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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000118,UBERON:0000119,UBERON:0000170,UBERON:0000171,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002048,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005153,UBERON:0005178,UBERON:0005181,UBERON:0005423,UBERON:0005597,UBERON:0005911,UBERON:0007026,UBERON:0008947,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00004855
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000077,CL:0000144,CL:0000213,CL:0000215,CL:0000220,CL:0000222,CL:0000255,CL:0000548,CL:0002321
|accession_numbers=CAGE;DRX007947;DRR008819;DRZ000244;DRZ001629;DRZ011594;DRZ012979
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000082,CL:0000255,CL:0000077
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0101120,FF:0100762,FF:0102553,FF:0102424,FF:0103008
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:61520075..61520136,+!p1@C11orf9!1.84!140.06!C11orf9;;chr15:83953397..83953425,-!p1@BNC1!1.76!64.63!BNC1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.55!34.53!SEBOX;;chr6:10415276..10415341,-!p2@TFAP2A!1.53!39.93!TFAP2A;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.50!30.67!SEBOX;;chr7:27153454..27153469,-!p2@HOXA3!1.38!22.96!HOXA3;;chr11:32457075..32457095,-!p1@WT1!1.33!20.26!WT1;;chr18:19749541..19749557,+!p1@GATA6!1.32!61.73!GATA6;;chr6:10412600..10412637,-!p1@TFAP2A!1.32!32.80!TFAP2A;;chr8:37963466..37963506,+!p3@ASH2L!1.27!21.80!ASH2L;;chr4:87857474..87857489,+!p7@AFF1!1.21!26.24!AFF1;;chr6:34204921..34204939,+!p3@HMGA1!1.14!385.06!HMGA1;;chr18:19749386..19749404,+!p2@GATA6!1.13!17.94!GATA6;;chr6:10412392..10412409,-!p4@TFAP2A!1.12!14.08!TFAP2A;;chr11:65667884..65667895,-!p2@FOSL1!1.11!45.72!FOSL1;;chr11:65686802..65686818,+!p6@DRAP1!1.11!20.83!DRAP1;;chr1:158985493..158985535,+!p4@IFI16!1.10!17.75!IFI16;;chr7:26191809..26191890,+!p1@NFE2L3!1.05!51.32!NFE2L3;;chr6:126240380..126240430,+!p2@NCOA7!1.05!26.62!NCOA7;;chr8:11561684..11561751,+!p1@GATA4!1.04!10.03!GATA4;;chr12:80084167..80084197,-!p5@PAWR!1.02!22.76!PAWR;;chr15:67418047..67418093,+!p4@SMAD3!1.01!11.77!SMAD3;;chr16:67881588..67881612,-!p2@CENPT!1.00!12.54!CENPT;;chrY:2803415..2803468,+!p1@ZFY!1.00!9.07!ZFY;;chr8:106330656..106330684,+!p1@ZFPM2!0.98!23.15!ZFPM2;;chr7:101917447..101917479,+!p4@CUX1!0.97!8.30!CUX1;;chr11:65687243..65687276,+!p8@DRAP1!0.95!10.80!DRAP1;;chr11:120107344..120107351,+!p1@POU2F3!0.95!9.65!POU2F3;;chr15:67418177..67418204,+!p9@SMAD3!0.95!7.91!SMAD3;;chr11:65667846..65667868,-!p1@FOSL1!0.94!209.50!FOSL1;;chr7:27142290..27142310,-!p1@HOXA2!0.94!7.72!HOXA2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!0.94!7.72!SEBOX;;chr15:83953373..83953386,-!p2@BNC1!0.92!7.33!BNC1;;chr15:67418119..67418162,+!p5@SMAD3!0.90!7.72!SMAD3;;chr11:65686732..65686756,+!p2@DRAP1!0.89!29.90!DRAP1;;chr17:46622070..46622109,-!p1@HOXB2!0.89!15.63!HOXB2;;chr3:141121847..141121868,+!p5@ZBTB38!0.89!10.42!ZBTB38;;chr5:2751762..2751784,-!p1@IRX2!0.89!6.75!IRX2;;chr7:19157043..19157088,-!p2@TWIST1!0.88!17.36!TWIST1;;chr19:12203100..12203132,+!p1@ZNF788!0.87!13.50!ZNF788;;chr11:65687222..65687240,+!p7@DRAP1!0.86!8.10!DRAP1;;chr6:10415263..10415274,-!p8@TFAP2A!0.86!6.17!TFAP2A;;chr5:72744594..72744609,-!p1@FOXD1!0.85!29.71!FOXD1;;chr6:1389789..1389821,+!p1@FOXF2!0.85!8.49!FOXF2;;chr5:134369905..134369972,-!p1@PITX1!0.84!9.26!PITX1;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.98!KDM5D;;chr6:19837592..19837621,+!p1@ID4!0.82!36.46!ID4;;chr18:19749517..19749531,+!p3@GATA6!0.82!10.42!GATA6;;chr15:37392094..37392116,-!p6@MEIS2!0.82!7.14!MEIS2;;chr17:7493405..7493419,-!p1@SOX15!0.81!5.40!SOX15;;chr7:27183263..27183284,-!p2@HOXA5!0.81!5.40!HOXA5;;chr12:8186270..8186292,+!p3@FOXJ2!0.81!5.40!FOXJ2;;chr1:6479968..6479986,-!p1@HES2!0.81!5.40!HES2;;chr12:80084137..80084165,-!p10@PAWR!0.80!6.94!PAWR;;chr6:126240442..126240459,+!p4@NCOA7!0.80!6.94!NCOA7;;chr11:65687362..65687436,+!p3@DRAP1!0.79!25.66!DRAP1;;chr12:80084737..80084763,-!p3@PAWR!0.79!20.83!PAWR;;chr6:85473156..85473210,-!p2@TBX18!0.79!6.37!TBX18;;chr20:42295745..42295765,+!p1@MYBL2!0.77!87.00!MYBL2;;chr6:126240356..126240379,+!p7@NCOA7!0.76!5.98!NCOA7;;chr2:46524897..46524911,+!p2@EPAS1!0.75!13.89!EPAS1;;chr17:46622114..46622138,-!p4@HOXB2!0.75!7.33!HOXB2;;chr6:28321909..28321965,-!p3@ZNF323!0.75!4.63!ZNF323;;chr8:67525443..67525459,-!p2@MYBL1!0.74!6.94!MYBL1;;chr6:10412576..10412599,-!p5@TFAP2A!0.74!4.44!TFAP2A;;chr7:101917482..101917507,+!p6@CUX1!0.74!4.44!CUX1;;chr17:46703687..46703740,-!p1@HOXB9!0.74!4.44!HOXB9;;chr10:51572408..51572454,+!p3@NCOA4!0.73!28.55!NCOA4;;chr8:37963407..37963454,+!p2@ASH2L!0.72!13.89!ASH2L;;chr4:87857491..87857519,+!p10@AFF1!0.72!6.17!AFF1;;chr6:126240463..126240489,+!p6@NCOA7!0.72!4.82!NCOA7;;chr7:27153428..27153440,-!p3@HOXA3!0.72!4.24!HOXA3;;chr8:106330696..106330719,+!p2@ZFPM2!0.71!5.40!ZFPM2;;chr5:72744445..72744466,-!p2@FOXD1!0.70!7.14!FOXD1;;chr5:43067636..43067674,+!p6@ZNF131!0.70!5.59!ZNF131;;chr1:158985469..158985489,+!p7@IFI16!0.70!4.82!IFI16;;chr7:101917407..101917443,+!p3@CUX1!0.70!4.05!CUX1;;chr3:111314186..111314204,-!p1@ZBED2!0.70!4.05!ZBED2;;chr11:32456954..32456965,-!p4@WT1!0.70!4.05!WT1;;chr12:124873357..124873401,-!p1@NCOR2!0.69!51.89!NCOR2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.69!5.02!L3MBTL4;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.69!3.86!HOXC5;;chr6:34204672..34204692,+!p1@HMGA1!0.68!493.09!HMGA1;;chr15:67358163..67358192,+!p1@SMAD3!0.68!101.47!SMAD3;;chr3:128206762..128206781,-!p2@GATA2!0.68!26.82!GATA2;;chr12:124873852..124873881,-!p3@NCOR2!0.68!26.24!NCOR2;;chr12:7079780..7079791,-!p2@PHB2!0.68!22.76!PHB2;;chr11:32457103..32457123,-!p3@WT1!0.67!3.67!WT1;;chr2:74730087..74730102,-!p4@LBX2!0.67!3.67!LBX2;;chr14:21566731..21566836,-!p1@ZNF219!0.66!44.18!ZNF219;;chr19:53193731..53193767,-!p1@ZNF83!0.66!36.85!ZNF83;;chr12:3068544..3068597,+!p1@TEAD4!0.65!24.31!TEAD4;;chr15:96874244..96874259,+!p5@NR2F2!0.65!9.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|ffid_belonging_in_development=CL:0000222,UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
|fonse_cell_line=FF:0100353,FF:0101120,FF:0102424
|fonse_cell_line=FF:0100353,FF:0101120,FF:0102424
|fonse_cell_line_closure=FF:0100353,FF:0101120,FF:0102424
|fonse_cell_line_closure=FF:0100353,FF:0101120,FF:0102424
Line 34: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H226.CNhs13062.10846-111E9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H226.CNhs13062.10846-111E9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H226.CNhs13062.10846-111E9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H226.CNhs13062.10846-111E9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H226.CNhs13062.10846-111E9.hg38.nobarcode.ctss.bed.gz
|id=FF:10846-111E9
|id=FF:10846-111E9
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102424;;FF:0103008
|is_a=EFO:0002091;;FF:0000210;;FF:0102424;;FF:0103008
|is_obsolete=
|library_id=CNhs13062
|library_id_phase_based=2:CNhs13062
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10846
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10846
|name=mesothelioma cell line:NCI-H226
|name=mesothelioma cell line:NCI-H226
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13062,LSID1000,release012,COMPLETED
|profile_hcage=CNhs13062,LSID1000,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.0383045747062242,0,0.23337009314277,0,0,-0.0186086742986449,0,-0.0771960702264343,0.120740471423198,0,0,0,0,0,0,0,0,0.0766091494124484,0,0,0,0,0.0449881840926374,0,0,0,0,0,-0.0213487468556091,0,0,0.238184868618258,0,0,0,0,0,0,0,0,0,0,0.333947629874311,0,-0.0160986173137039,0.0766091494124484,0,0,0.0766091494124484,0,0,0,0,0.0140895535933898,0,0,0,0,0,0,0,0.044716994545136,0,0,0.100967567227968,0,0,0,0,0,0,0,0,0.0766091494124484,0,0,0,0,0,0,0,0,0,0,0,0.112170204651854,0,0,0,0.198311194441065,0,0,0,-0.0584468268118252,0.114075474878721,0.0383045747062242,0.333947629874311,0.0383045747062242,0,-0.021426201825258,0.0315330743135078,0,0,0,0.0766091494124484,0,0,0,0,0,0,0,0,0,0,0,0,0,0.050260181158296,0.0766091494124484,0,0,-0.0198900568512196,-0.135962988208269,0,0,0.0766091494124484,0,0,0
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|rna_box=111
|rna_box=111
