FF:10076-102A4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004850 | ||
|accession_numbers=CAGE;DRX008692;DRR009564;DRZ000989;DRZ002374;DRZ012339;DRZ013724 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010076 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520adult%252c%2520donor1.CNhs11787.10076-102A4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520adult%252c%2520donor1.CNhs11787.10076-102A4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520adult%252c%2520donor1.CNhs11787.10076-102A4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520adult%252c%2520donor1.CNhs11787.10076-102A4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520adult%252c%2520donor1.CNhs11787.10076-102A4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10076-102A4 | |id=FF:10076-102A4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010076 | ||
|is_obsolete= | |||
|library_id=CNhs11787 | |||
|library_id_phase_based=2:CNhs11787 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10076 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10076 | |||
|name=occipital lobe, adult, donor1 | |name=occipital lobe, adult, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11787,LSID820,release009,COMPLETED | |profile_hcage=CNhs11787,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number=Cat:RtpHAN: Brain | |rna_catalog_number=Cat:RtpHAN: Brain | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.34416772869082e-288!GO:0005737;cytoplasm;1.97999761678666e-160!GO:0044444;cytoplasmic part;9.06985236018169e-111!GO:0043226;organelle;3.16377588189858e-93!GO:0043229;intracellular organelle;9.72428063602089e-93!GO:0043227;membrane-bound organelle;1.77419800554842e-87!GO:0043231;intracellular membrane-bound organelle;2.30430277999414e-87!GO:0044422;organelle part;8.58134240426779e-69!GO:0044446;intracellular organelle part;6.45451251369782e-68!GO:0032991;macromolecular complex;4.76370109169142e-63!GO:0005515;protein binding;3.25848588340828e-58!GO:0005739;mitochondrion;1.16907802802022e-49!GO:0030529;ribonucleoprotein complex;5.53765904324819e-45!GO:0016043;cellular component organization and biogenesis;8.18047830873998e-44!GO:0031090;organelle membrane;3.27303349314644e-42!GO:0015031;protein transport;4.76757230717112e-38!GO:0044429;mitochondrial part;1.04561029127759e-37!GO:0033036;macromolecule localization;1.48187235338709e-37!GO:0003723;RNA binding;1.81577509653945e-37!GO:0043234;protein complex;4.54865969154086e-35!GO:0008104;protein localization;6.57283822310829e-35!GO:0045184;establishment of protein localization;6.55357842746537e-34!GO:0046907;intracellular transport;2.70884431397796e-30!GO:0043233;organelle lumen;4.1347248792322e-30!GO:0031974;membrane-enclosed lumen;4.1347248792322e-30!GO:0031975;envelope;1.39866979969785e-29!GO:0031967;organelle envelope;1.84001111857119e-29!GO:0005840;ribosome;1.47092261221289e-28!GO:0051649;establishment of cellular localization;3.26161145223597e-28!GO:0051641;cellular localization;4.82313459010731e-28!GO:0019538;protein metabolic process;4.28278440362238e-26!GO:0044428;nuclear part;5.04250398207093e-26!GO:0005829;cytosol;1.56354895522288e-25!GO:0005740;mitochondrial envelope;2.21112697581195e-25!GO:0016192;vesicle-mediated transport;3.60850716202347e-25!GO:0031966;mitochondrial membrane;5.86148000782944e-25!GO:0044238;primary metabolic process;4.53837530726903e-24!GO:0003735;structural constituent of ribosome;5.01611364241721e-24!GO:0006119;oxidative phosphorylation;6.19234525397261e-24!GO:0044260;cellular macromolecule metabolic process;4.38203216897547e-23!GO:0044237;cellular metabolic process;4.54680132172973e-23!GO:0044267;cellular protein metabolic process;1.69749804232321e-22!GO:0006886;intracellular protein transport;1.99985980472718e-22!GO:0019866;organelle inner membrane;2.1403446903026e-22!GO:0005743;mitochondrial inner membrane;1.07606612164082e-21!GO:0016071;mRNA metabolic process;1.07606612164082e-21!GO:0006412;translation;2.97898523370462e-21!GO:0043170;macromolecule metabolic process;3.29493674993771e-21!GO:0008380;RNA splicing;1.1415709713585e-20!GO:0006396;RNA processing;1.43842269146553e-20!GO:0033279;ribosomal subunit;2.15297455939351e-20!GO:0005794;Golgi apparatus;2.51667350177543e-20!GO:0009058;biosynthetic process;8.3985548710875e-20!GO:0006996;organelle organization and biogenesis;4.53399204802566e-19!GO:0031982;vesicle;5.03017770645146e-19!GO:0044455;mitochondrial membrane part;6.3606650282379e-19!GO:0031410;cytoplasmic vesicle;2.08953134986371e-18!GO:0006397;mRNA processing;6.2076558293365e-18!GO:0031988;membrane-bound vesicle;6.24107969462615e-18!GO:0005746;mitochondrial respiratory chain;1.15437696712179e-17!GO:0065003;macromolecular complex assembly;1.66394909788142e-17!GO:0016023;cytoplasmic membrane-bound vesicle;2.59787605451524e-17!GO:0009059;macromolecule biosynthetic process;1.01054826743406e-16!GO:0044249;cellular biosynthetic process;3.34886089003815e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.55157014191741e-16!GO:0003954;NADH dehydrogenase activity;7.55157014191741e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.55157014191741e-16!GO:0022607;cellular component assembly;9.4340982855078e-16!GO:0005634;nucleus;1.16703964266704e-15!GO:0012505;endomembrane system;1.18220855370794e-15!GO:0006512;ubiquitin cycle;2.48569946372937e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.76315402743887e-15!GO:0031980;mitochondrial lumen;5.06922504255413e-15!GO:0005759;mitochondrial matrix;5.06922504255413e-15!GO:0000166;nucleotide binding;6.28248102521589e-15!GO:0031981;nuclear lumen;1.61946793738091e-14!