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{{f5samples
{{f5samples
|id=FF:10791-110H8
|DRA_sample_Accession=CAGE@SAMD00005555
|name=keratoacanthoma cell line:HKA-1
|accession_numbers=CAGE;DRX007910;DRR008782;DRZ000207;DRZ001592;DRZ011557;DRZ012942
|sample_id=10791
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000014,UBERON:0002097,UBERON:0002199,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|rna_tube_id=110H8
|rna_box=110
|rna_position=H8
|sample_cell_lot=
|sample_cell_catalog=jcrb1017
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=skin
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=77
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=2.16
|rna_od260/280=2.13
|sample_cell_type=unclassifiable
|sample_cell_line=HKA-1
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=keratoacanthoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=31.98726
|rna_concentration=0.68058
|sample_note=
|profile_hcage=CNhs11880,LSID830,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000014,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000480,UBERON:0001062,UBERON:0002097,UBERON:0002199,UBERON:0002416,UBERON:0003102
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3451,DOID:3151,DOID:4159,DOID:0060122,DOID:3149
|ancestors_in_disease_facet=DOID:0050686,DOID:0060122,DOID:14566,DOID:162,DOID:3149,DOID:3151,DOID:3451,DOID:4,DOID:4159
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001
|sample_description=
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.33!212.33!SOX15;;chr6:1312325..1312340,+!p1@FOXQ1!2.27!291.49!FOXQ1;;chr3:189507432..189507459,+!p1@TP63!2.10!123.78!TP63;;chr4:57547454..57547469,-!p1@HOPX!1.89!76.14!HOPX;;chr5:2751762..2751784,-!p1@IRX2!1.81!63.40!IRX2;;chr1:209979467..209979494,-!p1@IRF6!1.79!68.09!IRF6;;chr15:101069113..101069169,-!p1@CERS3!1.78!59.71!CERS3;;chr17:48072574..48072597,-!p1@DLX3!1.78!59.37!DLX3;;chr1:209979411..209979433,-!p2@IRF6!1.74!53.33!IRF6;;chr22:19748231..19748317,+!p1@TBX1!1.74!53.33!TBX1;;chr12:54785054..54785072,-!p4@ZNF385A!1.69!54.00!ZNF385A;;chr13:73633131..73633149,+!p1@KLF5!1.65!443.78!KLF5;;chr12:54785074..54785122,-!p2@ZNF385A!1.65!65.41!ZNF385A;;chr17:7492684..7492778,-!p2@SOX15!1.61!80.84!SOX15;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.61!39.58!ZBED1;;chr11:34642612..34642646,+!p1@EHF!1.58!37.23!EHF;;chr5:134369905..134369972,-!p1@PITX1!1.55!51.66!PITX1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.55!34.89!TFCP2L1;;chr9:100615499..100615519,+!p1@FOXE1!1.45!27.17!FOXE1;;chr17:80797886..80797906,-!p1@ZNF750!1.41!24.82!ZNF750;;chr10:8095593..8095625,+!p3@GATA3!1.39!27.84!GATA3;;chr1:6479968..6479986,-!p1@HES2!1.36!22.14!HES2;;chr8:102504651..102504683,+!p1@GRHL2!1.35!21.47!GRHL2;;chr1:201979743..201979762,+!p1@ELF3!1.35!21.13!ELF3;;chr2:172967621..172967637,-!p1@DLX2!1.33!54.34!DLX2;;chr1:24645832..24645853,+!p1@GRHL3!1.33!20.46!GRHL3;;chr20:55204351..55204377,+!p1@TFAP2C!1.32!25.49!TFAP2C;;chr15:83953397..83953425,-!p1@BNC1!1.29!21.13!BNC1;;chr17:26833339..26833378,+!p1@FOXN1!1.29!18.45!FOXN1;;chr12:54332608..54332636,+!p1@HOXC13!1.29!18.45!HOXC13;;chr5:134369879..134369898,-!p2@PITX1!1.29!18.45!PITX1;;chr1:201979703..201979721,+!p2@ELF3!1.27!17.44!ELF3;;chr20:39317868..39317884,-!p1@MAFB!1.26!197.24!MAFB;;chr6:10415276..10415341,-!p2@TFAP2A!1.26!20.80!TFAP2A;;chr12:54332652..54332671,+!p2@HOXC13!1.26!17.11!HOXC13;;chr6:10412600..10412637,-!p1@TFAP2A!1.24!26.83!TFAP2A;;chr5:1887070..1887114,-!p1@IRX4!1.23!16.10!IRX4;;chr5:3595934..3595957,+!p2@IRX1!1.23!16.10!IRX1;;chr17:46687959..46688007,-!p2@HOXB7!1.16!18.45!HOXB7;;chr1:24645921..24645973,+!p2@GRHL3!1.16!13.42!GRHL3;;chr12:54332687..54332701,+!p3@HOXC13!1.13!12.41!HOXC13;;chr6:1389789..1389821,+!p1@FOXF2!1.09!15.77!FOXF2;;chr7:96654133..96654150,-!p1@DLX5!1.08!11.07!DLX5;;chr5:3595977..3595999,+!p1@IRX1!1.07!10.73!IRX1;;chr12:53625966..53626012,-!p2@RARG!1.06!28.18!RARG;;chr20:50721803..50721857,-!p2@ZFP64!1.06!16.44!ZFP64;;chr5:1887052..1887065,-!p2@IRX4!1.06!10.40!IRX4;;chr5:2751785..2751808,-!p2@IRX2!1.06!10.40!IRX2;;chr13:73636252..73636307,+!p2@KLF5!1.03!11.40!KLF5;;chr18:45935720..45935772,-!p1@ZBTB7C!1.03!9.73!ZBTB7C;;chr9:137218281..137218340,+!p1@RXRA!1.02!271.03!RXRA;;chr8:102504979..102505010,+!p2@GRHL2!1.00!9.06!GRHL2;;chr6:1389989..1390019,+!p2@FOXF2!0.99!8.72!FOXF2;;chr8:10588010..10588030,-!p1@SOX7!0.99!8.72!SOX7;;chr2:119605214..119605230,-!p1@EN1!0.99!8.72!EN1;;chr11:65554528..65554546,+!p1@OVOL1!0.99!8.72!OVOL1;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.39!TFAP2A;;chr6:1312155..1312187,+!p2@FOXQ1!0.97!8.39!FOXQ1;;chr6:28321909..28321965,-!p3@ZNF323!0.94!7.71!ZNF323;;chr1:24646263..24646277,+!p4@GRHL3!0.94!7.71!GRHL3;;chr2:176994408..176994492,+!p1@HOXD8!0.94!7.71!HOXD8;;chr4:111544219..111544240,-!p1@PITX2!0.94!7.71!PITX2;;chr9:137218341..137218361,+!p2@RXRA!0.93!32.20!RXRA;;chrX:129244655..129244697,-!p4@ELF4!0.93!13.75!ELF4;;chr5:3595961..3595975,+!p3@IRX1!0.92!7.38!IRX1;;chr6:10419768..10419819,-!p6@TFAP2A!0.92!7.38!TFAP2A;;chr12:54332675..54332686,+!p4@HOXC13!0.92!7.38!HOXC13;;chr13:28543285..28543314,-!p2@CDX2!0.92!7.38!CDX2;;chr9:100616439..100616476,+!p3@FOXE1!0.91!7.04!FOXE1;;chr3:189507460..189507471,+!p3@TP63!0.91!7.04!TP63;;chr1:209979449..209979460,-!p3@IRF6!0.91!7.04!IRF6;;chr20:18038521..18038571,-!p1@OVOL2!0.91!7.04!OVOL2;;chr16:79634595..79634620,-!p2@MAF!0.88!12.41!MAF;;chr8:123875520..123875536,+!p7@ZHX2!0.87!6.37!ZHX2;;chr13:73636516..73636532,+!p3@KLF5!0.85!7.04!KLF5;;chr2:172949484..172949522,+!p1@DLX1!0.85!6.04!DLX1;;chr3:169381420..169381535,-!p1@MECOM!0.84!7.04!MECOM;;chr19:33793430..33793447,-!p1@CEBPA!0.83!25.83!CEBPA;;chr1:153939955..153940009,+!p2@CREB3L4!0.83!14.09!CREB3L4;;chr8:123875175..123875188,+!p22@ZHX2!0.83!5.70!ZHX2;;chr10:126138597..126138612,-!p1@NKX1-2!0.83!5.70!NKX1-2;;chr14:37131058..37131139,+!p1@PAX9!0.83!5.70!PAX9;;chr14:38064429..38064486,-!p1@FOXA1!0.83!5.70!FOXA1;;chr20:46130619..46130664,+!p1@NCOA3!0.82!161.68!NCOA3;;chr1:164528410..164528428,+!p1@PBX1!0.82!45.62!PBX1;;chr7:27135591..27135658,-!p1@HOXA1!0.80!10.73!HOXA1;;chr9:129376201..129376225,+!p1@LMX1B!0.80!5.37!LMX1B;;chr2:176969179..176969226,+!p2@HOXD11!0.80!5.37!HOXD11;;chr2:176972047..176972063,+!p7@HOXD11!0.78!5.03!HOXD11;;chr13:73636621..73636647,+!p4@KLF5!0.78!5.03!KLF5;;chr1:10856665..10856683,-!p4@CASZ1!0.78!5.03!CASZ1;;chr1:42501569..42501614,-!p1@HIVEP3!0.77!10.73!HIVEP3;;chr15:31619326..31619390,+!p2@KLF13!0.76!60.38!KLF13;;chr19:45908292..45908374,-!p1@PPP1R13L!0.76!46.96!PPP1R13L;;chr5:174151553..174151610,+!p1@MSX2!0.76!8.39!MSX2;;chr2:176971685..176971700,+!p6@HOXD11!0.76!4.70!HOXD11;;chr11:2292226..2292270,-!p1@ASCL2!0.76!4.70!ASCL2;;chr19:45971246..45971265,+!p1@FOSB!0.75!94.93!FOSB;;chr20:46130672..46130686,+!p2@NCOA3!0.75!22.81!NCOA3;;chr16:79633894..79633954,-!p3@MAF!0.75!9.39!MAF;;chr1:10754477..10754517,-!p1@CASZ1!0.75!8.05!CASZ1;;chr16:67881588..67881612,-!p2@CENPT!0.74!6.37!CENPT;;chr10:48355030..48355090,+!p1@ZNF488!0.74!6.04!ZNF488;;chr13:41240717..41240735,-!p2@FOXO1!0.73!33.21!FOXO1;;chr5:137804484..137804498,+!p2@EGR1!0.73!19.12!EGR1;;chr5:174151612..174151633,+!p2@MSX2!0.73!4.36!MSX2;;chr20:18038486..18038520,-!p2@OVOL2!0.73!4.36!OVOL2;;chr3:189507523..189507535,+!p5@TP63!0.73!4.36!TP63;;chr4:38665810..38665827,+!p1@KLF3!0.71!68.43!KLF3;;chr16:79634624..79634642,-!p1@MAF!0.71!18.11!MAF;;chr17:41277372..41277418,-!p1@BRCA1!0.71!16.44!BRCA1;;chr9:137218362..137218385,+!p4@RXRA!0.71!12.08!RXRA;;chr2:172967323..172967336,-!p4@DLX2!0.70!4.03!DLX2;;chr5:134369973..134369984,-!p3@PITX1!0.70!4.03!PITX1;;chr6:10413188..10413249,-!p7@TFAP2A!0.70!4.03!TFAP2A;;chr11:34642656..34642667,+!p2@EHF!0.70!4.03!EHF;;chr1:164528445..164528459,+!p2@PBX1!0.69!13.42!PBX1;;chrX:107018969..107019024,-!p6@TSC22D3!0.69!5.70!TSC22D3;;chr20:30193083..30193098,+!p1@ID1!0.68!352.88!ID1;;chr1:202777535..202777556,-!p1@KDM5B!0.68!146.25!KDM5B;;chr2:46524897..46524911,+!p2@EPAS1!0.68!11.74!EPAS1;;chr18:42260059..42260132,+!p1@SETBP1!0.68!6.71!SETBP1;;chr10:77161133..77161176,-!p3@ZNF503!0.67!8.72!ZNF503;;chr10:64018918..64018936,+!p2@ZNF365!0.67!3.69!ZNF365;;chr12:54380036..54380091,+!p4@HOXC10!0.67!3.69!