FF:11604-120I2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004864 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004864 | ||
|accession_numbers=CAGE;DRX008305;DRR009177;DRZ000602;DRZ001987;DRZ011952;DRZ013337 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037138;DRR041504;DRZ007146 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000057,CL:0000632 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000077 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.21!161.71!MYOG;;chr11:61520075..61520136,+!p1@C11orf9!2.18!308.72!C11orf9;;chr4:174451370..174451387,-!p1@HAND2!2.13!135.25!HAND2;;chr8:11561684..11561751,+!p1@GATA4!1.79!60.27!GATA4;;chr2:19558373..19558392,-!p1@OSR1!1.65!116.14!OSR1;;chr18:19749541..19749557,+!p1@GATA6!1.59!114.67!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.59!52.92!GATA6;;chr19:46801639..46801699,+!p1@HIF3A!1.54!33.81!HIF3A;;chr11:46299539..46299620,+!p2@CREB3L1!1.49!49.98!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.47!76.44!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.40!122.02!CREB3L1;;chr11:32457075..32457095,-!p1@WT1!1.36!22.05!WT1;;chr16:86544113..86544145,+!p1@FOXF1!1.35!26.46!FOXF1;;chr17:1959369..1959388,+!p2@HIC1!1.32!51.45!HIC1;;chr5:92919375..92919438,+!p6@NR2F1!1.27!19.11!NR2F1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.27!17.64!SEBOX;;chr5:92918919..92918942,+!p1@NR2F1!1.26!74.97!NR2F1;;chr17:46675420..46675465,-!p3@HOXB6!1.21!17.64!HOXB6;;chr7:35293685..35293718,-!p1@TBX20!1.20!14.70!TBX20;;chr7:44143925..44143970,+!p1@AEBP1!1.16!296.96!AEBP1;;chr18:19749353..19749367,+!p4@GATA6!1.15!13.23!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.23!HAND2;;chr11:125034640..125034655,+!p1@PKNOX2!1.15!13.23!PKNOX2;;chr17:46655704..46655718,-!p2@HOXB4!1.11!17.64!HOXB4;;chr4:174451350..174451363,-!p3@HAND2!1.11!11.76!HAND2;;chr2:239148671..239148686,-!p1@HES6!1.09!41.16!HES6;;chr20:62680984..62680999,-!p1@SOX18!1.08!14.70!SOX18;;chr7:44143978..44143989,+!p2@AEBP1!1.05!19.11!AEBP1;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.76!BNC1;;chr11:125034605..125034636,+!p2@PKNOX2!1.05!10.29!PKNOX2;;chr12:54447637..54447659,+!p4@HOXC4!1.05!10.29!HOXC4;;chr8:55370487..55370503,+!p1@SOX17!1.05!10.29!SOX17;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.29!KDM5D;;chr20:48599506..48599526,+!p1@SNAI1!1.02!61.74!SNAI1;;chr12:54447599..54447630,+!p3@HOXC4!1.02!11.76!HOXC4;;chr17:46622070..46622109,-!p1@HOXB2!1.00!20.58!HOXB2;;chr18:19749517..19749531,+!p3@GATA6!1.00!16.17!GATA6;;chr7:150945754..150945789,-!p2@SMARCD3!0.99!27.93!SMARCD3;;chr11:63684602..63684664,-!p1@RCOR2!0.99!17.64!RCOR2;;chr11:125034586..125034604,+!p3@PKNOX2!0.99!8.82!PKNOX2;;chr6:134210243..134210257,+!p1@TCF21!0.99!8.82!TCF21;;chr9:126774018..126774055,+!p1@LHX2!0.99!8.82!LHX2;;chr16:31076332..31076388,-!p3@ZNF668!0.99!8.82!ZNF668;;chr7:44143997..44144008,+!p3@AEBP1!0.95!10.29!AEBP1;;chr11:46299186..46299195,+!p3@CREB3L1!0.95!8.82!CREB3L1;;chr17:1958388..1958404,+!p1@HIC1!0.93!49.98!HIC1;;chr2:239756671..239756732,+!p1@TWIST2!0.93!24.99!TWIST2;;chr7:42276787..42276815,-!p1@GLI3!0.93!20.58!GLI3;;chr18:77155922..77155939,+!p1@NFATC1!0.92!20.58!NFATC1;;chr7:19157043..19157088,-!p2@TWIST1!0.92!19.11!TWIST1;;chrX:107018969..107019024,-!p6@TSC22D3!0.92!10.29!TSC22D3;;chr15:67430351..67430366,+!p10@SMAD3!0.92!7.35!SMAD3;;chr16:1031762..1031781,+!p1@SOX8!0.92!7.35!SOX8;;chr17:46655672..46655697,-!p3@HOXB4!0.92!7.35!HOXB4;;chr11:17741111..17741124,+!p1@MYOD1!0.92!7.35!MYOD1;;chr11:46299443..46299459,+!p4@CREB3L1!0.92!7.35!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!0.92!7.35!HOXA3;;chr17:38498594..38498661,+!p2@RARA!0.91!24.99!RARA;;chr5:92919100..92919135,+!p3@NR2F1!0.91!8.82!NR2F1;;chr19:13134772..13134822,+!p2@NFIX!0.89!10.29!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.88!161.71!NFIX;;chr12:57504975..57505019,-!p2@STAT6!0.88!27.93!STAT6;;chr17:46622114..46622138,-!p4@HOXB2!0.88!10.29!HOXB2;;chr17:46621937..46621966,-!p2@HOXB2!0.86!17.64!HOXB2;;chr20:2673383..2673441,+!p1@EBF4!0.86!10.29!EBF4;;chr1:221052840..221052875,+!p4@HLX!0.85!7.35!HLX;;chr16:8962853..8962878,-!p1@CARHSP1!0.84!373.40!CARHSP1;;chr5:92918894..92918912,+!p2@NR2F1!0.84!20.58!NR2F1;;chr8:106330656..106330684,+!p1@ZFPM2!0.84!16.17!ZFPM2;;chr9:16870659..16870675,-!p2@BNC2!0.84!7.35!BNC2;;chr9:130966497..130966541,-!p4@CIZ1!0.84!5.88!CIZ1;;chr2:5832508..5832524,+!p1@SOX11!0.84!5.88!SOX11;;chr19:46800289..46800327,+!p2@HIF3A!0.84!5.88!HIF3A;;chr1:40105299..40105326,-!p1@HEYL!0.84!5.88!HEYL;;chr12:124873357..124873401,-!p1@NCOR2!0.83!72.03!NCOR2;;chr1:8484142..8484232,-!p10@RERE!0.82!16.17!RERE;;chr8:72756213..72756243,-!p5@MSC!0.82!7.35!MSC;;chr19:31840130..31840160,-!p2@TSHZ3!0.81!8.82!TSHZ3;;chr8:48650715..48650735,-!p1@CEBPD!0.80!733.57!CEBPD;;chr3:52001448..52001478,-!p2@PCBP4!0.80!79.38!PCBP4;;chr17:46621101..46621143,-!p7@HOXB2!0.80!7.35!HOXB2;;chr5:92918956..92918969,+!p4@NR2F1!0.80!5.88!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.79!116.14!SNAI2;;chr7:149470641..149470694,-!p1@ZNF467!0.79!24.99!ZNF467;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.23!TOX2;;chr16:67881588..67881612,-!p2@CENPT!0.79!7.35!CENPT;;chr7:44143738..44143760,+!p4@AEBP1!0.79!5.88!AEBP1;;chr8:72756637..72756664,-!p3@MSC!0.79!5.88!MSC;;chr17:3571863..3571881,-!p1@TAX1BP3!0.78!391.04!TAX1BP3;;chr15:37392703..37392717,-!p8@MEIS2!0.78!7.35!MEIS2;;chr5:92920456..92920488,+!p9@NR2F1!0.78!5.88!NR2F1;;chr11:47279248..47279264,+!p3@NR1H3!0.78!5.88!NR1H3;;chrX:106960285..106960299,-!p1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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 34: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor2.CNhs12093.11604-120I2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor2.CNhs12093.11604-120I2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor2.CNhs12093.11604-120I2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor2.CNhs12093.11604-120I2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor2.CNhs12093.11604-120I2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11604-120I2 | |id=FF:11604-120I2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000077;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs12093 | |||
|library_id_phase_based=2:CNhs12093 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11604 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.AGTTCC.11604 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11604 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.AGTTCC.11604 | |||
|name=Hepatic Stellate Cells (lipocyte), donor2 | |name=Hepatic Stellate Cells (lipocyte), donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 41: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12093,LSID839,release011,COMPLETED | |profile_hcage=CNhs12093,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC5305 | |rna_catalog_number=SC5305 | ||
| Line 55: | Line 82: | ||
