FF:11266-116G6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005486 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005486 | ||
|accession_numbers=CAGE;DRX008229;DRR009101;DRZ000526;DRZ001911;DRZ011876;DRZ013261 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037091;DRR041457;DRZ007099 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0004573,UBERON:0000487,UBERON:0005800,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001515,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544,CL:0002545 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000048,FF:0000001,FF:0000051 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11266-116G6 | |id=FF:11266-116G6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000051 | ||
|is_obsolete= | |||
|library_id=CNhs11926 | |||
|library_id_phase_based=2:CNhs11926 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11266 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.TGACCA.11266 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11266 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.TGACCA.11266 | |||
|name=Endothelial Cells - Thoracic, donor1 | |name=Endothelial Cells - Thoracic, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11926,LSID842,release011,COMPLETED | |profile_hcage=CNhs11926,LSID842,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA308-R10a | |rna_catalog_number=CA308-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116G6 | |rna_tube_id=116G6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10007.TGACCA | |||
|sample_age=34 | |sample_age=34 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.89828188071495e-245!GO:0043226;organelle;1.06430201451838e-195!GO:0043229;intracellular organelle;2.85462658687395e-195!GO:0043231;intracellular membrane-bound organelle;7.35040426119182e-190!GO:0043227;membrane-bound organelle;1.1801205188494e-189!GO:0005737;cytoplasm;2.58503457331122e-188!GO:0044422;organelle part;9.87963119967073e-152!GO:0044446;intracellular organelle part;3.52245195501119e-150!GO:0044444;cytoplasmic part;1.47629017015426e-136!GO:0032991;macromolecular complex;3.47536883854607e-107!GO:0044237;cellular metabolic process;4.48131509886531e-90!GO:0030529;ribonucleoprotein complex;9.84893849887603e-90!GO:0044238;primary metabolic process;1.23502698541024e-89!GO:0043170;macromolecule metabolic process;1.33023931580807e-83!GO:0005515;protein binding;1.31704451797636e-79!GO:0043233;organelle lumen;2.27756868123834e-75!GO:0031974;membrane-enclosed lumen;2.27756868123834e-75!GO:0044428;nuclear part;3.72800520939369e-75!GO:0005634;nucleus;4.0886729127389e-75!GO:0003723;RNA binding;4.73207672286613e-74!GO:0005739;mitochondrion;9.59588172128381e-70!GO:0019538;protein metabolic process;2.41222644936142e-56!GO:0043234;protein complex;2.4383860639594e-54!GO:0006396;RNA processing;1.60730648306448e-53!GO:0031090;organelle membrane;1.36198804062737e-52!GO:0005840;ribosome;7.32638577017115e-52!GO:0006412;translation;2.89021425407084e-51!GO:0044267;cellular protein metabolic process;4.79709500329622e-50!GO:0044260;cellular macromolecule metabolic process;1.19192969823682e-49!GO:0016043;cellular component organization and biogenesis;1.12723345370943e-48!GO:0044429;mitochondrial part;3.05515645311848e-48!GO:0031981;nuclear lumen;4.44412894080704e-46!GO:0003735;structural constituent of ribosome;2.71859448683404e-45!GO:0043283;biopolymer metabolic process;3.30527205381756e-45!GO:0031967;organelle envelope;1.27340936499398e-44!GO:0031975;envelope;3.0858803491098e-44!GO:0005829;cytosol;3.46757438734459e-43!GO:0009058;biosynthetic process;1.07451205620958e-40!GO:0015031;protein transport;2.94365131077601e-40!GO:0044249;cellular biosynthetic process;6.0127912075544e-40!GO:0033036;macromolecule localization;1.02345951446224e-39!GO:0033279;ribosomal subunit;1.47135773584213e-39!GO:0043228;non-membrane-bound organelle;2.21014620116403e-39!GO:0043232;intracellular non-membrane-bound organelle;2.21014620116403e-39!GO:0016071;mRNA