FF:10541-107H1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005680 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005680 | ||
|ancestors_in_disease_facet=DOID:0050615,DOID: | |accession_numbers=CAGE;DRX008007;DRR008879;DRZ000304;DRZ001689;DRZ011654;DRZ013039 | ||
|accession_numbers_RNASeq=RNA-Seq;DRX057129;DRR062888;DRZ007964 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1325,DOID:3905,DOID:5409,DOID:3904 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0102061,FF:0101120,FF:0100762,FF:0102206,FF:0100189 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100353,FF:0101120 | |fonse_cell_line=FF:0100353,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100353,FF:0101120 | |fonse_cell_line_closure=FF:0100353,FF:0101120 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aLK-2.CNhs11285.10541-107H1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aLK-2.CNhs11285.10541-107H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aLK-2.CNhs11285.10541-107H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aLK-2.CNhs11285.10541-107H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aLK-2.CNhs11285.10541-107H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10541-107H1 | |id=FF:10541-107H1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100189;;FF:0102206 | ||
|is_obsolete= | |||
|library_id=CNhs11285 | |||
|library_id_phase_based=2:CNhs11285 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10541 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10541 | |||
|name=small cell lung carcinoma cell line:LK-2 | |name=small cell lung carcinoma cell line:LK-2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11285,LSID759,release008,COMPLETED | |profile_hcage=CNhs11285,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.27483329820609,-0.259166498104179,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0514837713225317,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.273727926348223,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.0970958958513124,0,0,0,0,0,0,0,0,0.0464741249455258,0,0,0,0.0464741249455258,0.0884522690358478,0,0,0,0,0.125177186484827,0,0.0464741249455258,0,0,0,-0.107597510191431,0,0,0,0.215612875276158,-0.187960340223106,0,0.0464741249455258,0,0,0.12667286795879,-0.115240138328132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136324033398407,0.0464741249455258,0,0,-0.120363361256814,-0.31066841586484,0,0,0,0,0,0 | |||
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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 79: | ||
|rna_tube_id=107H1 | |rna_tube_id=107H1 | ||
|rna_weight_ug=59.8185 | |rna_weight_ug=59.8185 | ||
|rnaseq_library_id=RDhi10072 | |||
|sample_age=74 | |sample_age=74 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1970 | |sample_cell_catalog=RCB1970 | ||
|sample_cell_line=LK-2 | |sample_cell_line=LK-2 | ||
| Line 69: | Line 94: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.25646730586995e-289!GO:0043226;organelle;8.07960532561027e-247!GO:0043229;intracellular organelle;3.52478210145577e-246!GO:0043231;intracellular membrane-bound organelle;1.55899109781503e-244!GO:0043227;membrane-bound organelle;2.76945038220005e-244!GO:0044422;organelle part;2.35187610898383e-171!GO:0044446;intracellular organelle part;1.08307980229203e-169!GO:0005737;cytoplasm;1.87497251316741e-162!GO:0005634;nucleus;1.10607717451209e-130!GO:0032991;macromolecular complex;1.76014226310631e-114!GO:0044237;cellular metabolic process;1.94957137050171e-112!GO:0044444;cytoplasmic part;5.20496422730559e-111!GO:0044238;primary metabolic process;6.05473131547781e-110!GO:0043170;macromolecule metabolic process;2.3781322563412e-102!GO:0044428;nuclear part;1.00877622297211e-101!GO:0030529;ribonucleoprotein complex;3.98908125214014e-99!GO:0043233;organelle lumen;2.7401289636898e-92!GO:0031974;membrane-enclosed lumen;2.7401289636898e-92!GO:0003723;RNA binding;1.70518356905849e-91!GO:0043283;biopolymer metabolic process;5.16604973395867e-73!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.64148591405947e-71!GO:0005739;mitochondrion;7.73891507165143e-71!GO:0010467;gene expression;3.34547707099673e-69!GO:0005515;protein binding;5.43322018621898e-67!GO:0006396;RNA processing;2.59009541374919e-66!GO:0031981;nuclear lumen;3.66841027776851e-61!GO:0043234;protein complex;1.26880806253501e-56!GO:0005840;ribosome;1.45531069837999e-55!GO:0016043;cellular component organization and biogenesis;5.69805833637452e-51!GO:0003676;nucleic acid binding;2.55328005074953e-50!GO:0006412;translation;3.83305307590873e-50!GO:0016071;mRNA metabolic process;7.62613283873606e-50!GO:0044429;mitochondrial part;2.70044997042884e-47!GO:0003735;structural constituent of ribosome;2.72032806131362e-47!GO:0006259;DNA metabolic process;9.8097739985955e-47!GO:0008380;RNA splicing;3.29998886561814e-46!GO:0043228;non-membrane-bound organelle;9.11064899201402e-46!GO:0043232;intracellular non-membrane-bound organelle;9.11064899201402e-46!GO:0033036;macromolecule localization;2.98811066670432e-45!GO:0031090;organelle membrane;5.08587018977586e-45!GO:0015031;protein transport;8.65061594490301e-44!GO:0006397;mRNA processing;4.48872555720572e-43!GO:0031967;organelle envelope;5.39984150592822e-43!GO:0006996;organelle organization and biogenesis;6.03550582374965e-43!GO:0031975;envelope;9.89800811001521e-43!GO:0033279;ribosomal subunit;2.53896279953252e-41!GO:0019538;protein metabolic process;8.13068747497283e-41!GO:0008104;protein localization;3.74654764216012e-40!GO:0044249;cellular biosynthetic process;2.33897336687167e-39!GO:0005654;nucleoplasm;3.90445757416015e-39!GO:0045184;establishment of protein localization;8.72195318866618e-39!GO:0007049;cell cycle;1.31182398319043e-37!GO:0016070;RNA metabolic process;1.39534714440657e-37!GO:0009058;biosynthetic process;7.74720774047762e-37!GO:0044267;cellular protein metabolic process;1.58004624890911e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.65847907295832e-36!GO:0065003;macromolecular complex assembly;3.18558529556459e-36!GO:0044260;cellular macromolecule metabolic process;5.06294866300345e-36!GO:0009059;macromolecule biosynthetic process;1.25745367445455e-34!GO:0005829;cytosol;1.84394258373823e-34!GO:0046907;intracellular transport;1.90890628218745e-34!GO:0005681;spliceosome;1.92693235424015e-32!GO:0022607;cellular component assembly;2.53878651086564e-32!GO:0044451;nucleoplasm part;4.0711486741357e-32!GO:0000166;nucleotide binding;2.65278085118804e-31!GO:0005694;chromosome;6.60137469500042e-30!GO:0006974;response to DNA damage stimulus;8.57454735617213e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.49773989136925e-28!GO:0005740;mitochondrial envelope;2.91414557043213e-28!GO:0019866;organelle inner membrane;6.744955334835e-28!GO:0006886;intracellular protein transport;1.90651831390056e-27!GO:0022402;cell cycle process;2.39955118117109e-27!GO:0000278;mitotic cell cycle;2.62245708814368e-27!GO:0031966;mitochondrial membrane;2.52133668531943e-26!GO:0044427;chromosomal part;1.42060459514088e-25!GO:0051276;chromosome organization and biogenesis;1.55304282739298e-25!GO:0005743;mitochondrial inner membrane;2.59837788590971e-25!GO:0006281;DNA repair;9.40940325319337e-25!GO:0051649;establishment of cellular localization;2.00368968335423e-24!GO:0051641;cellular localization;9.73524868472131e-24!GO:0031980;mitochondrial lumen;4.32261665021656e-23!GO:0005759;mitochondrial matrix;4.32261665021656e-23!GO:0016874;ligase activity;8.2650076262834e-23!GO:0000087;M