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.69!HOXC9;;chr13:73636310..73636330,+!p5@KLF5!0.67!3.69!KLF5;;chr14:38064307..38064323,-!p3@FOXA1!0.67!3.69!FOXA1;;chr1:10856639..10856662,-!p2@CASZ1!0.67!3.69!CASZ1;;chr8:123875131..123875140,+!p25@ZHX2!0.67!3.69!ZHX2;;chr17:48045917..48045977,+!p1@DLX4!0.67!3.69!DLX4;;chr2:176969228..176969260,+!p1@HOXD11!0.67!3.69!HOXD11;;chr2:176972000..176972025,+!p4@HOXD11!0.67!3.69!HOXD11;;chr20:42295745..42295765,+!p1@MYBL2!0.66!68.76!MYBL2;;chr4:38665866..38665878,+!p4@KLF3!0.66!13.08!KLF3;;chr17:61919985..61920012,-!p3@SMARCD2!0.66!9.73!SMARCD2;;chr2:70142232..70142251,+!p1@MXD1!0.65!22.47!MXD1;;chr1:158979792..158979814,+!p2@IFI16!0.64!38.24!IFI16;;chr20:46130846..46130869,+!p5@NCOA3!0.64!3.69!NCOA3;;chr2:172950227..172950249,+!p2@DLX1!0.64!3.35!DLX1;;chr12:54378923..54378966,+!p1@HOXC10!0.64!3.35!HOXC10;;chr13:79177703..79177729,-!p2@POU4F1!0.64!3.35!POU4F1;;chr15:83953373..83953386,-!p2@BNC1!0.64!3.35!BNC1;;chr17:26833250..26833262,+!p2@FOXN1!0.64!3.35!FOXN1;;chr17:46682321..46682362,-!p1@HOXB6!0.64!3.35!HOXB6;;chr6:28321971..28321995,-!p1@ZNF323!0.64!3.35!ZNF323;;chr8:123875147..123875159,+!p26@ZHX2!0.64!3.35!ZHX2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.62!272.71!TAX1BP3;;chr6:15246200..15246214,+!p2@JARID2!0.62!10.06!JARID2;;chr19:17356189..17356221,-!p2@NR2F6!0.62!5.70!NR2F6;;chr1:157108130..157108173,-!p1@ETV3!0.61!26.50!ETV3;;chr15:31619570..31619615,+!p6@KLF13!0.61!5.70!KLF13;;chr17:61920023..61920110,-!p1@SMARCD2!0.60!50.32!SMARCD2;;chr13:41593425..41593480,-!p1@ELF1!0.60!22.81!ELF1;;chr13:27998854..27998866,+!p3@GTF3A!0.60!6.71!GTF3A;;chr10:64134120..64134183,+!p1@ZNF365!0.60!3.69!ZNF365;;chr11:65554563..65554576,+!p2@OVOL1!0.60!3.02!OVOL1;;chr12:53625846..53625861,-!p6@RARG!0.60!3.02!RARG;;chr13:73636334..73636351,+!p6@KLF5!0.60!3.02!KLF5;;chr1:10856694..10856715,-!p3@CASZ1!0.60!3.02!CASZ1;;chr1:42384532..42384603,-!p2@HIVEP3!0.60!3.02!HIVEP3;;chr2:172967276..172967296,-!p3@DLX2!0.60!3.02!DLX2;;chr2:172967353..172967365,-!p5@DLX2!0.60!3.02!DLX2;;chr15:101069186..101069200,-!p4@CERS3!0.60!3.02!CERS3;;chr7:114055245..114055258,+!p7@FOXP2!0.60!3.02!FOXP2;;chr1:204042723..204042784,+!p3@SOX13!0.59!5.37!SOX13;;chr8:37553292..37553317,+!p1@ZNF703!0.58!81.85!ZNF703;;chr1:23857698..23857733,-!p1@E2F2!0.58!5.70!E2F2;;chr16:29817841..29817865,+!p1@MAZ!0.57!72.45!MAZ;;chrX:129244454..129244488,-!p1@ELF4!0.57!23.82!ELF4;;chr5:43120995..43121052,+!p1@ZNF131!0.57!16.77!ZNF131;;chr19:22235279..22235301,+!p1@ZNF257!0.57!5.70!ZNF257;;chr18:53089493..53089517,-!p15@TCF4!0.57!2.68!TCF4;;chr4:95174454..95174465,+!p8@SMARCAD1!0.57!2.68!SMARCAD1;;chr5:134369643..134369675,-!p4@PITX1!0.57!2.68!PITX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.57!2.68!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!0.57!2.68!TFAP2A;;chr6:28048343..28048354,+!p1@ZNF165!0.57!2.68!ZNF165;;chr8:11561684..11561751,+!p1@GATA4!0.57!2.68!GATA4;;chr11:2291814..2291825,-!p2@ASCL2!0.57!2.68!ASCL2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.57!2.68!HOXC5;;chr14:36989940..36989957,-!p2@NKX2-1!0.57!2.68!NKX2-1;;chr2:119604456..119604501,-!p2@EN1!0.57!2.68!EN1;;chr3:138665937..138665968,-!p1@FOXL2!0.57!2.68!FOXL2;;chr4:111544254..111544270,-!p3@PITX2!0.57!2.68!PITX2;;chr17:17740287..17740307,-!p1@SREBF1!0.56!85.87!SREBF1;;chr8:49833948..49833973,-!p2@SNAI2!0.56!20.46!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NF131!0.16!1.68!ZNF131;;chr7:148844581..148844606,+!p2@ZNF398!0.16!1.34!ZNF398;;chr14:64970401..64970423,-!p7@ZBTB25!0.16!1.34!ZBTB25;;chr9:94186085..94186096,-!p3@NFIL3!0.16!1.34!NFIL3;;chr15:96875657..96875760,+!p14@NR2F2!0.16!1.34!NR2F2;;chr15:74833547..74833567,+!p2@ARID3B!0.16!1.01!ARID3B;;chr18:19749386..19749404,+!p2@GATA6!0.16!1.01!GATA6;;chr10:77161650..77161661,-!p4@ZNF503!0.16!1.01!ZNF503;;chr1:214161272..214161322,+!p1@PROX1!0.16!1.01!PROX1;;chr1:41157671..41157695,+!p6@NFYC!0.16!1.01!NFYC;;chr1:61924375..61924380,+!p6@NFIA!0.16!1.01!NFIA;;chr8:128750983..128751021,+!p11@MYC!0.16!1.01!MYC;;chr5:137804357..137804390,+!p4@EGR1!0.16!0.67!EGR1;;chr7:106826626..106826630,+!p3@HBP1!0.16!0.67!HBP1;;chr7:148844498..148844507,+!p6@ZNF398!0.16!0.67!ZNF398;;chr7:4721998..4722013,+!p3@FOXK1!0.16!0.67!FOXK1;;chr9:110250697..110250738,-!p2@KLF4!0.16!0.67!KLF4;;chr20:44600184..44600198,-!p6@ZNF335!0.16!0.67!ZNF335;;chr11:19263160..19263176,-!p1@E2F8!0.16!0.67!E2F8;;chr14:45722261..45722272,-!p5@MIS18BP1!0.16!0.67!MIS18BP1;;chr2:28616312..28616315,+!p8@FOSL2!0.16!0.67!FOSL2;;chr3:18466660..18466676,-!p5@SATB1!0.16!0.67!SATB1;;chr3:5022174..5022207,+!p8@BHLHE40!0.16!0.67!BHLHE40;;chr14:105886150..105886224,+!p1@MTA1!0.15!43.27!MTA1;;chr3:23986762..23986821,+!p1@NR1D2!0.15!19.12!NR1D2;;chr18:48494379..48494426,+!p1@ELAC1,p2@SMAD4!0.15!13.75!SMAD4;;chr16:29817617..29817664,+!p4@MAZ!0.15!12.75!MAZ;;chr12:57916466..57916523,+!p2@MBD6!0.15!10.73!MBD6;;chr6:21597765..21597779,+!p2@SOX4!0.15!9.73!SOX4;;chr6:108880956..108881011,+!p1@FOXO3!0.15!7.71!FOXO3;;chr11:46722560..46722595,+!p1@ZNF408!0.15!6.04!ZNF408;;chr1:151043216..151043256,+!p1@GABPB2!0.15!3.69!GABPB2;;chr8:37963407..37963454,+!p2@ASH2L!0.15!3.02!ASH2L;;chr10:76586311..76586341,+!p2@KAT6B!0.15!2.68!KAT6B;;chr1:164528340..164528379,+!p4@PBX1!0.15!2.35!PBX1;;chr3:107241882..107241904,+!p2@BBX!0.15!2.35!BBX;;chr17:46655730..46655791,-!p1@HOXB4!0.15!2.35!HOXB4;;chr18:3450293..3450304,+!p4@TGIF1!0.15!2.35!TGIF1;;chr17:38256932..38256965,-!p4@NR1D1!0.15!2.01!NR1D1;;chr6:7108855..7108903,+!p5@RREB1!0.15!2.01!RREB1;;chr6:21597514..21597578,+!p4@SOX4!0.15!1.34!SOX4;;chr15:67358146..67358157,+!p7@SMAD3!0.15!1.34!SMAD3;;chr17:7388010..7388017,-!p5@ZBTB4!0.15!1.34!ZBTB4;;chr1:235383681..235383700,-!p2@ARID4B!0.15!1.34!ARID4B;;chr1:91487629..91487640,-!p7@ZNF644!0.15!1.34!ZNF644;;chr20:50808252..50808264,-!p4@ZFP64!0.15!1.34!ZFP64;;chr12:6798523..6798548,-!p6@ZNF384!0.15!1.34!ZNF384;;chr3:114866124..114866149,-!p5@ZBTB20!0.15!1.34!ZBTB20;;chr6:168227611..168227624,+!p2@MLLT4!0.15!1.01!MLLT4;;chr15:96869292..96869320,+!p15@NR2F2!0.15!1.01!NR2F2;;chr16:54320158..54320200,-!p5@IRX3!0.15!1.01!IRX3;;chr18:74207186..74207204,-!p3@ZNF516!0.15!1.01!ZNF516;;chr15:77713095..77713113,+!p5@HMG20A!0.15!0.67!HMG20A;;chr5:137800878..137800898,+!p6@EGR1!0.15!0.67!EGR1;;chr5:150284461..150284481,-!p4@ZNF300!0.15!0.67!ZNF300;;chr8:103666182..103666197,-!p4@KLF10!0.15!0.67!KLF10;;chr8:81397876..81397898,+!p5@ZBTB10!0.15!0.67!ZBTB10;;chr19:47425425..47425441,+!p2@ARHGAP35!0.15!0.67!ARHGAP35;;chr1:158985469..158985489,+!p7@IFI16!0.15!0.67!IFI16;;chr10:3818891..3818895,-!p6@KLF6!0.15!0.67!KLF6;;chr11:130184828..130184839,-!p7@ZBTB44!0.15!0.67!ZBTB44;;chr12:7079807..7079848,-!p1@PHB2!0.14!222.73!PHB2;;chr13:27998720..27998826,+!p1@GTF3A!0.14!118.07!GTF3A;;chr7:102985160..102985273,-!p1@DNAJC2!0.14!30.86!DNAJC2;;chr4:57774042..57774114,+!p1@REST!0.14!30.19!REST;;
|fonse_cell_line=FF:10791-110H8
|fonse_cell_line=FF:10791-110H8
|fonse_cell_line_closure=FF:10791-110H8
|fonse_cell_line_closure=FF:10791-110H8
Line 66: Line 39:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
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|name=keratoacanthoma cell line:HKA-1
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|rna_box=110
|rna_catalog_number=
|rna_concentration=0.68058
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.16
|rna_od260/280=2.13
|rna_position=H8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=110H8
|rna_weight_ug=31.98726
|sample_age=77
|sample_category=cell lines
|sample_cell_catalog=jcrb1017
|sample_cell_line=HKA-1
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|sample_description=
|sample_dev_stage=