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.15164993969477e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.47146403479579e-14!GO:0045271;respiratory chain complex I;5.47146403479579e-14!GO:0005747;mitochondrial respiratory chain complex I;5.47146403479579e-14!GO:0045045;secretory pathway;5.96311505966377e-14!GO:0005681;spliceosome;6.82994703321182e-14!GO:0044445;cytosolic part;9.30320926586776e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.03548517805489e-13!GO:0042773;ATP synthesis coupled electron transport;1.03548517805489e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.42868324972084e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.73550841597009e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.75576940800921e-13!GO:0016462;pyrophosphatase activity;1.76476694218917e-13!GO:0043412;biopolymer modification;2.94089790925696e-13!GO:0016874;ligase activity;5.08787541285641e-13!GO:0006464;protein modification process;1.06340907475278e-12!GO:0017111;nucleoside-triphosphatase activity;1.40696341923349e-12!GO:0030135;coated vesicle;2.01473296481041e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.95557802943436e-12!GO:0006457;protein folding;4.06013003818073e-12!GO:0043687;post-translational protein modification;4.69308009379892e-12!GO:0048193;Golgi vesicle transport;1.00911272167759e-11!GO:0048770;pigment granule;1.683988463428e-11!GO:0042470;melanosome;1.683988463428e-11!GO:0032553;ribonucleotide binding;2.26663333186706e-11!GO:0032555;purine ribonucleotide binding;2.26663333186706e-11!GO:0015935;small ribosomal subunit;3.44385294791749e-11!GO:0006810;transport;3.46708874572166e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.08348691522187e-11!GO:0022618;protein-RNA complex assembly;4.7117040761628e-11!GO:0019829;cation-transporting ATPase activity;5.28398546174395e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.38299736096409e-11!GO:0043283;biopolymer metabolic process;5.50698222293238e-11!GO:0044431;Golgi apparatus part;8.87517702235392e-11!GO:0017076;purine nucleotide binding;2.50908810789607e-10!GO:0006605;protein targeting;2.64758400690174e-10!GO:0015934;large ribosomal subunit;3.39116947724738e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;3.4680005524792e-10!GO:0008135;translation factor activity, nucleic acid binding;3.47583641380008e-10!GO:0007399;nervous system development;3.66010154356488e-10!GO:0007264;small GTPase mediated signal transduction;4.27819417726871e-10!GO:0006511;ubiquitin-dependent protein catabolic process;4.63865762903579e-10!GO:0043228;non-membrane-bound organelle;4.64510510841372e-10!GO:0043232;intracellular non-membrane-bound organelle;4.64510510841372e-10!GO:0043005;neuron projection;5.44954366394408e-10!GO:0019941;modification-dependent protein catabolic process;5.80943504227978e-10!GO:0043632;modification-dependent macromolecule catabolic process;5.80943504227978e-10!GO:0051186;cofactor metabolic process;5.94397387131461e-10!GO:0051082;unfolded protein binding;6.7793787167718e-10!GO:0044257;cellular protein catabolic process;7.01161425245831e-10!GO:0008092;cytoskeletal protein binding;1.0670357162504e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.09251427404101e-09!GO:0005783;endoplasmic reticulum;1.4864390303171e-09!GO:0006793;phosphorus metabolic process;1.50547371924457e-09!GO:0006796;phosphate metabolic process;1.50547371924457e-09!GO:0005768;endosome;1.82184367092083e-09!GO:0003924;GTPase activity;1.89328413032624e-09!GO:0008565;protein transporter activity;1.92089446907447e-09!GO:0015986;ATP synthesis coupled proton transport;2.25737185860223e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.25737185860223e-09!GO:0005654;nucleoplasm;2.61588165359077e-09!GO:0000502;proteasome complex (sensu Eukaryota);3.25490872864172e-09!GO:0005761;mitochondrial ribosome;3.29269451394495e-09!GO:0000313;organellar ribosome;3.29269451394495e-09!GO:0030136;clathrin-coated vesicle;3.36960652666202e-09!GO:0044265;cellular macromolecule catabolic process;5.23607572824695e-09!GO:0005525;GTP binding;7.74847682111198e-09!GO:0032940;secretion by cell;1.00263815026099e-08!GO:0051234;establishment of localization;1.18597365647589e-08!GO:0030163;protein catabolic process;2.12736884917391e-08!GO:0008639;small protein conjugating enzyme activity;2.24982777470526e-08!GO:0000139;Golgi membrane;2.36996375087109e-08!GO:0051179;localization;2.41798232042713e-08!GO:0044451;nucleoplasm part;3.98069569901869e-08!GO:0007010;cytoskeleton organization and biogenesis;4.43667934898911e-08!GO:0044248;cellular catabolic process;4.79619218440424e-08!GO:0019717;synaptosome;4.80633875641485e-08!GO:0004842;ubiquitin-protein ligase activity;4.80633875641485e-08!GO:0016044;membrane organization and biogenesis;5.6942290001214e-08!GO:0043285;biopolymer catabolic process;6.24686436637731e-08!GO:0046034;ATP metabolic process;6.29582184336493e-08!GO:0009060;aerobic respiration;6.42996361272392e-08!GO:0019787;small conjugating protein ligase activity;8.02443209461289e-08!GO:0010467;gene expression;1.19443932514404e-07!GO:0006163;purine nucleotide metabolic process;1.19443932514404e-07!GO:0006413;translational initiation;1.21316699195825e-07!GO:0006754;ATP biosynthetic process;1.21861985773304e-07!GO:0006753;nucleoside phosphate metabolic process;1.21861985773304e-07!GO:0006732;coenzyme metabolic process;1.28082973362969e-07!GO:0008134;transcription factor binding;1.44575388959641e-07!GO:0009150;purine ribonucleotide metabolic process;1.48269596431388e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.48269596431388e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.48269596431388e-07!GO:0009141;nucleoside triphosphate metabolic process;1.55862188615025e-07!GO:0006164;purine nucleotide biosynthetic process;1.74622871703993e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.06663977706827e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.09148505857132e-07!GO:0003743;translation initiation factor activity;2.13947570040576e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.17458211083177e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.19985413218886e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.26397692577952e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.26700196857581e-07!GO:0008287;protein serine/threonine phosphatase complex;2.28998855854477e-07!GO:0005083;small GTPase regulator activity;2.46697267793382e-07!GO:0045333;cellular respiration;2.47316328794819e-07!GO:0009055;electron carrier activity;2.5702349220988e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.61968984701617e-07!GO:0032561;guanyl ribonucleotide binding;2.64562392070496e-07!GO:0019001;guanyl nucleotide binding;2.64562392070496e-07!GO:0030695;GTPase regulator activity;3.40944994445558e-07!GO:0006446;regulation of translational initiation;3.83811950354809e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.02998506759694e-07!GO:0009057;macromolecule catabolic