694;chromosome;5.18631363236662e-22!GO:0005743;mitochondrial inner membrane;6.30701933034034e-22!GO:0006119;oxidative phosphorylation;9.07317713706831e-21!GO:0012505;endomembrane system;2.30763467300882e-20!GO:0000278;mitotic cell cycle;3.76176203764481e-20!GO:0016070;RNA metabolic process;3.95017323725324e-20!GO:0006512;ubiquitin cycle;4.25316618442815e-20!GO:0031980;mitochondrial lumen;8.29840770461618e-20!GO:0005759;mitochondrial matrix;8.29840770461618e-20!GO:0032553;ribonucleotide binding;8.75739945696693e-20!GO:0032555;purine ribonucleotide binding;8.75739945696693e-20!GO:0015935;small ribosomal subunit;1.39571231672119e-19!GO:0017076;purine nucleotide binding;2.38536803522057e-19!GO:0006281;DNA repair;3.84757235155415e-19!GO:0022618;protein-RNA complex assembly;3.95287229953244e-19!GO:0044427;chromosomal part;4.31579841677172e-19!GO:0044265;cellular macromolecule catabolic process;5.11769962484036e-19!GO:0043285;biopolymer catabolic process;8.59659506295857e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;1.4137331827099e-18!GO:0015934;large ribosomal subunit;2.27741037164302e-18!GO:0019941;modification-dependent protein catabolic process;2.48576932838208e-18!GO:0043632;modification-dependent macromolecule catabolic process;2.48576932838208e-18!GO:0044257;cellular protein catabolic process;4.91235060205446e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.26174398483139e-18!GO:0008135;translation factor activity, nucleic acid binding;7.44239192524486e-18!GO:0008134;transcription factor binding;1.11425343017559e-17!GO:0022403;cell cycle phase;4.31045556032439e-17!GO:0051276;chromosome organization and biogenesis;6.75364220354585e-17!GO:0009057;macromolecule catabolic process;8.31384797233634e-17!GO:0048770;pigment granule;8.56394236640881e-17!GO:0042470;melanosome;8.56394236640881e-17!GO:0005524;ATP binding;9.38768839289223e-17!GO:0000087;M phase of mitotic cell cycle;9.46525601065639e-17!GO:0032559;adenyl ribonucleotide binding;1.39478068460123e-16!GO:0007067;mitosis;2.18654798259706e-16!GO:0030163;protein catabolic process;2.67730712950844e-16!GO:0009719;response to endogenous stimulus;2.87595773124348e-16!GO:0006457;protein folding;2.98475987352032e-16!GO:0006260;DNA replication;4.5251103444851e-16!GO:0042254;ribosome biogenesis and assembly;4.5251103444851e-16!GO:0044455;mitochondrial membrane part;4.5251103444851e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.54948606037601e-16!GO:0030554;adenyl nucleotide binding;5.49706798415792e-16!GO:0051301;cell division;7.94689134249851e-16!GO:0005635;nuclear envelope;8.48044975508747e-16!GO:0005761;mitochondrial ribosome;2.64555849574152e-15!GO:0000313;organellar ribosome;2.64555849574152e-15!GO:0006605;protein targeting;3.18643443676963e-15!GO:0044248;cellular catabolic process;3.34399514109947e-15!GO:0043412;biopolymer modification;4.50330199143994e-15!GO:0000279;M phase;5.07593008115638e-15!GO:0051186;cofactor metabolic process;1.07012962782261e-14!GO:0004386;helicase activity;1.10679941545325e-14!GO:0031965;nuclear membrane;1.801789000143e-14!GO:0016887;ATPase activity;1.83204165294934e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.73381161595259e-14!GO:0044453;nuclear membrane part;4.29037210184618e-14!GO:0005794;Golgi apparatus;4.89862429478422e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;6.91246753486037e-14!GO:0000375;RNA splicing, via transesterification reactions;6.91246753486037e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.91246753486037e-14!GO:0005746;mitochondrial respiratory chain;9.04190200462538e-14!GO:0006403;RNA localization;1.04977386420376e-13!GO:0050657;nucleic acid transport;1.41816129484423e-13!GO:0051236;establishment of RNA localization;1.41816129484423e-13!GO:0050658;RNA transport;1.41816129484423e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.56573404238744e-13!GO:0042623;ATPase activity, coupled;1.6751879286952e-13!GO:0005643;nuclear pore;2.76185592994808e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.08024232913127e-13!GO:0003954;NADH dehydrogenase activity;3.08024232913127e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.08024232913127e-13!GO:0006913;nucleocytoplasmic transport;3.08764556237552e-13!GO:0005783;endoplasmic reticulum;3.23892190969659e-13!GO:0006366;transcription from RNA polymerase II promoter;4.71687987210483e-13!GO:0003743;translation initiation factor activity;4.82183053548956e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.10559894980137e-13!GO:0006732;coenzyme metabolic process;7.5905579801969e-13!GO:0051169;nuclear transport;7.61827928408479e-13!GO:0008026;ATP-dependent helicase activity;8.51528214938831e-13!GO:0006464;protein modification process;9.6277587559328e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.02958177825915e-12!GO:0044432;endoplasmic reticulum part;3.09344416867845e-12!GO:0051082;unfolded protein binding;3.22982968646308e-12!GO:0048193;Golgi vesicle transport;3.31459726671682e-12!GO:0006413;translational initiation;3.54689109228389e-12!GO:0043687;post-translational protein modification;4.21622176004516e-12!GO:0006323;DNA packaging;4.26219334776084e-12!GO:0006399;tRNA metabolic process;6.02663462320832e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.20243796898158e-11!GO:0042773;ATP synthesis coupled