phase of mitotic cell cycle;8.2650076262834e-23!GO:0007067;mitosis;2.40392743745951e-22!GO:0022403;cell cycle phase;3.56450123648402e-22!GO:0005730;nucleolus;3.94202779006171e-22!GO:0006512;ubiquitin cycle;4.97893164760799e-22!GO:0044445;cytosolic part;6.95157077557669e-22!GO:0015934;large ribosomal subunit;8.08930092457809e-22!GO:0051301;cell division;3.08966001994232e-21!GO:0006119;oxidative phosphorylation;5.19770629406619e-21!GO:0016462;pyrophosphatase activity;5.60730771098552e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.22634572112826e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;8.22634572112826e-21!GO:0006511;ubiquitin-dependent protein catabolic process;1.01697637054004e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;1.25638233958582e-20!GO:0015935;small ribosomal subunit;1.64337040106522e-20!GO:0019941;modification-dependent protein catabolic process;2.07650937350476e-20!GO:0043632;modification-dependent macromolecule catabolic process;2.07650937350476e-20!GO:0032553;ribonucleotide binding;3.05768762814045e-20!GO:0032555;purine ribonucleotide binding;3.05768762814045e-20!GO:0044455;mitochondrial membrane part;3.05768762814045e-20!GO:0017111;nucleoside-triphosphatase activity;3.72494650079272e-20!GO:0022618;protein-RNA complex assembly;4.93997949991644e-20!GO:0044257;cellular protein catabolic process;5.20768544633204e-20!GO:0009719;response to endogenous stimulus;5.59595745067398e-20!GO:0044265;cellular macromolecule catabolic process;1.02730868188624e-19!GO:0006457;protein folding;1.12336549902512e-19!GO:0006325;establishment and/or maintenance of chromatin architecture;1.39292071641414e-19!GO:0017076;purine nucleotide binding;1.53970338593185e-19!GO:0000279;M phase;2.89018721549263e-19!GO:0006323;DNA packaging;9.05746709845306e-19!GO:0006260;DNA replication;1.34816251908172e-18!GO:0012505;endomembrane system;5.99875632275772e-18!GO:0005524;ATP binding;1.23234823456693e-17!GO:0042254;ribosome biogenesis and assembly;1.79278161415677e-17!GO:0032559;adenyl ribonucleotide binding;2.66876018215138e-17!GO:0005761;mitochondrial ribosome;2.68241208318519e-17!GO:0000313;organellar ribosome;2.68241208318519e-17!GO:0008134;transcription factor binding;2.72470977765689e-17!GO:0008135;translation factor activity, nucleic acid binding;2.91633003936838e-17!GO:0043285;biopolymer catabolic process;9.65629178003567e-17!GO:0030554;adenyl nucleotide binding;2.23390610029379e-16!GO:0005746;mitochondrial respiratory chain;3.5717324663004e-16!GO:0031965;nuclear membrane;4.92827054273803e-16!GO:0006366;transcription from RNA polymerase II promoter;5.36603725255166e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;6.1651750547463e-16!GO:0000375;RNA splicing, via transesterification reactions;6.1651750547463e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.1651750547463e-16!GO:0044453;nuclear membrane part;2.03510373943117e-15!GO:0005635;nuclear envelope;2.17963298932552e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.32025527985565e-15!GO:0043412;biopolymer modification;3.71121998923606e-15!GO:0006605;protein targeting;4.08754532453842e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.19514682452411e-15!GO:0044248;cellular catabolic process;9.46383724536975e-15!GO:0009057;macromolecule catabolic process;9.46383724536975e-15!GO:0016604;nuclear body;1.74486427341057e-14!GO:0030163;protein catabolic process;2.00528556016429e-14!GO:0016887;ATPase activity;2.54344131184263e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.20247391224694e-14!GO:0003954;NADH dehydrogenase activity;3.20247391224694e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.20247391224694e-14!GO:0006403;RNA localization;4.43483864841799e-14!GO:0042623;ATPase activity, coupled;4.5978849364818e-14!GO:0050657;nucleic acid transport;4.5978849364818e-14!GO:0051236;establishment of RNA localization;4.5978849364818e-14!GO:0050658;RNA transport;4.5978849364818e-14!GO:0000785;chromatin;5.29779636604692e-14!GO:0005643;nuclear pore;5.96038222678686e-14!GO:0004386;helicase activity;6.72944841222028e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.31351618080879e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.40667954003157e-13!GO:0048770;pigment granule;1.82100976773543e-13!GO:0042470;melanosome;1.82100976773543e-13!GO:0006399;tRNA metabolic process;2.99217256702117e-13!GO:0003743;translation initiation factor activity;4.01103552863429e-13!GO:0016568;chromatin modification;4.72749053252134e-13!GO:0006464;protein modification process;6.98317998676384e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.36488183281176e-12!GO:0042773;ATP synthesis coupled electron transport;1.36488183281176e-12!GO:0051082;unfolded protein binding;1.41857436287369e-12!GO:0000074;regulation of progression through cell cycle;1.9254659736132e-12!GO:0051726;regulation of cell cycle;1.95674881476083e-12!GO:0015630;microtubule cytoskeleton;2.24232209701315e-12!GO:0006413;translational initiation;2.61600254058176e-12!GO:0006333;chromatin assembly or disassembly;2.74255476686424e-12!GO:0065004;protein-DNA complex assembly;3.34006689241813e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.40546440398891e-12!GO:0045271;respiratory chain complex I;3.40546440398891e-12!GO:0005747;mitochondrial respiratory chain complex I;3.40546440398891e-12!GO:0051186;cofactor metabolic process;3.9372401239283e-12!GO:0016607;nuclear speck;4.24645422073663e-12!GO:0008026;ATP-dependent helicase activity;4.67027185825677e-12!GO:0006364;rRNA processing;4.96298166324788e-12!GO:0051028;mRNA transport;5.18134986455697e-12!GO:0048193;Golgi vesicle transport;5.1938683242348e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.57312541254839e-12!GO:0043687;post-translational protein modification;6.3243883745831e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.90357891426424e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.69948091633318e-12!GO:0006913;nucleocytoplasmic transport;9.8504760832705e-12!GO:0005783;endoplasmic reticulum;1.00325779410928e-11!GO:0016072;rRNA metabolic process;1.37240406204782e-11!GO:0006446;regulation of translational initiation;1.72841256500668e-11!GO:0008639;small protein conjugating enzyme activity;1.84459528201741e-11!GO:0019222;regulation of metabolic process;1.84459528201741e-11!GO:0051169;nuclear transport;2.44161978153781e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.93836326608931e-11!GO:0003712;transcription cofactor activity;2.97517437166135e-11!GO:0004842;ubiquitin-protein ligase activity;3.25695371706608e-11!GO:0046930;pore complex;3.39328127327362e-11!GO:0044432;endoplasmic reticulum part;5.75132562021314e-11!GO:0065002;intracellular protein transport across a membrane;5.9340731233433e-11!GO:0019787;small conjugating protein ligase activity;8.32172430302679e-11!GO:0005794;Golgi apparatus;1.43360879539665e-10!GO:0005667;transcription factor complex;1.60137595374953e-10!GO:0006732;coenzyme metabolic process;3.01524951849106e-10!GO:0006261;DNA-dependent DNA replication;4.44765815385454e-10!GO:0000775;chromosome, pericentric region;8.028410500691e-10!GO:0008565;protein transporter activity;1.00289486038609e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.48152911013851e-09!GO:0009055;electron carrier activity;1.48519042649235e-09!GO:0016881;acid-amino acid ligase activity;1.53682291443181e-09!GO:0006350;transcription;2.02474926574003e-09!GO:0016192;vesicle-mediated transport;2.25583560710573e-09!GO:0006461;protein complex assembly;2.31335130401368e-09!GO:0005819;spindle;2.41371275841883e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.4159201354163e-09!GO:0031323;regulation of cellular metabolic process;2.55049804223145e-09!GO:0043566;structure-specific DNA binding;5.11478596867888e-09!GO:0032446;protein modification by small protein conjugation;5.84129056988386e-09!