|rna_tube_id=120I2 | |rna_tube_id=120I2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10009.AGTTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 68: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.61435238449489e-250!GO:0005737;cytoplasm;2.8129608888888e-179!GO:0044444;cytoplasmic part;1.22533282586256e-133!GO:0043226;organelle;6.19215543000398e-125!GO:0043229;intracellular organelle;8.70656909162438e-125!GO:0043231;intracellular membrane-bound organelle;5.76961023348856e-115!GO:0043227;membrane-bound organelle;1.25160297288175e-114!GO:0044422;organelle part;5.05701921217513e-105!GO:0044446;intracellular organelle part;4.93695447167378e-104!GO:0005515;protein binding;1.9118018946009e-75!GO:0032991;macromolecular complex;7.11234987670241e-68!GO:0030529;ribonucleoprotein complex;1.14946008051514e-60!GO:0005739;mitochondrion;2.94371943451954e-60!GO:0044237;cellular metabolic process;7.65002101314041e-51!GO:0044238;primary metabolic process;7.94233636502873e-51!GO:0043233;organelle lumen;3.54340703027449e-47!GO:0031974;membrane-enclosed lumen;3.54340703027449e-47!GO:0031090;organelle membrane;8.31683942960558e-46!GO:0005840;ribosome;3.39768566607511e-44!GO:0043170;macromolecule metabolic process;1.35730820150325e-41!GO:0003735;structural constituent of ribosome;7.46710888664883e-41!GO:0044429;mitochondrial part;2.82454914369094e-40!GO:0016043;cellular component organization and biogenesis;3.80237372843882e-40!GO:0019538;protein metabolic process;4.37852959667833e-40!GO:0009058;biosynthetic process;6.41846626080324e-39!GO:0003723;RNA binding;4.96936939024245e-38!GO:0044428;nuclear part;4.96936939024245e-38!GO:0006412;translation;1.93593087678344e-36!GO:0044260;cellular macromolecule metabolic process;1.12207565880749e-35!GO:0033279;ribosomal subunit;1.16081110096826e-35!GO:0044249;cellular biosynthetic process;2.57536757637621e-35!GO:0044267;cellular protein metabolic process;1.57694779853259e-34!GO:0043234;protein complex;3.83276125664418e-34!GO:0031967;organelle envelope;9.84782349585924e-34!GO:0031975;envelope;1.45189399950636e-33!GO:0005829;cytosol;4.35995956234652e-33!GO:0009059;macromolecule biosynthetic process;5.50023772422738e-31!GO:0005740;mitochondrial envelope;5.89121577007225e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.36847030739964e-28!GO:0015031;protein transport;2.11815351685367e-28!GO:0031966;mitochondrial membrane;2.34400861820074e-28!GO:0033036;macromolecule localization;8.34663356129584e-28!GO:0019866;organelle inner membrane;5.44027771556782e-27!GO:0008104;protein localization;1.41371254850715e-26!GO:0045184;establishment of protein localization;3.09647400369047e-26!GO:0005743;mitochondrial inner membrane;3.62182862529436e-26!GO:0005634;nucleus;1.93177812524121e-25!GO:0006396;RNA processing;5.79214726074766e-25!GO:0046907;intracellular transport;1.07046719757138e-24!GO:0006996;organelle organization and biogenesis;3.0840658506794e-24!GO:0031981;nuclear lumen;3.44767539705206e-24!GO:0043228;non-membrane-bound organelle;3.67557836068755e-23!GO:0043232;intracellular non-membrane-bound organelle;3.67557836068755e-23!GO:0044445;cytosolic part;3.73548565694629e-22!GO:0005783;endoplasmic reticulum;2.75003309349737e-21!GO:0065003;macromolecular complex assembly;6.06111048439031e-21!GO:0022607;cellular component assembly;8.61134337048281e-21!GO:0016071;mRNA metabolic process;2.90125943880821e-20!GO:0006886;intracellular protein transport;6.32002990124092e-20!GO:0044455;mitochondrial membrane part;2.26171507772838e-19!GO:0015934;large ribosomal subunit;9.57104854541786e-19!GO:0006119;oxidative phosphorylation;1.1601252419795e-18!GO:0008380;RNA splicing;3.93341633503537e-18!GO:0015935;small ribosomal subunit;6.76725052659871e-18!GO:0006397;mRNA processing;1.90648064429483e-17!GO:0048770;pigment granule;1.7175480255624e-16!GO:0042470;melanosome;1.7175480255624e-16!GO:0012505;endomembrane system;1.73005814406277e-16!GO:0005794;Golgi apparatus;3.05645735391274e-16!GO:0044432;endoplasmic reticulum part;3.52794218914278e-16!GO:0005746;mitochondrial respiratory chain;4.72536679518946e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.64288792201447e-16!GO:0043283;biopolymer metabolic process;1.88933096248498e-15!GO:0051641;cellular localization;6.91347466776728e-15!GO:0051649;establishment of cellular localization;7.86244268474585e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.14462779624392e-14!GO:0051186;cofactor metabolic process;1.22052184209085e-14!GO:0005654;nucleoplasm;1.22129143453217e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.30992485654403e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.85801444529773e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.36705014552788e-14!GO:0003954;NADH dehydrogenase activity;3.36705014552788e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.36705014552788e-14!GO:0010467;gene expression;8.6869588910115e-14!GO:0031980;mitochondrial lumen;1.04678789877322e-13!GO:0005759;mitochondrial matrix;1.04678789877322e-13!GO:0008134;transcription factor binding;1.3528839303478e-13!GO:0006457;protein folding;2.33592811457704e-13!GO:0005681;spliceosome;4.5341416057771e-13!GO:0044451;nucleoplasm part;9.50977208853276e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.4706163060381e-12!GO:0042773;ATP synthesis coupled electron transport;1.4706163060381e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.29637484068302e-12!GO:0045271;respiratory chain complex I;3.29637484068302e-12!GO:0005747;mitochondrial respiratory chain complex I;3.29637484068302e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.29937870330172e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.15413465357525e-11!GO:0006259;DNA metabolic process;2.1889380819826e-11!GO:0000166;nucleotide binding;2.21910161022463e-11!GO:0016192;vesicle-mediated transport;3.45429403639499e-11!GO:0016462;pyrophosphatase activity;5.52453249975841e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.62744984105985e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;5.81896916695229e-11!GO:0017111;nucleoside-triphosphatase activity;8.77528367105736e-11!GO:0005761;mitochondrial ribosome;8.83854666910669e-11!GO:0000313;organellar ribosome;8.83854666910669e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.83854666910669e-11!GO:0006732;coenzyme metabolic process;1.17205966188783e-10!GO:0005789;endoplasmic reticulum membrane;1.20926020963861e-10!GO:0006605;protein targeting;1.47275386259998e-10!GO:0048193;Golgi vesicle transport;1.73008167024684e-10!GO:0016874;ligase activity;2.03319733411715e-10!GO:0016491;oxidoreductase activity;2.76997055608052e-10!GO:0009055;electron carrier activity;3.0413541708972e-10!GO:0000502;proteasome complex (sensu Eukaryota);3.40150597450522e-10!