|sample_disease=keratoacanthoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.81898750587225e-245!GO:0005737;cytoplasm;1.37650239742322e-194!GO:0043226;organelle;3.21607811490687e-191!GO:0043229;intracellular organelle;1.48479214329297e-190!GO:0043231;intracellular membrane-bound organelle;2.32631990091029e-179!GO:0043227;membrane-bound organelle;3.32228662651649e-179!GO:0044422;organelle part;1.02110525111776e-157!GO:0044446;intracellular organelle part;3.27067786492669e-156!GO:0044444;cytoplasmic part;9.76904251006471e-135!GO:0032991;macromolecular complex;6.50963431972689e-107!GO:0044237;cellular metabolic process;4.57328981258118e-87!GO:0030529;ribonucleoprotein complex;1.68160783148201e-83!GO:0044238;primary metabolic process;5.57339275373871e-82!GO:0005739;mitochondrion;2.84443873601565e-81!GO:0043233;organelle lumen;1.14210759062654e-75!GO:0031974;membrane-enclosed lumen;1.14210759062654e-75!GO:0044428;nuclear part;2.66151424176108e-71!GO:0043170;macromolecule metabolic process;2.84967472177696e-71!GO:0003723;RNA binding;2.7814330791991e-66!GO:0005634;nucleus;1.24863206991256e-64!GO:0005515;protein binding;9.61465581682166e-61!GO:0043234;protein complex;1.07240179641688e-56!GO:0044429;mitochondrial part;1.32753754030273e-55!GO:0005840;ribosome;4.93590294985788e-55!GO:0031090;organelle membrane;1.25165636863736e-51!GO:0006412;translation;9.39039889732547e-50!GO:0003735;structural constituent of ribosome;6.95560507913195e-49!GO:0019538;protein metabolic process;7.20463801872501e-49!GO:0006396;RNA processing;5.45466055393043e-46!GO:0031967;organelle envelope;3.18978707571071e-45!GO:0031975;envelope;5.25282981861768e-45!GO:0044267;cellular protein metabolic process;2.42216991623689e-44!GO:0044260;cellular macromolecule metabolic process;4.680526748271e-44!GO:0043228;non-membrane-bound organelle;1.6520446393687e-43!GO:0043232;intracellular non-membrane-bound organelle;1.6520446393687e-43!GO:0031981;nuclear lumen;5.15398688467196e-43!GO:0033279;ribosomal subunit;2.24421227340931e-42!GO:0005829;cytosol;1.16844051167926e-41!GO:0044249;cellular biosynthetic process;4.0305761117041e-41!GO:0016043;cellular component organization and biogenesis;5.92360733107413e-41!GO:0015031;protein transport;8.62615017860348e-41!GO:0033036;macromolecule localization;1.67747829724624e-40!GO:0009058;biosynthetic process;2.85651133824544e-40!GO:0043283;biopolymer metabolic process;2.29498506291717e-39!GO:0008104;protein localization;2.13802930533722e-37!GO:0045184;establishment of protein localization;4.87824887201447e-37!GO:0009059;macromolecule biosynthetic process;4.64076068176426e-35!GO:0016071;mRNA metabolic process;6.22618319630005e-35!GO:0005740;mitochondrial envelope;1.21830621723605e-33!GO:0065003;macromolecular complex assembly;3.76118526959419e-33!GO:0010467;gene expression;5.44321986300424e-33!GO:0031966;mitochondrial membrane;2.16368394453505e-32!GO:0046907;intracellular transport;7.42489289306361e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.38508944949348e-32!GO:0019866;organelle inner membrane;1.69602534450365e-31!GO:0008380;RNA splicing;3.69642519753323e-31!GO:0006996;organelle organization and biogenesis;9.70750952404727e-30!GO:0006259;DNA metabolic process;2.03599728645724e-29!GO:0005743;mitochondrial inner membrane;2.19524028163712e-29!GO:0006397;mRNA processing;3.32377633879434e-29!GO:0022607;cellular component assembly;4.90214971866712e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.99875573187994e-29!GO:0006886;intracellular protein transport;6.03799099295053e-29!GO:0005654;nucleoplasm;2.6153587502015e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.56040408521317e-27!GO:0031980;mitochondrial lumen;5.23419711293933e-27!GO:0005759;mitochondrial matrix;5.23419711293933e-27!GO:0006119;oxidative phosphorylation;2.78922942169278e-26!GO:0044455;mitochondrial membrane part;1.40850766060077e-24!GO:0007049;cell cycle;4.55769139086048e-24!GO:0044445;cytosolic part;1.11276417858345e-23!GO:0044451;nucleoplasm part;2.18332385218769e-23!GO:0005681;spliceosome;2.69917913434544e-23!GO:0000166;nucleotide binding;3.27541793428357e-23!GO:0015934;large ribosomal subunit;8.71826742268431e-23!GO:0015935;small ribosomal subunit;1.17357619804083e-20!GO:0051641;cellular localization;1.31416113528316e-20!GO:0051649;establishment of cellular localization;3.83345853722941e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.32848596548249e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;4.93607696252976e-20!GO:0016462;pyrophosphatase activity;5.37963059699615e-20!GO:0005746;mitochondrial respiratory chain;9.13230465193494e-20!GO:0012505;endomembrane system;1.37077940774978e-19!GO:0017111;nucleoside-triphosphatase activity;5.19083887391228e-19!GO:0051186;cofactor metabolic process;1.50138629340791e-18!GO:0005761;mitochondrial ribosome;3.09158383483333e-18!GO:0000313;organellar ribosome;3.09158383483333e-18!GO:0005694;chromosome;3.83391182129769e-18!GO:0016874;ligase activity;4.70023002613116e-18!GO:0048770;pigment granule;5.87504086976661e-18!GO:0042470;melanosome;5.87504086976661e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.87593973802527e-18!GO:0005783;endoplasmic reticulum;8.78874849879446e-18!GO:0044265;cellular macromolecule catabolic process;9.69596014659405e-18!GO:0050136;NADH dehydrogenase (quinone) activity;2.47402692907064e-17!GO:0003954;NADH dehydrogenase activity;2.47402692907064e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.47402692907064e-17!GO:0022402;cell cycle process;2.70382757967991e-17!GO:0006512;ubiquitin cycle;5.43201935609124e-17!GO:0043285;biopolymer catabolic process;6.97245503603061e-17!GO:0003676;nucleic acid binding;1.13901559085551e-16!GO:0006974;response to DNA damage stimulus;2.89361055574451e-16!GO:0032553;ribonucleotide binding;2.98645378110224e-16!GO:0032555;purine ribonucleotide binding;2.98645378110224e-16!GO:0000278;mitotic cell cycle;3.21431192388034e-16!GO:0009057;macromolecule catabolic process;3.21614882332355e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.29138007723133e-16!GO:0017076;purine nucleotide binding;3.30886250326007e-16!GO:0006457;protein folding;3.31536855614213e-16!GO:0044248;cellular catabolic process;3.5010103455316e-16!GO:0005730;nucleolus;9.07422352927638e-16!GO:0044427;chromosomal part;1.29987302968201e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.35038951641011e-15!GO:0042773;ATP synthesis coupled electron transport;1.35038951641011e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.40606554561704e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.8657781811794e-15!GO:0008134;transcription factor binding;1.89358963350417e-15!GO:0022618;protein-RNA complex assembly;1.93278270757916e-15!GO:0044257;cellular protein catabolic process;2.68380158051182e-15!GO:0019941;modification-dependent protein catabolic process;2.77974622258743e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.77974622258743e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.25009192365066e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.5064074564684e-15!GO:0030964;NADH dehydrogenase complex (quinone);4.59636646117583e-15!GO:0045271;respiratory chain complex I;4.59636646117583e-15!GO:0005747;mitochondrial respiratory chain complex I;4.59636646117583e-15!GO:0006732;coenzyme metabolic process;7.79576428724986e-15!GO:0006605;protein targeting;1.26159998289812e-14!GO:0044432;endoplasmic reticulum part;1.26159998289812e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.52507292441983e-14!GO:0032559;adenyl ribonucleotide binding;2.94651147795323e-14!GO:0043412;biopolymer modification;3.06177941491577e-14!GO:0005524;ATP binding;3.07422131850579e-14!GO:0030554;adenyl nucleotide binding;4.81553241390728e-14!GO:0030163;protein catabolic process;6.39716176411731e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.14645155991026e-13!GO:0051276;chromosome organization and biogenesis;1.37040465117909e-13!GO:0008135;translation factor activity, nucleic acid binding;1.37040465117909e-13!GO:0006281;DNA repair;2.19286189265312e-13!GO:0009055;electron carrier activity;3.57747428685356e-13!GO:0042254;ribosome biogenesis and assembly;4.82359499032088e-13!GO:0006464;protein modification process;1.92986888429446e-12!GO:0016887;ATPase activity;2.11455062826619e-12!GO:0005635;nuclear envelope;2.19261651254076e-12!GO:0016070;RNA metabolic process;2.89600816049899e-12!GO:0051082;unfolded protein binding;3.05469962252179e-12!GO:0042623;ATPase activity, coupled;3.78508850997069e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;5.51019304507112e-12!GO:0006366;transcription from RNA polymerase II promoter;7.54596323953644e-12!GO:0043687;post-translational protein modification;7.58828118003582e-12!GO:0051188;cofactor biosynthetic process;8.77201995690473e-12!GO:0048193;Golgi vesicle transport;9.1449038829859e-12!GO:0022403;cell cycle phase;9.43114641180474e-12!GO:0051301;cell division;1.05396824254063e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.12895174717265e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.69618824269423e-11!GO:0000375;RNA splicing, via transesterification reactions;1.69618824269423e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.69618824269423e-11!GO:0000087;M phase of mitotic cell cycle;1.7354793695232e-11!GO:0031965;nuclear membrane;1.76754625106942e-11!GO:0006323;DNA packaging;1.89471529080376e-11!GO:0005789;endoplasmic reticulum membrane;1.90271325387587e-11!GO:0044453;nuclear membrane part;2.09271352890106e-11!GO:0007067;mitosis;2.12453296198383e-11!GO:0009719;response