|rna_catalog_number=
|rna_catalog_number=
Line 53: Line 75:
|rna_rin=
|rna_rin=
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=111E9
|rna_tube_id=1.11E+11
|rna_weight_ug=117.5865
|rna_weight_ug=117.5865
|sample_age=unknown
|sample_age=unknown
|sample_category=cell lines
|sample_cell_catalog=CRL5826
|sample_cell_catalog=CRL5826
|sample_cell_line=NCI-H226
|sample_cell_line=NCI-H226
Line 68: Line 91:
|sample_ethnicity=unknown
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.21170424464932e-247!GO:0043226;organelle;2.42554872623883e-201!GO:0043229;intracellular organelle;8.22587694719727e-201!GO:0043231;intracellular membrane-bound organelle;1.05559427083326e-194!GO:0043227;membrane-bound organelle;1.38882607697614e-194!GO:0005737;cytoplasm;2.15143766085224e-181!GO:0044422;organelle part;5.04585944317993e-158!GO:0044446;intracellular organelle part;2.10344392932573e-156!GO:0044444;cytoplasmic part;7.7652173953774e-128!GO:0032991;macromolecular complex;8.8548374516603e-112!GO:0030529;ribonucleoprotein complex;2.83682855453855e-98!GO:0044237;cellular metabolic process;4.55628389946672e-90!GO:0044238;primary metabolic process;9.24230028968095e-90!GO:0043170;macromolecule metabolic process;1.7460957691463e-86!GO:0005634;nucleus;1.02397977743456e-83!GO:0005515;protein binding;3.84120108066274e-82!GO:0003723;RNA binding;2.43297104109323e-79!GO:0044428;nuclear part;8.96523472453037e-78!GO:0043233;organelle lumen;1.54540124116063e-75!GO:0031974;membrane-enclosed lumen;1.54540124116063e-75!GO:0005739;mitochondrion;8.5148711800317e-65!GO:0005840;ribosome;5.47343762983616e-59!GO:0006412;translation;1.10125244261229e-56!GO:0006396;RNA processing;2.25205545768728e-56!GO:0043234;protein complex;1.39471208296495e-55!GO:0019538;protein metabolic process;1.56432152312402e-55!GO:0016043;cellular component organization and biogenesis;1.45148699868375e-54!GO:0031090;organelle membrane;6.04676768843949e-52!GO:0003735;structural constituent of ribosome;1.02165399009402e-51!GO:0043283;biopolymer metabolic process;3.01859996140125e-49!GO:0044267;cellular protein metabolic process;1.61055557711801e-48!GO:0044260;cellular macromolecule metabolic process;3.29078060518805e-48!GO:0033036;macromolecule localization;3.23262947203494e-46!GO:0031981;nuclear lumen;5.45371260353843e-46!GO:0015031;protein transport;6.79691779942253e-46!GO:0033279;ribosomal subunit;1.91056372885488e-44!GO:0044429;mitochondrial part;6.32742732881171e-44!GO:0043228;non-membrane-bound organelle;8.95235279375847e-44!GO:0043232;intracellular non-membrane-bound organelle;8.95235279375847e-44!GO:0044249;cellular biosynthetic process;1.70151134736177e-43!GO:0009058;biosynthetic process;4.48178962795811e-43!GO:0008104;protein localization;1.69649246918935e-42!GO:0045184;establishment of protein localization;2.62489528024718e-42!GO:0005829;cytosol;7.46042903581008e-42!GO:0010467;gene expression;7.46042903581008e-42!GO:0009059;macromolecule biosynthetic process;7.89029067763187e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.82106168610575e-41!GO:0016071;mRNA metabolic process;1.20530610599286e-40!GO:0031967;organelle envelope;2.72786747892075e-40!GO:0031975;envelope;6.67588899235879e-40!GO:0008380;RNA splicing;8.97537599523781e-39!GO:0006996;organelle organization and biogenesis;3.35693816930875e-37!GO:0046907;intracellular transport;4.5156379419987e-37!GO:0006397;mRNA processing;9.86136616119034e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.00311576334377e-36!GO:0065003;macromolecular complex assembly;8.46451024439395e-36!GO:0006259;DNA metabolic process;8.11119550426091e-35!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.70637816310294e-33!GO:0022607;cellular component assembly;2.69784991010325e-32!GO:0006886;intracellular protein transport;4.64844119045596e-31!GO:0007049;cell cycle;1.716738716172e-29!GO:0000166;nucleotide binding;1.28078157156806e-28!GO:0005740;mitochondrial envelope;2.52288399509853e-27!GO:0005681;spliceosome;3.01008438787961e-27!GO:0044445;cytosolic part;6.13455486398649e-27!GO:0005654;nucleoplasm;6.8364172288802e-27!GO:0031966;mitochondrial membrane;1.93576828467781e-25!GO:0003676;nucleic acid binding;3.47359641358773e-25!GO:0019866;organelle inner membrane;6.09477785783537e-25!GO:0051649;establishment of cellular localization;9.17696676823802e-24!GO:0000278;mitotic cell cycle;9.45945326562565e-24!GO:0012505;endomembrane system;1.58232385333496e-23!GO:0022402;cell cycle process;1.66443388559997e-23!GO:0051641;cellular localization;2.81578738400012e-23!GO:0015934;large ribosomal subunit;3.84455876217771e-23!GO:0005743;mitochondrial inner membrane;4.28790339231582e-23!GO:0016462;pyrophosphatase activity;4.72517090734793e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.49095513138471e-23!GO:0017111;nucleoside-triphosphatase activity;7.13762448944296e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;8.72855221062348e-23!GO:0015935;small ribosomal subunit;2.07007978906589e-22!GO:0006119;oxidative phosphorylation;3.05413625172942e-22!GO:0044451;nucleoplasm part;1.92943370854072e-21!GO:0006974;response to DNA damage stimulus;2.18569469140163e-21!GO:0005730;nucleolus;3.74044958958093e-21!GO:0022618;protein-RNA complex assembly;2.96869446676422e-20!GO:0032553;ribonucleotide binding;3.40051938422744e-20!GO:0032555;purine ribonucleotide binding;3.40051938422744e-20!GO:0031980;mitochondrial lumen;8.26144439086945e-20!GO:0005759;mitochondrial matrix;8.26144439086945e-20!GO:0017076;purine nucleotide binding;1.25031165861603e-19!GO:0016874;ligase activity;1.76578076320965e-19!GO:0044455;mitochondrial membrane part;1.79086588542405e-19!GO:0005694;chromosome;1.87280858725479e-19!GO:0006457;protein folding;2.21715876113477e-19!GO:0000502;proteasome complex (sensu Eukaryota);8.11822089308691e-19!GO:0005524;ATP binding;1.32120096374237e-18!GO:0006281;DNA repair;1.42225423368106e-18!GO:0044427;chromosomal part;1.69568422930172e-18!GO:0032559;adenyl ribonucleotide binding;4.30619626677629e-18!GO:0000087;M phase of mitotic cell cycle;5.65889990105302e-18!GO:0007067;mitosis;1.04517141971918e-17!GO:0005783;endoplasmic reticulum;1.41397249721451e-17!GO:0022403;cell cycle phase;2.0892729304731e-17!GO:0044265;cellular macromolecule catabolic process;2.0892729304731e-17!GO:0030554;adenyl nucleotide binding;2.52270373986397e-17!GO:0042254;ribosome biogenesis and assembly;6.95834106732044e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.58971520953391e-17!GO:0016070;RNA metabolic process;7.92637458592829e-17!GO:0043285;biopolymer catabolic process;8.49139454012933e-17!GO:0006512;ubiquitin cycle;8.49139454012933e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;9.94613234820483e-17!GO:0019941;modification-dependent protein catabolic process;1.11271155275402e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.11271155275402e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.14512360456043e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.21939012853638e-16!GO:0044257;cellular protein catabolic process;2.05388940417401e-16!GO:0008135;translation factor activity, nucleic acid binding;2.41425864029781e-16!GO:0044432;endoplasmic reticulum part;5.03008059446783e-16!GO:0009057;macromolecule catabolic process;1.07559515059457e-15!GO:0005761;mitochondrial ribosome;1.18163643338862e-15!GO:0000313;organellar ribosome;1.18163643338862e-15!GO:0005746;mitochondrial respiratory chain;1.404556057403e-15!GO:0006260;DNA replication;1.57875338194149e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.22510532661845e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.30291905642833e-15!GO:0000375;RNA splicing, via transesterification reactions;2.30291905642833e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.30291905642833e-15!GO:0030163;protein catabolic process;2.55239251339309e-15!GO:0051301;cell division;2.99118186652759e-15!GO:0006605;protein targeting;4.48408971486601e-15!GO:0048770;pigment granule;6.39623140299147e-15!GO:0042470;melanosome;6.39623140299147e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.25447040261501e-14!GO:0003954;NADH dehydrogenase activity;1.25447040261501e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.25447040261501e-14!GO:0008134;transcription factor