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.82591850256791e-10!GO:0043412;biopolymer modification;4.16616501150148e-10!GO:0005793;ER-Golgi intermediate compartment;6.03993383627666e-10!GO:0051082;unfolded protein binding;6.75224766099185e-10!GO:0006512;ubiquitin cycle;7.00562435834841e-10!GO:0048523;negative regulation of cellular process;1.69248146928862e-09!GO:0044248;cellular catabolic process;1.71100942095182e-09!GO:0006464;protein modification process;2.32668352017153e-09!GO:0044265;cellular macromolecule catabolic process;2.68315170696404e-09!GO:0005730;nucleolus;3.19383872302628e-09!GO:0022618;protein-RNA complex assembly;3.57821046144142e-09!GO:0012501;programmed cell death;3.74747588933197e-09!GO:0003712;transcription cofactor activity;6.01575183894438e-09!GO:0032553;ribonucleotide binding;7.32427104346038e-09!GO:0032555;purine ribonucleotide binding;7.32427104346038e-09!GO:0006915;apoptosis;8.22806461725582e-09!GO:0008135;translation factor activity, nucleic acid binding;8.62987821916674e-09!GO:0017076;purine nucleotide binding;1.44455441011238e-08!GO:0007049;cell cycle;2.38770833220849e-08!GO:0005788;endoplasmic reticulum lumen;2.67621234987484e-08!GO:0048519;negative regulation of biological process;3.56100667284142e-08!GO:0009057;macromolecule catabolic process;3.6522489133715e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.72627471278593e-08!GO:0008219;cell death;4.88689855046536e-08!GO:0016265;death;4.88689855046536e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;4.99059538671526e-08!GO:0000375;RNA splicing, via transesterification reactions;4.99059538671526e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.99059538671526e-08!GO:0043285;biopolymer catabolic process;5.13540711392703e-08!GO:0043687;post-translational protein modification;9.20893042977289e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.6162486575419e-07!GO:0051603;proteolysis involved in cellular protein catabolic process;1.96503347600926e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.27319455994849e-07!GO:0044257;cellular protein catabolic process;2.46232731997983e-07!GO:0019941;modification-dependent protein catabolic process;2.82455058767867e-07!GO:0043632;modification-dependent macromolecule catabolic process;2.82455058767867e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.96700413372373e-07!GO:0009150;purine ribonucleotide metabolic process;3.17819807441088e-07!GO:0051188;cofactor biosynthetic process;3.83384392421115e-07!GO:0006511;ubiquitin-dependent protein catabolic process;4.33681637457972e-07!GO:0031988;membrane-bound vesicle;4.63758227893691e-07!GO:0009259;ribonucleotide metabolic process;5.99837143397488e-07!GO:0042254;ribosome biogenesis and assembly;7.0895565753586e-07!GO:0006461;protein complex assembly;7.3867711933425e-07!GO:0006091;generation of precursor metabolites and energy;7.49633599907586e-07!GO:0006323;DNA packaging;7.50361183955927e-07!GO:0003743;translation initiation factor activity;8.94737815794061e-07!GO:0032559;adenyl ribonucleotide binding;9.06067842481844e-07!GO:0008361;regulation of cell size;9.87116270977983e-07!GO:0006913;nucleocytoplasmic transport;9.94052537157874e-07!GO:0005524;ATP binding;1.0170218968753e-06!GO:0044431;Golgi apparatus part;1.02355028710631e-06!GO:0016049;cell growth;1.03363520383278e-06!GO:0030163;protein catabolic process;1.03469008522834e-06!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.05023064368473e-06!GO:0006163;purine nucleotide metabolic process;1.07319521846641e-06!GO:0048475;coated membrane;1.07319521846641e-06!GO:0030117;membrane coat;1.07319521846641e-06!GO:0022402;cell cycle process;1.07724704270793e-06!GO:0030120;vesicle coat;1.21634101419365e-06!GO:0030662;coated vesicle membrane;1.21634101419365e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.21634101419365e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.26151861132472e-06!GO:0030029;actin filament-based process;1.28219594895044e-06!GO:0006366;transcription from RNA polymerase II promoter;1.34317938551156e-06!GO:0017038;protein import;1.41753795922685e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.54927020075969e-06!GO:0008092;cytoskeletal protein binding;1.61546018553924e-06!GO:0051169;nuclear transport;1.61713515642263e-06!GO:0008565;protein transporter activity;1.79673200436175e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.90470746983473e-06!GO:0030554;adenyl nucleotide binding;2.011735249103e-06!GO:0009141;nucleoside triphosphate metabolic process;2.14587727571663e-06!GO:0031410;cytoplasmic vesicle;2.22355194521921e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.25077315695984e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.31499920081262e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.31499920081262e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.54878111574657e-06!GO:0031982;vesicle;3.0549496496874e-06!GO:0016604;nuclear body;3.73291781556028e-06!GO:0003714;transcription corepressor activity;3.94167391737178e-06!GO:0000074;regulation of progression through cell cycle;4.17956082431792e-06!GO:0051726;regulation of cell cycle;4.4163261248999e-06!GO:0016564;transcription repressor activity;4.73728701245905e-06!GO:0016740;transferase activity;5.01894399832807e-06!GO:0009142;nucleoside triphosphate biosynthetic process;5.54904137918999e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.54904137918999e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.63449823841035e-06!GO:0031252;leading edge;5.8259982077487e-06!GO:0009060;aerobic respiration;6.13173626425565e-06!GO:0009260;ribonucleotide biosynthetic process;6.28323662097688e-06!GO:0015986;ATP synthesis coupled proton transport;6.35394062949349e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.35394062949349e-06!GO:0045259;proton-transporting ATP synthase complex;6.80428401792053e-06!GO:0003924;GTPase activity;7.12644175053794e-06!GO:0005905;coated pit;7.18008092352654e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.18008092352654e-06!GO:0006164;purine nucleotide biosynthetic process;7.54097077815457e-06!GO:0051276;chromosome organization and biogenesis;7.91077205257903e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.30562227702686e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.30562227702686e-06!GO:0005635;nuclear envelope;8.5920131567265e-06!GO:0006333;chromatin assembly or disassembly;8.6509724795081e-06!GO:0065004;protein-DNA complex assembly;9.0693483981062e-06!GO:0006446;regulation of translational initiation;1.01655657146784e-05!GO:0019829;cation-transporting ATPase activity;1.06000933251583e-05!GO:0001558;regulation of cell growth;1.1055011955035e-05!GO:0016853;isomerase activity;1.12948196965829e-05!GO:0046034;ATP metabolic process;1.12948196965829e-05!GO:0008610;lipid biosynthetic process;1.22156717929112e-05!GO:0006413;translational initiation;1.30831994460485e-05!GO:0008639;small protein conjugating enzyme activity;1.33437578874827e-05!GO:0006399;tRNA metabolic process;1.36448565580847e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.56610035936074e-05!GO:0000278;mitotic cell cycle;1.71896618809842e-05!GO:0009117;nucleotide metabolic process;1.85265636547122e-05!GO:0004842;ubiquitin-protein ligase activity;2.30468664607454e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.31548610529246e-05!GO:0007005;mitochondrion organization and biogenesis;2.38456721845811e-05!GO:0009056;catabolic process;2.43757546400406e-05!GO:0043067;regulation