to endogenous stimulus;2.30707053651205e-11!GO:0005794;Golgi apparatus;3.1467431954783e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.25444388452076e-11!GO:0016604;nuclear body;5.33715285205703e-11!GO:0009056;catabolic process;1.96898217498789e-10!GO:0000074;regulation of progression through cell cycle;2.24158117680802e-10!GO:0003743;translation initiation factor activity;2.31615326144296e-10!GO:0051726;regulation of cell cycle;2.39750081035385e-10!GO:0016192;vesicle-mediated transport;2.51268320557555e-10!GO:0006461;protein complex assembly;2.79358823912749e-10!GO:0006399;tRNA metabolic process;2.89151046907084e-10!GO:0008565;protein transporter activity;2.95648196490142e-10!GO:0000785;chromatin;3.15724461131218e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.15724461131218e-10!GO:0006260;DNA replication;3.60644571228056e-10!GO:0065004;protein-DNA complex assembly;5.85669532892001e-10!GO:0003712;transcription cofactor activity;6.98170641539576e-10!GO:0015986;ATP synthesis coupled proton transport;7.59983505863921e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.59983505863921e-10!GO:0012501;programmed cell death;7.97380324611901e-10!GO:0005643;nuclear pore;8.23400807929422e-10!GO:0006913;nucleocytoplasmic transport;8.50174494941698e-10!GO:0006446;regulation of translational initiation;8.93464242021296e-10!GO:0006915;apoptosis;1.0023645490158e-09!GO:0009060;aerobic respiration;1.27858033890689e-09!GO:0006413;translational initiation;1.30600504193524e-09!GO:0051169;nuclear transport;2.10740505775577e-09!GO:0009259;ribonucleotide metabolic process;2.1426027858451e-09!GO:0009108;coenzyme biosynthetic process;2.37164093192534e-09!GO:0006163;purine nucleotide metabolic process;2.46739505959075e-09!GO:0016787;hydrolase activity;3.04312393692523e-09!GO:0005768;endosome;3.73476136654972e-09!GO:0000279;M phase;3.79106533823202e-09!GO:0006364;rRNA processing;4.93792136030227e-09!GO:0045333;cellular respiration;4.95843244326815e-09!GO:0008639;small protein conjugating enzyme activity;5.37519782327409e-09!GO:0016491;oxidoreductase activity;8.43267204391658e-09!GO:0016072;rRNA metabolic process;8.89478481136357e-09!GO:0009150;purine ribonucleotide metabolic process;9.32494094378022e-09!GO:0006333;chromatin assembly or disassembly;9.50768985761528e-09!GO:0004386;helicase activity;1.06269200530432e-08!GO:0046034;ATP metabolic process;1.0628080869143e-08!GO:0006754;ATP biosynthetic process;1.13655937113413e-08!GO:0006753;nucleoside phosphate metabolic process;1.13655937113413e-08!GO:0019829;cation-transporting ATPase activity;1.20396056852253e-08!GO:0006164;purine nucleotide biosynthetic process;1.31805694531273e-08!GO:0016607;nuclear speck;1.33764654761664e-08!GO:0004842;ubiquitin-protein ligase activity;1.37935970105083e-08!GO:0008219;cell death;1.39101036389111e-08!GO:0016265;death;1.39101036389111e-08!GO:0050657;nucleic acid transport;1.87064991437645e-08!GO:0051236;establishment of RNA localization;1.87064991437645e-08!GO:0050658;RNA transport;1.87064991437645e-08!GO:0048475;coated membrane;1.87064991437645e-08!GO:0030117;membrane coat;1.87064991437645e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.88294650941097e-08!GO:0043623;cellular protein complex assembly;1.92950921265045e-08!GO:0065002;intracellular protein transport across a membrane;1.94418988835322e-08!GO:0019787;small conjugating protein ligase activity;2.46796952891507e-08!GO:0017038;protein import;2.54337406327481e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.58243229092733e-08!GO:0006403;RNA localization;2.81932067086492e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.26720215366919e-08!GO:0009260;ribonucleotide biosynthetic process;3.59241551539852e-08!GO:0006099;tricarboxylic acid cycle;3.85944428083861e-08!GO:0046356;acetyl-CoA catabolic process;3.85944428083861e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.88145063507357e-08!GO:0046930;pore complex;5.14552981180804e-08!GO:0009141;nucleoside triphosphate metabolic process;7.52799765600319e-08!GO:0006084;acetyl-CoA metabolic process;7.8239705348206e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.60630365896625e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.19890413386495e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.02046090704092e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.02046090704092e-07!GO:0008026;ATP-dependent helicase activity;1.10222358310756e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.14934229300459e-07!GO:0007005;mitochondrion organization and biogenesis;1.17126833676043e-07!GO:0005667;transcription factor complex;1.1718328048909e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.46422741661015e-07!GO:0030120;vesicle coat;1.49476011123691e-07!GO:0030662;coated vesicle membrane;1.49476011123691e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.78093421263325e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.78093421263325e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.81371820990045e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.81371820990045e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.81371820990045e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.08807472210977e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.08807472210977e-07!GO:0016568;chromatin modification;2.38244920485294e-07!GO:0045259;proton-transporting ATP synthase complex;2.63380418726829e-07!GO:0006752;group transfer coenzyme metabolic process;2.73824196802617e-07!GO:0006091;generation of precursor metabolites and energy;3.68761843010567e-07!GO:0016740;transferase activity;3.83126512018511e-07!GO:0005762;mitochondrial large ribosomal subunit;4.09163668561676e-07!GO:0000315;organellar large ribosomal subunit;4.09163668561676e-07!GO:0006793;phosphorus metabolic process;4.56127959096302e-07!GO:0006796;phosphate metabolic process;4.56127959096302e-07!GO:0005793;ER-Golgi intermediate compartment;4.91912565182047e-07!GO:0043038;amino acid activation;4.94224439144054e-07!GO:0006418;tRNA aminoacylation for protein translation;4.94224439144054e-07!GO:0043039;tRNA aminoacylation;4.94224439144054e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.09230504141883e-07!GO:0016881;acid-amino acid ligase activity;5.1351356177229e-07!GO:0016779;nucleotidyltransferase activity;5.24547348112619e-07!GO:0009117;nucleotide metabolic process;5.37402462444988e-07!GO:0043566;structure-specific DNA binding;5.7348797169385e-07!GO:0009109;coenzyme catabolic process;7.04364753585199e-07!GO:0051028;mRNA transport;7.46062121314931e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.01316538166132e-06!GO:0051427;hormone receptor binding;1.47501258060986e-06!GO:0048523;negative regulation of cellular process;1.8338114377861e-06!GO:0051187;cofactor catabolic process;2.04124740603996e-06!GO:0031324;negative regulation of cellular metabolic process;2.10723859504759e-06!GO:0016563;transcription activator activity;2.22740673858254e-06!GO:0032446;protein modification by small protein conjugation;2.40803453740799e-06!GO:0016564;transcription repressor activity;2.48003830707166e-06!GO:0003697;single-stranded DNA binding;2.58905977024965e-06!GO:0016567;protein ubiquitination;2.93206570102339e-06!GO:0008654;phospholipid biosynthetic process;3.07249988637067e-06!GO:0035257;nuclear hormone receptor binding;3.37832293905136e-06!GO:0031497;chromatin assembly;3.50723505860396e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.73130923072224e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.89702929508864e-06!GO:0004298;threonine endopeptidase activity;3.97827754346594e-06!GO:0051329;interphase of mitotic cell cycle;4.03214131581657e-06!GO:0006334;nucleosome assembly;4.15132710523346e-06!GO:0015630;microtubule cytoskeleton;4.15850203550319e-06!GO:0045786;negative regulation of progression through cell cycle;4.34698902944533e-06!GO:0005773;vacuole;4.40499390954959e-06!GO:0000151;ubiquitin ligase complex;4.72319607043253e-06!GO:0005770;late endosome;4.90980627544111e-06!GO:0000245;spliceosome assembly;5.38984225206744e-06!GO:0005819;spindle;5.54886316198076e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.75751368575485e-06!GO:0000314;organellar small ribosomal subunit;1.0488568711131e-05!GO:0005763;mitochondrial small ribosomal subunit;1.0488568711131e-05!GO:0031988;membrane-bound vesicle;1.07313175487664e-05!GO:0003713;transcription coactivator activity;1.17426939962577e-05!GO:0005798;Golgi-associated