binding;1.5237009914533e-14!GO:0044453;nuclear membrane part;2.79836663188368e-14!GO:0005794;Golgi apparatus;3.15206250976112e-14!GO:0051276;chromosome organization and biogenesis;3.15674168922731e-14!GO:0043412;biopolymer modification;3.63889407228005e-14!GO:0000279;M phase;5.13013728670439e-14!GO:0048193;Golgi vesicle transport;5.68125277489718e-14!GO:0009719;response to endogenous stimulus;7.00049052192698e-14!GO:0042623;ATPase activity, coupled;1.00963967202649e-13!GO:0051082;unfolded protein binding;1.1089959233057e-13!GO:0016887;ATPase activity;1.47138293122142e-13!GO:0005635;nuclear envelope;2.63735674965987e-13!GO:0031965;nuclear membrane;4.09854948116074e-13!GO:0003743;translation initiation factor activity;4.4534576766942e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.87844198488281e-13!GO:0042773;ATP synthesis coupled electron transport;4.87844198488281e-13!GO:0044248;cellular catabolic process;5.17578318119485e-13!GO:0051186;cofactor metabolic process;5.47255361311465e-13!GO:0000074;regulation of progression through cell cycle;7.74644776099702e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.57991226743093e-13!GO:0045271;respiratory chain complex I;8.57991226743093e-13!GO:0005747;mitochondrial respiratory chain complex I;8.57991226743093e-13!GO:0016192;vesicle-mediated transport;9.43052488974166e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.00748012082123e-12!GO:0051726;regulation of cell cycle;1.03750038557886e-12!GO:0006399;tRNA metabolic process;1.07209709070505e-12!GO:0006413;translational initiation;1.47758856263285e-12!GO:0012501;programmed cell death;1.66681251678915e-12!GO:0006464;protein modification process;1.69762364340117e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.40205111888239e-12!GO:0006915;apoptosis;3.33245985807598e-12!GO:0005789;endoplasmic reticulum membrane;4.61381179912729e-12!GO:0005643;nuclear pore;1.0984192637939e-11!GO:0004386;helicase activity;1.36135831690047e-11!GO:0006364;rRNA processing;1.82969002570545e-11!GO:0016072;rRNA metabolic process;2.80075865360029e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.80075865360029e-11!GO:0008026;ATP-dependent helicase activity;3.61363927757147e-11!GO:0016604;nuclear body;5.35350670153487e-11!GO:0008219;cell death;5.93319670717772e-11!GO:0016265;death;5.93319670717772e-11!GO:0006913;nucleocytoplasmic transport;6.05081518641041e-11!GO:0043687;post-translational protein modification;1.00636961779524e-10!GO:0006461;protein complex assembly;1.22124845122973e-10!GO:0065002;intracellular protein transport across a membrane;1.40855213016713e-10!GO:0051169;nuclear transport;1.40855213016713e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.45407420682599e-10!GO:0009259;ribonucleotide metabolic process;1.53319339902334e-10!GO:0008639;small protein conjugating enzyme activity;3.14040194004096e-10!GO:0006446;regulation of translational initiation;4.25503246555344e-10!GO:0006323;DNA packaging;4.34377529178294e-10!GO:0046930;pore complex;4.89871099349736e-10!GO:0006732;coenzyme metabolic process;5.57497224863941e-10!GO:0000785;chromatin;5.67961731584791e-10!GO:0050657;nucleic acid transport;5.81505840695518e-10!GO:0051236;establishment of RNA localization;5.81505840695518e-10!GO:0050658;RNA transport;5.81505840695518e-10!GO:0006163;purine nucleotide metabolic process;6.09580372084607e-10!GO:0006403;RNA localization;6.1986503381645e-10!GO:0008565;protein transporter activity;7.86962313837977e-10!GO:0004842;ubiquitin-protein ligase activity;7.90183669538733e-10!GO:0009055;electron carrier activity;9.82997331730099e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.66598954350097e-09!GO:0009260;ribonucleotide biosynthetic process;1.72842168321658e-09!GO:0006164;purine nucleotide biosynthetic process;1.75424508692924e-09!GO:0019787;small conjugating protein ligase activity;2.05151705677117e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.37167918796678e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.37167918796678e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.37167918796678e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.37167918796678e-09!GO:0009150;purine ribonucleotide metabolic process;2.60171849115767e-09!GO:0003712;transcription cofactor activity;3.24482415309589e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.06239524759898e-09!GO:0065004;protein-DNA complex assembly;4.21026666489505e-09!GO:0043038;amino acid activation;5.12617433133097e-09!GO:0006418;tRNA aminoacylation for protein translation;5.12617433133097e-09!GO:0043039;tRNA aminoacylation;5.12617433133097e-09!GO:0009152;purine ribonucleotide biosynthetic process;7.23338931054122e-09!GO:0043067;regulation of programmed cell death;8.98956135002186e-09!GO:0003697;single-stranded DNA binding;9.47433913839178e-09!GO:0006366;transcription from RNA polymerase II promoter;9.70120088431711e-09!GO:0042981;regulation of apoptosis;9.92956346668023e-09!GO:0015986;ATP synthesis coupled proton transport;1.63552518110564e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.63552518110564e-08!GO:0048523;negative regulation of cellular process;2.09942005526497e-08!GO:0016607;nuclear speck;2.10067924474465e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.18442764163386e-08!GO:0006333;chromatin assembly or disassembly;2.61285466812932e-08!GO:0048475;coated membrane;2.66463668396159e-08!GO:0030117;membrane coat;2.66463668396159e-08!GO:0009141;nucleoside triphosphate metabolic process;2.73240745091829e-08!GO:0007005;mitochondrion organization and biogenesis;2.76711976732711e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.90238222091731e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.90238222091731e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.91998082351121e-08!GO:0051028;mRNA transport;3.96936195994327e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.10885357009982e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.10885357009982e-08!GO:0043566;structure-specific DNA binding;4.46397562513264e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.75114167475496e-08!GO:0016779;nucleotidyltransferase activity;4.82361496853882e-08!GO:0005839;proteasome core complex (sensu Eukaryota);4.85258692621843e-08!GO:0017038;protein import;4.92589629431329e-08!GO:0016881;acid-amino acid ligase activity;5.0695268172286e-08!GO:0005793;ER-Golgi intermediate compartment;5.32106494180753e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.53535665424861e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.53535665424861e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.53620182031116e-08!GO:0015630;microtubule cytoskeleton;5.72022280885058e-08!GO:0030120;vesicle coat;6.63416237833967e-08!GO:0030662;coated vesicle membrane;6.63416237833967e-08!GO:0050794;regulation of cellular process;6.85979221843875e-08!GO:0051188;cofactor biosynthetic process;8.59251036933866e-08!GO:0005768;endosome;1.0737701540841e-07!GO:0009060;aerobic respiration;1.2032139576629e-07!GO:0009056;catabolic process;1.2032139576629e-07!GO:0043069;negative regulation of programmed cell death;1.39507289189913e-07!GO:0000775;chromosome, pericentric region;1.6268902312862e-07!GO:0046034;ATP metabolic process;2.18662812507674e-07!GO:0006754;ATP biosynthetic process;2.28301759150566e-07!GO:0006753;nucleoside phosphate metabolic process;2.28301759150566e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.31280857262971e-07!GO:0016740;transferase activity;2.70616062012262e-07!GO:0019829;cation-transporting ATPase activity;3.00548317951579e-07!GO:0043066;negative regulation of apoptosis;3.16592270449618e-07!GO:0005819;spindle;4.10162784259591e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.33433695595777e-07!GO:0044431;Golgi apparatus part;4.33433695595777e-07!GO:0004298;threonine endopeptidase activity;4.55449669286532e-07!GO:0006916;anti-apoptosis;4.89938484066125e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.91083642406229e-07!GO:0000245;spliceosome assembly;4.91083642406229e-07!GO:0048519;negative regulation of biological process;5.13400842818022e-07!GO:0051329;interphase of mitotic cell cycle;6.76263489587969e-07!GO:0051325;interphase;7.85842237502771e-07!GO:0007051;spindle