of programmed cell death;2.49660947362585e-05!GO:0005768;endosome;2.57821497868042e-05!GO:0007010;cytoskeleton organization and biogenesis;2.62818966571636e-05!GO:0042981;regulation of apoptosis;2.77067181685987e-05!GO:0045786;negative regulation of progression through cell cycle;2.83399285583643e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.08439702774422e-05!GO:0005762;mitochondrial large ribosomal subunit;3.53271728418988e-05!GO:0000315;organellar large ribosomal subunit;3.53271728418988e-05!GO:0006334;nucleosome assembly;3.68578873286655e-05!GO:0005773;vacuole;3.68578873286655e-05!GO:0006754;ATP biosynthetic process;3.70406000199371e-05!GO:0006753;nucleoside phosphate metabolic process;3.70406000199371e-05!GO:0031965;nuclear membrane;3.77716140205094e-05!GO:0019787;small conjugating protein ligase activity;4.49851240966132e-05!GO:0045333;cellular respiration;4.55922856139208e-05!GO:0031497;chromatin assembly;4.7434235936999e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.77242117597855e-05!GO:0042623;ATPase activity, coupled;4.86519067761947e-05!GO:0043069;negative regulation of programmed cell death;5.53389355552747e-05!GO:0006793;phosphorus metabolic process;5.56816483365949e-05!GO:0006796;phosphate metabolic process;5.56816483365949e-05!GO:0051789;response to protein stimulus;5.70866349740695e-05!GO:0006986;response to unfolded protein;5.70866349740695e-05!GO:0051246;regulation of protein metabolic process;6.12559637264455e-05!GO:0006916;anti-apoptosis;6.60081721254259e-05!GO:0045454;cell redox homeostasis;6.74554593488596e-05!GO:0044262;cellular carbohydrate metabolic process;6.82681945971073e-05!GO:0065002;intracellular protein transport across a membrane;6.82681945971073e-05!GO:0019843;rRNA binding;6.97720514373717e-05!GO:0016563;transcription activator activity;7.38429770587255e-05!GO:0000139;Golgi membrane;7.40407975481086e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.64694277315184e-05!GO:0004812;aminoacyl-tRNA ligase activity;7.64694277315184e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.64694277315184e-05!GO:0043066;negative regulation of apoptosis;7.92613840188226e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.15748492192728e-05!GO:0000785;chromatin;8.15748492192728e-05!GO:0005667;transcription factor complex;9.41476752760183e-05!GO:0006364;rRNA processing;9.45299739768083e-05!GO:0016310;phosphorylation;9.62799262542998e-05!GO:0016044;membrane organization and biogenesis;9.98067762933785e-05!GO:0016887;ATPase activity;0.000101058405238407!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0001027243508351!GO:0009108;coenzyme biosynthetic process;0.000107602636050062!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00011243897356542!GO:0016607;nuclear speck;0.000116002553199943!GO:0005798;Golgi-associated vesicle;0.00011764728945561!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00011764728945561!GO:0015002;heme-copper terminal oxidase activity;0.00011764728945561!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00011764728945561!GO:0004129;cytochrome-c oxidase activity;0.00011764728945561!GO:0006752;group transfer coenzyme metabolic process;0.000121904566769766!GO:0005791;rough endoplasmic reticulum;0.000127944923671163!GO:0051427;hormone receptor binding;0.000133162171386492!GO:0031324;negative regulation of cellular metabolic process;0.000137451090770425!GO:0016881;acid-amino acid ligase activity;0.000153454964758015!GO:0008654;phospholipid biosynthetic process;0.000156182239916874!GO:0048522;positive regulation of cellular process;0.000158044134134497!GO:0044440;endosomal part;0.000161883833667158!GO:0010008;endosome membrane;0.000161883833667158!GO:0043038;amino acid activation;0.0002031102988086!GO:0006418;tRNA aminoacylation for protein translation;0.0002031102988086!GO:0043039;tRNA aminoacylation;0.0002031102988086!GO:0016126;sterol biosynthetic process;0.000203231266978504!GO:0016072;rRNA metabolic process;0.000210556893799693!GO:0004298;threonine endopeptidase activity;0.000236042940679126!GO:0035257;nuclear hormone receptor binding;0.000246541512199844!GO:0019899;enzyme binding;0.000276645125492008!GO:0006099;tricarboxylic acid cycle;0.000283533940067917!GO:0046356;acetyl-CoA catabolic process;0.000283533940067917!GO:0000323;lytic vacuole;0.000283533940067917!GO:0005764;lysosome;0.000283533940067917!GO:0044453;nuclear membrane part;0.00031978860565625!GO:0005525;GTP binding;0.000329797674674757!GO:0016568;chromatin modification;0.000346594729389295!GO:0051170;nuclear import;0.000353178273170812!GO:0006606;protein import into nucleus;0.000374686226684492!GO:0016787;hydrolase activity;0.000374686226684492!GO:0030133;transport vesicle;0.000401118775207253!GO:0003713;transcription coactivator activity;0.000415078291574326!GO:0006082;organic acid metabolic process;0.000444729119318302!GO:0006084;acetyl-CoA metabolic process;0.000444729119318302!GO:0051187;cofactor catabolic process;0.000445793709257907!GO:0030867;rough endoplasmic reticulum membrane;0.000454208850838229!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000474556842179158!GO:0006979;response to oxidative stress;0.000520089890102393!GO:0005770;late endosome;0.000555225429036361!GO:0005581;collagen;0.000555225429036361!GO:0019752;carboxylic acid metabolic process;0.00056473074658972!GO:0008250;oligosaccharyl transferase complex;0.000610325648269974!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.000626275754331495!GO:0040008;regulation of growth;0.000690132895295064!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000716992650169779!GO:0043623;cellular protein complex assembly;0.000732939564489678!GO:0009109;coenzyme catabolic process;0.000792152000279337!GO:0015980;energy derivation by oxidation of organic compounds;0.000881834571207954!GO:0051329;interphase of mitotic cell cycle;0.00102417213925605!GO:0030176;integral to endoplasmic reticulum membrane;0.00102759172444692!GO:0007264;small GTPase mediated signal transduction;0.00105647135751808!GO:0015629;actin cytoskeleton;0.0010789630612669!GO:0009892;negative regulation of metabolic process;0.0010789630612669!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00116951824940922!GO:0006974;response to DNA damage stimulus;0.00125430513414971!GO:0000245;spliceosome assembly;0.0012876202864964!GO:0046474;glycerophospholipid biosynthetic process;0.00128803458685595!GO:0007243;protein kinase cascade;0.00129388443007015!GO:0006695;cholesterol biosynthetic process;0.00137212230595845!GO:0016859;cis-trans isomerase activity;0.00144088971189765!GO:0016481;negative regulation of transcription;0.00145115814370149!GO:0031968;organelle outer membrane;0.00145551514568181!GO:0003779;actin binding;0.00150441509914742!GO:0006778;porphyrin metabolic process;0.00151725866472814!GO:0033013;tetrapyrrole metabolic process;0.00151725866472814!GO:0048518;positive regulation of biological process;0.00166537197697895!GO:0018196;peptidyl-asparagine modification;0.00167693967379405!