metabolic process;3.23370497328622e-39!GO:0009059;macromolecule biosynthetic process;5.67780636620365e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.55122862619039e-38!GO:0008380;RNA splicing;4.90654426103019e-38!GO:0010467;gene expression;8.53202359392257e-38!GO:0045184;establishment of protein localization;9.5826224336567e-37!GO:0006996;organelle organization and biogenesis;2.12106669844645e-36!GO:0008104;protein localization;4.16349394544918e-36!GO:0006397;mRNA processing;2.09996201215797e-35!GO:0046907;intracellular transport;6.38573856611799e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.71576686119714e-33!GO:0065003;macromolecular complex assembly;1.26756006293768e-32!GO:0005740;mitochondrial envelope;1.83042494973513e-32!GO:0031966;mitochondrial membrane;1.71033827371635e-30!GO:0006259;DNA metabolic process;2.02550049516901e-30!GO:0022607;cellular component assembly;3.61299265769024e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.00838554506541e-28!GO:0019866;organelle inner membrane;4.35524709544445e-28!GO:0000166;nucleotide binding;5.11914090441468e-28!GO:0006886;intracellular protein transport;8.31325073102617e-28!GO:0005654;nucleoplasm;1.31665031109395e-27!GO:0005681;spliceosome;2.00554708710598e-27!GO:0005743;mitochondrial inner membrane;2.21138762090711e-26!GO:0007049;cell cycle;2.25797594671888e-26!GO:0044445;cytosolic part;4.44899049733042e-24!GO:0051649;establishment of cellular localization;1.91753367658991e-23!GO:0051641;cellular localization;3.31450191674694e-23!GO:0016462;pyrophosphatase activity;9.6290960112715e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.20753407452299e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.79844505939442e-22!GO:0017111;nucleoside-triphosphatase activity;2.83127130609789e-22!GO:0006119;oxidative phosphorylation;6.64134239347721e-22!GO:0044451;nucleoplasm part;8.12991325220499e-22!GO:0012505;endomembrane system;2.74188514176281e-21!GO:0015934;large ribosomal subunit;6.78277566732659e-21!GO:0044455;mitochondrial membrane part;8.29989059535876e-21!GO:0006457;protein folding;8.40263574180998e-21!GO:0005730;nucleolus;3.13385162798593e-20!GO:0022402;cell cycle process;3.67598358551856e-20!GO:0017076;purine nucleotide binding;6.66628971942557e-20!GO:0032553;ribonucleotide binding;9.56198838912113e-20!GO:0032555;purine ribonucleotide binding;9.56198838912113e-20!GO:0015935;small ribosomal subunit;1.25553041110986e-19!GO:0031980;mitochondrial lumen;1.82260846767497e-19!GO:0005759;mitochondrial matrix;1.82260846767497e-19!GO:0003676;nucleic acid binding;2.24359888459313e-19!GO:0000278;mitotic cell cycle;2.49495045981382e-19!GO:0016874;ligase activity;4.56161372985992e-19!GO:0022618;protein-RNA complex assembly;4.88359142716582e-18!GO:0005783;endoplasmic reticulum;9.38283144521691e-18!GO:0006974;response to DNA damage stimulus;9.77335569623529e-18!GO:0006512;ubiquitin cycle;1.83480069092554e-17!GO:0044265;cellular macromolecule catabolic process;3.04864292236796e-17!GO:0000502;proteasome complex (sensu Eukaryota);5.65541259846181e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.82053474500963e-16!GO:0019941;modification-dependent protein catabolic process;2.88456116469734e-16!GO:0043632;modification-dependent macromolecule catabolic process;2.88456116469734e-16!GO:0043285;biopolymer catabolic process;3.22188577240042e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.15864700845808e-16!GO:0005746;mitochondrial respiratory chain;4.15864700845808e-16!GO:0044257;cellular protein catabolic process;4.75375105638363e-16!GO:0043412;biopolymer modification;5.2670019114551e-16!GO:0005524;ATP binding;7.31580285179903e-16!GO:0032559;adenyl ribonucleotide binding;7.84060027120779e-16!GO:0030554;adenyl nucleotide binding;7.87904405816588e-16!GO:0042254;ribosome biogenesis and assembly;1.06836529565504e-15!GO:0009057;macromolecule catabolic process;1.33231771962356e-15!GO:0005694;chromosome;1.38326780060117e-15!GO:0008135;translation