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.19562275710934e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.64488514232661e-09!GO:0004812;aminoacyl-tRNA ligase activity;7.64488514232661e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.64488514232661e-09!GO:0050794;regulation of cellular process;7.7245865843524e-09!GO:0030532;small nuclear ribonucleoprotein complex;8.03823033715647e-09!GO:0043038;amino acid activation;1.17024900243156e-08!GO:0006418;tRNA aminoacylation for protein translation;1.17024900243156e-08!GO:0043039;tRNA aminoacylation;1.17024900243156e-08!GO:0016567;protein ubiquitination;1.2236810117864e-08!GO:0009259;ribonucleotide metabolic process;1.82631475550674e-08!GO:0016779;nucleotidyltransferase activity;1.97362284645912e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.15250634227701e-08!GO:0006163;purine nucleotide metabolic process;2.19191460311412e-08!GO:0045333;cellular respiration;2.63539624960225e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.76879559333049e-08!GO:0003697;single-stranded DNA binding;2.93893221500359e-08!GO:0009060;aerobic respiration;3.08114210721517e-08!GO:0005789;endoplasmic reticulum membrane;3.73490384227446e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.01174436476058e-08!GO:0031324;negative regulation of cellular metabolic process;4.89315181294513e-08!GO:0007051;spindle organization and biogenesis;4.99597629779872e-08!GO:0005657;replication fork;5.11314897747038e-08!GO:0017038;protein import;5.69981069112893e-08!GO:0006164;purine nucleotide biosynthetic process;6.41644563983425e-08!GO:0051329;interphase of mitotic cell cycle;6.44042385188539e-08!GO:0015986;ATP synthesis coupled proton transport;7.75791008914519e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.75791008914519e-08!GO:0006334;nucleosome assembly;7.9293484581337e-08!GO:0007005;mitochondrion organization and biogenesis;8.72012064262658e-08!GO:0010468;regulation of gene expression;9.15262401917216e-08!GO:0000245;spliceosome assembly;9.80986463624496e-08!GO:0005813;centrosome;1.18441511502056e-07!GO:0009260;ribonucleotide biosynthetic process;1.32513954691473e-07!GO:0009150;purine ribonucleotide metabolic process;1.42583265516642e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.47725818659635e-07!GO:0031497;chromatin assembly;1.56476613050333e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.5658961107117e-07!GO:0000075;cell cycle checkpoint;1.56628367632408e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.92527813118295e-07!GO:0009141;nucleoside triphosphate metabolic process;2.23062786719954e-07!GO:0009892;negative regulation of metabolic process;2.32088013793448e-07!GO:0019829;cation-transporting ATPase activity;2.36222479432231e-07!GO:0051188;cofactor biosynthetic process;2.4236046769868e-07!GO:0016740;transferase activity;2.4236046769868e-07!GO:0051325;interphase;2.64263727925058e-07!GO:0009056;catabolic process;2.76262308578304e-07!GO:0000151;ubiquitin ligase complex;3.14487890228365e-07!GO:0005815;microtubule organizing center;3.48402141295954e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.17293932123404e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.4616906147111e-07!GO:0003899;DNA-directed RNA polymerase activity;5.70608770713094e-07!GO:0016564;transcription repressor activity;5.71174686090445e-07!GO:0008094;DNA-dependent ATPase activity;7.1444697648093e-07!GO:0006752;group transfer coenzyme metabolic process;7.49474099665251e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.92352831540179e-07!GO:0016563;transcription activator activity;8.37376411749426e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.55521943471381e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.55521943471381e-07!GO:0051168;nuclear export;9.78462476244978e-07!GO:0032774;RNA biosynthetic process;1.08119734355527e-06!GO:0006754;ATP biosynthetic process;1.13570428412925e-06!GO:0006753;nucleoside phosphate metabolic process;1.13570428412925e-06!GO:0046034;ATP metabolic process;1.35962994315117e-06!GO:0005793;ER-Golgi intermediate compartment;1.36621248837849e-06!GO:0003682;chromatin binding;1.37373175420678e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.39279807284384e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.39279807284384e-06!GO:0006351;transcription, DNA-dependent;1.53095923736624e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.71773262663482e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.71773262663482e-06!GO:0005768;endosome;1.72935156521356e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.74872234708792e-06!GO:0043623;cellular protein complex assembly;2.17877905205144e-06!GO:0003724;RNA helicase activity;2.18707982949061e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.39717809001217e-06!GO:0045259;proton-transporting ATP synthase complex;2.41328902916801e-06!GO:0005874;microtubule;2.6287704506688e-06!GO:0016481;negative regulation of transcription;2.89357763259148e-06!GO:0007017;microtubule-based process;3.1228795480516e-06!GO:0006099;tricarboxylic acid cycle;3.63473189405888e-06!GO:0046356;acetyl-CoA catabolic process;3.63473189405888e-06!GO:0000776;kinetochore;4.61793323183879e-06!GO:0003690;double-stranded DNA binding;4.71168394287034e-06!GO:0005762;mitochondrial large ribosomal subunit;4.9713396463489e-06!GO:0000315;organellar large ribosomal subunit;4.9713396463489e-06!GO:0006302;double-strand break repair;5.60247883800693e-06!GO:0003713;transcription coactivator activity;5.67712737257252e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.67712737257252e-06!GO:0009108;coenzyme biosynthetic process;5.8082129740704e-06!GO:0000226;microtubule cytoskeleton organization and biogenesis;5.93056434492237e-06!GO:0045449;regulation of transcription;6.19387423954653e-06!GO:0003729;mRNA binding;6.44406166473469e-06!GO:0016741;transferase activity, transferring one-carbon groups;6.44406166473469e-06!GO:0008168;methyltransferase activity;6.55145530079312e-06!GO:0006084;acetyl-CoA metabolic process;6.6122423309347e-06!GO:0007059;chromosome segregation;6.77765818585311e-06!GO:0009109;coenzyme catabolic process;6.77765818585311e-06!GO:0006915;apoptosis;6.99731075667416e-06!GO:0000314;organellar small ribosomal subunit;7.38546801560051e-06!GO:0005763;mitochondrial small ribosomal subunit;7.38546801560051e-06!GO:0009117;nucleotide metabolic process;7.46128098049215e-06!GO:0012501;programmed cell death;7.48062802134117e-06!GO:0008033;tRNA processing;8.25069886004752e-06!GO:0006613;cotranslational protein targeting to membrane;8.26219348089298e-06!GO:0016363;nuclear matrix;9.67858853547255e-06!GO:0003677;DNA binding;1.08867428834606e-05!GO:0006793;phosphorus metabolic process;1.2961751065342e-05!GO:0006796;phosphate metabolic process;1.2961751065342e-05!GO:0048475;coated membrane;1.54176674247776e-05!GO:0030117;membrane coat;1.54176674247776e-05!GO:0050789;regulation of biological process;1.81816298807752e-05!GO:0044440;endosomal part;2.40034254356288e-05!GO:0010008;endosome membrane;2.40034254356288e-05!GO:0003714;transcription corepressor