electron transport;1.20243796898158e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.51457177999292e-11!GO:0016604;nuclear body;1.66237823931942e-11!GO:0003712;transcription cofactor activity;1.69290179005708e-11!GO:0051028;mRNA transport;1.74642958449058e-11!GO:0015630;microtubule cytoskeleton;2.10968778574299e-11!GO:0008639;small protein conjugating enzyme activity;2.1829672996432e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.60107076074185e-11!GO:0045271;respiratory chain complex I;2.60107076074185e-11!GO:0005747;mitochondrial respiratory chain complex I;2.60107076074185e-11!GO:0004842;ubiquitin-protein ligase activity;4.73263122828679e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.07221117958534e-11!GO:0006446;regulation of translational initiation;6.77688446869724e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.05564687181074e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.93080052185407e-11!GO:0019787;small conjugating protein ligase activity;9.06920050843875e-11!GO:0012501;programmed cell death;1.09364309861787e-10!GO:0006915;apoptosis;1.1564435163617e-10!GO:0006364;rRNA processing;1.30619045891627e-10!GO:0008565;protein transporter activity;1.33363903832467e-10!GO:0065002;intracellular protein transport across a membrane;1.38431924078182e-10!GO:0051726;regulation of cell cycle;2.22780263266857e-10!GO:0016072;rRNA metabolic process;2.24844005129812e-10!GO:0000785;chromatin;2.37401985907089e-10!GO:0000074;regulation of progression through cell cycle;3.23368399284697e-10!GO:0046930;pore complex;3.60362658217562e-10!GO:0016192;vesicle-mediated transport;6.27262280450106e-10!GO:0016881;acid-amino acid ligase activity;6.80484275616395e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.72601528837139e-09!GO:0008219;cell death;2.1307095160451e-09!GO:0016265;death;2.1307095160451e-09!GO:0016607;nuclear speck;2.37787499919654e-09!GO:0017038;protein import;2.52461715113618e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.65823055874855e-09!GO:0009055;electron carrier activity;3.30144055447383e-09!GO:0006461;protein complex assembly;4.74680839667626e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.0535404956713e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.0535404956713e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.0535404956713e-09!GO:0005789;endoplasmic reticulum membrane;6.22239991899461e-09!GO:0009056;catabolic process;6.5284961591004e-09!GO:0032446;protein modification by small protein conjugation;1.22906178387856e-08!GO:0043038;amino acid activation;1.2736132746792e-08!GO:0006418;tRNA aminoacylation for protein translation;1.2736132746792e-08!GO:0043039;tRNA aminoacylation;1.2736132746792e-08!GO:0065004;protein-DNA complex assembly;1.49430691659601e-08!GO:0016779;nucleotidyltransferase activity;1.69306814258756e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.69306814258756e-08!GO:0016567;protein ubiquitination;1.74508751136382e-08!GO:0043566;structure-specific DNA binding;1.83185415145573e-08!GO:0015986;ATP synthesis coupled proton transport;1.87881484659099e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.87881484659099e-08!GO:0005813;centrosome;3.3958012942362e-08!GO:0005819;spindle;3.49214661314567e-08!GO:0009060;aerobic respiration;3.55267392254694e-08!GO:0006333;chromatin assembly or disassembly;3.69636794756554e-08!GO:0016568;chromatin modification;3.91282387849838e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.23510026825192e-08!GO:0051188;cofactor biosynthetic process;4.76635525191655e-08!GO:0009259;ribonucleotide metabolic process;7.70242180695354e-08!GO:0005815;microtubule organizing center;8.68761068161555e-08!GO:0006261;DNA-dependent DNA replication;9.94876760500286e-08!GO:0006163;purine nucleotide metabolic process;1.0688548711741e-07!GO:0005667;transcription factor complex;1.44009263071841e-07!GO:0051246;regulation of protein metabolic process;1.54281753994906e-07!GO:0000775;chromosome, pericentric region;1.60939951946823e-07!GO:0045333;cellular respiration;1.94876776815457e-07!GO:0006164;purine nucleotide biosynthetic process;2.10861235775382e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.13464575958135e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.13464575958135e-07!GO:0009260;ribonucleotide biosynthetic process;2.31931717687677e-07!GO:0016787;hydrolase activity;2.57321244591483e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.20608708318472e-07!GO:0019829;cation-transporting ATPase activity;3.41477137187097e-07!GO:0009108;coenzyme biosynthetic process;3.41477137187097e-07!GO:0009141;nucleoside triphosphate metabolic process;3.4434521191488e-07!GO:0050794;regulation of cellular process;3.64030213391587e-07!GO:0016740;transferase activity;3.67557352402607e-07!GO:0006754;ATP biosynthetic process;4.04236608391789e-07!GO:0006753;nucleoside phosphate metabolic process;4.04236608391789e-07!GO:0003697;single-stranded DNA binding;4.22877826515244e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.3938965668813e-07!GO:0005768;endosome;4.47104646048655e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.74587819441589e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.74587819441589e-07!GO:0009150;purine ribonucleotide metabolic process;5.2740125142858e-07!GO:0005793;ER-Golgi