factor activity, nucleic acid binding;1.4814993060842e-15!GO:0008134;transcription factor binding;1.64570237688953e-15!GO:0005794;Golgi apparatus;1.83707022450751e-15!GO:0051186;cofactor metabolic process;2.46661172498648e-15!GO:0006605;protein targeting;2.84086635112798e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.95763709872797e-15!GO:0048770;pigment granule;3.6625393777905e-15!GO:0042470;melanosome;3.6625393777905e-15!GO:0005761;mitochondrial ribosome;5.47165064776309e-15!GO:0000313;organellar ribosome;5.47165064776309e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;6.62684423843907e-15!GO:0000375;RNA splicing, via transesterification reactions;6.62684423843907e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.62684423843907e-15!GO:0000087;M phase of mitotic cell cycle;7.89443796996636e-15!GO:0006281;DNA repair;1.22747353877844e-14!GO:0007067;mitosis;1.39746602109519e-14!GO:0044432;endoplasmic reticulum part;1.41272872335343e-14!GO:0016192;vesicle-mediated transport;1.50339192003385e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.6425964026834e-14!GO:0003954;NADH dehydrogenase activity;1.6425964026834e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.6425964026834e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.84525032106085e-14!GO:0016070;RNA metabolic process;2.023163279814e-14!GO:0044248;cellular catabolic process;2.10402338692002e-14!GO:0030163;protein catabolic process;2.39747501040657e-14!GO:0051301;cell division;2.6098349797605e-14!GO:0006464;protein modification process;3.26667791772993e-14!GO:0044427;chromosomal part;5.34619598912387e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.3625968470703e-14!GO:0051082;unfolded protein binding;1.25375797100348e-13!GO:0022403;cell cycle phase;1.9420454503327e-13!GO:0048193;Golgi vesicle transport;2.29283757220326e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.47754774327145e-13!GO:0005635;nuclear envelope;4.93394626620267e-13!GO:0042623;ATPase activity, coupled;5.03777009900587e-13!GO:0016887;ATPase activity;5.10740773617366e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.36356342925525e-13!GO:0042773;ATP synthesis coupled electron transport;6.36356342925525e-13!GO:0006260;DNA replication;9.74447711299793e-13!GO:0009719;response to endogenous stimulus;1.2785881011853e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.42251631743888e-12!GO:0045271;respiratory chain complex I;1.42251631743888e-12!GO:0005747;mitochondrial respiratory chain complex I;1.42251631743888e-12!GO:0051276;chromosome organization and biogenesis;2.14790557739046e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.05054631489342e-12!GO:0043687;post-translational protein modification;3.82585731592513e-12!GO:0016604;nuclear body;4.95598315983434e-12!GO:0003743;translation initiation factor activity;5.76727471466093e-12!GO:0044453;nuclear membrane part;6.85881271574403e-12!GO:0051726;regulation of cell cycle;7.26862355122438e-12!GO:0031965;nuclear membrane;7.66005684935727e-12!GO:0012501;programmed cell death;9.55619744816924e-12!GO:0006915;apoptosis;1.03957403122736e-11!GO:0000074;regulation of progression through cell cycle;1.08523090405807e-11!GO:0006732;coenzyme metabolic process;1.12057572299099e-11!GO:0009259;ribonucleotide metabolic process;2.59918904808879e-11!GO:0006413;translational initiation;2.91229563995171e-11!GO:0006163;purine nucleotide metabolic process;3.89755352945205e-11!GO:0008639;small protein conjugating enzyme activity;3.9868432849922e-11!GO:0006399;tRNA metabolic process;4.42603597259293e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.08796046920049e-11!GO:0000279;M phase;7.74346773005406e-11!GO:0004842;ubiquitin-protein ligase activity;8.38216581430496e-11!GO:0009055;electron carrier activity;9.6242547915001e-11!GO:0003712;transcription cofactor activity;1.2361444679389e-10!GO:0004386;helicase activity;1.42914746490106e-10!GO:0009150;purine ribonucleotide metabolic process;1.50994621275432e-10!GO:0019787;small