vesicle;1.18298933926641e-05!GO:0000775;chromosome, pericentric region;1.22124095949083e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.28011349692789e-05!GO:0042981;regulation of apoptosis;1.28562280826609e-05!GO:0043067;regulation of programmed cell death;1.40617423123782e-05!GO:0051246;regulation of protein metabolic process;1.46942498763617e-05!GO:0048519;negative regulation of biological process;1.50977805538336e-05!GO:0016310;phosphorylation;1.60297184702925e-05!GO:0003899;DNA-directed RNA polymerase activity;1.93229852341374e-05!GO:0043069;negative regulation of programmed cell death;2.09767227373779e-05!GO:0051170;nuclear import;2.20270606860378e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.29218244434815e-05!GO:0051325;interphase;2.35574755574855e-05!GO:0005813;centrosome;2.56502713212887e-05!GO:0044431;Golgi apparatus part;2.56502713212887e-05!GO:0000323;lytic vacuole;2.60062513574479e-05!GO:0005764;lysosome;2.60062513574479e-05!GO:0003924;GTPase activity;2.63475477051956e-05!GO:0005815;microtubule organizing center;2.86331158726864e-05!GO:0006261;DNA-dependent DNA replication;3.07847153564136e-05!GO:0006606;protein import into nucleus;3.08106597134604e-05!GO:0043066;negative regulation of apoptosis;3.25816893952922e-05!GO:0007051;spindle organization and biogenesis;3.6839089575731e-05!GO:0006916;anti-apoptosis;3.78038430858443e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.662944994792e-05!GO:0009892;negative regulation of metabolic process;4.83374995975427e-05!GO:0006613;cotranslational protein targeting to membrane;5.36003027738113e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.93110437694385e-05!GO:0005769;early endosome;6.88340190519083e-05!GO:0048471;perinuclear region of cytoplasm;7.35277536303036e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.91002651892106e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;8.06175919823355e-05!GO:0015399;primary active transmembrane transporter activity;8.06175919823355e-05!GO:0031982;vesicle;9.50602512435528e-05!GO:0016481;negative regulation of transcription;9.96624802910808e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;9.98631013620553e-05!GO:0045454;cell redox homeostasis;0.000112763324313998!GO:0030118;clathrin coat;0.000120816831851365!GO:0016853;isomerase activity;0.000122347214725244!GO:0046489;phosphoinositide biosynthetic process;0.000123626031813071!GO:0046474;glycerophospholipid biosynthetic process;0.000134554802742267!GO:0050662;coenzyme binding;0.000147851267840861!GO:0051168;nuclear export;0.000157686423307328!GO:0044440;endosomal part;0.000158774534181718!GO:0010008;endosome membrane;0.000158774534181718!GO:0031410;cytoplasmic vesicle;0.000160145032013112!GO:0003690;double-stranded DNA binding;0.00017115137895295!GO:0019867;outer membrane;0.000178144096255608!GO:0003724;RNA helicase activity;0.000180580566756957!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.000198564137233818!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000215119758601854!GO:0006402;mRNA catabolic process;0.000255252853833031!GO:0042802;identical protein binding;0.000255252853833031!GO:0031968;organelle outer membrane;0.000257994644821629!GO:0048522;positive regulation of cellular process;0.000273305767740892!GO:0008033;tRNA processing;0.000274819078635273!GO:0005525;GTP binding;0.000295474772445608!GO:0030131;clathrin adaptor complex;0.000324667937281044!GO:0030119;AP-type membrane coat adaptor complex;0.00033308010357363!GO:0005741;mitochondrial outer membrane;0.000337029339945519!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000338059943210554!GO:0005788;endoplasmic reticulum lumen;0.000354842237129181!GO:0046983;protein dimerization activity;0.000361519051094098!GO:0030216;keratinocyte differentiation;0.000372736461543518!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000373345809014294!GO:0006352;transcription initiation;0.000384436437138117!GO:0000786;nucleosome;0.000395330169146617!GO:0015980;energy derivation by oxidation of organic compounds;0.000407261119163262!GO:0003714;transcription corepressor activity;0.000413127264185808!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000413839527749966!GO:0045941;positive regulation of transcription;0.000416274565448257!GO:0000139;Golgi membrane;0.000431682856064805!GO:0006302;double-strand break repair;0.000453166558249156!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.000462649470646878!GO:0043021;ribonucleoprotein binding;0.000485638263733468!GO:0048037;cofactor binding;0.000487952332431504!GO:0030132;clathrin coat of coated pit;0.000513009226765542!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000529375652563206!GO:0045893;positive regulation of transcription, DNA-dependent;0.000530282651064054!GO:0006612;protein targeting to membrane;0.000533294183109797!GO:0003729;mRNA binding;0.000537620029825155!GO:0015992;proton transport;0.000540017584025709!GO:0006818;hydrogen transport;0.000557429407782689!GO:0004576;oligosaccharyl transferase activity;0.000557429407782689!GO:0000075;cell cycle checkpoint;0.000574637775792302!GO:0003682;chromatin binding;0.00057587998024768!GO:0016859;cis-trans isomerase activity;0.000588862626459746!GO:0008250;oligosaccharyl transferase complex;0.000594129674473433!GO:0006650;glycerophospholipid metabolic process;0.000600895290175155!GO:0005657;replication fork;0.000604033755667998!GO:0006082;organic acid metabolic process;0.000606799994915396!GO:0006506;GPI anchor biosynthetic process;0.000619506632911232!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00062728855607035!GO:0006505;GPI anchor metabolic process;0.000680126347171609!GO:0009165;nucleotide biosynthetic process;0.000704605888507697!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00074368929947082!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00074368929947082!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00074368929947082!GO:0019752;carboxylic acid metabolic process;0.000766376843404356!GO:0033116;ER-Golgi intermediate compartment membrane;0.000788384929141456!GO:0043492;ATPase activity, coupled to movement of substances;0.000792068716923237!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000804300118829203!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000804300118829203!GO:0030384;phosphoinositide metabolic process;0.000806356087107785!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000806976667019302!GO:0022890;inorganic cation transmembrane transporter activity;0.000856800036963302!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000870606357969324!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000876759184314391!GO:0050794;regulation of cellular process;0.000880475750521662!GO:0008094;DNA-dependent ATPase activity;0.000888173773700886!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000902984305669666!GO:0051287;NAD binding;0.000908274615581878!GO:0043681;protein import into mitochondrion;0.000908274615581878!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000908274615581878!GO:0007398;ectoderm development;0.000930301638652059!GO:0007040;lysosome organization and biogenesis;0.000962571623123933!GO:0051920;peroxiredoxin activity;0.00104176084113662!GO:0030663;COPI coated vesicle membrane;0.00104256941755153!GO:0030126;COPI vesicle coat;0.00104256941755153!GO:0006118;electron transport;0.00106266331818447!GO:0006401;RNA catabolic process;0.00109064611374117!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00112440329155127!GO:0007006;mitochondrial membrane organization and biogenesis;0.00112502625295891!GO:0045892;negative regulation of transcription, DNA-dependent;0.00112502625295891!GO:0019843;rRNA binding;0.00121536361528455!GO:0006414;translational elongation;0.00123560572910858!GO:0008610;lipid biosynthetic process;0.00147124654456977!GO:0006839;mitochondrial transport;0.00148197796784482!GO:0006626;protein targeting to mitochondrion;0.00148500424810358!GO:0005048;signal sequence binding;0.00156333888728858!GO:0003702;RNA polymerase II transcription factor activity;0.00158034913779625!GO:0005684;U2-dependent spliceosome;0.00161456778714111!GO:0000082;G1/S transition of mitotic cell cycle;0.00166619173889515!GO:0065009;regulation of a molecular function;0.00167931331897389!GO:0046467;membrane lipid biosynthetic process;0.00177036674274227!GO:0005885;Arp2/3 protein complex;0.00177137531872202!GO:0030521;androgen receptor signaling pathway;0.00178338815345068!