process;4.16571373165924e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.16571373165924e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.16571373165924e-07!GO:0006461;protein complex assembly;4.16571373165924e-07!GO:0009259;ribonucleotide metabolic process;4.55681558191901e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.9607399220297e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.9607399220297e-07!GO:0015631;tubulin binding;6.1047490446597e-07!GO:0016881;acid-amino acid ligase activity;8.31007139193116e-07!GO:0009260;ribonucleotide biosynthetic process;1.37529888013079e-06!GO:0006099;tricarboxylic acid cycle;1.40967432541778e-06!GO:0046356;acetyl-CoA catabolic process;1.40967432541778e-06!GO:0048471;perinuclear region of cytoplasm;1.62054362065821e-06!GO:0016310;phosphorylation;1.62054362065821e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;1.66130156474182e-06!GO:0000375;RNA splicing, via transesterification reactions;1.66130156474182e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.66130156474182e-06!GO:0006913;nucleocytoplasmic transport;1.97918517231905e-06!GO:0030036;actin cytoskeleton organization and biogenesis;2.07796737319783e-06!GO:0031965;nuclear membrane;2.10906927169624e-06!GO:0051169;nuclear transport;2.68761533748774e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.82580534984839e-06!GO:0032559;adenyl ribonucleotide binding;2.93790996368427e-06!GO:0045259;proton-transporting ATP synthase complex;3.51846250283368e-06!GO:0008021;synaptic vesicle;3.85246086864234e-06!GO:0048475;coated membrane;3.88866766132715e-06!GO:0030117;membrane coat;3.88866766132715e-06!GO:0044440;endosomal part;4.11756249741343e-06!GO:0010008;endosome membrane;4.11756249741343e-06!GO:0009109;coenzyme catabolic process;4.22036115438151e-06!GO:0044432;endoplasmic reticulum part;4.66798240430386e-06!GO:0030425;dendrite;4.77643472843468e-06!GO:0006084;acetyl-CoA metabolic process;6.29521099292043e-06!GO:0005770;late endosome;7.13222679079086e-06!GO:0005905;coated pit;7.38606274432191e-06!GO:0005524;ATP binding;7.90334385051925e-06!GO:0019226;transmission of nerve impulse;8.77267312447725e-06!GO:0016604;nuclear body;9.18059602706542e-06!GO:0005635;nuclear envelope;9.18059602706542e-06!GO:0022890;inorganic cation transmembrane transporter activity;1.12293360060014e-05!GO:0015630;microtubule cytoskeleton;1.12293360060014e-05!GO:0030029;actin filament-based process;1.30190353203638e-05!GO:0032446;protein modification by small protein conjugation;1.621643964102e-05!GO:0017038;protein import;1.63171817692822e-05!GO:0019899;enzyme binding;1.63445424023413e-05!GO:0030554;adenyl nucleotide binding;1.97615701791613e-05!GO:0005769;early endosome;2.20661961942331e-05!GO:0051187;cofactor catabolic process;2.28827725433423e-05!GO:0005798;Golgi-associated vesicle;2.29167574799417e-05!GO:0016567;protein ubiquitination;2.89449969962743e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.30102888160477e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.42460343987212e-05!GO:0015399;primary active transmembrane transporter activity;3.42460343987212e-05!GO:0016607;nuclear speck;3.44135766439274e-05!GO:0003779;actin binding;3.48482594500788e-05!GO:0042623;ATPase activity, coupled;3.51766929456598e-05!GO:0005730;nucleolus;3.54019320107043e-05!GO:0005789;endoplasmic reticulum membrane;3.72539896194869e-05!GO:0030120;vesicle coat;3.96595017985552e-05!GO:0030662;coated vesicle membrane;3.96595017985552e-05!GO:0048489;synaptic vesicle transport;4.29447477517899e-05!GO:0051188;cofactor biosynthetic process;4.85395795065647e-05!GO:0007269;neurotransmitter secretion;4.92005606146199e-05!GO:0005874;microtubule;4.95795931707392e-05!GO:0016887;ATPase activity;5.50692569130773e-05!GO:0007242;intracellular signaling cascade;5.74814563150409e-05!GO:0051128;regulation of cellular component organization and biogenesis;7.17103325212438e-05!GO:0006897;endocytosis;7.5193381852428e-05!GO:0010324;membrane invagination;7.5193381852428e-05!GO:0008654;phospholipid biosynthetic process;7.70215083989345e-05!GO:0031252;leading edge;7.83626997527398e-05!GO:0009056;catabolic process;0.000115510864423306!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000132368877299217!GO:0016311;dephosphorylation;0.000150591329371107!GO:0046467;membrane lipid biosynthetic process;0.000159950353766914!GO:0008017;microtubule binding;0.000175541102488323!GO:0007268;synaptic transmission;0.000181627515009879!GO:0045055;regulated secretory pathway;0.000184941873734964!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000193353245255312!GO:0006888;ER to Golgi vesicle-mediated transport;0.000195845029696086!GO:0043492;ATPase activity, coupled to movement of substances;0.000220030070111333!GO:0004721;phosphoprotein phosphatase activity;0.000230238834814088!GO:0006650;glycerophospholipid metabolic process;0.000232840376695232!GO:0019208;phosphatase regulator activity;0.000238130259606834!GO:0000151;ubiquitin ligase complex;0.00023884545229164!GO:0030133;transport vesicle;0.000249289822674052!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000274793831109365!GO:0003729;mRNA binding;0.000292468122612542!GO:0003712;transcription cofactor activity;0.000309602784658999!GO:0000245;spliceosome assembly;0.000312027110209532!GO:0048523;negative regulation of cellular process;0.000323230219632825!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000327294509895344!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00032987242722702!GO:0006752;group transfer coenzyme metabolic process;0.000348789852397984!GO:0005793;ER-Golgi intermediate compartment;0.000350426178064025!GO:0006613;cotranslational protein targeting to membrane;0.000352876667405374!