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00167693967379405!GO:0045792;negative regulation of cell size;0.00167846542985263!GO:0022890;inorganic cation transmembrane transporter activity;0.00167846542985263!GO:0019867;outer membrane;0.00172025689480053!GO:0030132;clathrin coat of coated pit;0.00179416403270154!GO:0030659;cytoplasmic vesicle membrane;0.00180071906228982!GO:0032561;guanyl ribonucleotide binding;0.00186236550851464!GO:0019001;guanyl nucleotide binding;0.00186236550851464!GO:0005048;signal sequence binding;0.00187163695068685!GO:0006118;electron transport;0.00189349611610269!GO:0030308;negative regulation of cell growth;0.00196056561265782!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00209487458689037!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00209487458689037!GO:0030118;clathrin coat;0.00211241618762722!GO:0016125;sterol metabolic process;0.00222503885975507!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00229591886125589!GO:0030027;lamellipodium;0.00234320871236149!GO:0006779;porphyrin biosynthetic process;0.00237378027311195!GO:0033014;tetrapyrrole biosynthetic process;0.00237378027311195!GO:0045941;positive regulation of transcription;0.00240295226287301!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00240295226287301!GO:0015399;primary active transmembrane transporter activity;0.00240295226287301!GO:0051920;peroxiredoxin activity;0.00252459003109449!GO:0005741;mitochondrial outer membrane;0.00261971747481364!GO:0009719;response to endogenous stimulus;0.00261971747481364!GO:0000786;nucleosome;0.00268875708765727!GO:0043681;protein import into mitochondrion;0.00284279077789868!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00292644567016153!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00307141740708056!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00308454999580857!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00323929850729489!GO:0051325;interphase;0.00324752363667674!GO:0004576;oligosaccharyl transferase activity;0.00324947159329331!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00324947159329331!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00324947159329331!GO:0007006;mitochondrial membrane organization and biogenesis;0.00324947159329331!GO:0046930;pore complex;0.00328557805098124!GO:0006260;DNA replication;0.00338431594938485!GO:0043488;regulation of mRNA stability;0.00339196518836228!GO:0043487;regulation of RNA stability;0.00339196518836228!GO:0005865;striated muscle thin filament;0.00340295112525636!GO:0003697;single-stranded DNA binding;0.0035830450434818!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00360115691111995!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00371907705531497!GO:0005694;chromosome;0.00386348675964628!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00388899646453382!GO:0016779;nucleotidyltransferase activity;0.00409918101131678!GO:0006595;polyamine metabolic process;0.00409918101131678!GO:0005774;vacuolar membrane;0.00410086848490436!GO:0044255;cellular lipid metabolic process;0.00410086848490436!GO:0000314;organellar small ribosomal subunit;0.00410399587728155!GO:0005763;mitochondrial small ribosomal subunit;0.00410399587728155!GO:0006066;alcohol metabolic process;0.00414010360984428!GO:0004364;glutathione transferase activity;0.00431903910809989!GO:0044427;chromosomal part;0.00436912388376962!GO:0008026;ATP-dependent helicase activity;0.00442645858945838!GO:0048468;cell development;0.00445901687809431!GO:0005885;Arp2/3 protein complex;0.00446830794408574!GO:0032446;protein modification by small protein conjugation;0.00447844480464192!GO:0042168;heme metabolic process;0.00461085163734702!GO:0000151;ubiquitin ligase complex;0.00464217914653462!GO:0006740;NADPH regeneration;0.00473707040242051!GO:0006098;pentose-phosphate shunt;0.00473707040242051!GO:0008286;insulin receptor signaling pathway;0.00479212065195771!GO:0005643;nuclear pore;0.00494878985515939!GO:0030031;cell projection biogenesis;0.00531526093224446!GO:0016567;protein ubiquitination;0.00531526093224446!GO:0030663;COPI coated vesicle membrane;0.0053584471149259!GO:0030126;COPI vesicle coat;0.0053584471149259!GO:0006613;cotranslational protein targeting to membrane;0.00544419298094837!GO:0017166;vinculin binding;0.00544419298094837!GO:0030658;transport vesicle membrane;0.00544419298094837!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00549280733421866!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00549280733421866!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00549280733421866!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00549280733421866!GO:0065009;regulation of a molecular function;0.00571550980814649!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00574035972885332!GO:0006790;sulfur metabolic process;0.00576847437997685!GO:0030137;COPI-coated vesicle;0.00582543741231113!GO:0006509;membrane protein ectodomain proteolysis;0.00591708308457514!GO:0033619;membrane protein proteolysis;0.00591708308457514!GO:0016860;intramolecular oxidoreductase activity;0.0059179304864287!GO:0000902;cell morphogenesis;0.00592391821084361!GO:0032989;cellular structure morphogenesis;0.00592391821084361!GO:0045893;positive regulation of transcription, DNA-dependent;0.00611982639012487!GO:0044433;cytoplasmic vesicle part;0.0063265280656967!GO:0043284;biopolymer biosynthetic process;0.0063692013479732!GO:0005769;early endosome;0.00684046673380207!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00688167169146404!GO:0031418;L-ascorbic acid binding;0.0069006929935303!GO:0015630;microtubule cytoskeleton;0.0069006929935303!GO:0030119;AP-type membrane coat adaptor complex;0.00692095900251789!GO:0006783;heme biosynthetic process;0.0070896182452925!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00720667344510233!GO:0009165;nucleotide biosynthetic process;0.00722483725409172!GO:0050789;regulation of biological process;0.00728857392745011!GO:0005684;U2-dependent spliceosome;0.00732497909002564!GO:0006281;DNA repair;0.00733299902808803!GO:0043021;ribonucleoprotein binding;0.00744470693162116!GO:0051101;regulation of DNA binding;0.00758559504944377!GO:0022403;cell cycle phase;0.00763278743806679!GO:0003899;DNA-directed RNA polymerase activity;0.00777607397235552!GO:0042802;identical protein binding;0.00799723712187268!GO:0007040;lysosome organization and biogenesis;0.00802070923898515!GO:0016070;RNA metabolic process;0.00815055426631967!GO:0006897;endocytosis;0.00828765257928504!GO:0010324;membrane invagination;0.00828765257928504!GO:0006626;protein targeting to mitochondrion;0.00898979920445199!GO:0044437;vacuolar part;0.00898979920445199!GO:0003676;nucleic acid binding;0.00913434143667309!GO:0046467;membrane lipid biosynthetic process;0.0100642378698379!GO:0044420;extracellular matrix part;0.0104626056874192!GO:0031272;regulation of pseudopodium formation;0.0105157684320851!GO:0031269;pseudopodium formation;0.0105157684320851!GO:0031344;regulation of cell projection organization and biogenesis;0.0105157684320851!GO:0031268;pseudopodium organization and biogenesis;0.0105157684320851!