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00180443495809583!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0018453278043661!GO:0007033;vacuole organization and biogenesis;0.0018784049279818!GO:0008186;RNA-dependent ATPase activity;0.0018977647202405!GO:0051252;regulation of RNA metabolic process;0.00196318860321992!GO:0008544;epidermis development;0.00202455301207603!GO:0032561;guanyl ribonucleotide binding;0.00202455301207603!GO:0019001;guanyl nucleotide binding;0.00202455301207603!GO:0006497;protein amino acid lipidation;0.00203980562107555!GO:0030867;rough endoplasmic reticulum membrane;0.00205781694528456!GO:0043488;regulation of mRNA stability;0.00224578391312135!GO:0043487;regulation of RNA stability;0.00224578391312135!GO:0030137;COPI-coated vesicle;0.00233769399768572!GO:0046966;thyroid hormone receptor binding;0.00234289513342248!GO:0007264;small GTPase mediated signal transduction;0.0023842210340627!GO:0051789;response to protein stimulus;0.00246062654059041!GO:0006986;response to unfolded protein;0.00246062654059041!GO:0000776;kinetochore;0.00263900490806618!GO:0016044;membrane organization and biogenesis;0.00278098806973092!GO:0030176;integral to endoplasmic reticulum membrane;0.00278098806973092!GO:0018196;peptidyl-asparagine modification;0.00304500778039425!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00304500778039425!GO:0005905;coated pit;0.00319985821239833!GO:0016251;general RNA polymerase II transcription factor activity;0.0033043265658874!GO:0046483;heterocycle metabolic process;0.00330548658742424!GO:0007088;regulation of mitosis;0.0034169467194369!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00349515398124388!GO:0015002;heme-copper terminal oxidase activity;0.00349515398124388!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00349515398124388!GO:0004129;cytochrome-c oxidase activity;0.00349515398124388!GO:0006733;oxidoreduction coenzyme metabolic process;0.00353332172825894!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00381472747745183!GO:0001533;cornified envelope;0.00385229320439358!GO:0006383;transcription from RNA polymerase III promoter;0.003969644675402!GO:0044452;nucleolar part;0.0039709129676025!GO:0035258;steroid hormone receptor binding;0.00401774904415244!GO:0007052;mitotic spindle organization and biogenesis;0.00416028433085099!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00428350098632338!GO:0030658;transport vesicle membrane;0.00459628161902493!GO:0003678;DNA helicase activity;0.00469364398075094!GO:0005637;nuclear inner membrane;0.00476886539807382!GO:0004004;ATP-dependent RNA helicase activity;0.00486983318207819!GO:0031072;heat shock protein binding;0.00507590599918166!GO:0030659;cytoplasmic vesicle membrane;0.00508596519976263!GO:0051098;regulation of binding;0.00541815179538498!GO:0048500;signal recognition particle;0.00549076584574746!GO:0051052;regulation of DNA metabolic process;0.00560268223708439!GO:0016126;sterol biosynthetic process;0.00565211793127424!GO:0000059;protein import into nucleus, docking;0.0058496020697706!GO:0016197;endosome transport;0.00598298124591889!GO:0006405;RNA export from nucleus;0.00625352314728527!GO:0006891;intra-Golgi vesicle-mediated transport;0.00632168700720238!GO:0015631;tubulin binding;0.00637545818711852!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00657381815316419!GO:0032508;DNA duplex unwinding;0.0066612892614414!GO:0032392;DNA geometric change;0.0066612892614414!GO:0051087;chaperone binding;0.00674382706778823!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00686939645656046!GO:0005777;peroxisome;0.00686939645656046!GO:0042579;microbody;0.00686939645656046!GO:0006779;porphyrin biosynthetic process;0.00686939645656046!GO:0033014;tetrapyrrole biosynthetic process;0.00686939645656046!GO:0030125;clathrin vesicle coat;0.00715746781770636!GO:0030665;clathrin coated vesicle membrane;0.00715746781770636!GO:0030880;RNA polymerase complex;0.00722714976722106!GO:0031252;leading edge;0.0073688829316917!GO:0042158;lipoprotein biosynthetic process;0.00739672247693592!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00744705114495517!GO:0006611;protein export from nucleus;0.00751249111659892!GO:0043022;ribosome binding;0.00752375878365634!GO:0005869;dynactin complex;0.00752451288595925!GO:0006644;phospholipid metabolic process;0.00766591754909116!GO:0030133;transport vesicle;0.00767707090044163!GO:0008601;protein phosphatase type 2A regulator activity;0.007934592718017!GO:0044255;cellular lipid metabolic process;0.0080140918921174!GO:0048487;beta-tubulin binding;0.00835781532221217!GO:0003711;transcription elongation regulator activity;0.00838270195666122!GO:0004518;nuclease activity;0.00911877606532401!GO:0000159;protein phosphatase type 2A complex;0.00926584377498184!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00926584377498184!GO:0004527;exonuclease activity;0.00939155054369164!GO:0006310;DNA recombination;0.00941514165074303!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00974744010987881!GO:0006740;NADPH regeneration;0.00993547989071226!GO:0006098;pentose-phosphate shunt;0.00993547989071226!GO:0006767;water-soluble vitamin metabolic process;0.0100075109146288!GO:0006778;porphyrin metabolic process;0.01007429935519!GO:0033013;tetrapyrrole metabolic process;0.01007429935519!GO:0006672;ceramide metabolic process;0.0101941410422412!GO:0008312;7S RNA binding;0.0103644899657111!GO:0008180;signalosome;0.0105438169558531!GO:0016311;dephosphorylation;0.0105945509199216!GO:0003684;damaged DNA binding;0.0107321579394484!GO:0008287;protein serine/threonine phosphatase complex;0.0111648428995882!GO:0030660;Golgi-associated vesicle membrane;0.0115092771538536!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0115195439741612!GO:0044438;microbody part;0.0115195439741612!GO:0044439;peroxisomal part;0.0115195439741612!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0117471750530804!GO:0010257;NADH dehydrogenase complex assembly;0.0117471750530804!GO:0033108;mitochondrial respiratory chain complex assembly;0.0117471750530804!GO:0030518;steroid hormone receptor signaling pathway;0.0120797695539254!GO:0006268;DNA unwinding during replication;0.0127877488539266!GO:0016272;prefoldin complex;0.0128653705167047!GO:0031124;mRNA 3'-end processing;0.0131056948486324!GO:0005856;cytoskeleton;0.0134830525510885!GO:0006979;response to oxidative stress;0.0135281740343199!GO:0006643;membrane lipid metabolic process;0.01376910733922!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0141046543529905!GO:0005774;vacuolar membrane;0.0141079090192862!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0141542646168126!GO:0000428;DNA-directed RNA polymerase complex;0.0141542646168126!GO:0000030;mannosyltransferase activity;0.0143507872001157!GO:0005876;spindle microtubule;0.0144219418604528!GO:0005832;chaperonin-containing T-complex;0.0144774325369353!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0147352485497218!GO:0045047;protein targeting to ER;0.0147352485497218!GO:0006520;amino acid metabolic process;0.0150089012811816!GO:0004674;protein serine/threonine kinase activity;0.0151839524039443!GO:0007059;chromosome segregation;0.0158771288007933!GO:0048518;positive regulation of biological process;0.0158771288007933!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0163102836569769!GO:0044433;cytoplasmic vesicle part;0.0167541588713695!GO:0016791;phosphoric monoester hydrolase activity;0.0168827644733535!GO:0030057;desmosome;0.0171415764793397!GO:0008652;amino acid biosynthetic process;0.0172881923950279!GO:0051540;metal cluster binding;0.0173445017791911!GO:0051536;iron-sulfur cluster binding;0.0173445017791911!GO:0046822;regulation of nucleocytoplasmic transport;0.0178558305786066!GO:0012506;vesicle membrane;0.0180278579510244!GO:0004300;enoyl-CoA hydratase activity;0.0182410580744234!GO:0031902;late endosome membrane;0.0183113253939995!GO:0006368;RNA elongation from RNA polymerase II promoter;0.018624394369832!GO:0007034;vacuolar transport;0.0186370076498915!GO:0005791;rough endoplasmic reticulum;0.0189342062660806!GO:0006284;base-excision repair;0.0191826822807757!GO:0031625;ubiquitin protein ligase binding;0.0193249954891365!