organization and biogenesis;8.80009147481455e-07!GO:0043623;cellular protein complex assembly;9.45594733881867e-07!GO:0003924;GTPase activity;9.82401600795423e-07!GO:0051246;regulation of protein metabolic process;1.03324748704347e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.23432970179879e-06!GO:0045333;cellular respiration;1.2812209348375e-06!GO:0032446;protein modification by small protein conjugation;1.43888527653193e-06!GO:0016567;protein ubiquitination;1.52768811310606e-06!GO:0016568;chromatin modification;1.55799128486914e-06!GO:0045259;proton-transporting ATP synthase complex;1.94976887917557e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.12033899697081e-06!GO:0009117;nucleotide metabolic process;2.16721248628781e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.21022516618533e-06!GO:0006793;phosphorus metabolic process;2.42640239419938e-06!GO:0006796;phosphate metabolic process;2.42640239419938e-06!GO:0009108;coenzyme biosynthetic process;2.77675279439116e-06!GO:0005667;transcription factor complex;3.22198067445294e-06!GO:0045786;negative regulation of progression through cell cycle;3.82014953660895e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.9013338453524e-06!GO:0044440;endosomal part;4.08091885040618e-06!GO:0010008;endosome membrane;4.08091885040618e-06!GO:0003724;RNA helicase activity;4.37285665450462e-06!GO:0006261;DNA-dependent DNA replication;4.46740926458751e-06!GO:0016310;phosphorylation;4.4838798365108e-06!GO:0006334;nucleosome assembly;5.20958747117264e-06!GO:0006752;group transfer coenzyme metabolic process;5.41264749135851e-06!GO:0031988;membrane-bound vesicle;5.56637141862378e-06!GO:0005813;centrosome;5.90675574029252e-06!GO:0016787;hydrolase activity;6.04301945317905e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.88206395488326e-06!GO:0006099;tricarboxylic acid cycle;7.96180573807586e-06!GO:0046356;acetyl-CoA catabolic process;7.96180573807586e-06!GO:0016853;isomerase activity;8.55018261978596e-06!GO:0005762;mitochondrial large ribosomal subunit;9.92484895568124e-06!GO:0000315;organellar large ribosomal subunit;9.92484895568124e-06!GO:0005657;replication fork;1.12905807222954e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.16054078135995e-05!GO:0005815;microtubule organizing center;1.28574180702378e-05!GO:0000075;cell cycle checkpoint;1.36382698622689e-05!GO:0031497;chromatin assembly;1.43763359976076e-05!GO:0000139;Golgi membrane;1.5766366182727e-05!GO:0006084;acetyl-CoA metabolic process;1.59586290154136e-05!GO:0005788;endoplasmic reticulum lumen;1.7247083663325e-05!GO:0005798;Golgi-associated vesicle;1.73459698373812e-05!GO:0051427;hormone receptor binding;1.86308707208049e-05!GO:0006613;cotranslational protein targeting to membrane;2.03192938973039e-05!GO:0003714;transcription corepressor activity;2.04004517689147e-05!GO:0000151;ubiquitin ligase complex;2.09313578573337e-05!GO:0051170;nuclear import;2.14303339985598e-05!GO:0003899;DNA-directed RNA polymerase activity;2.42778039036889e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.44049983130191e-05!GO:0051187;cofactor catabolic process;2.84553091537106e-05!GO:0016491;oxidoreductase activity;3.26413191031584e-05!GO:0051168;nuclear export;3.77008729242415e-05!GO:0006606;protein import into nucleus;3.77207716396984e-05!GO:0007010;cytoskeleton organization and biogenesis;4.11091052938711e-05!GO:0035257;nuclear hormone receptor binding;4.21955835035572e-05!GO:0016564;transcription repressor activity;4.93651700984018e-05!GO:0008033;tRNA processing;5.46793236868241e-05!GO:0050789;regulation of biological process;5.96099298591071e-05!GO:0048522;positive regulation of cellular process;6.58402341375892e-05!GO:0044452;nucleolar part;6.64654460794689e-05!GO:0009109;coenzyme catabolic process;6.67657883073129e-05!GO:0031252;leading edge;6.68755429064933e-05!GO:0019843;rRNA binding;6.99142189330995e-05!GO:0006612;protein targeting to membrane;7.81660208430401e-05!GO:0000314;organellar small ribosomal subunit;8.28681394001757e-05!GO:0005763;mitochondrial small ribosomal subunit;8.28681394001757e-05!GO:0030867;rough endoplasmic reticulum membrane;8.82515772722471e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.85495560342598e-05!GO:0031982;vesicle;9.80934392438579e-05!GO:0005525;GTP binding;0.000111016415630605!GO:0003713;transcription coactivator activity;0.000112023715689147!GO:0043021;ribonucleoprotein binding;0.000116605253852573!GO:0003682;chromatin binding;0.000119015556911842!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000122573423042237!GO:0031410;cytoplasmic vesicle;0.000134022016650856!GO:0005770;late endosome;0.000138358069187993!GO:0008654;phospholipid biosynthetic process;0.000145831967605055!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000146422773096018!GO:0006302;double-strand break repair;0.000154475022759992!GO:0006414;translational elongation;0.000157008032982719!GO:0007088;regulation of mitosis;0.000157022027571473!GO:0008094;DNA-dependent ATPase activity;0.000158716604129865!GO:0051789;response to protein stimulus;0.00017367827914322!GO:0006986;response to unfolded protein;0.00017367827914322!GO:0019899;enzyme binding;0.000191702741110375!GO:0008186;RNA-dependent ATPase activity;0.000192725886103583!GO:0045454;cell redox homeostasis;0.000203623963840864!GO:0016563;transcription activator activity;0.000207315357947894!GO:0016363;nuclear matrix;0.000251577634547894!GO:0007059;chromosome segregation;0.000251577634547894!GO:0031324;negative regulation of cellular metabolic process;0.000262706048203726!GO:0006626;protein targeting to mitochondrion;0.000267576434931566!GO:0000776;kinetochore;0.000271482747624403!GO:0016859;cis-trans isomerase activity;0.00029439881328519!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000301488090165762!GO:0030036;actin cytoskeleton organization and biogenesis;0.000314461620606769!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000315318433574874!GO:0005769;early endosome;0.000325900902252364!GO:0003690;double-stranded DNA binding;0.00032781622189176!GO:0005905;coated pit;0.000338987624698972!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000339171539560863!GO:0033116;ER-Golgi intermediate compartment membrane;0.000339171539560863!GO:0016044;membrane organization and biogenesis;0.000340211702076892!GO:0003729;mRNA binding;0.000340553261050257!GO:0005048;signal sequence binding;0.000373089873618367!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000389308908833062!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000396438758719655!GO:0005885;Arp2/3 protein complex;0.00045138872266114!GO:0003684;damaged DNA binding;0.00046642247531519!GO:0001726;ruffle;0.000467913313451942!GO:0004004;ATP-dependent RNA helicase activity;0.000523558188689238!GO:0007093;mitotic cell cycle checkpoint;0.000525248701093417!GO:0043681;protein import into mitochondrion;0.000556989256679384!GO:0008250;oligosaccharyl transferase complex;0.000579154864222877!GO:0000082;G1/S transition of mitotic cell cycle;0.000608633496152007!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000608633496152007!GO:0015399;primary active transmembrane transporter activity;0.000608633496152007!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000655863366230959!GO:0030659;cytoplasmic vesicle membrane;0.000682712781232832!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000685235196904601!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000710443474090663!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000795453219253007!GO:0006310;DNA recombination;0.000822671925278236!GO:0032561;guanyl ribonucleotide binding;0.000828616380418481!GO:0019001;guanyl nucleotide binding;0.000828616380418481!GO:0005684;U2-dependent spliceosome;0.000873202441186112!GO:0007052;mitotic spindle organization and biogenesis;0.000886868173242558!GO:0006091;generation of precursor metabolites and energy;0.000888275360212521!GO:0030118;clathrin coat;0.000958089885108939!GO:0007006;mitochondrial membrane organization and biogenesis;0.000958396646394771!GO:0018196;peptidyl-asparagine modification;0.000958396646394771!