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0105157684320851!GO:0031274;positive regulation of pseudopodium formation;0.0105157684320851!GO:0050794;regulation of cellular process;0.0107061289615695!GO:0030131;clathrin adaptor complex;0.0109028700926973!GO:0004386;helicase activity;0.0109584328817561!GO:0043492;ATPase activity, coupled to movement of substances;0.0110761570693156!GO:0019798;procollagen-proline dioxygenase activity;0.0110761570693156!GO:0030041;actin filament polymerization;0.0119173728226592!GO:0030134;ER to Golgi transport vesicle;0.0120526125157417!GO:0001726;ruffle;0.0122594984402121!GO:0045892;negative regulation of transcription, DNA-dependent;0.0123686518555711!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0125602971323918!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0126480426034476!GO:0048487;beta-tubulin binding;0.0126970041352937!GO:0035258;steroid hormone receptor binding;0.0126970041352937!GO:0030660;Golgi-associated vesicle membrane;0.0127071738612504!GO:0006414;translational elongation;0.0128631263078188!GO:0005583;fibrillar collagen;0.0128670528191398!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0130367865299911!GO:0007050;cell cycle arrest;0.0134066292206069!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.013501370152863!GO:0009967;positive regulation of signal transduction;0.0136924062631324!GO:0045926;negative regulation of growth;0.0137547671701707!GO:0005765;lysosomal membrane;0.0139243610458481!GO:0006839;mitochondrial transport;0.0148520710978342!GO:0019318;hexose metabolic process;0.0150275433041082!GO:0007033;vacuole organization and biogenesis;0.0153811225203716!GO:0006818;hydrogen transport;0.0155207485809132!GO:0005586;collagen type III;0.015604097893633!GO:0043566;structure-specific DNA binding;0.0158928933646971!GO:0008632;apoptotic program;0.0163548297972911!GO:0005862;muscle thin filament tropomyosin;0.0164068253365928!GO:0015992;proton transport;0.0168764813523235!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0169699477722319!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0169699477722319!GO:0008203;cholesterol metabolic process;0.0176191736442661!GO:0006739;NADP metabolic process;0.0177292663779473!GO:0001516;prostaglandin biosynthetic process;0.0178711435433032!GO:0046457;prostanoid biosynthetic process;0.0178711435433032!GO:0031543;peptidyl-proline dioxygenase activity;0.0180039620857543!GO:0000087;M phase of mitotic cell cycle;0.018139169412588!GO:0035035;histone acetyltransferase binding;0.0185252243836843!GO:0007067;mitosis;0.0188540380884373!GO:0006633;fatty acid biosynthetic process;0.0192539854532254!GO:0016301;kinase activity;0.0192908715139294!GO:0008154;actin polymerization and/or depolymerization;0.0193409919275428!GO:0033559;unsaturated fatty acid metabolic process;0.0193409919275428!GO:0006636;unsaturated fatty acid biosynthetic process;0.0193409919275428!GO:0046489;phosphoinositide biosynthetic process;0.0194395376290696!GO:0006520;amino acid metabolic process;0.0195337207973156!GO:0004177;aminopeptidase activity;0.0197968825076886!GO:0003724;RNA helicase activity;0.0204345656855151!GO:0046394;carboxylic acid biosynthetic process;0.0205994217530017!GO:0016053;organic acid biosynthetic process;0.0205994217530017!GO:0030125;clathrin vesicle coat;0.0205994217530017!GO:0030665;clathrin coated vesicle membrane;0.0205994217530017!GO:0006650;glycerophospholipid metabolic process;0.0206370820382851!GO:0005996;monosaccharide metabolic process;0.0207432380495625!GO:0046483;heterocycle metabolic process;0.0211154025803539!GO:0040029;regulation of gene expression, epigenetic;0.0221567944295039!GO:0031902;late endosome membrane;0.0222169933300576!GO:0012506;vesicle membrane;0.0222586985082216!GO:0051252;regulation of RNA metabolic process;0.0241740659536633!GO:0030127;COPII vesicle coat;0.0241740659536633!GO:0012507;ER to Golgi transport vesicle membrane;0.0241740659536633!GO:0031529;ruffle organization and biogenesis;0.0247621550766432!GO:0003756;protein disulfide isomerase activity;0.0248298580616125!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0248298580616125!GO:0008033;tRNA processing;0.0253391213702431!GO:0003746;translation elongation factor activity;0.0253514726744855!GO:0006891;intra-Golgi vesicle-mediated transport;0.0253685499822488!GO:0032507;maintenance of cellular protein localization;0.0256717530538288!GO:0051087;chaperone binding;0.0260980174303589!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0268982354293698!GO:0051098;regulation of binding;0.027112693479501!GO:0008147;structural constituent of bone;0.02786451765985!GO:0006007;glucose catabolic process;0.02786451765985!GO:0046519;sphingoid metabolic process;0.0280465047712534!GO:0051235;maintenance of localization;0.0282050415132131!GO:0001725;stress fiber;0.0287655281264589!GO:0032432;actin filament bundle;0.0287655281264589!GO:0006629;lipid metabolic process;0.0287891075413198!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.029392775307942!GO:0030145;manganese ion binding;0.0306280979053045!GO:0006749;glutathione metabolic process;0.0306669055202804!GO:0016272;prefoldin complex;0.0309401959257663!GO:0007517;muscle development;0.030963645645281!GO:0008047;enzyme activator activity;0.0312509425125434!GO:0006458;'de novo' protein folding;0.0321016383442479!GO:0051084;'de novo' posttranslational protein folding;0.0321016383442479!GO:0007346;regulation of progression through mitotic cell cycle;0.0326161294664899!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0329649565839585!GO:0008139;nuclear localization sequence binding;0.0345550744323068!GO:0018193;peptidyl-amino acid modification;0.034863725033862!GO:0006807;nitrogen compound metabolic process;0.034863725033862!GO:0051128;regulation of cellular component organization and biogenesis;0.0354264785264402!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0355421686326668!GO:0000030;mannosyltransferase activity;0.0355927068950801!GO:0006612;protein targeting to membrane;0.0370830702234928!GO:0007265;Ras protein signal transduction;0.0373138709633402!GO:0051287;NAD binding;0.0373330079028061!GO:0005813;centrosome;0.0378323949002656!GO:0048471;perinuclear region of cytoplasm;0.0378558056865855!GO:0051651;maintenance of cellular localization;0.0384104103639756!GO:0005100;Rho GTPase activator activity;0.0400449442798788!GO:0042158;lipoprotein biosynthetic process;0.0405876679674534!GO:0033673;negative regulation of kinase activity;0.0412708172864542!GO:0006469;negative regulation of protein kinase activity;0.0412708172864542!GO:0051168;nuclear export;0.0426511650330442!GO:0008186;RNA-dependent ATPase activity;0.0427183660963396!GO:0050657;nucleic acid transport;0.0427183660963396!GO:0051236;establishment of RNA localization;0.0427183660963396!GO:0050658;RNA transport;0.0427183660963396!GO:0051348;negative regulation of transferase activity;0.043011644017238!GO:0006950;response to stress;0.0435344293823184!GO:0016197;endosome transport;0.0436795917943126!GO:0006672;ceramide metabolic process;0.0458447968825897!GO:0030833;regulation of actin filament polymerization;0.0458876015490697!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0475132334497712!GO:0006403;RNA localization;0.0475132334497712!GO:0030521;androgen receptor signaling pathway;0.0477655316491587!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.047901031742744!GO:0007167;enzyme linked receptor protein signaling pathway;0.0481493171052744!GO:0030032;lamellipodium biogenesis;0.0488966801889707!GO:0005975;carbohydrate metabolic process;0.0498447892033127 | |||