intermediate compartment;5.40437667681347e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.75478091894239e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.75478091894239e-07!GO:0003724;RNA helicase activity;7.35736526480766e-07!GO:0051170;nuclear import;9.02692378560951e-07!GO:0046034;ATP metabolic process;9.12731489838861e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.40331949321495e-07!GO:0016469;proton-transporting two-sector ATPase complex;9.86219413096509e-07!GO:0043623;cellular protein complex assembly;1.02721240890975e-06!GO:0007005;mitochondrion organization and biogenesis;1.03084801090629e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.0410314995405e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.21159328458915e-06!GO:0044431;Golgi apparatus part;1.21394031182503e-06!GO:0006099;tricarboxylic acid cycle;1.27052807576064e-06!GO:0046356;acetyl-CoA catabolic process;1.27052807576064e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.44988095689812e-06!GO:0007051;spindle organization and biogenesis;1.71860778284042e-06!GO:0042981;regulation of apoptosis;1.71860778284042e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.80424372576685e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.90655338310189e-06!GO:0003924;GTPase activity;1.94513615571289e-06!GO:0000245;spliceosome assembly;2.02061295227985e-06!GO:0051427;hormone receptor binding;2.10659008890427e-06!GO:0006084;acetyl-CoA metabolic process;2.41431518170698e-06!GO:0043067;regulation of programmed cell death;2.51044247194335e-06!GO:0006606;protein import into nucleus;2.60677370589849e-06!GO:0048475;coated membrane;2.63696575929149e-06!GO:0030117;membrane coat;2.63696575929149e-06!GO:0006752;group transfer coenzyme metabolic process;2.67350610792048e-06!GO:0006793;phosphorus metabolic process;3.3891883316768e-06!GO:0006796;phosphate metabolic process;3.3891883316768e-06!GO:0003713;transcription coactivator activity;3.45286260148558e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.95460522076699e-06!GO:0035257;nuclear hormone receptor binding;4.51979296360927e-06!GO:0009109;coenzyme catabolic process;4.58868793976648e-06!GO:0004298;threonine endopeptidase activity;4.59059877463964e-06!GO:0000151;ubiquitin ligase complex;5.0393299189915e-06!GO:0005657;replication fork;5.57370024783168e-06!GO:0016564;transcription repressor activity;5.70673814137774e-06!GO:0045259;proton-transporting ATP synthase complex;5.90697790465021e-06!GO:0051168;nuclear export;5.94163814649393e-06!GO:0030120;vesicle coat;6.78683329540719e-06!GO:0030662;coated vesicle membrane;6.78683329540719e-06!GO:0016563;transcription activator activity;6.82178339150614e-06!GO:0006613;cotranslational protein targeting to membrane;8.32401128919598e-06!GO:0048523;negative regulation of cellular process;9.48533114772864e-06!GO:0051187;cofactor catabolic process;1.06905617871851e-05!GO:0003899;DNA-directed RNA polymerase activity;1.17106618118434e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.23902349980667e-05!GO:0048471;perinuclear region of cytoplasm;1.41125121777637e-05!GO:0008186;RNA-dependent ATPase activity;1.68264926923357e-05!GO:0031988;membrane-bound vesicle;1.73328871220065e-05!GO:0009117;nucleotide metabolic process;1.74140569918417e-05!GO:0051329;interphase of mitotic cell cycle;1.95041768693786e-05!GO:0043069;negative regulation of programmed cell death;2.1918594063125e-05!GO:0031324;negative regulation of cellular metabolic process;2.19347729904664e-05!GO:0003690;double-stranded DNA binding;2.21610860918857e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.29395580900811e-05!GO:0005525;GTP binding;2.65435272773048e-05!GO:0043066;negative regulation of apoptosis;2.79966833747007e-05!GO:0051325;interphase;2.84929676473859e-05!GO:0044452;nucleolar part;2.9128965870688e-05!GO:0044440;endosomal part;3.44860568947128e-05!GO:0010008;endosome membrane;3.44860568947128e-05!GO:0005762;mitochondrial large ribosomal subunit;3.86868767001259e-05!GO:0000315;organellar large ribosomal subunit;3.86868767001259e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.01567833260303e-05!GO:0006302;double-strand break repair;4.27124624248326e-05!GO:0006334;nucleosome assembly;4.52282885120833e-05!GO:0004004;ATP-dependent RNA helicase activity;5.33452601952168e-05!GO:0000139;Golgi membrane;5.56084811362601e-05!GO:0048519;negative regulation of biological process;5.58747338055917e-05!GO:0000314;organellar small ribosomal subunit;5.65372143853259e-05!GO:0005763;mitochondrial small ribosomal subunit;5.65372143853259e-05!GO:0009892;negative regulation of metabolic process;5.8535030666361e-05!GO:0005770;late endosome;6.23596080553193e-05!GO:0008094;DNA-dependent ATPase activity;6.28835202315732e-05!GO:0003682;chromatin binding;6.70237332140765e-05!GO:0031497;chromatin assembly;6.76753779549656e-05!GO:0016310;phosphorylation;6.76753779549656e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.50274573631939e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.98333261734841e-05!GO:0005773;vacuole;8.39582770246859e-05!GO:0006916;anti-apoptosis;8.84601266442841e-05!GO:0006402;mRNA catabolic process;9.2542202829293e-05!GO:0008033;tRNA processing;0.000107616808875251!GO:0005788;endoplasmic reticulum lumen;0.00011570090239514!GO:0042802;identical protein binding;0.000118682864338654!GO:0016363;nuclear matrix;0.000118682864338654!