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000958396646394771!GO:0004576;oligosaccharyl transferase activity;0.000963963515684887!GO:0006383;transcription from RNA polymerase III promoter;0.000991669399083187!GO:0015980;energy derivation by oxidation of organic compounds;0.00100029153553218!GO:0031968;organelle outer membrane;0.00105065597735946!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00106152632646141!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00106152632646141!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00106152632646141!GO:0030663;COPI coated vesicle membrane;0.00119689000375844!GO:0030126;COPI vesicle coat;0.00119689000375844!GO:0004674;protein serine/threonine kinase activity;0.00123726172738936!GO:0005773;vacuole;0.00124329169515242!GO:0019867;outer membrane;0.0012449567754948!GO:0005874;microtubule;0.00132569515075932!GO:0044433;cytoplasmic vesicle part;0.00135712377321049!GO:0009892;negative regulation of metabolic process;0.00139333035650029!GO:0048471;perinuclear region of cytoplasm;0.0014404573902429!GO:0051252;regulation of RNA metabolic process;0.0014404573902429!GO:0009165;nucleotide biosynthetic process;0.00144736833258471!GO:0006839;mitochondrial transport;0.00145546169409057!GO:0007243;protein kinase cascade;0.00148618765324219!GO:0030132;clathrin coat of coated pit;0.00149740689817446!GO:0006401;RNA catabolic process;0.00151629318544165!GO:0042802;identical protein binding;0.00154375997164886!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00155226417119295!GO:0030029;actin filament-based process;0.00155699470048227!GO:0000786;nucleosome;0.00163492517386372!GO:0030137;COPI-coated vesicle;0.00166267928144141!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0016746031876212!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00168562285997643!GO:0003678;DNA helicase activity;0.00172987866888385!GO:0006352;transcription initiation;0.00175570094271958!GO:0006402;mRNA catabolic process;0.00186531129306179!GO:0005791;rough endoplasmic reticulum;0.00199469383665128!GO:0012506;vesicle membrane;0.00221654618878327!GO:0016272;prefoldin complex;0.00223346644443713!GO:0043284;biopolymer biosynthetic process;0.00224572133028424!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00228732987053831!GO:0000059;protein import into nucleus, docking;0.00253408279345215!GO:0030658;transport vesicle membrane;0.00254591181707492!GO:0048518;positive regulation of biological process;0.00274159221725827!GO:0019222;regulation of metabolic process;0.00276218829298227!GO:0035258;steroid hormone receptor binding;0.00285259375756654!GO:0006891;intra-Golgi vesicle-mediated transport;0.00293001482022704!GO:0016481;negative regulation of transcription;0.00300779197538954!GO:0007050;cell cycle arrest;0.00303519787841998!GO:0048487;beta-tubulin binding;0.00304566106551845!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00310034719090615!GO:0051920;peroxiredoxin activity;0.00310516791792817!GO:0008632;apoptotic program;0.00313376188413362!GO:0008022;protein C-terminus binding;0.00321243279033077!GO:0000049;tRNA binding;0.0033982456518223!GO:0031901;early endosome membrane;0.00341394226066087!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00363087447473861!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00363087447473861!GO:0008637;apoptotic mitochondrial changes;0.00367832267561304!GO:0030880;RNA polymerase complex;0.00371017887170339!GO:0030119;AP-type membrane coat adaptor complex;0.00379239558979539!GO:0008139;nuclear localization sequence binding;0.00386366824727416!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00391886613317603!GO:0003711;transcription elongation regulator activity;0.00391886613317603!GO:0016197;endosome transport;0.00391886613317603!GO:0051540;metal cluster binding;0.00394009786278986!GO:0051536;iron-sulfur cluster binding;0.00394009786278986!GO:0006405;RNA export from nucleus;0.00394596018029337!GO:0048500;signal recognition particle;0.00400191366624875!GO:0043065;positive regulation of apoptosis;0.00405885194998145!GO:0005758;mitochondrial intermembrane space;0.00408948115313182!GO:0051052;regulation of DNA metabolic process;0.00412141804944098!GO:0030133;transport vesicle;0.00452811530589387!GO:0030134;ER to Golgi transport vesicle;0.00475337027548867!GO:0008180;signalosome;0.00475337027548867!GO:0008092;cytoskeletal protein binding;0.00475337027548867!GO:0065009;regulation of a molecular function;0.00480675405505144!GO:0043596;nuclear replication fork;0.00480675405505144!GO:0005876;spindle microtubule;0.0048756740560835!GO:0006144;purine base metabolic process;0.00491003823127789!GO:0006595;polyamine metabolic process;0.00495998474608697!GO:0030660;Golgi-associated vesicle membrane;0.00515186853171725!GO:0043068;positive regulation of programmed cell death;0.00544902452498577!GO:0003746;translation elongation factor activity;0.00550732508187414!GO:0007017;microtubule-based process;0.00552678059067393!GO:0008361;regulation of cell size;0.00558654383886092!GO:0006611;protein export from nucleus;0.0056338442860507!GO:0006509;membrane protein ectodomain proteolysis;0.005660888471398!GO:0033619;membrane protein proteolysis;0.005660888471398!GO:0031072;heat shock protein binding;0.00570748403066153!GO:0015992;proton transport;0.00570793578507698!GO:0043488;regulation of mRNA stability;0.00577196974004665!GO:0043487;regulation of RNA stability;0.00577196974004665!GO:0046467;membrane lipid biosynthetic process;0.00603563280577905!GO:0006818;hydrogen transport;0.00615741953264377!GO:0030131;clathrin adaptor complex;0.00646616090827615!GO:0048468;cell development;0.00646688238090777!GO:0016251;general RNA polymerase II transcription factor activity;0.00646688238090777!GO:0051087;chaperone binding;0.00646688238090777!GO:0017166;vinculin binding;0.00650734187463764!GO:0043492;ATPase activity, coupled to movement of substances;0.0065185372819861!GO:0000339;RNA cap binding;0.00653086997485824!GO:0000323;lytic vacuole;0.00653086997485824!GO:0005764;lysosome;0.00653086997485824!GO:0005741;mitochondrial outer membrane;0.00664328374926893!GO:0015631;tubulin binding;0.00673141459159513!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00684972268356225!GO:0000428;DNA-directed RNA polymerase complex;0.00684972268356225!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00693308192403764!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00709610838289296!GO:0046489;phosphoinositide biosynthetic process;0.00718489079941605!GO:0046474;glycerophospholipid biosynthetic process;0.00723868945821213!GO:0030521;androgen receptor signaling pathway;0.00728366384232922!GO:0008312;7S RNA binding;0.00733396141313624!GO:0006284;base-excision repair;0.00751998448477092!GO:0043624;cellular protein complex disassembly;0.00763484163603643!GO:0032508;DNA duplex unwinding;0.00764660230415322!GO:0032392;DNA geometric change;0.00764660230415322!GO:0016741;transferase activity, transferring one-carbon groups;0.00769352485677734!GO:0043022;ribosome binding;0.00781483062271772!GO:0031970;organelle envelope lumen;0.00790870708349113!GO:0016301;kinase activity;0.00796492912173934!GO:0007346;regulation of progression through mitotic cell cycle;0.00809536789266315!GO:0006289;nucleotide-excision repair;0.0081429225598625!GO:0016049;cell growth;0.00818271277019926!GO:0005637;nuclear inner membrane;0.00851632921591125!GO:0005832;chaperonin-containing T-complex;0.00916348943357515!GO:0008168;methyltransferase activity;0.00916348943357515!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00920206494701248!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.009755724614638!GO:0045047;protein targeting to ER;0.009755724614638!GO:0030125;clathrin vesicle coat;0.0100778999113168!GO:0030665;clathrin coated vesicle membrane;0.0100778999113168!GO:0030127;COPII vesicle coat;0.0103528928098007!GO:0012507;ER to Golgi transport vesicle membrane;0.0103528928098007!GO:0004527;exonuclease activity;0.0106761621504593!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0107138905678586!GO:0051539;4 iron, 4 sulfur cluster binding;0.011187939564917!GO:0009451;RNA modification;0.011433838393232!GO:0007264;small GTPase mediated signal transduction;0.0117686915487762!GO:0016126;sterol biosynthetic process;0.0120337391176277!GO:0030833;regulation of actin filament polymerization;0.0120509829781557!GO:0046483;heterocycle metabolic process;0.0123562894993331!GO:0006520;amino acid metabolic process;0.0123698509912188!GO:0031124;mRNA 3'-end processing;0.0125499675782284!GO:0006950;response to stress;0.0126469693600315!