activity;2.41672098463087e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.45467818608953e-05!GO:0048523;negative regulation of cellular process;3.02960941222797e-05!GO:0043021;ribonucleoprotein binding;3.25611023321082e-05!GO:0044431;Golgi apparatus part;3.79394967751746e-05!GO:0051170;nuclear import;3.86805262477755e-05!GO:0006352;transcription initiation;4.34677460998836e-05!GO:0003678;DNA helicase activity;4.97313049703958e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.36401237794318e-05!GO:0051187;cofactor catabolic process;5.59016174540008e-05!GO:0051427;hormone receptor binding;5.64501218867529e-05!GO:0006606;protein import into nucleus;5.8837566998082e-05!GO:0051052;regulation of DNA metabolic process;5.8837566998082e-05!GO:0045786;negative regulation of progression through cell cycle;6.1221453516464e-05!GO:0004527;exonuclease activity;6.25825029694742e-05!GO:0006383;transcription from RNA polymerase III promoter;6.40615761600085e-05!GO:0051246;regulation of protein metabolic process;7.0094764708922e-05!GO:0005770;late endosome;7.20717425746739e-05!GO:0005525;GTP binding;7.315274136419e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;8.03334316363383e-05!GO:0000228;nuclear chromosome;8.07391577491128e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.07667494232359e-05!GO:0044452;nucleolar part;8.60749323464181e-05!GO:0016251;general RNA polymerase II transcription factor activity;9.50715158957107e-05!GO:0016859;cis-trans isomerase activity;0.000107816510408709!GO:0003684;damaged DNA binding;0.000108684199627995!GO:0016310;phosphorylation;0.00011506232041702!GO:0035257;nuclear hormone receptor binding;0.000120137648524492!GO:0007052;mitotic spindle organization and biogenesis;0.000121518202213244!GO:0008219;cell death;0.000123764656527426!GO:0016265;death;0.000123764656527426!GO:0008654;phospholipid biosynthetic process;0.000124837117585375!GO:0006355;regulation of transcription, DNA-dependent;0.000126132535421437!GO:0008186;RNA-dependent ATPase activity;0.000127143532841335!GO:0006402;mRNA catabolic process;0.000143351003536707!GO:0006310;DNA recombination;0.000157959828386569!GO:0007088;regulation of mitosis;0.00018375882089166!GO:0003924;GTPase activity;0.000193967976665599!GO:0007093;mitotic cell cycle checkpoint;0.000198841625652148!GO:0000059;protein import into nucleus, docking;0.000199409567473192!GO:0016787;hydrolase activity;0.000207257878929601!GO:0005769;early endosome;0.000207425841514206!GO:0016853;isomerase activity;0.000218702525137826!GO:0043681;protein import into mitochondrion;0.000249869058256329!GO:0006839;mitochondrial transport;0.000261099934200263!GO:0005839;proteasome core complex (sensu Eukaryota);0.0002671742424486!GO:0006612;protein targeting to membrane;0.000298491630304354!GO:0005876;spindle microtubule;0.000299595099657352!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000311401489419274!GO:0030120;vesicle coat;0.000320757189722179!GO:0030662;coated vesicle membrane;0.000320757189722179!GO:0032508;DNA duplex unwinding;0.000326548203000231!GO:0032392;DNA geometric change;0.000326548203000231!GO:0031982;vesicle;0.000326604797671539!GO:0006401;RNA catabolic process;0.000327783107430107!GO:0032561;guanyl ribonucleotide binding;0.000334025140900257!GO:0019001;guanyl nucleotide binding;0.000334025140900257!GO:0045892;negative regulation of transcription, DNA-dependent;0.000334593992173739!GO:0006338;chromatin remodeling;0.00035551838122343!GO:0048471;perinuclear region of cytoplasm;0.000381660146601574!GO:0004004;ATP-dependent RNA helicase activity;0.000382353461390642!GO:0006626;protein targeting to mitochondrion;0.000404918061072839!GO:0005798;Golgi-associated vesicle;0.000406912030668195!GO:0006414;translational elongation;0.000412442310963017!GO:0015631;tubulin binding;0.00041885603388336!GO:0000922;spindle pole;0.000460870084343634!GO:0031410;cytoplasmic vesicle;0.000493097642185294!GO:0030867;rough endoplasmic reticulum membrane;0.000494387954072273!GO:0015980;energy derivation by oxidation of organic compounds;0.000548149446569542!GO:0005788;endoplasmic reticulum lumen;0.000576556313886543!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000618526791936931!GO:0000049;tRNA binding;0.000628080857122648!GO:0003702;RNA polymerase II transcription factor activity;0.000628080857122648!GO:0008250;oligosaccharyl transferase complex;0.000638767114352757!GO:0016491;oxidoreductase activity;0.000651124810333238!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000669002921397809!GO:0007010;cytoskeleton organization and biogenesis;0.000679137556996432!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000679815234890728!GO:0031988;membrane-bound vesicle;0.000685420218781644!GO:0030880;RNA polymerase complex;0.000691199960171273!GO:0004576;oligosaccharyl transferase activity;0.000692226026486217!GO:0004298;threonine endopeptidase activity;0.000692226026486217!GO:0000786;nucleosome;0.000713590973266535!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000718591065825375!GO:0019752;carboxylic acid metabolic process;0.000735557007146604!GO:0006405;RNA export from nucleus;0.000759993222370619!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000774012663348692!GO:0048519;negative regulation of biological process;0.000864286928188993!GO:0006268;DNA unwinding during replication;0.000869686962614099!GO:0016023;cytoplasmic membrane-bound vesicle;0.000890942355693346!GO:0000139;Golgi membrane;0.000892648510456699!GO:0019783;small conjugating protein-specific protease activity;0.000920574331249507!GO:0006082;organic acid metabolic process;0.00093214431576752!GO:0048500;signal recognition particle;0.000983201743080954!GO:0005637;nuclear inner membrane;0.000997815193390417!GO:0000792;heterochromatin;0.00102434166113657!GO:0051087;chaperone binding;0.00107803985085701!GO:0051920;peroxiredoxin activity;0.00111182147523071!GO:0008276;protein methyltransferase activity;0.00117976762621548!GO:0005684;U2-dependent spliceosome;0.00118478623719296!GO:0043596;nuclear replication fork;0.00118682823059237!GO:0005048;signal sequence binding;0.00118751353792757!GO:0031072;heat shock protein binding;0.00119356141949016!GO:0046489;phosphoinositide biosynthetic process;0.00123943805396911!GO:0004518;nuclease activity;0.00127899743148607!GO:0006611;protein export from nucleus;0.00128456485624425!GO:0019867;outer membrane;0.00132171310632172!GO:0045454;cell redox homeostasis;0.00138004606476794!GO:0008312;7S RNA binding;0.00145859786811339!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00146291309393909!GO:0000428;DNA-directed RNA polymerase complex;0.00146291309393909!GO:0046474;glycerophospholipid biosynthetic process;0.00149156203292656!GO:0004843;ubiquitin-specific protease activity;0.00151400278143862!GO:0045045;secretory pathway;0.00151577163053794!GO:0033116;ER-Golgi intermediate compartment membrane;0.00153517196419687!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00154262771536796!GO:0042393;histone binding;0.00157268056113281!GO:0031252;leading edge;0.00158637832683075!GO:0005741;mitochondrial outer membrane;0.00159637988443449!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00161035141482441!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00161882504592109!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00177176112634342!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00179005412376018!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00179005412376018!