conjugating protein ligase activity;1.6973585162058e-10!GO:0006364;rRNA processing;1.87305568219764e-10!GO:0006446;regulation of translational initiation;2.0905798995103e-10!GO:0005789;endoplasmic reticulum membrane;2.18453264207861e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.32243165094761e-10!GO:0005793;ER-Golgi intermediate compartment;2.45240825934032e-10!GO:0008219;cell death;3.00478009912972e-10!GO:0016265;death;3.00478009912972e-10!GO:0008026;ATP-dependent helicase activity;3.50859063008413e-10!GO:0016072;rRNA metabolic process;4.30231394851908e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.02583526152278e-10!GO:0006164;purine nucleotide biosynthetic process;5.16494149823489e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.3036203244915e-10!GO:0006461;protein complex assembly;5.51083814971821e-10!GO:0006323;DNA packaging;6.58121333175378e-10!GO:0006913;nucleocytoplasmic transport;7.22762591037857e-10!GO:0009199;ribonucleoside triphosphate metabolic process;7.57459407484333e-10!GO:0008565;protein transporter activity;7.87760329024031e-10!GO:0009260;ribonucleotide biosynthetic process;9.78295819009716e-10!GO:0009141;nucleoside triphosphate metabolic process;1.04515735857357e-09!GO:0005643;nuclear pore;1.14099105886566e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.53197275286721e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.53197275286721e-09!GO:0051169;nuclear transport;1.96814532087426e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.97932703618472e-09!GO:0016607;nuclear speck;1.97932703618472e-09!GO:0016881;acid-amino acid ligase activity;4.00675757861271e-09!GO:0065002;intracellular protein transport across a membrane;4.4773159112194e-09!GO:0000785;chromatin;4.50253229099117e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.33909672659589e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.73341366842108e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.13915337217865e-09!GO:0015630;microtubule cytoskeleton;1.08925102235506e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.37457869758464e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.37457869758464e-08!GO:0046034;ATP metabolic process;1.51317224453478e-08!GO:0046930;pore complex;1.57920182768888e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.89399206442584e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.89399206442584e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.89399206442584e-08!GO:0009056;catabolic process;1.9720284644097e-08!GO:0050657;nucleic acid transport;1.9858941180635e-08!GO:0051236;establishment of RNA localization;1.9858941180635e-08!GO:0050658;RNA transport;1.9858941180635e-08!GO:0015986;ATP synthesis coupled proton transport;2.10708451295399e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.10708451295399e-08!GO:0006333;chromatin assembly or disassembly;2.32689903518421e-08!GO:0006403;RNA localization;2.5103153576998e-08!GO:0050794;regulation of cellular process;2.69300330254907e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.70258725365663e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.70258725365663e-08!GO:0043038;amino acid activation;2.93453065421961e-08!GO:0006418;tRNA aminoacylation for protein translation;2.93453065421961e-08!GO:0043039;tRNA aminoacylation;2.93453065421961e-08!GO:0009060;aerobic respiration;3.19148101920924e-08!GO:0006793;phosphorus metabolic process;4.33459101711638e-08!GO:0006796;phosphate metabolic process;4.33459101711638e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.63475695215125e-08!GO:0065004;protein-DNA complex assembly;4.90672800223618e-08!GO:0051246;regulation of protein metabolic process;5.02508942973575e-08!GO:0048523;negative regulation of cellular process;5.39595091520226e-08!GO:0051188;cofactor biosynthetic process;8.82640143909894e-08!GO:0007005;mitochondrion organization and biogenesis;1.13025512463126e-07!GO:0045333;cellular respiration;1.18586359118449e-07!GO:0017038;protein