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0131217520996111!GO:0043130;ubiquitin binding;0.0133846704311801!GO:0032182;small conjugating protein binding;0.0133846704311801!GO:0009112;nucleobase metabolic process;0.0135432379492723!GO:0007040;lysosome organization and biogenesis;0.0136427330659206!GO:0006007;glucose catabolic process;0.0136763688637124!GO:0000792;heterochromatin;0.0140342947748457!GO:0008047;enzyme activator activity;0.0144155079550082!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0144774710328059!GO:0015002;heme-copper terminal oxidase activity;0.0144774710328059!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0144774710328059!GO:0004129;cytochrome-c oxidase activity;0.0144774710328059!GO:0050681;androgen receptor binding;0.0148071089359194!GO:0030176;integral to endoplasmic reticulum membrane;0.0149358101875495!GO:0004003;ATP-dependent DNA helicase activity;0.0151047516746549!GO:0009116;nucleoside metabolic process;0.0151171858606436!GO:0004518;nuclease activity;0.0153616243647087!GO:0007033;vacuole organization and biogenesis;0.0154821683616952!GO:0046519;sphingoid metabolic process;0.0156708388077437!GO:0005862;muscle thin filament tropomyosin;0.0157605840890886!GO:0006740;NADPH regeneration;0.0158947840128294!GO:0006098;pentose-phosphate shunt;0.0158947840128294!GO:0006695;cholesterol biosynthetic process;0.0161370773278128!GO:0008538;proteasome activator activity;0.0162468927516325!GO:0006268;DNA unwinding during replication;0.0164558381049955!GO:0006497;protein amino acid lipidation;0.0164576597265829!GO:0000096;sulfur amino acid metabolic process;0.0165071884214171!GO:0051348;negative regulation of transferase activity;0.0166042244156858!GO:0032200;telomere organization and biogenesis;0.0166334241978092!GO:0000723;telomere maintenance;0.0166334241978092!GO:0008610;lipid biosynthetic process;0.0167725700363351!GO:0042393;histone binding;0.0174936188473127!GO:0005869;dynactin complex;0.0175840188813367!GO:0000922;spindle pole;0.0177763549324364!GO:0005669;transcription factor TFIID complex;0.0178158340499886!GO:0001836;release of cytochrome c from mitochondria;0.018019315011451!GO:0008234;cysteine-type peptidase activity;0.018144216243511!GO:0033673;negative regulation of kinase activity;0.0184279358786341!GO:0006469;negative regulation of protein kinase activity;0.0184279358786341!GO:0032984;macromolecular complex disassembly;0.0191616949992856!GO:0006672;ceramide metabolic process;0.0191826285916348!GO:0050662;coenzyme binding;0.0192520873621641!GO:0000228;nuclear chromosome;0.0202090139409692!GO:0043241;protein complex disassembly;0.0207331633842411!GO:0042770;DNA damage response, signal transduction;0.0211795828435221!GO:0043601;nuclear replisome;0.0213150990742555!GO:0030894;replisome;0.0213150990742555!GO:0004177;aminopeptidase activity;0.0214140654273274!GO:0000819;sister chromatid segregation;0.0218000954550019!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0219771313563372!GO:0001558;regulation of cell growth;0.0219838881678078!GO:0000209;protein polyubiquitination;0.0224019220443681!GO:0022415;viral reproductive process;0.0224683881772755!GO:0045045;secretory pathway;0.0225385013994027!GO:0030384;phosphoinositide metabolic process;0.0225855370521646!GO:0065007;biological regulation;0.0233645017387243!GO:0006778;porphyrin metabolic process;0.0233908831126244!GO:0033013;tetrapyrrole metabolic process;0.0233908831126244!GO:0046966;thyroid hormone receptor binding;0.0233908831126244!GO:0000070;mitotic sister chromatid segregation;0.0234350773356847!GO:0006650;glycerophospholipid metabolic process;0.0234350773356847!GO:0006897;endocytosis;0.0235430354715409!GO:0010324;membrane invagination;0.0235430354715409!GO:0006378;mRNA polyadenylation;0.0245236213699359!GO:0008287;protein serine/threonine phosphatase complex;0.0247243286704401!GO:0006376;mRNA splice site selection;0.0248983520195774!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0248983520195774!GO:0046822;regulation of nucleocytoplasmic transport;0.0253490859962442!GO:0051101;regulation of DNA binding;0.0253966795645115!GO:0030027;lamellipodium;0.0255452980374849!GO:0031625;ubiquitin protein ligase binding;0.0257693077485772!GO:0030031;cell projection biogenesis;0.0267074823975023!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0267461802254496!GO:0000086;G2/M transition of mitotic cell cycle;0.0268559018532325!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0269574207556866!GO:0016860;intramolecular oxidoreductase activity;0.0269574207556866!GO:0006220;pyrimidine nucleotide metabolic process;0.0277791029729704!GO:0000781;chromosome, telomeric region;0.0292891259463018!GO:0022890;inorganic cation transmembrane transporter activity;0.0294531874353972!GO:0000287;magnesium ion binding;0.0297699941622013!GO:0007021;tubulin folding;0.0301572048518549!GO:0035035;histone acetyltransferase binding;0.0303100164337615!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0303767544951291!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0305835610410519!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0308584773897423!GO:0005096;GTPase activator activity;0.0308921209501596!GO:0030518;steroid hormone receptor signaling pathway;0.0310415234023337!GO:0022406;membrane docking;0.0311987146381094!GO:0048278;vesicle docking;0.0311987146381094!GO:0031529;ruffle organization and biogenesis;0.0312395787180464!GO:0031570;DNA integrity checkpoint;0.0314435473202323!GO:0007004;telomere maintenance via telomerase;0.0315160817694625!GO:0003702;RNA polymerase II transcription factor activity;0.0320699354658805!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0320724441328659!GO:0006368;RNA elongation from RNA polymerase II promoter;0.032635485802867!GO:0048144;fibroblast proliferation;0.0327358720908517!GO:0048145;regulation of fibroblast proliferation;0.0327358720908517!GO:0006417;regulation of translation;0.0327724594576261!GO:0006892;post-Golgi vesicle-mediated transport;0.0331792344787334!GO:0005784;translocon complex;0.0331876536915633!GO:0030865;cortical cytoskeleton organization and biogenesis;0.033203443057874!GO:0043154;negative regulation of caspase activity;0.033203443057874!GO:0044262;cellular carbohydrate metabolic process;0.0348370512466335!GO:0009124;nucleoside monophosphate biosynthetic process;0.0349601772639538!GO:0009123;nucleoside monophosphate metabolic process;0.0349601772639538!GO:0045941;positive regulation of transcription;0.0349601772639538!GO:0019206;nucleoside kinase activity;0.0349664364089907!GO:0030496;midbody;0.0355246165148858!GO:0043189;H4/H2A histone acetyltransferase complex;0.0358427873090732!GO:0008601;protein phosphatase type 2A regulator activity;0.0365310356683443!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0372275373770123!GO:0009303;rRNA transcription;0.0373158602038737!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0373743650141032!GO:0051098;regulation of binding;0.0374668796351812!GO:0000910;cytokinesis;0.0375525709777045!GO:0030100;regulation of endocytosis;0.0376023474327918!GO:0035267;NuA4 histone acetyltransferase complex;0.0376196454233762!GO:0048146;positive regulation of fibroblast proliferation;0.0376261938676773!GO:0006904;vesicle docking during exocytosis;0.0380287030726559!GO:0044454;nuclear chromosome part;0.0391814405279677!GO:0042026;protein refolding;0.0394105237670062!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0397158724062328!GO:0010257;NADH dehydrogenase complex assembly;0.0397158724062328!GO:0033108;mitochondrial respiratory chain complex assembly;0.0397158724062328!GO:0045334;clathrin-coated endocytic vesicle;0.040279086749627!GO:0031123;RNA 3'-end processing;0.040443978086493!GO:0042168;heme metabolic process;0.040443978086493!GO:0016584;nucleosome positioning;0.0411262027313138!GO:0008320;protein transmembrane transporter activity;0.041596660387046!GO:0008017;microtubule binding;0.042344372600278!GO:0006275;regulation of DNA replication;0.042737615746729!GO:0042158;lipoprotein biosynthetic process;0.042737615746729!GO:0031902;late endosome membrane;0.0433467455202681!GO:0030503;regulation of cell redox homeostasis;0.0442210700777263!GO:0051059;NF-kappaB binding;0.0444303371199529!