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00179005412376018!GO:0000096;sulfur amino acid metabolic process;0.0018520491195047!GO:0006520;amino acid metabolic process;0.00193183029262663!GO:0031968;organelle outer membrane;0.00193183029262663!GO:0015992;proton transport;0.00193683405472467!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00196805274898429!GO:0046483;heterocycle metabolic process;0.00209411838341418!GO:0008652;amino acid biosynthetic process;0.00211398467613067!GO:0004221;ubiquitin thiolesterase activity;0.00212197823981669!GO:0000082;G1/S transition of mitotic cell cycle;0.0021847962742841!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00219440525104182!GO:0006818;hydrogen transport;0.00225180182819956!GO:0000819;sister chromatid segregation;0.00225795067918533!GO:0051287;NAD binding;0.00231896583762978!GO:0007006;mitochondrial membrane organization and biogenesis;0.00234690045945938!GO:0019899;enzyme binding;0.00236195840095584!GO:0008022;protein C-terminus binding;0.00271840789440857!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00272590712667056!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00288887283791025!GO:0045047;protein targeting to ER;0.00288887283791025!GO:0022890;inorganic cation transmembrane transporter activity;0.00321372693732513!GO:0008408;3'-5' exonuclease activity;0.00327238828495322!GO:0000070;mitotic sister chromatid segregation;0.00333742613367642!GO:0006270;DNA replication initiation;0.0034131127317061!GO:0030118;clathrin coat;0.0034470904302261!GO:0032200;telomere organization and biogenesis;0.00345160764794434!GO:0000723;telomere maintenance;0.00345160764794434!GO:0044454;nuclear chromosome part;0.00348543172349966!GO:0030521;androgen receptor signaling pathway;0.00358158624260699!GO:0004674;protein serine/threonine kinase activity;0.00358158624260699!GO:0031570;DNA integrity checkpoint;0.00360438470482875!GO:0006284;base-excision repair;0.00364788863341341!GO:0042981;regulation of apoptosis;0.00370524663694938!GO:0006275;regulation of DNA replication;0.00370542292139662!GO:0004532;exoribonuclease activity;0.00373773270087111!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00373773270087111!GO:0005885;Arp2/3 protein complex;0.00394115559229365!GO:0000339;RNA cap binding;0.00402336579852268!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00408752787642138!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00408752787642138!GO:0000086;G2/M transition of mitotic cell cycle;0.00429621984148236!GO:0000178;exosome (RNase complex);0.00435368146175993!GO:0003746;translation elongation factor activity;0.00448656747365464!GO:0003711;transcription elongation regulator activity;0.00452002168323124!GO:0008180;signalosome;0.00453700423023843!GO:0006891;intra-Golgi vesicle-mediated transport;0.0046555669570563!GO:0006916;anti-apoptosis;0.00472924855988014!GO:0009451;RNA modification;0.00477295952077652!GO:0043067;regulation of programmed cell death;0.00477994675687409!GO:0043601;nuclear replisome;0.0048980729622757!GO:0030894;replisome;0.0048980729622757!GO:0006400;tRNA modification;0.00491514543162678!GO:0006091;generation of precursor metabolites and energy;0.00492392991035569!GO:0042802;identical protein binding;0.00503434330622625!GO:0043069;negative regulation of programmed cell death;0.00519280936740581!GO:0048487;beta-tubulin binding;0.0052139714530763!GO:0050662;coenzyme binding;0.00521942839702151!GO:0005669;transcription factor TFIID complex;0.00525338978082592!GO:0000725;recombinational repair;0.00525338978082592!GO:0000724;double-strand break repair via homologous recombination;0.00525338978082592!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00542225850329104!GO:0008017;microtubule binding;0.00558181045099033!GO:0009165;nucleotide biosynthetic process;0.0056699265323337!GO:0005791;rough endoplasmic reticulum;0.00572050313828246!GO:0051252;regulation of RNA metabolic process;0.00575765155452165!GO:0043624;cellular protein complex disassembly;0.00588459736190229!GO:0043066;negative regulation of apoptosis;0.00602289825813038!GO:0018196;peptidyl-asparagine modification;0.00620740320637808!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00620740320637808!GO:0016272;prefoldin complex;0.00675759916127108!GO:0008139;nuclear localization sequence binding;0.00676652178872542!GO:0006289;nucleotide-excision repair;0.00682075655179596!GO:0000790;nuclear chromatin;0.00691921334110159!GO:0031124;mRNA 3'-end processing;0.00692413996293565!GO:0030384;phosphoinositide metabolic process;0.00692413996293565!GO:0004003;ATP-dependent DNA helicase activity;0.0069437829040205!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0069437829040205!GO:0015002;heme-copper terminal oxidase activity;0.0069437829040205!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0069437829040205!GO:0004129;cytochrome-c oxidase activity;0.0069437829040205!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00709019594669994!GO:0015399;primary active transmembrane transporter activity;0.00709019594669994!GO:0007569;cell aging;0.00733226156536201!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00743991282852459!GO:0045941;positive regulation of transcription;0.00800165798304284!GO:0045893;positive regulation of transcription, DNA-dependent;0.00815230907538272!GO:0005832;chaperonin-containing T-complex;0.00817921946845515!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00835536861899453!GO:0006376;mRNA splice site selection;0.00835536861899453!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00835536861899453!GO:0042770;DNA damage response, signal transduction;0.00866731598566145!GO:0016584;nucleosome positioning;0.00880266115548554!GO:0046467;membrane lipid biosynthetic process;0.00891728018265311!GO:0051540;metal cluster binding;0.00911569256387773!GO:0051536;iron-sulfur cluster binding;0.00911569256387773!GO:0043022;ribosome binding;0.00918054642792733!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00922819252075698!GO:0030518;steroid hormone receptor signaling pathway;0.00922819252075698!GO:0005869;dynactin complex;0.00929445050706862!GO:0009116;nucleoside metabolic process;0.0093697324312285!GO:0006505;GPI anchor metabolic process;0.00992868796648626!GO:0065009;regulation of a molecular function;0.00997120112675977!GO:0031970;organelle envelope lumen;0.00997120112675977!GO:0006607;NLS-bearing substrate import into nucleus;0.0102852365994731!GO:0006144;purine base metabolic process;0.0102888772953639!GO:0032984;macromolecular complex disassembly;0.010801174269763!GO:0009112;nucleobase metabolic process;0.0108467897359079!GO:0033673;negative regulation of kinase activity;0.0111868195816724!GO:0006469;negative regulation of protein kinase activity;0.0111868195816724!GO:0006506;GPI anchor biosynthetic process;0.0113280146545588!GO:0051656;establishment of organelle localization;0.011378876634266!GO:0051053;negative regulation of DNA metabolic process;0.0115113709276932!GO:0000118;histone deacetylase complex;0.0115598145455318!GO:0048037;cofactor binding;0.0120849300813807!GO:0016790;thiolester hydrolase activity;0.012310367075571!GO:0009081;branched chain family amino acid metabolic process;0.0125007541421422!GO:0006378;mRNA polyadenylation;0.0126535364306388!GO:0035258;steroid hormone receptor binding;0.0127300572723068!GO:0031577;spindle checkpoint;0.0132607476329383!GO:0009303;rRNA transcription;0.0133302041828749!GO:0030663;COPI coated vesicle membrane;0.0136639476842635!GO:0030126;COPI vesicle coat;0.0136639476842635!GO:0030027;lamellipodium;0.0137347217290014!GO:0006541;glutamine metabolic process;0.013771645940904!GO:0051348;negative regulation of transferase activity;0.0138561256572178!GO:0000077;DNA damage checkpoint;0.0138691905697769!GO:0005663;DNA replication factor C complex;0.0139386857801914!GO:0006892;post-Golgi vesicle-mediated transport;0.0142571106402707!GO:0046966;thyroid hormone receptor binding;0.0142571106402707!GO:0006595;polyamine metabolic process;0.0143605009578314!GO:0006497;protein amino acid lipidation;0.0148817785482852!GO:0000152;nuclear ubiquitin ligase complex;0.0150165699763744!GO:0030119;AP-type membrane coat adaptor complex;0.015428041307687!GO:0000097;sulfur amino acid biosynthetic process;0.0155162977607044!GO:0005905;coated pit;0.0157802942610511!GO:0007004;telomere maintenance via telomerase;0.0158298160423664!GO:0035267;NuA4 histone acetyltransferase complex;0.0158298160423664!GO:0006984;ER-nuclear signaling pathway;0.0159223078639542!