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0193249954891365!GO:0008139;nuclear localization sequence binding;0.019368602511403!GO:0008022;protein C-terminus binding;0.0194468425407729!GO:0007093;mitotic cell cycle checkpoint;0.0195135247207248!GO:0007041;lysosomal transport;0.0195471046727669!GO:0030145;manganese ion binding;0.0195665783648374!GO:0006695;cholesterol biosynthetic process;0.0197661126623816!GO:0031903;microbody membrane;0.0198379981177107!GO:0005778;peroxisomal membrane;0.0198379981177107!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0199406597192112!GO:0009303;rRNA transcription;0.0202279970839201!GO:0004177;aminopeptidase activity;0.0202588414938074!GO:0051539;4 iron, 4 sulfur cluster binding;0.0203782218712835!GO:0016741;transferase activity, transferring one-carbon groups;0.020498737383248!GO:0008168;methyltransferase activity;0.0205949169964217!GO:0007017;microtubule-based process;0.0208586860695114!GO:0008632;apoptotic program;0.0208843126957151!GO:0000178;exosome (RNase complex);0.0209106117805625!GO:0030032;lamellipodium biogenesis;0.0209267483555192!GO:0046519;sphingoid metabolic process;0.0209267483555192!GO:0019899;enzyme binding;0.0209430296936053!GO:0016363;nuclear matrix;0.0209741324265654!GO:0032507;maintenance of cellular protein localization;0.0210488410987338!GO:0006338;chromatin remodeling;0.0210600234277804!GO:0043414;biopolymer methylation;0.0210645908957465!GO:0051452;cellular pH reduction;0.021345035171302!GO:0051453;regulation of cellular pH;0.021345035171302!GO:0045851;pH reduction;0.021345035171302!GO:0006730;one-carbon compound metabolic process;0.0218667529279453!GO:0030128;clathrin coat of endocytic vesicle;0.022216297111394!GO:0030669;clathrin-coated endocytic vesicle membrane;0.022216297111394!GO:0030122;AP-2 adaptor complex;0.022216297111394!GO:0003746;translation elongation factor activity;0.0225185713404448!GO:0030031;cell projection biogenesis;0.0225239804868181!GO:0003756;protein disulfide isomerase activity;0.0227045518811283!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0227045518811283!GO:0007010;cytoskeleton organization and biogenesis;0.0228466076004244!GO:0000049;tRNA binding;0.0228833761131704!GO:0031529;ruffle organization and biogenesis;0.0230173140011972!GO:0045334;clathrin-coated endocytic vesicle;0.0235862136915478!GO:0017166;vinculin binding;0.0236537673318133!GO:0016584;nucleosome positioning;0.0236537673318133!GO:0050681;androgen receptor binding;0.0238128556568851!GO:0030134;ER to Golgi transport vesicle;0.0239128670820997!GO:0006783;heme biosynthetic process;0.0240018347539989!GO:0009081;branched chain family amino acid metabolic process;0.0240018347539989!GO:0000339;RNA cap binding;0.0246944676116931!GO:0016408;C-acyltransferase activity;0.0248263511185347!GO:0005669;transcription factor TFIID complex;0.0255264947819883!GO:0000096;sulfur amino acid metabolic process;0.025788527812659!GO:0016783;sulfurtransferase activity;0.0261618771118004!GO:0043284;biopolymer biosynthetic process;0.0263295514998478!GO:0043550;regulation of lipid kinase activity;0.0271402608657556!GO:0006289;nucleotide-excision repair;0.0271556639480609!GO:0006635;fatty acid beta-oxidation;0.0277981370911631!GO:0044437;vacuolar part;0.0280145305838729!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0288754240603774!GO:0043624;cellular protein complex disassembly;0.0288968534857918!GO:0006378;mRNA polyadenylation;0.029124533082697!GO:0050790;regulation of catalytic activity;0.0298308951190627!GO:0006007;glucose catabolic process;0.0299657992294415!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0300869145482268!GO:0007243;protein kinase cascade;0.030324188714859!GO:0005874;microtubule;0.0305519345496424!GO:0006518;peptide metabolic process;0.0306218591218354!GO:0009967;positive regulation of signal transduction;0.0316435144305421!GO:0044262;cellular carbohydrate metabolic process;0.0320191657567903!GO:0004721;phosphoprotein phosphatase activity;0.0322804495553824!GO:0042168;heme metabolic process;0.032918915127673!GO:0006354;RNA elongation;0.0331925418670315!GO:0004448;isocitrate dehydrogenase activity;0.0334430070313843!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0335373800948848!GO:0032259;methylation;0.0340111009621578!GO:0008538;proteasome activator activity;0.0340111009621578!GO:0043403;skeletal muscle regeneration;0.0340832013613954!GO:0006516;glycoprotein catabolic process;0.0344861540828885!GO:0000792;heterochromatin;0.0365561747309633!GO:0000228;nuclear chromosome;0.0365698547178626!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0376724740252613!GO:0051651;maintenance of cellular localization;0.0379861685902705!GO:0000086;G2/M transition of mitotic cell cycle;0.0384183431816614!GO:0009451;RNA modification;0.0386065127822071!GO:0016407;acetyltransferase activity;0.0386065127822071!GO:0006892;post-Golgi vesicle-mediated transport;0.0387302126358967!GO:0008426;protein kinase C inhibitor activity;0.0388575524611855!GO:0006739;NADP metabolic process;0.0392706720501031!GO:0030911;TPR domain binding;0.0396652809289562!GO:0000287;magnesium ion binding;0.0396652809289562!GO:0015036;disulfide oxidoreductase activity;0.0401315421437776!GO:0009083;branched chain family amino acid catabolic process;0.0404737040526116!GO:0016860;intramolecular oxidoreductase activity;0.0409428178903769!GO:0022411;cellular component disassembly;0.0409428178903769!GO:0019362;pyridine nucleotide metabolic process;0.0410793815968505!GO:0006275;regulation of DNA replication;0.0421841894832371!GO:0004563;beta-N-acetylhexosaminidase activity;0.0422787941909842!GO:0030508;thiol-disulfide exchange intermediate activity;0.0425252884746049!GO:0030127;COPII vesicle coat;0.0425252884746049!GO:0012507;ER to Golgi transport vesicle membrane;0.0425252884746049!GO:0009112;nucleobase metabolic process;0.043025895587981!GO:0043154;negative regulation of caspase activity;0.0433408378363931!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0434818986086909!GO:0004427;inorganic diphosphatase activity;0.0443088423701391!GO:0006376;mRNA splice site selection;0.0447481114208376!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0447481114208376!GO:0032984;macromolecular complex disassembly;0.0448486091757437!GO:0006470;protein amino acid dephosphorylation;0.0450713054627317!GO:0006360;transcription from RNA polymerase I promoter;0.0450757232560493!GO:0000118;histone deacetylase complex;0.045125154175539!GO:0005784;translocon complex;0.0456452292773098!GO:0005765;lysosomal membrane;0.0456452292773098!GO:0030140;trans-Golgi network transport vesicle;0.0456953778976693!GO:0006595;polyamine metabolic process;0.0456953778976693!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0457661441513965!GO:0019206;nucleoside kinase activity;0.0460003591958693!GO:0031371;ubiquitin conjugating enzyme complex;0.0460492791322302!GO:0004722;protein serine/threonine phosphatase activity;0.0464821773800626!GO:0004532;exoribonuclease activity;0.0465189442868652!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0465189442868652!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0467107352101085!GO:0050178;phenylpyruvate tautomerase activity;0.0478322559371043!GO:0003725;double-stranded RNA binding;0.0481829637678609!GO:0007050;cell cycle arrest;0.0489754823875243!GO:0007265;Ras protein signal transduction;0.0491818428994068
|sample_id=10791
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