|sample_id=11604 | |sample_id=11604 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 105: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=RXRA_VDR{dimer}:3.91450360805;TFAP4:2.55536102845;GLI1..3:2.22161766621;ESR1:2.15961476932;ZNF423:2.05301844071;ZNF238:1.93604989398;TFCP2:1.91721790367;GTF2A1,2:1.916024747;TAL1_TCF{3,4,12}:1.84144645238;EBF1:1.80467478197;ZNF148:1.79781609595;SRF:1.66823037426;HOX{A5,B5}:1.58296086085;SMAD1..7,9:1.49499045328;TLX1..3_NFIC{dimer}:1.43507708392;ZIC1..3:1.41424553699;HES1:1.38085986038;NR5A1,2:1.37376516118;TEAD1:1.30153158915;RXR{A,B,G}:1.24848936015;TFAP2{A,C}:1.18363591099;PBX1:1.14242547449;PAX5:1.11137234307;GZF1:1.09839233237;RREB1:1.07160266186;IKZF1:1.04318865799;TBP:1.04307583296;HOXA9_MEIS1:1.02212000939;XCPE1{core}:0.948013525281;HIC1:0.946048052209;HOX{A6,A7,B6,B7}:0.893991345832;GTF2I:0.877727148179;LMO2:0.837743086406;HAND1,2:0.836364347116;TP53:0.781395190262;REST:0.719642586056;PATZ1:0.716969870095;ATF6:0.700395820152;MEF2{A,B,C,D}:0.672193926486;SOX17:0.634169981815;ESRRA:0.618928737826;FOXM1:0.58635587293;TOPORS:0.578859642129;NR6A1:0.556192812191;MAZ:0.54906190341;TFAP2B:0.509043263399;UFEwm:0.498060446939;GCM1,2:0.494200849829;NR3C1:0.485344814308;CRX:0.473956309081;NANOG:0.455806087818;XBP1:0.449236205918;ZBTB6:0.439067965711;LHX3,4:0.419673662622;KLF4:0.405787947316;NHLH1,2:0.403812583468;LEF1_TCF7_TCF7L1,2:0.401121488346;GFI1B:0.376531709964;SP1:0.319394818629;bHLH_family:0.298861452277;NKX3-1:0.289607355288;TBX4,5:0.270216771716;SPZ1:0.241037293849;HNF4A_NR2F1,2:0.239988142209;EP300:0.23848092917;MTE{core}:0.196998068597;HNF1A:0.194088406681;PAX1,9:0.192550695552;NANOG{mouse}:0.191382100729;SOX5:0.168853839917;ONECUT1,2:0.148160075538;STAT5{A,B}:0.134893857892;GFI1:0.0803249043207;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0640079631892;NKX2-3_NKX2-5:0.0600863165524;MZF1:0.0579114979286;GATA6:0.0368494434058;DBP:0.0329894206404;MAFB:0.0269775676132;AR:0.0269577712466;POU2F1..3:0.00343143814264;STAT2,4,6:-0.00506946796134;MYOD1:-0.00772430362975;MTF1:-0.01368620801;SNAI1..3:-0.0656121403059;NR1H4:-0.0672204944829;SOX{8,9,10}:-0.0896840090315;RFX1:-0.0942579116195;EGR1..3:-0.10688215291;RORA:-0.113586722286;MED-1{core}:-0.123915403938;HMX1:-0.124055577716;JUN:-0.138662987448;BACH2:-0.138912889875;NFIL3:-0.146670028993;NFE2L2:-0.149723509629;HSF1,2:-0.157826498839;NFATC1..3:-0.171600149258;FOS_FOS{B,L1}_JUN{B,D}:-0.176469613715;EN1,2:-0.184879259243;MYFfamily:-0.191559678786;NKX2-2,8:-0.202493823601;HLF:-0.203571698659;ALX4:-0.219515876366;PAX6:-0.219628825505;RUNX1..3:-0.222083909963;NFE2:-0.246687989599;NFKB1_REL_RELA:-0.258845420045;CDX1,2,4:-0.274734913997;CDC5L:-0.284733211444;YY1:-0.293743164754;FOX{F1,F2,J1}:-0.311318415171;ETS1,2:-0.312466724134;POU6F1:-0.321948195117;NKX3-2:-0.3265849723;NFE2L1:-0.330432116905;MYBL2:-0.344758304661;TLX2:-0.352068683299;POU3F1..4:-0.353213606261;PPARG:-0.356715756577;HOX{A4,D4}:-0.377218841625;FOXP3:-0.400221250068;PAX3,7:-0.433031064413;NFIX:-0.435030916713;SPIB:-0.447789376481;FOSL2:-0.466354525156;PRRX1,2:-0.471026566804;GATA4:-0.479196666254;ZNF384:-0.545881077371;PAX8:-0.582253297533;POU5F1:-0.603360064659;ZNF143:-0.612086880227;CEBPA,B_DDIT3:-0.612333482513;NFY{A,B,C}:-0.614577668933;PRDM1:-0.625025861785;NKX2-1,4:-0.635222517302;FOX{D1,D2}:-0.661990808998;TGIF1:-0.667643153472;FOXA2:-0.713926818308;PAX2:-0.721525052824;CUX2:-0.7319962867;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.748013876263;OCT4_SOX2{dimer}:-0.766647402612;ATF2:-0.775595860976;EVI1:-0.782628603343;E2F1..5:-0.78888921245;SPI1:-0.830195205363;IRF1,2:-0.833434729299;ZEB1:-0.859591567925;FOXL1:-0.902275104404;HMGA1,2:-0.990775256019;AIRE:-0.999686035273;T:-1.00208408841;BREu{core}:-1.04499100931;SOX2:-1.04527987345;NKX6-1,2:-1.04642881467;ARID5B:-1.0796648157;ATF4:-1.08166318574;RFX2..5_RFXANK_RFXAP:-1.10683137143;MYB:-1.11573262518;PITX1..3:-1.12688073068;ZFP161:-1.14980445948;FOXQ1:-1.20174235682;IRF7:-1.26744057001;HIF1A:-1.27386384815;POU1F1:-1.27750020989;BPTF:-1.29517157651;TFDP1:-1.30996154089;DMAP1_NCOR{1,2}_SMARC:-1.3208400799;ADNP_IRX_SIX_ZHX:-1.33135978509;FOXP1:-1.34824564558;AHR_ARNT_ARNT2:-1.36302343203;VSX1,2:-1.36463220413;NRF1:-1.39943082213;FOXO1,3,4:-1.399665455;RBPJ:-1.40888628966;HBP1_HMGB_SSRP1_UBTF:-1.41192481721;ATF5_CREB3:-1.41716175954;ALX1:-1.41884012125;CREB1:-1.4262370049;FOXD3:-1.486620304;ELF1,2,4:-1.50014106125;SREBF1,2:-1.56744980221;IKZF2:-1.57028777479;STAT1,3:-1.58936629089;FOX{I1,J2}:-1.60580203384;ELK1,4_GABP{A,B1}:-1.73420567401;TEF:-1.75349022418;ZBTB16:-1.90630618586;PDX1:-2.02380708477;PAX4:-2.02440681639;FOXN1:-2.32374163712 | |top_motifs=RXRA_VDR{dimer}:3.91450360805;TFAP4:2.55536102845;GLI1..3:2.22161766621;ESR1:2.15961476932;ZNF423:2.05301844071;ZNF238:1.93604989398;TFCP2:1.91721790367;GTF2A1,2:1.916024747;TAL1_TCF{3,4,12}:1.84144645238;EBF1:1.80467478197;ZNF148:1.79781609595;SRF:1.66823037426;HOX{A5,B5}:1.58296086085;SMAD1..7,9:1.49499045328;TLX1..3_NFIC{dimer}:1.43507708392;ZIC1..3:1.41424553699;HES1:1.38085986038;NR5A1,2:1.37376516118;TEAD1:1.30153158915;RXR{A,B,G}:1.24848936015;TFAP2{A,C}:1.18363591099;PBX1:1.14242547449;PAX5:1.11137234307;GZF1:1.09839233237;RREB1:1.07160266186;IKZF1:1.04318865799;TBP:1.04307583296;HOXA9_MEIS1:1.02212000939;XCPE1{core}:0.948013525281;HIC1:0.946048052209;HOX{A6,A7,B6,B7}:0.893991345832;GTF2I:0.877727148179;LMO2:0.837743086406;HAND1,2:0.836364347116;TP53:0.781395190262;REST:0.719642586056;PATZ1:0.716969870095;ATF6:0.700395820152;MEF2{A,B,C,D}:0.672193926486;SOX17:0.634169981815;ESRRA:0.618928737826;FOXM1:0.58635587293;TOPORS:0.578859642129;NR6A1:0.556192812191;MAZ:0.54906190341;TFAP2B:0.509043263399;UFEwm:0.498060446939;GCM1,2:0.494200849829;NR3C1:0.485344814308;CRX:0.473956309081;NANOG:0.455806087818;XBP1:0.449236205918;ZBTB6:0.439067965711;LHX3,4:0.419673662622;KLF4:0.405787947316;NHLH1,2:0.403812583468;LEF1_TCF7_TCF7L1,2:0.401121488346;GFI1B:0.376531709964;SP1:0.319394818629;bHLH_family:0.298861452277;NKX3-1:0.289607355288;TBX4,5:0.270216771716;SPZ1:0.241037293849;HNF4A_NR2F1,2:0.239988142209;EP300:0.23848092917;MTE{core}:0.196998068597;HNF1A:0.194088406681;PAX1,9:0.192550695552;NANOG{mouse}:0.191382100729;SOX5:0.168853839917;ONECUT1,2:0.148160075538;STAT5{A,B}:0.134893857892;GFI1:0.0803249043207;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0640079631892;NKX2-3_NKX2-5:0.0600863165524;MZF1:0.0579114979286;GATA6:0.0368494