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0160072511461796!GO:0032259;methylation;0.016154424027552!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0164137749083206!GO:0031123;RNA 3'-end processing;0.0164567391098986!GO:0016126;sterol biosynthetic process;0.0164913192365763!GO:0006730;one-carbon compound metabolic process;0.0166668175278613!GO:0005758;mitochondrial intermembrane space;0.0167903176623717!GO:0043241;protein complex disassembly;0.0169310852221116!GO:0008287;protein serine/threonine phosphatase complex;0.0170476880758381!GO:0000175;3'-5'-exoribonuclease activity;0.0170647131160089!GO:0042054;histone methyltransferase activity;0.0170755288276643!GO:0006650;glycerophospholipid metabolic process;0.0170822579076588!GO:0022411;cellular component disassembly;0.0171467043297407!GO:0016279;protein-lysine N-methyltransferase activity;0.0171467043297407!GO:0018024;histone-lysine N-methyltransferase activity;0.0171467043297407!GO:0016278;lysine N-methyltransferase activity;0.0171467043297407!GO:0044450;microtubule organizing center part;0.0174908672667463!GO:0000726;non-recombinational repair;0.0177065649762825!GO:0051789;response to protein stimulus;0.0177065649762825!GO:0006986;response to unfolded protein;0.0177065649762825!GO:0006301;postreplication repair;0.0182305097258812!GO:0031902;late endosome membrane;0.0183660094023215!GO:0019843;rRNA binding;0.0185107702704235!GO:0051539;4 iron, 4 sulfur cluster binding;0.0192344796037686!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0195576503310699!GO:0030131;clathrin adaptor complex;0.0204097176859832!GO:0007050;cell cycle arrest;0.020640781177501!GO:0000209;protein polyubiquitination;0.0212223316748023!GO:0016407;acetyltransferase activity;0.0212821425510453!GO:0050811;GABA receptor binding;0.022012241027178!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0220719035182891!GO:0000781;chromosome, telomeric region;0.0222637009840591!GO:0045947;negative regulation of translational initiation;0.0223294738082029!GO:0000123;histone acetyltransferase complex;0.0223714545855259!GO:0008097;5S rRNA binding;0.0223729988063962!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0227002973276266!GO:0001824;blastocyst development;0.0227002973276266!GO:0000793;condensed chromosome;0.0246253312992325!GO:0046982;protein heterodimerization activity;0.0247550093618622!GO:0009070;serine family amino acid biosynthetic process;0.024813063214862!GO:0046128;purine ribonucleoside metabolic process;0.0252179371268298!GO:0042278;purine nucleoside metabolic process;0.0252179371268298!GO:0016579;protein deubiquitination;0.0255516909385159!GO:0008610;lipid biosynthetic process;0.0256464950465486!GO:0043488;regulation of mRNA stability;0.0258052450579491!GO:0043487;regulation of RNA stability;0.0258052450579491!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.025952067245983!GO:0043414;biopolymer methylation;0.025952067245983!GO:0047485;protein N-terminus binding;0.025952067245983!GO:0005875;microtubule associated complex;0.0262212032053132!GO:0008143;poly(A) binding;0.0262614860059042!GO:0043189;H4/H2A histone acetyltransferase complex;0.0265663159696791!GO:0003725;double-stranded RNA binding;0.026681521478839!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0266822913475448!GO:0017134;fibroblast growth factor binding;0.0298080377809389!GO:0016615;malate dehydrogenase activity;0.0298551225914523!GO:0045815;positive regulation of gene expression, epigenetic;0.0298690845239305!GO:0051338;regulation of transferase activity;0.0298690845239305!GO:0051640;organelle localization;0.0301300041687772!GO:0006564;L-serine biosynthetic process;0.0304185802499434!GO:0005844;polysome;0.0313026420463923!GO:0031901;early endosome membrane;0.0316116656005506!GO:0007021;tubulin folding;0.0318776293533394!GO:0030137;COPI-coated vesicle;0.0319320209641551!GO:0065007;biological regulation;0.0323610924443466!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0328381402067915!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0328389485657254!GO:0008234;cysteine-type peptidase activity;0.0328397077621441!GO:0040029;regulation of gene expression, epigenetic;0.0333455166895394!GO:0031406;carboxylic acid binding;0.0353381118879088!GO:0006406;mRNA export from nucleus;0.0356350811454036!GO:0042158;lipoprotein biosynthetic process;0.0356350811454036!GO:0000805;X chromosome;0.0360299256700904!GO:0001740;Barr body;0.0360299256700904!GO:0008536;Ran GTPase binding;0.0360299256700904!GO:0006695;cholesterol biosynthetic process;0.0362674071441226!GO:0004239;methionyl aminopeptidase activity;0.036470783467426!GO:0030133;transport vesicle;0.0364792999222276!GO:0005720;nuclear heterochromatin;0.0365110586221199!GO:0042791;5S class rRNA transcription;0.036686362184595!GO:0000127;transcription factor TFIIIC complex;0.036686362184595!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.036686362184595!GO:0006519;amino acid and derivative metabolic process;0.0368260488341025!GO:0006509;membrane protein ectodomain proteolysis;0.0368260488341025!GO:0033619;membrane protein proteolysis;0.0368260488341025!GO:0005784;translocon complex;0.0385421986988343!GO:0043130;ubiquitin binding;0.0386986846491349!GO:0032182;small conjugating protein binding;0.0386986846491349!GO:0043433;negative regulation of transcription factor activity;0.0396710403979186!GO:0006278;RNA-dependent DNA replication;0.0397259535967491!GO:0016569;covalent chromatin modification;0.040030120413405!GO:0042026;protein refolding;0.040030120413405!GO:0046112;nucleobase biosynthetic process;0.0402484446990084!GO:0000910;cytokinesis;0.040288473239811!GO:0043492;ATPase activity, coupled to movement of substances;0.0403606534085028!GO:0016197;endosome transport;0.0404504350459824!GO:0008156;negative regulation of DNA replication;0.0407386641879326!GO:0000287;magnesium ion binding;0.0409669473523732!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0412765344385878!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0414546114145556!GO:0009113;purine base biosynthetic process;0.0419804565624859!GO:0033170;DNA-protein loading ATPase activity;0.0423258220788994!GO:0003689;DNA clamp loader activity;0.0423258220788994!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0424988062981491!