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0446151962708154!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0446151962708154!GO:0006400;tRNA modification;0.0448378700591164!GO:0006360;transcription from RNA polymerase I promoter;0.0449286604015092!GO:0006270;DNA replication initiation;0.0451255391901996!GO:0043414;biopolymer methylation;0.0454750422457716!GO:0008537;proteasome activator complex;0.0455891559168282!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0455891559168282!GO:0031371;ubiquitin conjugating enzyme complex;0.0455891559168282!GO:0000159;protein phosphatase type 2A complex;0.0458686283567807!GO:0032259;methylation;0.0458965981994245!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0466130962365565!GO:0016408;C-acyltransferase activity;0.0466595636673745!GO:0043433;negative regulation of transcription factor activity;0.0466595636673745!GO:0007034;vacuolar transport;0.0469250764456701!GO:0006506;GPI anchor biosynthetic process;0.0470776809079255!GO:0022884;macromolecule transmembrane transporter activity;0.0473738343557493!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0473738343557493!GO:0030911;TPR domain binding;0.0481113526261409!GO:0006917;induction of apoptosis;0.0482855474389711!GO:0008426;protein kinase C inhibitor activity;0.0487436241293416!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0491189260659225!GO:0045039;protein import into mitochondrial inner membrane;0.0491189260659225!GO:0008408;3'-5' exonuclease activity;0.0491229901250106!GO:0000725;recombinational repair;0.0494441655561627!GO:0000724;double-strand break repair via homologous recombination;0.0494441655561627!GO:0045792;negative regulation of cell size;0.0499937540663099
|sample_id=10846
|sample_id=10846
|sample_note=
|sample_note=
Line 75: Line 99:
|sample_tissue=mesothelium
|sample_tissue=mesothelium
|top_motifs=HSF1,2:1.98985094511;HOX{A5,B5}:1.86301108775;NKX3-1:1.72532960881;POU1F1:1.5634109366;AIRE:1.11593287869;ZNF384:1.09646882909;TOPORS:0.98712004631;TEAD1:0.930150283314;RXR{A,B,G}:0.921556097051;PAX4:0.904754811987;E2F1..5:0.888853556314;ZBTB16:0.87873673075;TFDP1:0.877905667106;TP53:0.857101168466;GZF1:0.831530214999;CDX1,2,4:0.816581627864;LMO2:0.813805410269;HOXA9_MEIS1:0.784189114117;bHLH_family:0.748638788974;FOXQ1:0.670976383005;NR1H4:0.659939706942;PAX5:0.62843463512;NR6A1:0.607112855618;PITX1..3:0.584802579015;XCPE1{core}:0.526615995012;STAT5{A,B}:0.523928359146;ELK1,4_GABP{A,B1}:0.498116882626;EN1,2:0.491165749357;UFEwm:0.486648308947;FOX{I1,J2}:0.455197294122;GATA4:0.428072408307;KLF4:0.422346020955;ARID5B:0.403220862089;ZBTB6:0.399200275106;MYB:0.397199693571;TFAP2B:0.343780482105;NFE2:0.328594414955;ZNF143:0.322677056269;OCT4_SOX2{dimer}:0.315979413926;GFI1B:0.314581842483;ONECUT1,2:0.267718707207;NKX3-2:0.262290097146;BACH2:0.255238151473;IKZF1:0.241820887267;HOX{A4,D4}:0.240309646491;FOXM1:0.231014870145;SNAI1..3:0.225239570423;NFE2L1:0.224633727783;NKX2-1,4:0.215785082043;FOS_FOS{B,L1}_JUN{B,D}:0.212671377514;CRX:0.206844171095;NR3C1:0.202632945497;LHX3,4:0.201917485823;MYOD1:0.196187432079;ZEB1:0.147737251712;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.13688114224;HES1:0.1360248995;VSX1,2:0.130935229838;TLX1..3_NFIC{dimer}:0.126703529579;GCM1,2:0.113107157289;TFCP2:0.112376193441;RXRA_VDR{dimer}:0.111265089742;SMAD1..7,9:0.100763531377;ZNF148:0.0925732231848;MZF1:0.0897095829374;PAX6:0.0845605238137;FOXP1:0.0843432925273;NFY{A,B,C}:0.0783535795646;DMAP1_NCOR{1,2}_SMARC:0.0674817860279;MAZ:0.0537702833388;EVI1:0.0535039107492;STAT2,4,6:0.0494702345764;TBX4,5:0.0393299798451;PBX1:0.0376059447238;BREu{core}:0.0331841226395;GFI1:0.0310241278484;EP300:0.0305683588119;GTF2I:0.0276117169462;HNF4A_NR2F1,2:0.0224278455946;FOXL1:0.020587385802;HLF:0.0180823504388;HMGA1,2:0.0130743891147;YY1:-0.0101354805754;MTE{core}:-0.0145364321702;TEF:-0.0283373457074;POU3F1..4:-0.0500878708872;ZIC1..3:-0.0591417378896;ESR1:-0.0688408996482;CDC5L:-0.0722637040142;CEBPA,B_DDIT3:-0.103823179116;STAT1,3:-0.107198912841;NANOG:-0.107998875869;NFKB1_REL_RELA:-0.10852197711;FOSL2:-0.109726306347;NKX2-2,8:-0.113187046824;ELF1,2,4:-0.133343807204;HNF1A:-0.135796543542;TBP:-0.149192975746;ALX1:-0.151513844351;IRF1,2:-0.16604302843;PPARG:-0.200300880994;POU5F1:-0.210382748103;SRF:-0.21683586415;MTF1:-0.216937586158;FOXP3:-0.220105507024;PRRX1,2:-0.22237917332;PAX3,7:-0.222444022553;PAX1,9:-0.225997580493;NR5A1,2:-0.233806409574;NRF1:-0.242803172116;POU2F1..3:-0.243248028859;SOX17:-0.247088990896;RREB1:-0.258153270078;EGR1..3:-0.287099983238;HIC1:-0.289382955507;AHR_ARNT_ARNT2:-0.290685517873;XBP1:-0.295378697725;GLI1..3:-0.295614166202;IRF7:-0.306760676537;HAND1,2:-0.34759620883;SOX2:-0.367098439698;ESRRA:-0.375514665399;NFIL3:-0.376097355461;GTF2A1,2:-0.38209590717;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.382379926245;RFX1:-0.389346929023;NFE2L2:-0.394149901749;ZNF423:-0.398581005753;RBPJ:-0.40459176142;NFATC1..3:-0.411305343448;SP1:-0.411318361227;IKZF2:-0.417641845891;ALX4:-0.420849030908;ADNP_IRX_SIX_ZHX:-0.424928980746;PAX8:-0.427477707091;GATA6:-0.432113542534;PAX2:-0.447338831011;POU6F1:-0.460410384553;CUX2:-0.468146075367;LEF1_TCF7_TCF7L1,2:-0.471877884508;HOX{A6,A7,B6,B7}:-0.47799339577;ETS1,2:-0.488597266604;SPZ1:-0.489316196687;SPI1:-0.505726998029;REST:-0.506558928554;SPIB:-0.512422628535;ZFP161:-0.521396272885;MAFB:-0.523281363319;T:-0.532536400985;TFAP2{A,C}:-0.544131628452;NFIX:-0.547535731638;FOXD3:-0.55958998832;MED-1{core}:-0.593246514774;MYBL2:-0.601576684299;FOXA2:-0.612332368824;NANOG{mouse}:-0.615409630078;EBF1:-0.617778403804;TLX2:-0.630991241507;PRDM1:-0.631252814517;AR:-0.641952704908;ATF4:-0.645637978656;RUNX1..3:-0.64933170972;FOXO1,3,4:-0.651467642624;SOX{8,9,10}:-0.674296649861;ATF5_CREB3:-0.674769159141;TGIF1:-0.703259804933;MEF2{A,B,C,D}:-0.747252485223;FOXN1:-0.781031201463;ZNF238:-0.802881192984;MYFfamily:-0.836687430526;NKX6-1,2:-0.865223131415;FOX{F1,F2,J1}:-0.883175513315;NHLH1,2:-0.887927555701;PATZ1:-0.903287793373;RFX2..5_RFXANK_RFXAP:-0.910073650016;SREBF1,2:-0.913529159682;HBP1_HMGB_SSRP1_UBTF:-0.936012952927;HIF1A:-0.95501725877;CREB1:-0.959516514954;ATF2:-0.96402632259;TAL1_TCF{3,4,12}:-1.05322721773;JUN:-1.07909975109;NKX2-3_NKX2-5:-1.0980856529;FOX{D1,D2}:-1.10106411326;DBP:-1.10877390694;ATF6:-1.2292900185;SOX5:-1.23396829998;RORA:-1.26165873044;HMX1:-1.39489631736;TFAP4:-1.51074680751;PDX1:-1.55333853689;BPTF:-2.04666776785
|top_motifs=HSF1,2:1.98985094511;HOX{A5,B5}:1.86301108775;NKX3-1:1.72532960881;POU1F1:1.5634109366;AIRE:1.11593287869;ZNF384:1.09646882909;TOPORS:0.98712004631;TEAD1:0.930150283314;RXR{A,B,G}:0.921556097051;PAX4:0.904754811987;E2F1..5:0.888853556314;ZBTB16:0.87873673075;TFDP1:0.877905667106;TP53:0.857101168466;GZF1:0.831530214999;CDX1,2,4:0.816581627864;LMO2:0.813805410269;HOXA9_MEIS1:0.784189114117;bHLH_family:0.748638788974;FOXQ1:0.670976383005;NR1H4:0.659939706942;PAX5:0.62843463512;NR6A1:0.607112855618;PITX1..3:0.584802579015;XCPE1{core}:0.526615995012;STAT5{A,B}:0.523928359146;ELK1,4_GABP{A,B1}:0.498116882626;EN1,2:0.491165749357;UFEwm:0.486648308947;FOX{I1,J2}:0.455197294122;GATA4:0.428072408307;KLF4:0.422346020955;ARID5B:0.403220862089;ZBTB6:0.399200275106;MYB:0.397199693571;TFAP2B:0.343780482105;NFE2:0.328594414955;ZNF143:0.322677056269;OCT4_SOX2{dimer}:0.315979413926;GFI1B:0.314581842483;ONECUT1,2:0.267718707207;NKX3-2:0.262290097146;BACH2:0.255238151473;IKZF1:0.241820887267;HOX{A4,D4}:0.240309646491;FOXM1:0.231014870145;SNAI1..3:0.225239570423;NFE2L1:0.224633727783;NKX2-1,4:0.215785082043;FOS_FOS{B,L1}_JUN{B,D}:0.212671377514;CRX:0.206844171095;NR3C1:0.202632945497;LHX3,4:0.201917485823;MYOD1:0.196187432079;ZEB1:0.147737251712;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.13688114224;HES1:0.1360248995;VSX1,2:0.130935229838;TLX1..3_NFIC{dimer}:0.126703529579;GCM1,2:0.113107157289;TFCP2:0.112376193441;RXRA_VDR{dimer}:0.111265089742;SMAD1..7,