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000133468908680885!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000146350863342427!GO:0050789;regulation of biological process;0.000150417185124696!GO:0043021;ribonucleoprotein binding;0.000158956939257547!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000171223707417276!GO:0008654;phospholipid biosynthetic process;0.00017295439328213!GO:0000075;cell cycle checkpoint;0.000179407237881854!GO:0016853;isomerase activity;0.000186840692031114!GO:0015980;energy derivation by oxidation of organic compounds;0.000189031094199845!GO:0031982;vesicle;0.000194273456422295!GO:0003714;transcription corepressor activity;0.000197725886461188!GO:0003729;mRNA binding;0.00019811189793701!GO:0000776;kinetochore;0.000213251424634507!GO:0006612;protein targeting to membrane;0.000238104366824062!GO:0019222;regulation of metabolic process;0.000245184110994907!GO:0005798;Golgi-associated vesicle;0.000254789855742289!GO:0051052;regulation of DNA metabolic process;0.000269576889276094!GO:0007010;cytoskeleton organization and biogenesis;0.00027607398917698!GO:0003684;damaged DNA binding;0.000291665418898016!GO:0032561;guanyl ribonucleotide binding;0.000291665418898016!GO:0019001;guanyl nucleotide binding;0.000291665418898016!GO:0031410;cytoplasmic vesicle;0.000305915562762323!GO:0005874;microtubule;0.000333123929241131!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000333911306158687!GO:0045454;cell redox homeostasis;0.000334225786062637!GO:0000059;protein import into nucleus, docking;0.000343224351959391!GO:0006352;transcription initiation;0.000359029031628002!GO:0007264;small GTPase mediated signal transduction;0.000367399003102572!GO:0043681;protein import into mitochondrion;0.000377017748493313!GO:0000323;lytic vacuole;0.000425245786141799!GO:0005764;lysosome;0.000425245786141799!GO:0045786;negative regulation of progression through cell cycle;0.000456223015524564!GO:0051252;regulation of RNA metabolic process;0.000458240810965898!GO:0031252;leading edge;0.000466684210678711!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000515396723230103!GO:0007017;microtubule-based process;0.00054015843873331!GO:0006401;RNA catabolic process;0.000564074437499207!GO:0005769;early endosome;0.000592276940387461!GO:0007059;chromosome segregation;0.000670126441845502!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000672034901030245!GO:0006626;protein targeting to mitochondrion;0.000731292393103618!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000820804156991092!GO:0007052;mitotic spindle organization and biogenesis;0.000838125557440874!GO:0033116;ER-Golgi intermediate compartment membrane;0.000887563074581673!GO:0006405;RNA export from nucleus;0.00095330211113357!GO:0030880;RNA polymerase complex;0.000960991848627462!GO:0005885;Arp2/3 protein complex;0.00102124632276843!GO:0035258;steroid hormone receptor binding;0.00105971706424061!GO:0016251;general RNA polymerase II transcription factor activity;0.00108078979637862!GO:0051920;peroxiredoxin activity;0.0010850473249279!GO:0006310;DNA recombination;0.00110746395355302!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00111190521839097!GO:0000049;tRNA binding;0.00111282617763957!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00112084391447575!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00116496819158018!GO:0045941;positive regulation of transcription;0.00117686025112182!GO:0016859;cis-trans isomerase activity;0.00118901171251429!GO:0005048;signal sequence binding;0.00119251276161226!GO:0032508;DNA duplex unwinding;0.0012996510755047!GO:0032392;DNA geometric change;0.0012996510755047!GO:0016481;negative regulation of transcription;0.00134089952047545!GO:0048487;beta-tubulin binding;0.001359370297417!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0015278496719283!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0015278496719283!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0015278496719283!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00175751516487152!GO:0006414;translational elongation;0.00188335991185831!GO:0048522;positive regulation of cellular process;0.00188900843663517!GO:0006383;transcription from RNA polymerase III promoter;0.00193723997403676!GO:0008234;cysteine-type peptidase activity;0.00196463360426251!GO:0032200;telomere organization and biogenesis;0.00197079292909303!GO:0000723;telomere maintenance;0.00197079292909303!GO:0046983;protein dimerization activity;0.0019914658211841!GO:0007088;regulation of mitosis;0.00200225672185079!GO:0051789;response to protein stimulus;0.00200462791535886!GO:0006986;response to unfolded protein;0.00200462791535886!GO:0008312;7S RNA binding;0.00205666256565568!GO:0045893;positive regulation of transcription, DNA-dependent;0.0021803389953567!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00220930140232901!GO:0000428;DNA-directed RNA polymerase complex;0.00220930140232901!