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0425162607949519!GO:0006672;ceramide metabolic process;0.0425309559201662!GO:0043631;RNA polyadenylation;0.0430081416899807!GO:0031625;ubiquitin protein ligase binding;0.0443622141974529!GO:0046983;protein dimerization activity;0.0443915824211181!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0443915824211181!GO:0030522;intracellular receptor-mediated signaling pathway;0.0447173883584923!GO:0008632;apoptotic program;0.0447886763395471!GO:0043549;regulation of kinase activity;0.0453975720665679!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0455049203326881!GO:0008320;protein transmembrane transporter activity;0.0466628471269926!GO:0009083;branched chain family amino acid catabolic process;0.0467473761210504!GO:0030176;integral to endoplasmic reticulum membrane;0.0477987441268984!GO:0005652;nuclear lamina;0.0480647229490571!GO:0009066;aspartate family amino acid metabolic process;0.0481317327004607!GO:0006379;mRNA cleavage;0.0482622401018033!GO:0004523;ribonuclease H activity;0.0484788466895164!GO:0031371;ubiquitin conjugating enzyme complex;0.0486625726822337!GO:0046426;negative regulation of JAK-STAT cascade;0.0487430580401984!GO:0022406;membrane docking;0.0487430580401984!GO:0048278;vesicle docking;0.0487430580401984!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0491702766716028!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0491702766716028 | |||
|sample_id=10541 | |sample_id=10541 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 102: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=LEF1_TCF7_TCF7L1,2:4.66427661633;PAX8:3.33243313775;CDC5L:2.45380630019;NANOG:2.25029507131;T:2.22418653782;SOX2:2.08266189259;NKX2-3_NKX2-5:1.95943149579;ZEB1:1.90362310637;LMO2:1.89178409217;CRX:1.88658049614;AIRE:1.8757317637;FOXN1:1.82325484083;SNAI1..3:1.78357236772;PDX1:1.75288606343;ELK1,4_GABP{A,B1}:1.64344181429;ADNP_IRX_SIX_ZHX:1.6130422933;PRRX1,2:1.61172819739;ATF4:1.5894843991;E2F1..5:1.58880714915;TFDP1:1.5699664986;YY1:1.54462338402;NFY{A,B,C}:1.51441777264;SOX{8,9,10}:1.46724720301;GFI1:1.45646977459;EN1,2:1.44510915487;SOX17:1.42984525273;NKX3-2:1.41107751442;AHR_ARNT_ARNT2:1.40501444425;FOXQ1:1.38118705106;BREu{core}:1.36974323264;FOX{I1,J2}:1.36068493002;OCT4_SOX2{dimer}:1.21885454585;MYOD1:1.15780170785;FOXP1:1.14365834721;RORA:1.12325159116;HOX{A6,A7,B6,B7}:1.12126104866;POU5F1:0.988418733973;LHX3,4:0.95736951592;ZFP161:0.930132388167;MYB:0.910856192553;POU6F1:0.900767568505;PITX1..3:0.878142562715;PBX1:0.858603731067;FOX{F1,F2,J1}:0.856124220799;TBX4,5:0.83120343712;ZNF143:0.818624175614;ALX1:0.804105054931;EVI1:0.671932868984;FOXO1,3,4:0.670190785265;PAX4:0.665394267543;MED-1{core}:0.646322211113;NR6A1:0.635811405498;VSX1,2:0.632940979914;NRF1:0.628190665527;NKX2-1,4:0.600176211341;bHLH_family:0.589941127321;CUX2:0.577413234348;POU1F1:0.56771511382;ATF2:0.558251468944;RFX2..5_RFXANK_RFXAP:0.50515975471;FOXA2:0.473788007754;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.463730514445;BPTF:0.429489714254;IKZF1:0.376816977572;HBP1_HMGB_SSRP1_UBTF:0.375288546601;HAND1,2:0.372841404971;ZBTB16:0.346216576246;NR5A1,2:0.344229619129;GZF1:0.299955535776;CEBPA,B_DDIT3:0.260008351453;ZNF384:0.259469501501;FOXL1:0.249535805944;TOPORS:0.23582837818;HLF:0.220586697349;TFAP2{A,C}:0.205353174295;HIF1A:0.181555955085;NKX6-1,2:0.177876869875;XBP1:0.173556361139;MTE{core}:0.172394234572;ONECUT1,2:0.123687512393;DMAP1_NCOR{1,2}_SMARC:0.11623315085;FOXM1:0.11279391944;GFI1B:0.101999202322;RBPJ:0.0935424123529;TEF:0.0904259571618;PAX3,7:0.0877894537607;NFE2L2:0.0871347235122;HIC1:0.0864881777816;HNF1A:0.0798792003377;FOX{D1,D2}:0.0704816528233;TP53:0.0439021341507;ELF1,2,4:0.0376921235527;POU2F1..3:0.0307393199953;TFAP2B:0.0232483083805;IKZF2:0.0126868312706;FOXP3:0.0121181943531;DBP:0.0111580314284;PAX6:0.00984769038138;STAT5{A,B}:-0.00201607031705;STAT1,3:-0.0175128954422;CDX1,2,4:-0.0294395507999;ATF5_CREB3:-0.0366054265018;TLX2:-0.0686478820082;TGIF1:-0.0798841923768;AR:-0.0925072926936;MZF1:-0.0975168722558;CREB1:-0.108165228942;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.119181986058;HOX{A4,D4}:-0.121200251931;NFE2:-0.12757111416;SREBF1,2:-0.144638340304;MYFfamily:-0.160013527993;ARID5B:-0.178402900661;MEF2{A,B,C,D}:-0.19222384445;NANOG{mouse}:-0.199778422816;GATA4:-0.215683651235;PAX2:-0.22553882229;PATZ1:-0.226162663997;GTF2I:-0.229577358627;POU3F1..4:-0.231764722501;TBP:-0.252298623301;HNF4A_NR2F1,2:-0.254563634228;SOX5:-0.262253976162;GTF2A1,2:-0.267974502708;FOXD3:-0.279184523842;MYBL2:-0.303583696248;SPIB:-0.322665494847;FOS_FOS{B,L1}_JUN{B,D}:-0.328118247702;HOX{A5,B5}:-0.352580946256;PAX1,9:-0.359275599369;GATA6:-0.360851903671;NKX2-2,8:-0.370525371461;EGR1..3:-0.384167545984;XCPE1{core}:-0.399370457191;FOSL2:-0.410612998341;RFX1:-0.415651083829;TEAD1:-0.42435476439;MAZ:-0.436588272599;KLF4:-0.454870533073;HSF1,2:-0.465459267337;RUNX1..3:-0.475488071101;HOXA9_MEIS1:-0.481220202667;RREB1:-0.514847863007;SPI1:-0.517285626219;NHLH1,2:-0.535945887488;NFIX:-0.558110509207;BACH2:-0.597097998284;PAX5:-0.654648337109;JUN:-0.668028909266;NFKB1_REL_RELA:-0.672629507298;UFEwm:-0.673717671629;ZNF148:-0.691187996429;SP1:-0.71677984918;TAL1_TCF{3,4,12}:-0.728907900005;NKX3-1:-0.744414305564;NFIL3:-0.748000285594;TLX1..3_NFIC{dimer}:-0.779218891504;REST:-0.797748007798;IRF7:-0.821997055186;NR3C1:-0.878652546751;GCM1,2:-0.882064139865;ETS1,2:-0.905597145507;ALX4:-0.936029694293;ESR1:-0.948466641506;RXR{A,B,G}:-0.977224908277;ZBTB6:-1.01158415901;ATF6:-1.02407459299;NR1H4:-1.03812549973;IRF1,2:-1.05713199568;TFCP2:-1.06250631599;ZNF238:-1.06315828168;MTF1:-1.06513903672;PRDM1:-1.12562063625;GLI1..3:-1.12591957362;EBF1:-1.1424169573;HES1:-1.15861480564;ZIC1..3:-1.18267051178;NFE2L1:-1.18352148398;NFATC1..3:-1.28028281647;HMX1:-1.28221483421;HMGA1,2:-1.29349231848;MAFB:-1.29848769418;SMAD1..7,9:-1.30987526971;ZNF423:-1.34048338332;TFAP4:-1.44183687708;EP300:-1.63431459043;ESRRA:-1.75344262353;STAT2,4,6:-1.7767106837;SPZ1:-1.91858372648;SRF:-2.0148148204;PPARG:-2.07160648639;RXRA_VDR{dimer}:-3.03765170847 | |top_motifs=LEF1_TCF7_TCF7L1,2:4.66427661633;PAX8:3.33243313775;CDC5L:2.45380630019;NANOG:2.25029507131;T:2.22418653782;SOX2:2.08266189259;NKX2-3_NKX2-5:1.95943149579;ZEB1:1.90362310637;LMO2:1.89178409217;CRX:1.88658049614;AIRE:1.8757317637;FOXN1:1.82325484083;SNAI1..3:1.78357236772;PDX1:1.75288606343;ELK1,4_GABP{A,B1}:1.64344181429;ADNP_IRX_SIX_ZHX:1.6130422933;PRRX1,2:1.61172819739;ATF4:1.5894843991;E2F1..5:1.58880714915;TFDP1:1.5699664986;YY1:1.54462338402;NFY{A,B,C}:1.51441777264;SOX{8,9,10}:1.46724720301;GFI1:1.45646977459;EN1,2:1.44510915487;SOX17:1.42984525273;NKX3-2:1.41107751442;AHR_ARNT_ARNT2:1.40501444425;FOXQ1:1.38118705106;BREu{core}:1.36974323264;FOX{I1,J2}:1.36068493002;OCT4_SOX2{dimer}:1.21885454585;MYOD1:1.15780170785;FOXP1:1.14365834721;RORA:1.12325159116;HOX{A6,A7,B6,B7}:1.12126104866;POU5F1:0.988418733973;LHX3,4:0.95736951592;ZFP161:0.930132388167;MYB:0.910856192553;POU6F1:0.900767568505;PITX1..3:0.878142562715;PBX1:0.858603731067;FOX{F1,F2,J1}:0.856124220799;TBX4,5:0.83120343712;ZNF143:0.818624175614;ALX1:0.804105054931;EVI1:0.671932868984;FOXO1,3,4:0.670190785265;PAX4:0.665394267543;MED-1{core}:0.646322211113;NR6A1:0.635811405498;VSX1,2:0.632940979914;NRF1:0.628190665527;NKX2-1,4:0.600176211341;bHLH_family:0.589941127321;CUX2:0.577413234348;POU1F1:0.56771511382;ATF2:0.558251468944;RFX2..5_RFXANK_RFXAP:0.50515975471;FOXA2:0.473788007754;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.463730514445;BPTF:0.429489714254;IKZF1:0.376816977