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000359219827973726!GO:0006323;DNA packaging;0.000361694671621342!GO:0000159;protein phosphatase type 2A complex;0.000370963106385871!GO:0005741;mitochondrial outer membrane;0.000395055769128317!GO:0006470;protein amino acid dephosphorylation;0.000402142799319539!GO:0009108;coenzyme biosynthetic process;0.000447059341180874!GO:0007265;Ras protein signal transduction;0.000459684403602041!GO:0044453;nuclear membrane part;0.000480294000299952!GO:0005773;vacuole;0.000494478511904139!GO:0016791;phosphoric monoester hydrolase activity;0.00052180032495801!GO:0019888;protein phosphatase regulator activity;0.000622987459148825!GO:0008601;protein phosphatase type 2A regulator activity;0.000639624017855226!GO:0000902;cell morphogenesis;0.000668965351100647!GO:0032989;cellular structure morphogenesis;0.000668965351100647!GO:0001505;regulation of neurotransmitter levels;0.000730253438165971!GO:0006643;membrane lipid metabolic process;0.000734875117932607!GO:0005643;nuclear pore;0.0007576479082605!GO:0015980;energy derivation by oxidation of organic compounds;0.000794585389322883!GO:0051246;regulation of protein metabolic process;0.000803537950525411!GO:0045786;negative regulation of progression through cell cycle;0.000882337842446274!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000882337842446274!GO:0008047;enzyme activator activity;0.00089418155382685!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00089418155382685!GO:0004812;aminoacyl-tRNA ligase activity;0.00089418155382685!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00089418155382685!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000971300455757629!GO:0007019;microtubule depolymerization;0.000992465534850564!GO:0019867;outer membrane;0.000998407333939362!GO:0006606;protein import into nucleus;0.00106247648481186!GO:0031968;organelle outer membrane;0.00107565640490132!GO:0004722;protein serine/threonine phosphatase activity;0.00112100667493756!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00119542819876973!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00119542819876973!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00119542819876973!GO:0031072;heat shock protein binding;0.00124354171220245!GO:0051170;nuclear import;0.0012930702146497!GO:0030027;lamellipodium;0.00132448010733918!GO:0030384;phosphoinositide metabolic process;0.00132849400667768!GO:0030118;clathrin coat;0.00136255264580231!GO:0051056;regulation of small GTPase mediated signal transduction;0.00136500383798886!GO:0043623;cellular protein complex assembly;0.00148449019107992!GO:0003697;single-stranded DNA binding;0.00157219678769531!GO:0019902;phosphatase binding;0.00160407650821337!GO:0016564;transcription repressor activity;0.00160651019807498!GO:0005762;mitochondrial large ribosomal subunit;0.00160940558465345!GO:0000315;organellar large ribosomal subunit;0.00160940558465345!GO:0016568;chromatin modification;0.0017453601756014!GO:0048167;regulation of synaptic plasticity;0.0017453601756014!GO:0000314;organellar small ribosomal subunit;0.0017453601756014!GO:0005763;mitochondrial small ribosomal subunit;0.0017453601756014!GO:0043566;structure-specific DNA binding;0.0017453601756014!GO:0043038;amino acid activation;0.0017453601756014!GO:0006418;tRNA aminoacylation for protein translation;0.0017453601756014!GO:0043039;tRNA aminoacylation;0.0017453601756014!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00175140116272247!GO:0006414;translational elongation;0.00177935661683226!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0018752119177094!GO:0009117;nucleotide metabolic process;0.00190039861993703!GO:0016197;endosome transport;0.00194105490884721!GO:0005516;calmodulin binding;0.00220127999493436!GO:0005875;microtubule associated complex;0.00223866695782965!GO:0008154;actin polymerization and/or depolymerization;0.00232750659309573!GO:0006403;RNA localization;0.00234836049880766!GO:0030427;site of polarized growth;0.00235033716522286!GO:0048519;negative regulation of biological process;0.0023783146316249!GO:0030426;growth cone;0.00250848480316312!GO:0006892;post-Golgi vesicle-mediated transport;0.0025729831383703!GO:0016301;kinase activity;0.00258620877496647!GO:0005869;dynactin complex;0.00264211931018309!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00264433094293555!GO:0016050;vesicle organization and biogenesis;0.00273574049245345!GO:0005096;GTPase activator activity;0.00274568223396102!GO:0050657;nucleic acid transport;0.00282926447990455!GO:0051236;establishment of RNA localization;0.00282926447990455!GO:0050658;RNA transport;0.00282926447990455!GO:0050767;regulation of neurogenesis;0.00283925724128577!GO:0050803;regulation of synapse structure and activity;0.00297201424386197!GO:0048487;beta-tubulin binding;0.00303988322858287!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00306283240953204!GO:0000323;lytic vacuole;0.00313095584010482!GO:0005764;lysosome;0.00313095584010482!GO:0031114;regulation of microtubule depolymerization;0.00318185231783405!GO:0007026;negative regulation of microtubule depolymerization;0.00318185231783405!GO:0031901;early endosome membrane;0.00320975528301675!GO:0016740;transferase activity;0.00322229127813104!GO:0005839;proteasome core complex (sensu Eukaryota);0.0032724306484317!GO:0005938;cell cortex;0.0034385899223339!GO:0012506;vesicle membrane;0.00361941023831001!GO:0030054;cell junction;0.00372443428392661!GO:0030424;axon;0.00372443428392661!GO:0030532;small nuclear ribonucleoprotein complex;0.00377699327366522!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00389250036411849!GO:0043209;myelin sheath;0.00390102447340825!GO:0022406;membrane docking;0.00398070588834723!GO:0048278;vesicle docking;0.00398070588834723!GO:0046488;phosphatidylinositol metabolic process;0.00417006131160306!GO:0065002;intracellular protein transport across a membrane;0.00421617473044416!GO:0008610;lipid biosynthetic process;0.00425257979807703!GO:0051427;hormone receptor binding;0.00431713924184614!GO:0006259;DNA metabolic process;0.00432990048941234!GO:0006891;intra-Golgi vesicle-mediated transport;0.00445303290517934!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00446814785865059!GO:0003714;transcription corepressor activity;0.00450388888001848!GO:0006333;chromatin assembly or disassembly;0.0045254488303979!GO:0031902;late endosome membrane;0.00468444043348273!GO:0006904;vesicle docking during exocytosis;0.00492343723627019!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00496138571356238!