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00221182538395006!GO:0019899;enzyme binding;0.00221505266291365!GO:0048500;signal recognition particle;0.00231892732800316!GO:0003678;DNA helicase activity;0.00232095572763118!GO:0031072;heat shock protein binding;0.0023352670691426!GO:0016272;prefoldin complex;0.00234042120348472!GO:0003702;RNA polymerase II transcription factor activity;0.00238487059804628!GO:0045045;secretory pathway;0.00242354594185879!GO:0004674;protein serine/threonine kinase activity;0.00252628993169168!GO:0030118;clathrin coat;0.00256651621763886!GO:0003746;translation elongation factor activity;0.00263948526353549!GO:0005684;U2-dependent spliceosome;0.00269033703428819!GO:0004527;exonuclease activity;0.00276517739937955!GO:0016491;oxidoreductase activity;0.0027788091887706!GO:0016741;transferase activity, transferring one-carbon groups;0.00289625775429133!GO:0006268;DNA unwinding during replication;0.00291272621240556!GO:0009116;nucleoside metabolic process;0.00310757590199177!GO:0051087;chaperone binding;0.00315140246036417!GO:0006611;protein export from nucleus;0.00315232515704835!GO:0030521;androgen receptor signaling pathway;0.00325365370421587!GO:0006891;intra-Golgi vesicle-mediated transport;0.00331214311556634!GO:0008168;methyltransferase activity;0.0034211568516!GO:0043488;regulation of mRNA stability;0.00352255874519707!GO:0043487;regulation of RNA stability;0.00352255874519707!GO:0046483;heterocycle metabolic process;0.00368557767691991!GO:0000096;sulfur amino acid metabolic process;0.00372463077023717!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00383017635394705!GO:0045047;protein targeting to ER;0.00383017635394705!GO:0003711;transcription elongation regulator activity;0.00390991433665625!GO:0030867;rough endoplasmic reticulum membrane;0.00391934418282345!GO:0000228;nuclear chromosome;0.00397134600628121!GO:0015631;tubulin binding;0.00416152874517811!GO:0006417;regulation of translation;0.00445102393095606!GO:0031968;organelle outer membrane;0.00461715815954417!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00467532441650281!GO:0005669;transcription factor TFIID complex;0.00474993706028854!GO:0050662;coenzyme binding;0.00495033833800983!GO:0046966;thyroid hormone receptor binding;0.00505920769464956!GO:0019867;outer membrane;0.00505920769464956!GO:0030176;integral to endoplasmic reticulum membrane;0.00509610758397419!GO:0000786;nucleosome;0.00512749461258242!GO:0046489;phosphoinositide biosynthetic process;0.00534786198361772!GO:0006520;amino acid metabolic process;0.00545754748205863!GO:0031124;mRNA 3'-end processing;0.00546046194998698!GO:0046474;glycerophospholipid biosynthetic process;0.00604432708209975!GO:0015992;proton transport;0.00616617807432268!GO:0046467;membrane lipid biosynthetic process;0.00617070517104693!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0064773614903566!GO:0015399;primary active transmembrane transporter activity;0.0064773614903566!GO:0008139;nuclear localization sequence binding;0.00656099005592214!GO:0006740;NADPH regeneration;0.00659531558697191!GO:0006098;pentose-phosphate shunt;0.00659531558697191!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00669086916242077!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00669086916242077!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00680102052014961!GO:0005876;spindle microtubule;0.00701618439370814!GO:0043596;nuclear replication fork;0.00718251187451343!GO:0000922;spindle pole;0.0072539646847005!GO:0006607;NLS-bearing substrate import into nucleus;0.0072539646847005!GO:0006091;generation of precursor metabolites and energy;0.00726069025596053!GO:0006818;hydrogen transport;0.00726415250657254!GO:0030036;actin cytoskeleton organization and biogenesis;0.00728742096122096!GO:0030663;COPI coated vesicle membrane;0.00733345633187859!GO:0030126;COPI vesicle coat;0.00733345633187859!GO:0005741;mitochondrial outer membrane;0.00735607249876484!GO:0007243;protein kinase cascade;0.00743634395184749!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00745220955381298!GO:0004518;nuclease activity;0.00770206180089669!GO:0043624;cellular protein complex disassembly;0.00789244343648774!GO:0016197;endosome transport;0.00789570554069858!GO:0006839;mitochondrial transport;0.00798683968437485!GO:0009165;nucleotide biosynthetic process;0.00800167423894244!GO:0022890;inorganic cation transmembrane transporter activity;0.00802828148445807!GO:0006275;regulation of DNA replication;0.00856789929234526!GO:0006650;glycerophospholipid metabolic process;0.00864695010413127!GO:0043022;ribosome binding;0.00879566432649249!GO:0007093;mitotic cell cycle checkpoint;0.00879917530850613!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00883844784603346!GO:0016791;phosphoric monoester hydrolase activity;0.00902544939075432!GO:0008250;oligosaccharyl transferase complex;0.00925199103360768!GO:0030131;clathrin adaptor complex;0.00925199103360768!GO:0030658;transport vesicle membrane;0.00931621334597269!GO:0030384;phosphoinositide metabolic process;0.00943943973738813!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00944185801822993!GO:0048037;cofactor binding;0.00954924166798158!GO:0019843;rRNA binding;0.00958318470677221!GO:0005832;chaperonin-containing T-complex;0.00964172115349468!GO:0031323;regulation of cellular metabolic process;0.00966528100078173!GO:0030119;AP-type membrane coat adaptor complex;0.00966528100078173!GO:0019752;carboxylic acid metabolic process;0.0102028971401179!GO:0030137;COPI-coated vesicle;0.0102388408279!GO:0000781;chromosome, telomeric region;0.0102388408279!GO:0031123;RNA 3'-end processing;0.0105738584723704!GO:0065009;regulation of a molecular function;0.0106710671666343!GO:0030133;transport vesicle;0.0109243973061759!GO:0000209;protein polyubiquitination;0.0110359952611834!GO:0007004;telomere maintenance via telomerase;0.0111268366844428!