572;HBP1_HMGB_SSRP1_UBTF:0.375288546601;HAND1,2:0.372841404971;ZBTB16:0.346216576246;NR5A1,2:0.344229619129;GZF1:0.299955535776;CEBPA,B_DDIT3:0.260008351453;ZNF384:0.259469501501;FOXL1:0.249535805944;TOPORS:0.23582837818;HLF:0.220586697349;TFAP2{A,C}:0.205353174295;HIF1A:0.181555955085;NKX6-1,2:0.177876869875;XBP1:0.173556361139;MTE{core}:0.172394234572;ONECUT1,2:0.123687512393;DMAP1_NCOR{1,2}_SMARC:0.11623315085;FOXM1:0.11279391944;GFI1B:0.101999202322;RBPJ:0.0935424123529;TEF:0.0904259571618;PAX3,7:0.0877894537607;NFE2L2:0.0871347235122;HIC1:0.0864881777816;HNF1A:0.0798792003377;FOX{D1,D2}:0.0704816528233;TP53:0.0439021341507;ELF1,2,4:0.0376921235527;POU2F1..3:0.0307393199953;TFAP2B:0.0232483083805;IKZF2:0.0126868312706;FOXP3:0.0121181943531;DBP:0.0111580314284;PAX6:0.00984769038138;STAT5{A,B}:-0.00201607031705;STAT1,3:-0.0175128954422;CDX1,2,4:-0.0294395507999;ATF5_CREB3:-0.0366054265018;TLX2:-0.0686478820082;TGIF1:-0.0798841923768;AR:-0.0925072926936;MZF1:-0.0975168722558;CREB1:-0.108165228942;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.119181986058;HOX{A4,D4}:-0.121200251931;NFE2:-0.12757111416;SREBF1,2:-0.144638340304;MYFfamily:-0.160013527993;ARID5B:-0.178402900661;MEF2{A,B,C,D}:-0.19222384445;NANOG{mouse}:-0.199778422816;GATA4:-0.215683651235;PAX2:-0.22553882229;PATZ1:-0.226162663997;GTF2I:-0.229577358627;POU3F1..4:-0.231764722501;TBP:-0.252298623301;HNF4A_NR2F1,2:-0.254563634228;SOX5:-0.262253976162;GTF2A1,2:-0.267974502708;FOXD3:-0.279184523842;MYBL2:-0.303583696248;SPIB:-0.322665494847;FOS_FOS{B,L1}_JUN{B,D}:-0.328118247702;HOX{A5,B5}:-0.352580946256;PAX1,9:-0.359275599369;GATA6:-0.360851903671;NKX2-2,8:-0.370525371461;EGR1..3:-0.384167545984;XCPE1{core}:-0.399370457191;FOSL2:-0.410612998341;RFX1:-0.415651083829;TEAD1:-0.42435476439;MAZ:-0.436588272599;KLF4:-0.454870533073;HSF1,2:-0.465459267337;RUNX1..3:-0.475488071101;HOXA9_MEIS1:-0.481220202667;RREB1:-0.514847863007;SPI1:-0.517285626219;NHLH1,2:-0.535945887488;NFIX:-0.558110509207;BACH2:-0.597097998284;PAX5:-0.654648337109;JUN:-0.668028909266;NFKB1_REL_RELA:-0.672629507298;UFEwm:-0.673717671629;ZNF148:-0.691187996429;SP1:-0.71677984918;TAL1_TCF{3,4,12}:-0.728907900005;NKX3-1:-0.744414305564;NFIL3:-0.748000285594;TLX1..3_NFIC{dimer}:-0.779218891504;REST:-0.797748007798;IRF7:-0.821997055186;NR3C1:-0.878652546751;GCM1,2:-0.882064139865;ETS1,2:-0.905597145507;ALX4:-0.936029694293;ESR1:-0.948466641506;RXR{A,B,G}:-0.977224908277;ZBTB6:-1.01158415901;ATF6:-1.02407459299;NR1H4:-1.03812549973;IRF1,2:-1.05713199568;TFCP2:-1.06250631599;ZNF238:-1.06315828168;MTF1:-1.06513903672;PRDM1:-1.12562063625;GLI1..3:-1.12591957362;EBF1:-1.1424169573;HES1:-1.15861480564;ZIC1..3:-1.18267051178;NFE2L1:-1.18352148398;NFATC1..3:-1.28028281647;HMX1:-1.28221483421;HMGA1,2:-1.29349231848;MAFB:-1.29848769418;SMAD1..7,9:-1.30987526971;ZNF423:-1.34048338332;TFAP4:-1.44183687708;EP300:-1.63431459043;ESRRA:-1.75344262353;STAT2,4,6:-1.7767106837;SPZ1:-1.91858372648;SRF:-2.0148148204;PPARG:-2.07160648639;RXRA_VDR{dimer}:-3.03765170847 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10541-107H1;search_select_hide=table117:FF:10541-107H1 | |||
}} | }} | ||
Latest revision as of 14:28, 3 June 2020
| Name: | small cell lung carcinoma cell line:LK-2 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11285 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11285
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11285
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.151 |
| 10 | 10 | 0.381 |
| 100 | 100 | 0.865 |
| 101 | 101 | 0.925 |
| 102 | 102 | 0.756 |
| 103 | 103 | 0.0753 |
| 104 | 104 | 0.582 |
| 105 | 105 | 0.974 |
| 106 | 106 | 0.0371 |
| 107 | 107 | 0.364 |
| 108 | 108 | 0.996 |
| 109 | 109 | 0.0879 |
| 11 | 11 | 0.0504 |
| 110 | 110 | 0.465 |
| 111 | 111 | 0.107 |
| 112 | 112 | 0.02 |
| 113 | 113 | 0.308 |
| 114 | 114 | 0.0235 |
| 115 | 115 | 0.636 |
| 116 | 116 | 0.621 |
| 117 | 117 | 0.443 |
| 118 | 118 | 0.217 |
| 119 | 119 | 0.0917 |
| 12 | 12 | 0.581 |
| 120 | 120 | 0.933 |
| 121 | 121 | 0.205 |
| 122 | 122 | 0.61 |
| 123 | 123 | 0.592 |
| 124 | 124 | 0.814 |
| 125 | 125 | 0.288 |
| 126 | 126 | 0.196 |
| 127 | 127 | 0.0615 |
| 128 | 128 | 0.094 |
| 129 | 129 | 0.607 |
| 13 | 13 | 0.779 |
| 130 | 130 | 0.352 |
| 131 | 131 | 0.97 |
| 132 | 132 | 0.871 |
| 133 | 133 | 0.29 |
| 134 | 134 | 0.831 |
| 135 | 135 | 0.187 |
| 136 | 136 | 0.132 |
| 137 | 137 | 0.261 |
| 138 | 138 | 0.213 |
| 139 | 139 | 0.0807 |
| 14 | 14 | 0.714 |
| 140 | 140 | 0.87 |
| 141 | 141 | 0.233 |
| 142 | 142 | 0.664 |
| 143 | 143 | 0.041 |
| 144 | 144 | 0.194 |
| 145 | 145 | 0.184 |
| 146 | 146 | 0.939 |
| 147 | 147 | 0.571 |
| 148 | 148 | 0.468 |
| 149 | 149 | 0.0129 |
| 15 | 15 | 0.412 |
| 150 | 150 | 0.484 |
| 151 | 151 | 0.197 |
| 152 | 152 | 0.122 |
| 153 | 153 | 0.845 |
| 154 | 154 | 0.692 |
| 155 | 155 | 0.756 |
| 156 | 156 | 0.717 |
| 157 | 157 | 0.363 |
| 158 | 158 | 0.702 |
| 159 | 159 | 0.562 |
| 16 | 16 | 0.218 |
| 160 | 160 | 0.401 |
| 161 | 161 | 0.717 |
| 162 | 162 | 0.86 |
| 163 | 163 | 0.722 |
| 164 | 164 | 0.936 |
| 165 | 165 | 0.72 |
| 166 | 166 | 0.981 |
| 167 | 167 | 0.414 |
| 168 | 168 | 0.256 |
| 169 | 169 | 0.0106 |
| 17 | 17 | 0.276 |
| 18 | 18 | 0.427 |
| 19 | 19 | 0.0516 |
| 2 | 2 | 0.338 |
| 20 | 20 | 0.598 |
| 21 | 21 | 0.377 |
| 22 | 22 | 0.0542 |
| 23 | 23 | 0.0123 |
| 24 | 24 | 0.392 |
| 25 | 25 | 0.632 |
| 26 | 26 | 0.598 |
| 27 | 27 | 0.124 |
| 28 | 28 | 0.965 |
| 29 | 29 | 0.968 |
| 3 | 3 | 0.149 |
| 30 | 30 | 0.364 |
| 31 | 31 | 0.365 |
| 32 | 32 | 0.00345 |
| 33 | 33 | 0.75 |
| 34 | 34 | 0.181 |
| 35 | 35 | 0.638 |
| 36 | 36 | 0.916 |
| 37 | 37 | 0.211 |
| 38 | 38 | 0.389 |
| 39 | 39 | 0.622 |
| 4 | 4 | 0.896 |
| 40 | 40 | 0.262 |
| 41 | 41 | 0.0702 |
| 42 | 42 | 0.503 |
| 43 | 43 | 0.0578 |
| 44 | 44 | 0.253 |
| 45 | 45 | 0.403 |
| 46 | 46 | 0.197 |
| 47 | 47 | 0.436 |
| 48 | 48 | 0.349 |
| 49 | 49 | 0.182 |
| 5 | 5 | 0.319 |
| 50 | 50 | 0.706 |
| 51 | 51 | 0.295 |
| 52 | 52 | 0.495 |
| 53 | 53 | 0.482 |
| 54 | 54 | 0.0924 |
| 55 | 55 | 0.254 |
| 56 | 56 | 0.535 |
| 57 | 57 | 0.91 |
| 58 | 58 | 0.477 |
| 59 | 59 | 0.0195 |
| 6 | 6 | 0.362 |
| 60 | 60 | 0.0982 |
| 61 | 61 | 0.909 |
| 62 | 62 | 0.164 |
| 63 | 63 | 0.23 |
| 64 | 64 | 0.633 |
| 65 | 65 | 0.0633 |
| 66 | 66 | 0.385 |
| 67 | 67 | 0.531 |
| 68 | 68 | 0.211 |
| 69 | 69 | 0.401 |
| 7 | 7 | 0.755 |
| 70 | 70 | 0.0889 |
| 71 | 71 | 0.136 |
| 72 | 72 | 0.37 |
| 73 | 73 | 0.0877 |
| 74 | 74 | 0.924 |
| 75 | 75 | 0.683 |
| 76 | 76 | 0.863 |
| 77 | 77 | 0.101 |
| 78 | 78 | 0.823 |
| 79 | 79 | 0.054 |
| 8 | 8 | 0.285 |
| 80 | 80 | 0.282 |
| 81 | 81 | 0.559 |
| 82 | 82 | 0.00139 |
| 83 | 83 | 0.797 |
| 84 | 84 | 0.636 |
| 85 | 85 | 0.00309 |
| 86 | 86 | 0.692 |
| 87 | 87 | 0.962 |
| 88 | 88 | 0.948 |
| 89 | 89 | 0.0633 |
| 9 | 9 | 0.129 |
| 90 | 90 | 0.673 |
| 91 | 91 | 0.337 |
| 92 | 92 | 0.0241 |
| 93 | 93 | 0.848 |
| 94 | 94 | 0.144 |
| 95 | 95 | 0.349 |
| 96 | 96 | 0.444 |
| 97 | 97 | 0.81 |
| 98 | 98 | 0.314 |
| 99 | 99 | 0.6 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11285
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100189 small cell lung cancer cell sample
FF:0102206 small cell lung cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
5409 (lung small cell carcinoma)
3904 (bronchogenic carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102206 (small cell lung cancer cell line sample)
0100189 (small cell lung cancer cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