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00496138571356238!GO:0004674;protein serine/threonine kinase activity;0.00504388703715201!GO:0005048;signal sequence binding;0.005346623525552!GO:0051087;chaperone binding;0.00563715452208102!GO:0006612;protein targeting to membrane;0.00624908415204035!GO:0006665;sphingolipid metabolic process;0.0066331972184497!GO:0007017;microtubule-based process;0.00666663413984954!GO:0051540;metal cluster binding;0.00674612281214546!GO:0051536;iron-sulfur cluster binding;0.00674612281214546!GO:0019903;protein phosphatase binding;0.00675215251036806!GO:0044456;synapse part;0.00682596106784073!GO:0046474;glycerophospholipid biosynthetic process;0.00682596106784073!GO:0005085;guanyl-nucleotide exchange factor activity;0.00692215287768482!GO:0050811;GABA receptor binding;0.0069501055528049!GO:0048699;generation of neurons;0.00702648754900625!GO:0051261;protein depolymerization;0.00709860380808807!GO:0044433;cytoplasmic vesicle part;0.0072459765751931!GO:0030867;rough endoplasmic reticulum membrane;0.00725040790022834!GO:0008026;ATP-dependent helicase activity;0.00725040790022834!GO:0051920;peroxiredoxin activity;0.00725829885186519!GO:0035257;nuclear hormone receptor binding;0.00735572562305619!GO:0030660;Golgi-associated vesicle membrane;0.00757390574958498!GO:0022008;neurogenesis;0.00771657003441327!GO:0043681;protein import into mitochondrion;0.00800231748906101!GO:0001578;microtubule bundle formation;0.00801355503403723!GO:0005774;vacuolar membrane;0.00829032657508411!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00836288564712683!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00870908912029784!GO:0019198;transmembrane receptor protein phosphatase activity;0.00870908912029784!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00875322342468292!GO:0006644;phospholipid metabolic process;0.00890831564426266!GO:0030742;GTP-dependent protein binding;0.00900759809638235!GO:0006607;NLS-bearing substrate import into nucleus;0.009085685112629!GO:0030258;lipid modification;0.00925853937673791!GO:0016126;sterol biosynthetic process;0.00947057163056188!GO:0030041;actin filament polymerization;0.00956814409216475!GO:0042578;phosphoric ester hydrolase activity;0.00980373512378507!GO:0006818;hydrogen transport;0.00995311053827216!GO:0030132;clathrin coat of coated pit;0.00998948553257146!GO:0030658;transport vesicle membrane;0.010055101966896!GO:0003746;translation elongation factor activity;0.0102522017351773!GO:0050839;cell adhesion molecule binding;0.0103328274176764!GO:0004298;threonine endopeptidase activity;0.0103603497274195!GO:0003724;RNA helicase activity;0.0103603497274195!GO:0008180;signalosome;0.010872911784607!GO:0009165;nucleotide biosynthetic process;0.010872911784607!GO:0007611;learning and/or memory;0.0111755566765963!GO:0048500;signal recognition particle;0.0118013550992466!GO:0005791;rough endoplasmic reticulum;0.0122392960520258!GO:0006887;exocytosis;0.0123000303266001!GO:0007005;mitochondrion organization and biogenesis;0.0123060813422743!GO:0042254;ribosome biogenesis and assembly;0.0123577767788711!GO:0046578;regulation of Ras protein signal transduction;0.0125422417892636!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0125897468727878!GO:0008250;oligosaccharyl transferase complex;0.0126904394935387!GO:0007272;ensheathment of neurons;0.0128687611889976!GO:0008366;axon ensheathment;0.0128687611889976!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0129703722022801!GO:0044448;cell cortex part;0.0130273511078034!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0132476586571892!GO:0006091;generation of precursor metabolites and energy;0.0133384797579106!GO:0032011;ARF protein signal transduction;0.0138794723166517!GO:0032012;regulation of ARF protein signal transduction;0.0138794723166517!GO:0004386;helicase activity;0.0138798438833309!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0140975641455904!GO:0004667;prostaglandin-D synthase activity;0.0140975641455904!GO:0050802;circadian sleep/wake cycle, sleep;0.0140975641455904!GO:0022410;circadian sleep/wake cycle process;0.0140975641455904!GO:0042749;regulation of circadian sleep/wake cycle;0.0140975641455904!GO:0030182;neuron differentiation;0.0141545705512598!GO:0006402;mRNA catabolic process;0.0144508109013797!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0144673073323712!GO:0006672;ceramide metabolic process;0.0145822370388511!GO:0051276;chromosome organization and biogenesis;0.0148367707119817!GO:0015992;proton transport;0.0149370131011794!GO:0035035;histone acetyltransferase binding;0.0150844083019013!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0152229638007918!GO:0055083;monovalent inorganic anion homeostasis;0.0152229638007918!GO:0055064;chloride ion homeostasis;0.0152229638007918!GO:0030644;cellular chloride ion homeostasis;0.0152229638007918!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0152819279651824!GO:0008139;nuclear localization sequence binding;0.0160053459075524!GO:0006916;anti-apoptosis;0.0165316897869465!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0167992655550262!GO:0015002;heme-copper terminal oxidase activity;0.0167992655550262!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0167992655550262!GO:0004129;cytochrome-c oxidase activity;0.0167992655550262!GO:0005885;Arp2/3 protein complex;0.0170449726986027!GO:0007266;Rho protein signal transduction;0.0175082661824789!GO:0051287;NAD binding;0.0175082661824789!GO:0030125;clathrin vesicle coat;0.0175082661824789!GO:0030665;clathrin coated vesicle membrane;0.0175082661824789!GO:0019904;protein domain specific binding;0.0179433580027275!GO:0030137;COPI-coated vesicle;0.0181346733714813!GO:0019887;protein kinase regulator activity;0.0181346733714813!GO:0009966;regulation of signal transduction;0.0183377494656643!GO:0005765;lysosomal membrane;0.0186196911369453!GO:0030659;cytoplasmic vesicle membrane;0.0186211829374449!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0188000729828059!GO:0007006;mitochondrial membrane organization and biogenesis;0.0189618031232298!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0190022591473053!GO:0051028;mRNA transport;0.0190022591473053!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0190777520207472!GO:0045047;protein targeting to ER;0.0190777520207472!GO:0000059;protein import into nucleus, docking;0.0192085597629731!GO:0016079;synaptic vesicle exocytosis;0.0204369460432151!