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0113321394721212!GO:0032984;macromolecular complex disassembly;0.0115142796051408!GO:0009112;nucleobase metabolic process;0.0116709361362383!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0118575849572695!GO:0006082;organic acid metabolic process;0.0120640175626057!GO:0005758;mitochondrial intermembrane space;0.0120836968394363!GO:0006376;mRNA splice site selection;0.0121120107558024!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0121120107558024!GO:0016584;nucleosome positioning;0.0121557675333338!GO:0031625;ubiquitin protein ligase binding;0.0121557675333338!GO:0051053;negative regulation of DNA metabolic process;0.0121557675333338!GO:0003725;double-stranded RNA binding;0.0123132000502105!GO:0000725;recombinational repair;0.0123228934157573!GO:0000724;double-strand break repair via homologous recombination;0.0123228934157573!GO:0000792;heterochromatin;0.0123627344334929!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0124987852527282!GO:0006289;nucleotide-excision repair;0.0129838194236726!GO:0030132;clathrin coat of coated pit;0.0132143202058065!GO:0009451;RNA modification;0.0136065885089553!GO:0006950;response to stress;0.0138677227899134!GO:0006284;base-excision repair;0.0139592298997118!GO:0031970;organelle envelope lumen;0.0141629972918823!GO:0005637;nuclear inner membrane;0.0141666864635943!GO:0006506;GPI anchor biosynthetic process;0.0145554038812019!GO:0016126;sterol biosynthetic process;0.0147668898392964!GO:0030518;steroid hormone receptor signaling pathway;0.0149308371822697!GO:0051128;regulation of cellular component organization and biogenesis;0.0154359526946684!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.015440473680509!GO:0008632;apoptotic program;0.015797457641349!GO:0007006;mitochondrial membrane organization and biogenesis;0.0158221582026679!GO:0006979;response to oxidative stress;0.0159115992524129!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0159775603870486!GO:0043241;protein complex disassembly;0.0159997386213192!GO:0008637;apoptotic mitochondrial changes;0.0161774946893606!GO:0019783;small conjugating protein-specific protease activity;0.0161975836535981!GO:0050681;androgen receptor binding;0.0164488013366631!GO:0008097;5S rRNA binding;0.0166221105432698!GO:0006350;transcription;0.0167027903774356!GO:0031326;regulation of cellular biosynthetic process;0.0168046273389941!GO:0008652;amino acid biosynthetic process;0.0169095448168933!GO:0000339;RNA cap binding;0.0169439062182634!GO:0005869;dynactin complex;0.0171347688511219!GO:0031529;ruffle organization and biogenesis;0.0172900523567545!GO:0006505;GPI anchor metabolic process;0.0176279925850206!GO:0042770;DNA damage response, signal transduction;0.0180354257039904!GO:0051656;establishment of organelle localization;0.0181816286538547!GO:0005856;cytoskeleton;0.0183514602505007!GO:0008180;signalosome;0.0186051056645705!GO:0005791;rough endoplasmic reticulum;0.0186321670284809!GO:0051287;NAD binding;0.0187225087833912!GO:0004576;oligosaccharyl transferase activity;0.0191060839837332!GO:0042393;histone binding;0.0191213406104862!GO:0030134;ER to Golgi transport vesicle;0.0191314827642217!GO:0001726;ruffle;0.0193366386609798!GO:0004721;phosphoprotein phosphatase activity;0.0193498452172459!GO:0006378;mRNA polyadenylation;0.0198386601145271!GO:0008022;protein C-terminus binding;0.0199531058740163!GO:0030503;regulation of cell redox homeostasis;0.0200686461585279!GO:0000082;G1/S transition of mitotic cell cycle;0.0204880265486977!GO:0044454;nuclear chromosome part;0.0208456672364448!GO:0007265;Ras protein signal transduction;0.0209441693208117!GO:0009303;rRNA transcription;0.0218164387605984!GO:0008538;proteasome activator activity;0.0220353609602318!GO:0031570;DNA integrity checkpoint;0.0222386618835144!GO:0045892;negative regulation of transcription, DNA-dependent;0.0222435091099682!GO:0006270;DNA replication initiation;0.0224889824895024!GO:0043601;nuclear replisome;0.0225611681670643!GO:0030894;replisome;0.0225611681670643!GO:0051540;metal cluster binding;0.0226114324157213!GO:0051536;iron-sulfur cluster binding;0.0226114324157213!GO:0006278;RNA-dependent DNA replication;0.0226915168664743!GO:0030660;Golgi-associated vesicle membrane;0.0231299918107716!GO:0004843;ubiquitin-specific protease activity;0.0232522700445987!GO:0043189;H4/H2A histone acetyltransferase complex;0.0236118813516799!GO:0006767;water-soluble vitamin metabolic process;0.0241542213714434!GO:0016044;membrane organization and biogenesis;0.02431572417214!GO:0006672;ceramide metabolic process;0.0248003465898965!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0256105220254315!GO:0017166;vinculin binding;0.0258016720022526!GO:0017134;fibroblast growth factor binding;0.0258464773976502!GO:0033673;negative regulation of kinase activity;0.0260855248639146!GO:0006469;negative regulation of protein kinase activity;0.0260855248639146!