434058;DBP:0.0329894206404;MAFB:0.0269775676132;AR:0.0269577712466;POU2F1..3:0.00343143814264;STAT2,4,6:-0.00506946796134;MYOD1:-0.00772430362975;MTF1:-0.01368620801;SNAI1..3:-0.0656121403059;NR1H4:-0.0672204944829;SOX{8,9,10}:-0.0896840090315;RFX1:-0.0942579116195;EGR1..3:-0.10688215291;RORA:-0.113586722286;MED-1{core}:-0.123915403938;HMX1:-0.124055577716;JUN:-0.138662987448;BACH2:-0.138912889875;NFIL3:-0.146670028993;NFE2L2:-0.149723509629;HSF1,2:-0.157826498839;NFATC1..3:-0.171600149258;FOS_FOS{B,L1}_JUN{B,D}:-0.176469613715;EN1,2:-0.184879259243;MYFfamily:-0.191559678786;NKX2-2,8:-0.202493823601;HLF:-0.203571698659;ALX4:-0.219515876366;PAX6:-0.219628825505;RUNX1..3:-0.222083909963;NFE2:-0.246687989599;NFKB1_REL_RELA:-0.258845420045;CDX1,2,4:-0.274734913997;CDC5L:-0.284733211444;YY1:-0.293743164754;FOX{F1,F2,J1}:-0.311318415171;ETS1,2:-0.312466724134;POU6F1:-0.321948195117;NKX3-2:-0.3265849723;NFE2L1:-0.330432116905;MYBL2:-0.344758304661;TLX2:-0.352068683299;POU3F1..4:-0.353213606261;PPARG:-0.356715756577;HOX{A4,D4}:-0.377218841625;FOXP3:-0.400221250068;PAX3,7:-0.433031064413;NFIX:-0.435030916713;SPIB:-0.447789376481;FOSL2:-0.466354525156;PRRX1,2:-0.471026566804;GATA4:-0.479196666254;ZNF384:-0.545881077371;PAX8:-0.582253297533;POU5F1:-0.603360064659;ZNF143:-0.612086880227;CEBPA,B_DDIT3:-0.612333482513;NFY{A,B,C}:-0.614577668933;PRDM1:-0.625025861785;NKX2-1,4:-0.635222517302;FOX{D1,D2}:-0.661990808998;TGIF1:-0.667643153472;FOXA2:-0.713926818308;PAX2:-0.721525052824;CUX2:-0.7319962867;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.748013876263;OCT4_SOX2{dimer}:-0.766647402612;ATF2:-0.775595860976;EVI1:-0.782628603343;E2F1..5:-0.78888921245;SPI1:-0.830195205363;IRF1,2:-0.833434729299;ZEB1:-0.859591567925;FOXL1:-0.902275104404;HMGA1,2:-0.990775256019;AIRE:-0.999686035273;T:-1.00208408841;BREu{core}:-1.04499100931;SOX2:-1.04527987345;NKX6-1,2:-1.04642881467;ARID5B:-1.0796648157;ATF4:-1.08166318574;RFX2..5_RFXANK_RFXAP:-1.10683137143;MYB:-1.11573262518;PITX1..3:-1.12688073068;ZFP161:-1.14980445948;FOXQ1:-1.20174235682;IRF7:-1.26744057001;HIF1A:-1.27386384815;POU1F1:-1.27750020989;BPTF:-1.29517157651;TFDP1:-1.30996154089;DMAP1_NCOR{1,2}_SMARC:-1.3208400799;ADNP_IRX_SIX_ZHX:-1.33135978509;FOXP1:-1.34824564558;AHR_ARNT_ARNT2:-1.36302343203;VSX1,2:-1.36463220413;NRF1:-1.39943082213;FOXO1,3,4:-1.399665455;RBPJ:-1.40888628966;HBP1_HMGB_SSRP1_UBTF:-1.41192481721;ATF5_CREB3:-1.41716175954;ALX1:-1.41884012125;CREB1:-1.4262370049;FOXD3:-1.486620304;ELF1,2,4:-1.50014106125;SREBF1,2:-1.56744980221;IKZF2:-1.57028777479;STAT1,3:-1.58936629089;FOX{I1,J2}:-1.60580203384;ELK1,4_GABP{A,B1}:-1.73420567401;TEF:-1.75349022418;ZBTB16:-1.90630618586;PDX1:-2.02380708477;PAX4:-2.02440681639;FOXN1:-2.32374163712 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11604-120I2;search_select_hide=table117:FF:11604-120I2 | |||
}} | }} | ||
Latest revision as of 18:11, 4 June 2020
| Name: | Hepatic Stellate Cells (lipocyte), donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12093 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12093
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12093
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.651 |
| 10 | 10 | 0.588 |
| 100 | 100 | 0.655 |
| 101 | 101 | 0.827 |
| 102 | 102 | 0.476 |
| 103 | 103 | 0.417 |
| 104 | 104 | 0.217 |
| 105 | 105 | 0.202 |
| 106 | 106 | 0.025 |
| 107 | 107 | 0.0114 |
| 108 | 108 | 0.456 |
| 109 | 109 | 0.263 |
| 11 | 11 | 0.0778 |
| 110 | 110 | 0.146 |
| 111 | 111 | 0.96 |
| 112 | 112 | 0.705 |
| 113 | 113 | 0.428 |
| 114 | 114 | 0.395 |
| 115 | 115 | 0.106 |
| 116 | 116 | 0.0838 |
| 117 | 117 | 0.995 |
| 118 | 118 | 0.722 |
| 119 | 119 | 0.41 |
| 12 | 12 | 0.934 |
| 120 | 120 | 0.402 |
| 121 | 121 | 0.812 |
| 122 | 122 | 0.974 |
| 123 | 123 | 0.288 |
| 124 | 124 | 0.311 |
| 125 | 125 | 0.45 |
| 126 | 126 | 0.615 |
| 127 | 127 | 0.541 |
| 128 | 128 | 0.0465 |
| 129 | 129 | 0.199 |
| 13 | 13 | 0.581 |
| 130 | 130 | 0.535 |
| 131 | 131 | 0.511 |
| 132 | 132 | 0.249 |
| 133 | 133 | 0.815 |
| 134 | 134 | 0.198 |
| 135 | 135 | 0.183 |
| 136 | 136 | 0.669 |
| 137 | 137 | 0.144 |
| 138 | 138 | 0.905 |
| 139 | 139 | 0.0997 |
| 14 | 14 | 0.699 |
| 140 | 140 | 0.674 |
| 141 | 141 | 0.717 |
| 142 | 142 | 0.588 |
| 143 | 143 | 0.104 |
| 144 | 144 | 0.8 |
| 145 | 145 | 0.418 |
| 146 | 146 | 0.413 |
| 147 | 147 | 0.173 |
| 148 | 148 | 0.981 |
| 149 | 149 | 0.0034 |
| 15 | 15 | 0.805 |
| 150 | 150 | 0.39 |
| 151 | 151 | 0.343 |
| 152 | 152 | 0.126 |
| 153 | 153 | 0.646 |
| 154 | 154 | 0.567 |
| 155 | 155 | 0.694 |
| 156 | 156 | 0.938 |
| 157 | 157 | 0.217 |
| 158 | 158 | 0.652 |
| 159 | 159 | 0.478 |
| 16 | 16 | 0.108 |
| 160 | 160 | 0.0185 |
| 161 | 161 | 0.421 |
| 162 | 162 | 0.0815 |
| 163 | 163 | 0.952 |
| 164 | 164 | 0.821 |
| 165 | 165 | 0.242 |
| 166 | 166 | 0.431 |
| 167 | 167 | 0.043 |
| 168 | 168 | 0.511 |
| 169 | 169 | 0.0402 |
| 17 | 17 | 0.231 |
| 18 | 18 | 0.0926 |
| 19 | 19 | 0.0365 |
| 2 | 2 | 0.159 |
| 20 | 20 | 0.377 |
| 21 | 21 | 0.488 |
| 22 | 22 | 0.0856 |
| 23 | 23 | 0.123 |
| 24 | 24 | 0.991 |
| 25 | 25 | 0.659 |
| 26 | 26 | 0.0766 |
| 27 | 27 | 0.265 |
| 28 | 28 | 0.388 |
| 29 | 29 | 0.95 |
| 3 | 3 | 0.587 |
| 30 | 30 | 0.173 |
| 31 | 31 | 0.323 |
| 32 | 32 | 3.85586e-9 |
| 33 | 33 | 0.892 |
| 34 | 34 | 0.144 |
| 35 | 35 | 0.916 |
| 36 | 36 | 0.513 |
| 37 | 37 | 0.311 |
| 38 | 38 | 0.366 |
| 39 | 39 | 0.345 |
| 4 | 4 | 0.489 |
| 40 | 40 | 0.0943 |
| 41 | 41 | 0.683 |
| 42 | 42 | 0.837 |
| 43 | 43 | 0.218 |
| 44 | 44 | 0.298 |
| 45 | 45 | 0.211 |
| 46 | 46 | 0.135 |
| 47 | 47 | 0.426 |
| 48 | 48 | 0.286 |
| 49 | 49 | 0.216 |
| 5 | 5 | 0.658 |
| 50 | 50 | 0.393 |
| 51 | 51 | 0.272 |
| 52 | 52 | 0.208 |
| 53 | 53 | 0.989 |
| 54 | 54 | 0.31 |
| 55 | 55 | 0.36 |
| 56 | 56 | 0.291 |
| 57 | 57 | 0.388 |
| 58 | 58 | 0.948 |
| 59 | 59 | 0.0336 |
| 6 | 6 | 0.396 |
| 60 | 60 | 0.214 |
| 61 | 61 | 0.976 |
| 62 | 62 | 0.631 |
| 63 | 63 | 0.204 |
| 64 | 64 | 0.267 |
| 65 | 65 | 0.0385 |
| 66 | 66 | 0.915 |
| 67 | 67 | 0.467 |
| 68 | 68 | 0.0382 |
| 69 | 69 | 0.0681 |
| 7 | 7 | 0.656 |
| 70 | 70 | 0.0485 |
| 71 | 71 | 0.226 |
| 72 | 72 | 0.896 |
| 73 | 73 | 0.19 |
| 74 | 74 | 0.124 |
| 75 | 75 | 0.682 |
| 76 | 76 | 0.456 |
| 77 | 77 | 0.0371 |
| 78 | 78 | 0.771 |
| 79 | 79 | 0.00738 |
| 8 | 8 | 0.101 |
| 80 | 80 | 0.67 |
| 81 | 81 | 0.512 |
| 82 | 82 | 0.157 |
| 83 | 83 | 0.908 |
| 84 | 84 | 0.32 |
| 85 | 85 | 0.053 |
| 86 | 86 | 0.958 |
| 87 | 87 | 0.678 |
| 88 | 88 | 0.269 |
| 89 | 89 | 0.0826 |
| 9 | 9 | 0.127 |
| 90 | 90 | 0.429 |
| 91 | 91 | 0.302 |
| 92 | 92 | 0.224 |
| 93 | 93 | 0.473 |
| 94 | 94 | 0.412 |
| 95 | 95 | 0.566 |
| 96 | 96 | 0.769 |
| 97 | 97 | 0.315 |
| 98 | 98 | 0.62 |
| 99 | 99 | 0.011 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12093
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000077 hepatic stellate cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000632 (hepatic stellate cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000077 (hepatic stellate cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