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0213434103233365!GO:0001508;regulation of action potential;0.0213693114458411!GO:0043021;ribonucleoprotein binding;0.021438531094343!GO:0031109;microtubule polymerization or depolymerization;0.021883850353583!GO:0004576;oligosaccharyl transferase activity;0.022069636773161!GO:0003730;mRNA 3'-UTR binding;0.0221389028061627!GO:0035258;steroid hormone receptor binding;0.0222483804372199!GO:0005868;cytoplasmic dynein complex;0.0226213283907058!GO:0004683;calmodulin-dependent protein kinase activity;0.0226938870029646!GO:0043284;biopolymer biosynthetic process;0.0228661218651269!GO:0046519;sphingoid metabolic process;0.0228661218651269!GO:0051168;nuclear export;0.0228661218651269!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0228661218651269!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0230596270101233!GO:0019843;rRNA binding;0.0236615389530767!GO:0044437;vacuolar part;0.0236627287126669!GO:0007034;vacuolar transport;0.0245546257033206!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.024684562443609!GO:0019894;kinesin binding;0.0247924392990251!GO:0031301;integral to organelle membrane;0.0248516349891125!GO:0031124;mRNA 3'-end processing;0.0250223557527297!GO:0046930;pore complex;0.0252720129190961!GO:0005092;GDP-dissociation inhibitor activity;0.0255239997674254!GO:0005100;Rho GTPase activator activity;0.02630051384483!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.02630051384483!GO:0033043;regulation of organelle organization and biogenesis;0.02630051384483!GO:0016579;protein deubiquitination;0.0271720285889899!GO:0005813;centrosome;0.028847148815831!GO:0030030;cell projection organization and biogenesis;0.0288767129703019!GO:0048858;cell projection morphogenesis;0.0288767129703019!GO:0032990;cell part morphogenesis;0.0288767129703019!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0291679789717914!GO:0045296;cadherin binding;0.0292553320851985!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0293300461663985!GO:0048666;neuron development;0.0297338197409069!GO:0030641;cellular hydrogen ion homeostasis;0.0312231318888162!GO:0046489;phosphoinositide biosynthetic process;0.0318245844320438!GO:0031371;ubiquitin conjugating enzyme complex;0.0326985193428853!GO:0008361;regulation of cell size;0.0329893289206789!GO:0043488;regulation of mRNA stability;0.0329893289206789!GO:0043487;regulation of RNA stability;0.0329893289206789!GO:0000904;cellular morphogenesis during differentiation;0.0329893289206789!GO:0000287;magnesium ion binding;0.0329893289206789!GO:0000062;acyl-CoA binding;0.033251997965265!GO:0043025;cell soma;0.0333824809501329!GO:0019911;structural constituent of myelin sheath;0.0334598635177589!GO:0051252;regulation of RNA metabolic process;0.0347052739395393!GO:0046839;phospholipid dephosphorylation;0.0349024425802914!GO:0001726;ruffle;0.0349024425802914!GO:0006661;phosphatidylinositol biosynthetic process;0.036194091414288!GO:0042176;regulation of protein catabolic process;0.0363830237736638!GO:0008312;7S RNA binding;0.0363830237736638!GO:0009892;negative regulation of metabolic process;0.0363910153302314!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0367457249683719!GO:0004423;iduronate-2-sulfatase activity;0.0370800927503711!GO:0042995;cell projection;0.0370979540202415!GO:0030911;TPR domain binding;0.0373194987072095!GO:0016859;cis-trans isomerase activity;0.0379065560974309!GO:0006595;polyamine metabolic process;0.0379426894056386!GO:0048168;regulation of neuronal synaptic plasticity;0.0384920983649907!GO:0008088;axon cargo transport;0.0392050759483389!GO:0006399;tRNA metabolic process;0.0406080183857083!GO:0019783;small conjugating protein-specific protease activity;0.0414421394784083!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0414741117263167!GO:0003713;transcription coactivator activity;0.0416271737160272!GO:0043069;negative regulation of programmed cell death;0.0421702296706541!GO:0042670;retinal cone cell differentiation;0.0425406918060332!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0425406918060332!GO:0046549;retinal cone cell development;0.0425406918060332!GO:0005099;Ras GTPase activator activity;0.042691475523536!GO:0033673;negative regulation of kinase activity;0.0429948594712067!GO:0006469;negative regulation of protein kinase activity;0.0429948594712067!GO:0004113;2',3'-cyclic-nucleotide 3'-phosphodiesterase activity;0.0434809928628364!GO:0009214;cyclic nucleotide catabolic process;0.0434809928628364!GO:0065004;protein-DNA complex assembly;0.0434873867038916!GO:0019207;kinase regulator activity;0.0443432406864471!GO:0008429;phosphatidylethanolamine binding;0.0455041188072862!GO:0043066;negative regulation of apoptosis;0.0460137432352319!GO:0008186;RNA-dependent ATPase activity;0.0469041462969054!GO:0051539;4 iron, 4 sulfur cluster binding;0.0478035004041734!GO:0007033;vacuole organization and biogenesis;0.0484158768636439!GO:0008090;retrograde axon cargo transport;0.0484158768636439!GO:0033596;TSC1-TSC2 complex;0.0484158768636439!GO:0033693;neurofilament bundle assembly;0.0484158768636439!GO:0043254;regulation of protein complex assembly;0.0484239538954244!GO:0048667;neuron morphogenesis during differentiation;0.0484288158460883!GO:0048812;neurite morphogenesis;0.0484288158460883!GO:0004843;ubiquitin-specific protease activity;0.0487968983874697!GO:0030176;integral to endoplasmic reticulum membrane;0.0487989453277575!GO:0032535;regulation of cellular component size;0.0489084742097183!GO:0030140;trans-Golgi network transport vesicle;0.0489491121546373!GO:0031628;opioid receptor binding;0.0489491121546373!GO:0031852;mu-type opioid receptor binding;0.0489491121546373!GO:0000209;protein polyubiquitination;0.0496400817765805!GO:0007049;cell cycle;0.0497246535634165!GO:0033130;acetylcholine receptor binding;0.0498998164454976 | |||
|sample_id=10076 | |sample_id=10076 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=occipital lobe | |sample_tissue=occipital lobe | ||