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0261577301339643!GO:0006338;chromatin remodeling;0.0267119430537047!GO:0009889;regulation of biosynthetic process;0.0268879376768905!GO:0006595;polyamine metabolic process;0.0269953773281158!GO:0030127;COPII vesicle coat;0.0272654067643339!GO:0012507;ER to Golgi transport vesicle membrane;0.0272654067643339!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0273009908838771!GO:0005875;microtubule associated complex;0.0276190391846055!GO:0006739;NADP metabolic process;0.0279905183643114!GO:0016311;dephosphorylation;0.0281399576829571!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0284600763162219!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0284600763162219!GO:0008629;induction of apoptosis by intracellular signals;0.0288900394488588!GO:0000123;histone acetyltransferase complex;0.0288984542962435!GO:0005732;small nucleolar ribonucleoprotein complex;0.0288984542962435!GO:0043492;ATPase activity, coupled to movement of substances;0.0290610276683264!GO:0035267;NuA4 histone acetyltransferase complex;0.0297934092637534!GO:0031902;late endosome membrane;0.0299016655900412!GO:0006354;RNA elongation;0.030300799779111!GO:0022406;membrane docking;0.030406807777411!GO:0048278;vesicle docking;0.030406807777411!GO:0006769;nicotinamide metabolic process;0.0307774153042642!GO:0008408;3'-5' exonuclease activity;0.0310186353298622!GO:0006984;ER-nuclear signaling pathway;0.0314303050465419!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0320399021652645!GO:0004197;cysteine-type endopeptidase activity;0.0324744596271638!GO:0016407;acetyltransferase activity;0.0325813985994529!GO:0008156;negative regulation of DNA replication;0.0325813985994529!GO:0008092;cytoskeletal protein binding;0.0329724425800514!GO:0008361;regulation of cell size;0.0337005820437742!GO:0001889;liver development;0.0337054195517781!GO:0051348;negative regulation of transferase activity;0.0341222795925027!GO:0006400;tRNA modification;0.0341450622188081!GO:0006406;mRNA export from nucleus;0.034317004037274!GO:0019206;nucleoside kinase activity;0.034317004037274!GO:0004221;ubiquitin thiolesterase activity;0.034317004037274!GO:0006144;purine base metabolic process;0.0343289502990176!GO:0006695;cholesterol biosynthetic process;0.0347104256191478!GO:0031901;early endosome membrane;0.0360763094947762!GO:0006497;protein amino acid lipidation;0.0367741988383397!GO:0043065;positive regulation of apoptosis;0.0368508070660384!GO:0009081;branched chain family amino acid metabolic process;0.036999907265739!GO:0005784;translocon complex;0.0370491961757544!GO:0000726;non-recombinational repair;0.0371851635882935!GO:0000178;exosome (RNase complex);0.0373048259602702!GO:0043284;biopolymer biosynthetic process;0.0373048259602702!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0379672529831705!GO:0030029;actin filament-based process;0.0380481416739839!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0383455757829834!GO:0040029;regulation of gene expression, epigenetic;0.0384278353751477!GO:0000819;sister chromatid segregation;0.0388305387775523!GO:0008426;protein kinase C inhibitor activity;0.0388305387775523!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0403718458725362!GO:0005938;cell cortex;0.0408199672815983!GO:0004003;ATP-dependent DNA helicase activity;0.0412545759638914!GO:0009119;ribonucleoside metabolic process;0.0414984617742343!GO:0006733;oxidoreduction coenzyme metabolic process;0.041563352759147!GO:0000118;histone deacetylase complex;0.0417718613112343!GO:0000790;nuclear chromatin;0.0418352086213487!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0419762751885703!GO:0015002;heme-copper terminal oxidase activity;0.0419762751885703!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0419762751885703!GO:0004129;cytochrome-c oxidase activity;0.0419762751885703!GO:0065007;biological regulation;0.0431458788873753!GO:0006904;vesicle docking during exocytosis;0.0435192073487138!GO:0050811;GABA receptor binding;0.0435787195805937!GO:0042769;DNA damage response, detection of DNA damage;0.0440531680104735!GO:0018196;peptidyl-asparagine modification;0.0441070004604292!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0441070004604292!GO:0043068;positive regulation of programmed cell death;0.0442099965266085!GO:0004532;exoribonuclease activity;0.0442099965266085!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0442099965266085!GO:0022411;cellular component disassembly;0.0457158664876366!GO:0006360;transcription from RNA polymerase I promoter;0.0457958028673813!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0458255374027813!GO:0046519;sphingoid metabolic process;0.0458903432712239!GO:0016790;thiolester hydrolase activity;0.04593810582187!GO:0000097;sulfur amino acid biosynthetic process;0.0460101947861551!GO:0006519;amino acid and derivative metabolic process;0.0467055114586579!GO:0008610;lipid biosynthetic process;0.0469117348438341!GO:0004300;enoyl-CoA hydratase activity;0.0477256833251432!GO:0006643;membrane lipid metabolic process;0.0478156629452181!GO:0000070;mitotic sister chromatid segregation;0.0482313644407159!GO:0030027;lamellipodium;0.0482910743956428!GO:0031396;regulation of protein ubiquitination;0.0486831487858997!GO:0046822;regulation of nucleocytoplasmic transport;0.0488985628015836!GO:0004239;methionyl aminopeptidase activity;0.0495600430628574!GO:0030125;clathrin vesicle coat;0.0496684597591658!GO:0030665;clathrin coated vesicle membrane;0.0496684597591658!GO:0001558;regulation of cell growth;0.0499303725079336