|top_motifs=FOXQ1:1.89720113161;NKX2-3_NKX2-5:1.59918391668;ZEB1:1.56876581904;TP53:1.53497383291;NANOG:1.45821919034;SNAI1..3:1.4186802554;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.32840567596;VSX1,2:1.25836165169;NKX2-1,4:1.19424830797;RBPJ:1.17719235;ARID5B:1.12480232938;ELK1,4_GABP{A,B1}:1.04658521925;NR6A1:0.964229946669;FOX{I1,J2}:0.947121575449;NR5A1,2:0.913073600094;ONECUT1,2:0.881883802563;TBX4,5:0.814052246629;FOXM1:0.810708069099;PAX2:0.793151974564;bHLH_family:0.736416595722;PBX1:0.71299478399;PAX1,9:0.662441677531;TEF:0.655465219524;NFY{A,B,C}:0.648334491976;PDX1:0.585580657583;YY1:0.583359759516;PAX4:0.580492377766;ADNP_IRX_SIX_ZHX:0.575948104137;FOX{F1,F2,J1}:0.575532443792;E2F1..5:0.571109255189;LHX3,4:0.569279645451;POU1F1:0.567421682614;T:0.549941938842;TOPORS:0.498784344097;PITX1..3:0.486394558989;ALX1:0.485158681907;XCPE1{core}:0.448764527617;HOX{A6,A7,B6,B7}:0.433453243151;FOXN1:0.433191897188;NKX3-2:0.429019004673;FOS_FOS{B,L1}_JUN{B,D}:0.419861091179;ESRRA:0.407349353768;TBP:0.401581411897;CDC5L:0.391420800697;IKZF1:0.379952636455;NRF1:0.374801451893;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.346201855338;SP1:0.325204990796;ZNF384:0.324033152586;RFX2..5_RFXANK_RFXAP:0.312476701775;MYOD1:0.309007905834;NFIL3:0.305094613823;ATF4:0.296649018373;CRX:0.296265760564;FOXP1:0.247099361338;HAND1,2:0.231982492938;PPARG:0.19417514674;HOX{A4,D4}:0.191572749586;SREBF1,2:0.186980835087;PAX8:0.177796836666;TFAP2{A,C}:0.175735642576;HSF1,2:0.16269207046;OCT4_SOX2{dimer}:0.144901583969;SOX17:0.139014979827;NFE2:0.136141321282;HOX{A5,B5}:0.125619919952;ZNF143:0.119945793057;LMO2:0.111482605012;BPTF:0.103333648531;ZNF148:0.101700813667;TFAP2B:0.0963368482788;PRRX1,2:0.088481381674;NKX6-1,2:0.0871314172269;AIRE:0.0865282343371;POU6F1:0.0844276193426;FOXO1,3,4:0.0759716864816;RORA:0.0722540458857;BREu{core}:0.0601818245502;ATF5_CREB3:0.0518584850347;HIC1:0.0494597459399;POU2F1..3:0.0229042825678;REST:0.0220996534465;FOX{D1,D2}:0.0172869968218;CEBPA,B_DDIT3:0.0169119710677;TFDP1:-9.60593125087e-05;TEAD1:-0.00528393843228;MED-1{core}:-0.0462970060183;NKX3-1:-0.0615728590454;BACH2:-0.0909288551432;EP300:-0.0943111043376;TLX1..3_NFIC{dimer}:-0.0945597164347;MYBL2:-0.106649447956;KLF4:-0.113511616307;IRF7:-0.11894462907;ZBTB16:-0.120946886575;FOXP3:-0.126684254517;FOXL1:-0.137904913398;ZNF238:-0.151784199859;FOSL2:-0.164392864504;ZBTB6:-0.166070454102;SOX2:-0.17371805904;CREB1:-0.179202208814;HNF1A:-0.182087091506;ZIC1..3:-0.189912525558;GFI1:-0.195493980462;NFE2L2:-0.202244733039;RXR{A,B,G}:-0.217860386821;SOX{8,9,10}:-0.221864716374;EN1,2:-0.233281632622;ALX4:-0.238034892272;ZFP161:-0.247021986481;ELF1,2,4:-0.247728784174;HNF4A_NR2F1,2:-0.24913698572;MTE{core}:-0.252297096316;POU5F1:-0.262087544885;HLF:-0.262829983452;MTF1:-0.272763271465;UFEwm:-0.27974006773;NKX2-2,8:-0.281020000962;GTF2A1,2:-0.298688635447;GLI1..3:-0.309870105327;ESR1:-0.315288877164;CDX1,2,4:-0.332538797642;RFX1:-0.334269565761;AR:-0.343365219277;JUN:-0.347129310625;FOXD3:-0.348361187977;MEF2{A,B,C,D}:-0.356437999758;IKZF2:-0.367508241132;STAT5{A,B}:-0.371700370203;AHR_ARNT_ARNT2:-0.373477126654;NR1H4:-0.378741595085;PAX6:-0.378876990594;TFCP2:-0.388554061605;GFI1B:-0.395931344349;EGR1..3:-0.398094284947;HOXA9_MEIS1:-0.403764152306;NFKB1_REL_RELA:-0.408358275062;ATF2:-0.413028987146;MYB:-0.430393091396;TAL1_TCF{3,4,12}:-0.449334163762;GATA6:-0.476014232663;ZNF423:-0.4830614341;HMX1:-0.492599243014;PAX5:-0.536249954743;NANOG{mouse}:-0.536480938048;GTF2I:-0.539689706138;EVI1:-0.549590523924;MAZ:-0.555426399928;SPIB:-0.558190241203;ETS1,2:-0.577880835316;NFIX:-0.632054333445;SPI1:-0.658456083078;MYFfamily:-0.663266912249;EBF1:-0.681119203571;GZF1:-0.704166755996;CUX2:-0.714139973609;DMAP1_NCOR{1,2}_SMARC:-0.721037362635;HIF1A:-0.731457530842;TGIF1:-0.749557396595;LEF1_TCF7_TCF7L1,2:-0.75045360392;RUNX1..3:-0.75732107625;FOXA2:-0.780807738799;HBP1_HMGB_SSRP1_UBTF:-0.782043794286;GATA4:-0.783915872471;PRDM1:-0.797351032884;POU3F1..4:-0.850030200564;SOX5:-0.856556564479;IRF1,2:-0.857981321028;PATZ1:-0.923193409263;SMAD1..7,9:-0.949232864129;HMGA1,2:-0.962717073859;TLX2:-0.977465113439;XBP1:-0.982360361096;PAX3,7:-1.00295224009;NHLH1,2:-1.04558962401;RREB1:-1.07220243938;MAFB:-1.11950522027;SPZ1:-1.12864202718;NR3C1:-1.15023205777;ATF6:-1.15029753806;NFE2L1:-1.17276585261;STAT2,4,6:-1.18197890679;HES1:-1.29620232838;RXRA_VDR{dimer}:-1.36894858241;GCM1,2:-1.37666572149;STAT1,3:-1.5173854813;SRF:-1.53277468105;MZF1:-1.55467358147;TFAP4:-1.58308152137;NFATC1..3:-1.60050567086;DBP:-1.61137298178
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10791-110H8;search_select_hide=table117:FF:10791-110H8
}}
}}

Latest revision as of 15:05, 3 June 2020

Name:keratoacanthoma cell line:HKA-1
Species:Human (Homo sapiens)
Library ID:CNhs11880
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexfemale
age77
cell typeunclassifiable
cell lineHKA-1
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005555
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11880 CAGE DRX007910 DRR008782
Accession ID Hg19

Library idBAMCTSS
CNhs11880 DRZ000207 DRZ001592
Accession ID Hg38

Library idBAMCTSS
CNhs11880 DRZ011557 DRZ012942
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.316
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.28
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.122
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.1
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.671
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0248
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.94
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.126
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.387
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0374
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.313
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.126
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11880

Jaspar motifP-value
MA0002.20.0188
MA0003.10.0511
MA0004.10.0935
MA0006.10.398
MA0007.10.857
MA0009.10.204
MA0014.10.19
MA0017.10.357
MA0018.20.805
MA0019.10.445
MA0024.10.00884
MA0025.10.873
MA0027.10.382
MA0028.14.33315e-5
MA0029.10.598
MA0030.10.399
MA0031.10.441
MA0035.20.321
MA0038.10.973
MA0039.20.00423
MA0040.10.3
MA0041.10.286
MA0042.10.702
MA0043.10.231
MA0046.10.659
MA0047.20.811
MA0048.10.242
MA0050.18.28422e-6
MA0051.10.00179
MA0052.10.065
MA0055.14.7466e-4
MA0057.10.13
MA0058.10.0276
MA0059.10.186
MA0060.12.52493e-4
MA0061.14.50412e-4
MA0062.26.11221e-6
MA0065.20.805
MA0066.10.966
MA0067.10.222
MA0068.10.694
MA0069.10.497
MA0070.10.671
MA0071.10.44
MA0072.10.922
MA0073.10.897
MA0074.10.923
MA0076.14.0213e-5
MA0077.10.665
MA0078.10.151
MA0079.20.358
MA0080.27.92944e-8
MA0081.10.0594
MA0083.16.85563e-6
MA0084.10.246
MA0087.10.97
MA0088.10.805
MA0090.10.422
MA0091.10.0311
MA0092.10.34
MA0093.10.0741
MA0099.20.73
MA0100.10.571
MA0101.10.00226
MA0102.20.297
MA0103.12.01399e-6
MA0104.20.0493
MA0105.11.04486e-4
MA0106.16.61548e-5
MA0107.11.43991e-4
MA0108.20.00391
MA0111.10.467
MA0112.20.295
MA0113.10.666
MA0114.10.721
MA0115.10.988
MA0116.10.0338
MA0117.10.249
MA0119.10.422
MA0122.10.288
MA0124.10.123
MA0125.10.00911
MA0131.10.162
MA0135.10.989
MA0136.12.79295e-4
MA0137.21.18998e-4
MA0138.20.586
MA0139.10.857
MA0140.10.917
MA0141.10.39
MA0142.10.065
MA0143.10.597
MA0144.10.0313
MA0145.10.693
MA0146.10.338
MA0147.10.144
MA0148.10.251
MA0149.10.0141
MA0150.10.896
MA0152.10.497
MA0153.10.993
MA0154.10.00343
MA0155.10.0583
MA0156.10.0369
MA0157.10.679
MA0159.10.947
MA0160.10.783
MA0162.10.935
MA0163.10.0113
MA0164.10.633
MA0258.10.849
MA0259.10.387



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11880

Novel motifP-value
10.441
100.678
1000.107
1010.898
1020.262
1030.55
1040.958
1050.669
1060.317
1070.461
1080.915
1090.00826
110.51
1100.764
1110.436
1120.622
1130.291
1140.774
1150.514
1160.385
1170.585
1180.331
1190.143
120.661
1200.293
1210.468
1220.118
1230.025
1240.0318
1250.727
1260.621
1270.899
1280.363
1290.384
130.00934
1300.764
1310.0767
1320.597
1330.0259
1340.262
1350.0239
1360.00495
1370.0137
1380.474
1390.515
140.984
1400.715
1410.0552
1420.208
1430.106
1440.48
1450.383
1460.0868
1470.871
1480.621
1490.29
150.875
1500.848
1510.938
1520.259
1530.836
1540.598
1550.32
1560.985
1570.947
1580.45
1590.204
160.557
1600.958
1610.501
1620.691
1630.0748
1640.218
1650.82
1660.0608
1670.0666
1680.265
1690.948
170.244
180.195
190.00986
20.607
200.334
210.67
220.526
230.00735
240.189
250.976
260.0583
270.593
280.389
290.401
30.805
300.533
310.586
320.131
330.335
340.199
350.241
360.518
370.745
380.437
390.786
40.773
400.0208
410.143
420.746
430.49
440.0672
450.763
460.939
470.466
480.153
490.369
50.524
500.901
510.948
520.663
530.869
540.674
550.691
560.746
570.22
580.76
590.446
60.678
600.807
610.924
620.488
630.727
640.365
650.896
660.0769
670.753
680.751
690.139
70.48
700.579
710.396
720.672
730.0454
748.51995e-4
750.322
760.949
770.729
780.00457
790.404
80.288
800.313
810.249
820.839
830.276
840.432
850.39
860.142
870.00422
880.926
890.923
90.219
900.27
910.115
920.366
930.684
940.0889
950.0421
960.139
970.893
980.984
990.925



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11880


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3451 (skin carcinoma)
3151 (skin squamous cell carcinoma)
4159 (skin cancer)
0060122 (integumentary system cancer)
3149 (keratoacanthoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000014 (zone of skin)
0002097 (skin of body)
0002199 (integument)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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