|top_motifs=HOXA9_MEIS1:4.7375570931;REST:4.51530246565;NHLH1,2:3.9384133188;ZBTB6:3.93687723764;EGR1..3:3.88896278486;MTE{core}:3.77089354565;MYFfamily:3.72923784919;MED-1{core}:3.62586249905;AHR_ARNT_ARNT2:3.58227002577;FOXM1:3.56811414321;ZFP161:3.53959720452;CUX2:3.40666287717;PRRX1,2:3.3467008012;TFAP2B:3.25256267825;MTF1:3.24603657608;PAX5:3.24021042788;DBP:3.1056940318;POU6F1:2.84719592997;HIC1:2.75114281438;GTF2I:2.73806840993;ATF2:2.68722234501;OCT4_SOX2{dimer}:2.68070890079;PAX6:2.58396310429;RFX1:2.56044349697;BREu{core}:2.52112105066;MZF1:2.50849985334;XBP1:2.42763017374;SOX5:2.39520465145;POU5F1:2.38438964541;PRDM1:2.33852421365;TFDP1:2.33815257992;NFIX:2.32894742463;LMO2:2.32623600605;HMGA1,2:2.27043148142;POU3F1..4:2.26636008524;GFI1B:2.25028562141;SMAD1..7,9:2.20808359381;HOX{A4,D4}:2.1640611611;SOX2:2.15707754699;PATZ1:2.12254316393;TEF:2.11461618879;CDC5L:2.10428903074;NKX3-2:2.09494172282;RREB1:2.05371220942;MAFB:2.01343433818;JUN:1.96641004232;GATA4:1.95668058555;GCM1,2:1.92463936416;ARID5B:1.9227796386;MAZ:1.90075699662;KLF4:1.89450639177;SOX17:1.88734737241;FOXQ1:1.87102682009;TGIF1:1.86282860222;RFX2..5_RFXANK_RFXAP:1.81106285041;FOXP1:1.68726269089;FOX{F1,F2,J1}:1.52329011041;SPZ1:1.49608778631;ZNF384:1.49307069144;SOX{8,9,10}:1.44494204504;NRF1:1.43539865154;ALX1:1.43452097099;NKX6-1,2:1.42495206274;LEF1_TCF7_TCF7L1,2:1.41641824722;MYOD1:1.41278619586;EBF1:1.37635593365;NKX2-3_NKX2-5:1.37342680071;ONECUT1,2:1.36828450205;HBP1_HMGB_SSRP1_UBTF:1.34886030176;FOXD3:1.29016703658;NFIL3:1.28090127186;IKZF2:1.26117096057;HAND1,2:1.2092133767;CRX:1.20826415605;TFAP2{A,C}:1.16573194217;RBPJ:1.12308895109;FOXL1:1.1205110318;ESRRA:1.09014525714;BPTF:1.06610053587;RORA:1.02853353592;ZNF423:1.02456193104;PAX4:1.00441865153;GTF2A1,2:0.998665163943;ZEB1:0.948980285005;FOXP3:0.945592266778;ZNF238:0.91543322024;NFE2L1:0.878614719112;UFEwm:0.827539586455;NANOG:0.825486949256;YY1:0.760770239172;ADNP_IRX_SIX_ZHX:0.740528108283;CREB1:0.732730054271;SREBF1,2:0.725959167723;T:0.713458543611;ZNF143:0.671688032483;MYBL2:0.638370789306;ATF5_CREB3:0.633301931943;TBX4,5:0.607180854808;EP300:0.573202155827;ATF4:0.56821350768;GZF1:0.502789276683;HMX1:0.488911026738;ZIC1..3:0.479334188619;MEF2{A,B,C,D}:0.463588817952;SP1:0.431363194161;POU1F1:0.4082615558;TLX2:0.374438965766;VSX1,2:0.36273276943;GFI1:0.290811717357;AR:0.25283243662;FOXN1:0.249146632763;IKZF1:0.214117733079;NKX2-2,8:0.202001057316;LHX3,4:0.12223595459;XCPE1{core}:0.119756687511;PAX8:0.079169157875;TLX1..3_NFIC{dimer}:0.0746385878448;ZBTB16:0.0387863158397;FOX{D1,D2}:0.0118211479571;FOX{I1,J2}:-0.0152519940996;STAT1,3:-0.0363476671895;bHLH_family:-0.0544061799662;PAX2:-0.0797634276885;PDX1:-0.135363244353;PAX1,9:-0.135380285724;NFE2L2:-0.162807543467;NR5A1,2:-0.173582420349;PBX1:-0.177362436876;HOX{A6,A7,B6,B7}:-0.196681743161;STAT2,4,6:-0.204082607355;NANOG{mouse}:-0.207962849112;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.210004232463;DMAP1_NCOR{1,2}_SMARC:-0.24810461191;TOPORS:-0.260694240141;IRF7:-0.263895538953;FOXA2:-0.27535546725;NR3C1:-0.309683587128;SNAI1..3:-0.354437487249;TFAP4:-0.354602376115;ATF6:-0.382647666503;ESR1:-0.431686176759;TAL1_TCF{3,4,12}:-0.435775004861;NFY{A,B,C}:-0.505754907191;FOXO1,3,4:-0.531830468411;IRF1,2:-0.564254114455;AIRE:-0.578843609741;SPI1:-0.589498649282;RXR{A,B,G}:-0.589544588928;TFCP2:-0.604668734111;CEBPA,B_DDIT3:-0.61207980288;NFATC1..3:-0.61920450089;ZNF148:-0.620976464904;NKX3-1:-0.673803894542;NFE2:-0.691808180696;EVI1:-0.709595003642;PAX3,7:-0.71304944547;NR1H4:-0.747774137962;SPIB:-0.822474924313;PITX1..3:-0.823591607137;GATA6:-0.829525610965;HNF1A:-0.851132159955;HNF4A_NR2F1,2:-0.894543706344;FOSL2:-1.06179802579;TEAD1:-1.06575665436;BACH2:-1.10241356005;TP53:-1.10985381807;FOS_FOS{B,L1}_JUN{B,D}:-1.11981740114;ETS1,2:-1.12919919635;ELK1,4_GABP{A,B1}:-1.15581514546;CDX1,2,4:-1.16427669557;RUNX1..3:-1.1736262891;ALX4:-1.18887013923;HSF1,2:-1.24450064293;GLI1..3:-1.26461889266;NFKB1_REL_RELA:-1.27968626182;HES1:-1.31720918354;E2F1..5:-1.34610493263;STAT5{A,B}:-1.37506995846;TBP:-1.39677417367;SRF:-1.39810703179;HIF1A:-1.40003460114;HLF:-1.43530139243;NKX2-1,4:-1.50336228062;MYB:-1.52250993645;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.53409738978;POU2F1..3:-1.570911808;RXRA_VDR{dimer}:-1.60301938369;PPARG:-1.78235991147;NR6A1:-1.91360414648;ELF1,2,4:-1.94209940192;HOX{A5,B5}:-2.13424212517;EN1,2:-2.17954942647 | |top_motifs=HOXA9_MEIS1:4.7375570931;REST:4.51530246565;NHLH1,2:3.9384133188;ZBTB6:3.93687723764;EGR1..3:3.88896278486;MTE{core}:3.77089354565;MYFfamily:3.72923784919;MED-1{core}:3.62586249905;AHR_ARNT_ARNT2:3.58227002577;FOXM1:3.56811414321;ZFP161:3.53959720452;CUX2:3.40666287717;PRRX1,2:3.3467008012;TFAP2B:3.25256267825;MTF1:3.24603657608;PAX5:3.24021042788;DBP:3.1056940318;POU6F1:2.84719592997;HIC1:2.75114281438;GTF2I:2.73806840993;ATF2:2.68722234501;OCT4_SOX2{dimer}:2.68070890079;PAX6:2.58396310429;RFX1:2.56044349697;BREu{core}:2.52112105066;MZF1:2.50849985334;XBP1:2.42763017374;SOX5:2.39520465145;POU5F1:2.38438964541;PRDM1:2.33852421365;TFDP1:2.33815257992;NFIX:2.32894742463;LMO2:2.32623600605;HMGA1,2:2.27043148142;POU3F1..4:2.26636008524;GFI1B:2.25028562141;SMAD1..7,9:2.20808359381;HOX{A4,D4}:2.1640611611;SOX2:2.15707754699;PATZ1:2.12254316393;TEF:2.11461618879;CDC5L:2.10428903074;NKX3-2:2.09494172282;RREB1:2.05371220942;MAFB:2.01343433818;JUN:1.96641004232;GATA4:1.95668058555;GCM1,2:1.92463936416;ARID5B:1.9227796386;MAZ:1.90075699662;KLF4:1.89450639177;SOX17:1.88734737241;FOXQ1:1.87102682009;TGIF1:1.86282860222;RFX2..5_RFXANK_RFXAP:1.81106285041;FOXP1:1.68726269089;FOX{F1,F2,J1}:1.52329011041;SPZ1:1.49608778631;ZNF384:1.49307069144;SOX{8,9,10}:1.44494204504;NRF1:1.43539865154;ALX1:1.43452097099;NKX6-1,2:1.42495206274;LEF1_TCF7_TCF7L1,2:1.41641824722;MYOD1:1.41278619586;EBF1:1.37635593365;NKX2-3_NKX2-5:1.37342680071;ONECUT1,2:1.36828450205;HBP1_HMGB_SSRP1_UBTF:1.34886030176;FOXD3:1.29016703658;NFIL3:1.28090127186;IKZF2:1.26117096057;HAND1,2:1.2092133767;CRX:1.20826415605;TFAP2{A,C}:1.16573194217;RBPJ:1.12308895109;FOXL1:1.1205110318;ESRRA:1.09014525714;BPTF:1.06610053587;RORA:1.02853353592;ZNF423:1.02456193104;PAX4:1.00441865153;GTF2A1,2:0.998665163943;ZEB1:0.948980285005;FOXP3:0.945592266778;ZNF238:0.91543322024;NFE2L1:0.878614719112;UFEwm:0.827539586455;NANOG:0.825486949256;YY1:0.760770239172;ADNP_IRX_SIX_ZHX:0.740528108283;CREB1:0.732730054271;SREBF1,2:0.725959167723;T:0.713458543611;ZNF143:0.671688032483;MYBL2:0.638370789306;ATF5_CREB3:0.633301931943;TBX4,5:0.607180854808;EP300:0.573202155827;ATF4:0.56821350768;GZF1:0.502789276683;HMX1:0.488911026738;ZIC1..3:0.479334188619;MEF2{A,B,C,D}:0.463588817952;SP1:0.431363194161;POU1F1:0.4082615558;TLX2:0.374438965766;VSX1,2:0.36273276943;GFI1:0.290811717357