|sample_id=10438
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=pancreas
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10438-106E6;search_select_hide=table117:FF:10438-106E6
}}
}}

Latest revision as of 14:02, 3 June 2020

Name:ductal cell carcinoma cell line:KLM-1
Species:Human (Homo sapiens)
Library ID:CNhs11100
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepancreas
dev stageNA
sexunknown
ageNA
cell typeduct cell
cell lineKLM-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005289
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11100 CAGE DRX007868 DRR008740
Accession ID Hg19

Library idBAMCTSS
CNhs11100 DRZ000165 DRZ001550
Accession ID Hg38

Library idBAMCTSS
CNhs11100 DRZ011515 DRZ012900
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.00203
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.436
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.082
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.103
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0862
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.165
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.655
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0776
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0776
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.382
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11100

Jaspar motifP-value
MA0002.20.00126
MA0003.10.868
MA0004.10.33
MA0006.10.584
MA0007.10.18
MA0009.10.128
MA0014.10.0134
MA0017.10.678
MA0018.28.65936e-4
MA0019.10.746
MA0024.10.012
MA0025.10.0664
MA0027.10.917
MA0028.15.99776e-5
MA0029.10.0421
MA0030.10.0748
MA0031.10.0146
MA0035.20.0579
MA0038.10.00795
MA0039.22.0821e-4
MA0040.10.362
MA0041.10.904
MA0042.10.65
MA0043.16.68776e-4
MA0046.10.757
MA0047.20.00184
MA0048.10.933
MA0050.10.35
MA0051.10.303
MA0052.10.44
MA0055.10.0107
MA0057.10.502
MA0058.10.553
MA0059.10.982
MA0060.14.18085e-7
MA0061.10.00115
MA0062.25.08337e-6
MA0065.20.377
MA0066.10.0723
MA0067.10.864
MA0068.10.858
MA0069.10.858
MA0070.10.473
MA0071.10.256
MA0072.10.908
MA0073.10.884
MA0074.10.866
MA0076.11.14742e-5
MA0077.10.0802
MA0078.10.384
MA0079.20.199
MA0080.20.00245
MA0081.10.0673
MA0083.10.884
MA0084.10.183
MA0087.10.803
MA0088.10.449
MA0090.10.022
MA0091.11.64925e-4
MA0092.10.409
MA0093.10.35
MA0099.25.54627e-5
MA0100.10.255
MA0101.10.0169
MA0102.20.863
MA0103.11.04751e-7
MA0104.20.185
MA0105.11.6475e-6
MA0106.10.00533
MA0107.10.00253
MA0108.20.0833
MA0111.10.413
MA0112.20.137
MA0113.10.0423
MA0114.10.481
MA0115.10.191
MA0116.10.0232
MA0117.10.987
MA0119.10.981
MA0122.10.797
MA0124.10.887
MA0125.10.0297
MA0131.10.349
MA0135.10.486
MA0136.10.629
MA0137.20.603
MA0138.20.132
MA0139.10.117
MA0140.10.174
MA0141.10.245
MA0142.10.0376
MA0143.10.812
MA0144.10.505
MA0145.10.196
MA0146.10.994
MA0147.10.111
MA0148.10.00498
MA0149.10.0843
MA0150.10.304
MA0152.10.461
MA0153.10.632
MA0154.10.0326
MA0155.10.278
MA0156.10.288
MA0157.10.264
MA0159.10.159
MA0160.10.885
MA0162.10.543
MA0163.10.00206
MA0164.10.609
MA0258.10.0875
MA0259.10.227



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11100

Novel motifP-value
10.984
100.692
1000.388
1010.96
1020.261
1030.431
1040.52
1050.366
1060.0507
1070.341
1080.976
1090.21
110.146
1100.504
1110.314
1120.104
1130.116
1140.0603
1150.313
1160.0685
1170.892
1180.613
1190.523
120.898
1200.252
1210.903
1220.254
1230.578
1240.928
1250.597
1260.807
1270.649
1280.0139
1290.386
130.105
1300.443
1310.145
1320.769
1330.0176
1340.15
1350.0831
1360.0228
1370.255
1380.708
1390.0566
140.895
1400.497
1410.429
1420.988
1430.00951
1440.119
1450.183
1460.701
1470.559
1480.571
1490.112
150.905
1500.435
1510.723
1520.288
1530.948
1540.443
1550.759
1560.636
1570.958
1580.855
1590.86
160.887
1600.352
1610.997
1620.771
1630.713
1640.315
1650.974
1660.0872
1670.495
1680.8
1690.833
170.464
180.313
190.0665
20.814
200.592
210.353
220.468
230.133
240.515
250.306
260.582
270.578
280.297
290.538
30.219
300.247
310.0747
321.14782e-4
330.247
340.435
350.0758
360.967
370.216
380.969
390.634
40.418
400.546
410.145
420.978
430.0475
440.131
450.804
460.369
470.763
480.978
490.107
50.497
500.264
510.381
520.94
530.918
540.527
550.751
560.968
570.589
580.712
590.302
60.579
600.833
610.719
620.531
630.613
640.655
650.191
660.0087
670.923
680.0129
690.92
70.171
700.185
710.6
720.449
730.172
740.0145
750.778
760.837
770.661
780.473
798.96015e-4
80.26
800.569
810.029
820.00574
830.612
840.676
850.0151
860.391
870.0659
880.464
890.334
90.249
900.556
910.19
920.109
930.845
940.0698
950.973
960.154
970.193
980.329
990.812



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11100


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000083 (epithelial cell of pancreas)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)
1793 (pancreatic cancer)
4074 (pancreas adenocarcinoma)
4905 (pancreatic carcinoma)
3498 (pancreatic ductal adenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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