9:0.100763531377;ZNF148:0.0925732231848;MZF1:0.0897095829374;PAX6:0.0845605238137;FOXP1:0.0843432925273;NFY{A,B,C}:0.0783535795646;DMAP1_NCOR{1,2}_SMARC:0.0674817860279;MAZ:0.0537702833388;EVI1:0.0535039107492;STAT2,4,6:0.0494702345764;TBX4,5:0.0393299798451;PBX1:0.0376059447238;BREu{core}:0.0331841226395;GFI1:0.0310241278484;EP300:0.0305683588119;GTF2I:0.0276117169462;HNF4A_NR2F1,2:0.0224278455946;FOXL1:0.020587385802;HLF:0.0180823504388;HMGA1,2:0.0130743891147;YY1:-0.0101354805754;MTE{core}:-0.0145364321702;TEF:-0.0283373457074;POU3F1..4:-0.0500878708872;ZIC1..3:-0.0591417378896;ESR1:-0.0688408996482;CDC5L:-0.0722637040142;CEBPA,B_DDIT3:-0.103823179116;STAT1,3:-0.107198912841;NANOG:-0.107998875869;NFKB1_REL_RELA:-0.10852197711;FOSL2:-0.109726306347;NKX2-2,8:-0.113187046824;ELF1,2,4:-0.133343807204;HNF1A:-0.135796543542;TBP:-0.149192975746;ALX1:-0.151513844351;IRF1,2:-0.16604302843;PPARG:-0.200300880994;POU5F1:-0.210382748103;SRF:-0.21683586415;MTF1:-0.216937586158;FOXP3:-0.220105507024;PRRX1,2:-0.22237917332;PAX3,7:-0.222444022553;PAX1,9:-0.225997580493;NR5A1,2:-0.233806409574;NRF1:-0.242803172116;POU2F1..3:-0.243248028859;SOX17:-0.247088990896;RREB1:-0.258153270078;EGR1..3:-0.287099983238;HIC1:-0.289382955507;AHR_ARNT_ARNT2:-0.290685517873;XBP1:-0.295378697725;GLI1..3:-0.295614166202;IRF7:-0.306760676537;HAND1,2:-0.34759620883;SOX2:-0.367098439698;ESRRA:-0.375514665399;NFIL3:-0.376097355461;GTF2A1,2:-0.38209590717;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.382379926245;RFX1:-0.389346929023;NFE2L2:-0.394149901749;ZNF423:-0.398581005753;RBPJ:-0.40459176142;NFATC1..3:-0.411305343448;SP1:-0.411318361227;IKZF2:-0.417641845891;ALX4:-0.420849030908;ADNP_IRX_SIX_ZHX:-0.424928980746;PAX8:-0.427477707091;GATA6:-0.432113542534;PAX2:-0.447338831011;POU6F1:-0.460410384553;CUX2:-0.468146075367;LEF1_TCF7_TCF7L1,2:-0.471877884508;HOX{A6,A7,B6,B7}:-0.47799339577;ETS1,2:-0.488597266604;SPZ1:-0.489316196687;SPI1:-0.505726998029;REST:-0.506558928554;SPIB:-0.512422628535;ZFP161:-0.521396272885;MAFB:-0.523281363319;T:-0.532536400985;TFAP2{A,C}:-0.544131628452;NFIX:-0.547535731638;FOXD3:-0.55958998832;MED-1{core}:-0.593246514774;MYBL2:-0.601576684299;FOXA2:-0.612332368824;NANOG{mouse}:-0.615409630078;EBF1:-0.617778403804;TLX2:-0.630991241507;PRDM1:-0.631252814517;AR:-0.641952704908;ATF4:-0.645637978656;RUNX1..3:-0.64933170972;FOXO1,3,4:-0.651467642624;SOX{8,9,10}:-0.674296649861;ATF5_CREB3:-0.674769159141;TGIF1:-0.703259804933;MEF2{A,B,C,D}:-0.747252485223;FOXN1:-0.781031201463;ZNF238:-0.802881192984;MYFfamily:-0.836687430526;NKX6-1,2:-0.865223131415;FOX{F1,F2,J1}:-0.883175513315;NHLH1,2:-0.887927555701;PATZ1:-0.903287793373;RFX2..5_RFXANK_RFXAP:-0.910073650016;SREBF1,2:-0.913529159682;HBP1_HMGB_SSRP1_UBTF:-0.936012952927;HIF1A:-0.95501725877;CREB1:-0.959516514954;ATF2:-0.96402632259;TAL1_TCF{3,4,12}:-1.05322721773;JUN:-1.07909975109;NKX2-3_NKX2-5:-1.0980856529;FOX{D1,D2}:-1.10106411326;DBP:-1.10877390694;ATF6:-1.2292900185;SOX5:-1.23396829998;RORA:-1.26165873044;HMX1:-1.39489631736;TFAP4:-1.51074680751;PDX1:-1.55333853689;BPTF:-2.04666776785
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10846-111E9;search_select_hide=table117:FF:10846-111E9
}}
}}

Latest revision as of 15:09, 3 June 2020

Name:mesothelioma cell line:NCI-H226
Species:Human (Homo sapiens)
Library ID:CNhs13062
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
ageunknown
cell typemesothelial cell
cell lineNCI-H226
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004855
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13062 CAGE DRX007947 DRR008819
Accession ID Hg19

Library idBAMCTSS
CNhs13062 DRZ000244 DRZ001629
Accession ID Hg38

Library idBAMCTSS
CNhs13062 DRZ011594 DRZ012979
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.222
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.421
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.171
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0804
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0717
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0675
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0376
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0766
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.229
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00112
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0732
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.447
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.142
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0766
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.671
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0766
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13062

Jaspar motifP-value
MA0002.20.0714
MA0003.10.343
MA0004.10.798
MA0006.10.0844
MA0007.10.884
MA0009.10.94
MA0014.10.949
MA0017.10.857
MA0018.21.52024e-4
MA0019.10.252
MA0024.10.0384
MA0025.10.294
MA0027.10.852
MA0028.17.1718e-4
MA0029.10.111
MA0030.10.00415
MA0031.18.16404e-5
MA0035.20.0176
MA0038.10.565
MA0039.20.539
MA0040.10.196
MA0041.10.0667
MA0042.10.0617
MA0043.10.0132
MA0046.10.0379
MA0047.21.73417e-4
MA0048.10.00181
MA0050.10.159
MA0051.10.901
MA0052.14.65769e-4
MA0055.19.27713e-4
MA0057.10.357
MA0058.10.924
MA0059.10.166
MA0060.10.778
MA0061.10.964
MA0062.20.0837
MA0065.20.0849
MA0066.10.709
MA0067.10.00197
MA0068.10.17
MA0069.10.08
MA0070.10.923
MA0071.10.541
MA0072.10.277
MA0073.10.649
MA0074.10.7
MA0076.10.103
MA0077.10.466
MA0078.10.176
MA0079.20.17
MA0080.22.96127e-8
MA0081.10.085
MA0083.10.0168
MA0084.10.368
MA0087.10.184
MA0088.10.0363
MA0090.15.97981e-6
MA0091.10.162
MA0092.10.429
MA0093.10.716
MA0099.21.11382e-4
MA0100.10.818
MA0101.10.821
MA0102.20.109
MA0103.10.0355
MA0104.20.364
MA0105.10.964
MA0106.10.00109
MA0107.10.993
MA0108.20.383
MA0111.10.112
MA0112.20.163
MA0113.10.714
MA0114.10.094
MA0115.10.242
MA0116.10.834
MA0117.10.364
MA0119.10.052
MA0122.10.897
MA0124.10.088
MA0125.10.299
MA0131.10.62
MA0135.10.0823
MA0136.16.14772e-6
MA0137.20.267
MA0138.20.0019
MA0139.10.559
MA0140.10.0292
MA0141.10.944
MA0142.10.808
MA0143.10.373
MA0144.10.15
MA0145.10.482
MA0146.10.0688
MA0147.10.0721
MA0148.10.0176
MA0149.10.213
MA0150.10.886
MA0152.10.722
MA0153.10.046
MA0154.10.298
MA0155.10.938
MA0156.10.155
MA0157.10.0152
MA0159.10.0267
MA0160.10.515
MA0162.10.119
MA0163.10.752
MA0164.10.274
MA0258.10.439
MA0259.10.77



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13062

Novel motifP-value
10.568
100.541
1000.065
1010.778
1020.803
1030.163
1040.909
1050.364
1060.176
1070.12
1080.893
1090.0358
110.516
1100.047
1110.778
1120.783
1130.0108
1140.248
1150.864
1160.0989
1170.257
1180.227
1190.821
120.813
1200.286
1210.936
1220.593
1230.94
1240.0932
1250.823
1260.962
1270.937
1280.789
1290.734
130.0191
1300.968
1310.88
1320.584
1330.0822
1340.0857
1350.00346
1360.0135
1370.0772
1380.737
1390.144
140.352
1400.297
1410.492
1420.614
1430.205
1440.902
1450.729
1460.426
1470.735
1480.641
1490.346
150.943
1500.0999
1510.944
1520.0333
1530.258
1540.831
1550.715
1560.858
1570.379
1580.0128
1590.467
160.283
1600.227
1610.154
1620.577
1630.945
1640.0591
1650.286
1660.82
1670.936
1680.313
1690.0224
170.959
180.904
190.855
20.889
200.244
210.00383
220.819
230.0361
240.187
250.345
260.481
270.9
280.157
290.26
30.655
300.552
310.497
320.389
330.459
340.746
350.705
360.667
370.17
380.841
390.349
40.535
400.515
410.0091
420.666
430.0924
440.48
450.975
460.83
470.489
480.224
490.16
50.0832
500.467
510.518
520.596
530.882
540.399
550.614
560.476
570.0838
580.287
590.488
60.833
600.991
610.443
620.37
630.279
640.804
650.553
660.0306
670.717
680.849
690.109
70.793
700.951
710.0901
720.202
730.143
740.834
750.526
760.174
770.0555
780.154
790.568
80.249
800.0786
810.375
820.717
830.759
840.986
850.0459
860.583
870.0108
880.268
890.275
90.225
900.227
910.187
920.0489
930.697
940.494
950.132
960.583
970.823
980.653
990.379



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13062


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102553 (non-small cell lung cancer cell line sample)
0102424 (mesothelioma cell line sample)
0103008 (NCI-H226 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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