;AR:0.25283243662;FOXN1:0.249146632763;IKZF1:0.214117733079;NKX2-2,8:0.202001057316;LHX3,4:0.12223595459;XCPE1{core}:0.119756687511;PAX8:0.079169157875;TLX1..3_NFIC{dimer}:0.0746385878448;ZBTB16:0.0387863158397;FOX{D1,D2}:0.0118211479571;FOX{I1,J2}:-0.0152519940996;STAT1,3:-0.0363476671895;bHLH_family:-0.0544061799662;PAX2:-0.0797634276885;PDX1:-0.135363244353;PAX1,9:-0.135380285724;NFE2L2:-0.162807543467;NR5A1,2:-0.173582420349;PBX1:-0.177362436876;HOX{A6,A7,B6,B7}:-0.196681743161;STAT2,4,6:-0.204082607355;NANOG{mouse}:-0.207962849112;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.210004232463;DMAP1_NCOR{1,2}_SMARC:-0.24810461191;TOPORS:-0.260694240141;IRF7:-0.263895538953;FOXA2:-0.27535546725;NR3C1:-0.309683587128;SNAI1..3:-0.354437487249;TFAP4:-0.354602376115;ATF6:-0.382647666503;ESR1:-0.431686176759;TAL1_TCF{3,4,12}:-0.435775004861;NFY{A,B,C}:-0.505754907191;FOXO1,3,4:-0.531830468411;IRF1,2:-0.564254114455;AIRE:-0.578843609741;SPI1:-0.589498649282;RXR{A,B,G}:-0.589544588928;TFCP2:-0.604668734111;CEBPA,B_DDIT3:-0.61207980288;NFATC1..3:-0.61920450089;ZNF148:-0.620976464904;NKX3-1:-0.673803894542;NFE2:-0.691808180696;EVI1:-0.709595003642;PAX3,7:-0.71304944547;NR1H4:-0.747774137962;SPIB:-0.822474924313;PITX1..3:-0.823591607137;GATA6:-0.829525610965;HNF1A:-0.851132159955;HNF4A_NR2F1,2:-0.894543706344;FOSL2:-1.06179802579;TEAD1:-1.06575665436;BACH2:-1.10241356005;TP53:-1.10985381807;FOS_FOS{B,L1}_JUN{B,D}:-1.11981740114;ETS1,2:-1.12919919635;ELK1,4_GABP{A,B1}:-1.15581514546;CDX1,2,4:-1.16427669557;RUNX1..3:-1.1736262891;ALX4:-1.18887013923;HSF1,2:-1.24450064293;GLI1..3:-1.26461889266;NFKB1_REL_RELA:-1.27968626182;HES1:-1.31720918354;E2F1..5:-1.34610493263;STAT5{A,B}:-1.37506995846;TBP:-1.39677417367;SRF:-1.39810703179;HIF1A:-1.40003460114;HLF:-1.43530139243;NKX2-1,4:-1.50336228062;MYB:-1.52250993645;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.53409738978;POU2F1..3:-1.570911808;RXRA_VDR{dimer}:-1.60301938369;PPARG:-1.78235991147;NR6A1:-1.91360414648;ELF1,2,4:-1.94209940192;HOX{A5,B5}:-2.13424212517;EN1,2:-2.17954942647 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10076-102A4;search_select_hide=table117:FF:10076-102A4 | |||
}} | }} | ||
Latest revision as of 12:20, 3 June 2020
| Name: | occipital lobe, adult, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11787 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11787
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11787
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0512 |
| 10 | 10 | 0.0415 |
| 100 | 100 | 0.331 |
| 101 | 101 | 0.693 |
| 102 | 102 | 0.768 |
| 103 | 103 | 0.152 |
| 104 | 104 | 0.116 |
| 105 | 105 | 0.0985 |
| 106 | 106 | 0.0945 |
| 107 | 107 | 0.153 |
| 108 | 108 | 0.786 |
| 109 | 109 | 0.00674 |
| 11 | 11 | 0.0153 |
| 110 | 110 | 0.036 |
| 111 | 111 | 0.134 |
| 112 | 112 | 0.619 |
| 113 | 113 | 0.631 |
| 114 | 114 | 0.097 |
| 115 | 115 | 0.587 |
| 116 | 116 | 0.297 |
| 117 | 117 | 0.00903 |
| 118 | 118 | 0.153 |
| 119 | 119 | 0.19 |
| 12 | 12 | 0.517 |
| 120 | 120 | 0.23 |
| 121 | 121 | 0.393 |
| 122 | 122 | 0.744 |
| 123 | 123 | 0.787 |
| 124 | 124 | 0.0783 |
| 125 | 125 | 0.397 |
| 126 | 126 | 0.0266 |
| 127 | 127 | 0.381 |
| 128 | 128 | 0.255 |
| 129 | 129 | 0.58 |
| 13 | 13 | 4.87382e-4 |
| 130 | 130 | 0.133 |
| 131 | 131 | 0.208 |
| 132 | 132 | 0.612 |
| 133 | 133 | 0.00593 |
| 134 | 134 | 0.534 |
| 135 | 135 | 0.321 |
| 136 | 136 | 0.0113 |
| 137 | 137 | 0.66 |
| 138 | 138 | 0.779 |
| 139 | 139 | 0.153 |
| 14 | 14 | 0.692 |
| 140 | 140 | 0.587 |
| 141 | 141 | 0.339 |
| 142 | 142 | 0.626 |
| 143 | 143 | 0.0214 |
| 144 | 144 | 0.989 |
| 145 | 145 | 0.083 |
| 146 | 146 | 0.386 |
| 147 | 147 | 0.99 |
| 148 | 148 | 0.381 |
| 149 | 149 | 0.296 |
| 15 | 15 | 0.0736 |
| 150 | 150 | 0.154 |
| 151 | 151 | 0.649 |
| 152 | 152 | 0.13 |
| 153 | 153 | 0.765 |
| 154 | 154 | 0.519 |
| 155 | 155 | 0.369 |
| 156 | 156 | 0.295 |
| 157 | 157 | 0.424 |
| 158 | 158 | 0.796 |
| 159 | 159 | 0.189 |
| 16 | 16 | 0.0746 |
| 160 | 160 | 0.223 |
| 161 | 161 | 0.158 |
| 162 | 162 | 0.696 |
| 163 | 163 | 0.665 |
| 164 | 164 | 0.027 |
| 165 | 165 | 0.0535 |
| 166 | 166 | 0.803 |
| 167 | 167 | 0.52 |
| 168 | 168 | 0.404 |
| 169 | 169 | 0.0087 |
| 17 | 17 | 0.129 |
| 18 | 18 | 0.241 |
| 19 | 19 | 0.2 |
| 2 | 2 | 0.914 |
| 20 | 20 | 0.103 |
| 21 | 21 | 0.0949 |
| 22 | 22 | 0.194 |
| 23 | 23 | 0.413 |
| 24 | 24 | 0.0329 |
| 25 | 25 | 0.446 |
| 26 | 26 | 1.12338e-4 |
| 27 | 27 | 0.99 |
| 28 | 28 | 0.623 |
| 29 | 29 | 0.0121 |
| 3 | 3 | 0.0285 |
| 30 | 30 | 0.821 |
| 31 | 31 | 0.916 |
| 32 | 32 | 0.0403 |
| 33 | 33 | 0.0555 |
| 34 | 34 | 0.666 |
| 35 | 35 | 0.535 |
| 36 | 36 | 0.121 |
| 37 | 37 | 0.0353 |
| 38 | 38 | 0.276 |
| 39 | 39 | 0.248 |
| 4 | 4 | 0.878 |
| 40 | 40 | 0.0297 |
| 41 | 41 | 0.394 |
| 42 | 42 | 0.165 |
| 43 | 43 | 0.095 |
| 44 | 44 | 0.209 |
| 45 | 45 | 0.716 |
| 46 | 46 | 0.0672 |
| 47 | 47 | 0.0612 |
| 48 | 48 | 0.0503 |
| 49 | 49 | 0.127 |
| 5 | 5 | 0.487 |
| 50 | 50 | 0.232 |
| 51 | 51 | 0.472 |
| 52 | 52 | 0.617 |
| 53 | 53 | 0.984 |
| 54 | 54 | 0.407 |
| 55 | 55 | 0.422 |
| 56 | 56 | 0.475 |
| 57 | 57 | 0.35 |
| 58 | 58 | 0.288 |
| 59 | 59 | 0.147 |
| 6 | 6 | 0.77 |
| 60 | 60 | 0.0782 |
| 61 | 61 | 0.0598 |
| 62 | 62 | 0.173 |
| 63 | 63 | 0.152 |
| 64 | 64 | 0.237 |
| 65 | 65 | 0.284 |
| 66 | 66 | 0.132 |
| 67 | 67 | 0.315 |
| 68 | 68 | 0.306 |
| 69 | 69 | 0.495 |
| 7 | 7 | 0.0322 |
| 70 | 70 | 0.0556 |
| 71 | 71 | 0.00917 |
| 72 | 72 | 0.328 |
| 73 | 73 | 0.0385 |
| 74 | 74 | 0.571 |
| 75 | 75 | 0.0316 |
| 76 | 76 | 0.479 |
| 77 | 77 | 0.184 |
| 78 | 78 | 0.00284 |
| 79 | 79 | 0.476 |
| 8 | 8 | 0.096 |
| 80 | 80 | 0.545 |
| 81 | 81 | 0.691 |
| 82 | 82 | 0.718 |
| 83 | 83 | 0.0417 |
| 84 | 84 | 0.652 |
| 85 | 85 | 0.272 |
| 86 | 86 | 0.232 |
| 87 | 87 | 0.0036 |
| 88 | 88 | 0.864 |
| 89 | 89 | 0.55 |
| 9 | 9 | 0.403 |
| 90 | 90 | 0.0832 |
| 91 | 91 | 0.606 |
| 92 | 92 | 0.497 |
| 93 | 93 | 0.899 |
| 94 | 94 | 0.139 |
| 95 | 95 | 0.0213 |
| 96 | 96 | 0.82 |
| 97 | 97 | 0.718 |
| 98 | 98 | 0.194 |
| 99 | 99 | 0.734 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11787
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002021 (occipital lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010076 (human occipital lobe - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