import;1.42423680935977e-07!GO:0009117;nucleotide metabolic process;1.5005065402749e-07!GO:0016787;hydrolase activity;1.88846139118791e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.95207412372667e-07!GO:0019829;cation-transporting ATPase activity;1.97147074293063e-07!GO:0006754;ATP biosynthetic process;2.47646495136528e-07!GO:0006753;nucleoside phosphate metabolic process;2.47646495136528e-07!GO:0016779;nucleotidyltransferase activity;3.04820274051366e-07!GO:0003924;GTPase activity;3.12062741566802e-07!GO:0042981;regulation of apoptosis;3.27035843873761e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.33269024737289e-07!GO:0032446;protein modification by small protein conjugation;3.33269024737289e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.49722610295445e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.61037681986629e-07!GO:0043067;regulation of programmed cell death;4.3041066985029e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.41378714834438e-07!GO:0016740;transferase activity;4.41378714834438e-07!GO:0016310;phosphorylation;4.46193619488417e-07!GO:0043069;negative regulation of programmed cell death;4.75488293305381e-07!GO:0005768;endosome;4.82714453895582e-07!GO:0016567;protein ubiquitination;4.97038407572436e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.2212443526357e-07!GO:0044431;Golgi apparatus part;5.73860613215582e-07!GO:0006916;anti-apoptosis;6.06121380860243e-07!GO:0006366;transcription from RNA polymerase II promoter;6.11364552256925e-07!GO:0005525;GTP binding;7.09459733333933e-07!GO:0051028;mRNA transport;7.4557396895591e-07!GO:0043066;negative regulation of apoptosis;7.54578091155892e-07!GO:0006099;tricarboxylic acid cycle;7.59857753300079e-07!GO:0046356;acetyl-CoA catabolic process;7.59857753300079e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.03757845675574e-07!GO:0031988;membrane-bound vesicle;8.96014532860823e-07!GO:0003697;single-stranded DNA binding;9.61014727473816e-07!GO:0005813;centrosome;9.65368420679741e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.87082179391355e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.0544927415822e-06!GO:0000245;spliceosome assembly;1.06653952102535e-06!GO:0045259;proton-transporting ATP synthase complex;1.30626353334207e-06!GO:0006084;acetyl-CoA metabolic process;1.49195926094003e-06!GO:0005819;spindle;1.63125213149384e-06!GO:0003724;RNA helicase activity;1.64677034477402e-06!GO:0048519;negative regulation of biological process;1.73336600496688e-06!GO:0051187;cofactor catabolic process;1.94493358558792e-06!GO:0030120;vesicle coat;2.11794116562903e-06!GO:0030662;coated vesicle membrane;2.11794116562903e-06!GO:0009108;coenzyme biosynthetic process;2.16247317996001e-06!GO:0005815;microtubule organizing center;2.71898507381853e-06!GO:0031252;leading edge;2.7621337967554e-06!GO:0006334;nucleosome assembly;3.11365633441797e-06!GO:0005788;endoplasmic reticulum lumen;3.39199903681344e-06!GO:0000151;ubiquitin ligase complex;3.52061716485713e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.87525356277601e-06!GO:0048475;coated membrane;4.01821217173699e-06!GO:0030117;membrane coat;4.01821217173699e-06!GO:0004298;threonine endopeptidase activity;4.2594437682255e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.66193937769797e-06!GO:0031497;chromatin assembly;4.99275046798357e-06!GO:0006752;group transfer coenzyme metabolic process;5.34440460745682e-06!GO:0005770;late endosome;5.42808444123573e-06!GO:0031968;organelle outer membrane;5.4786384543513e-06!GO:0043566;structure-specific DNA binding;5.57283539076805e-06!GO:0031982;vesicle;6.24942510231943e-06!GO:0019867;outer membrane;6.28571924085384e-06!GO:0006613;cotranslational protein targeting to membrane;6.34037479780344e-06!GO:0045786;negative regulation of progression through cell cycle;6.52438110592731e-06!GO:0044440;endosomal part;6.73675498444947e-06!GO:0010008;endosome membrane;6.73675498444947e-06!GO:0009109;coenzyme catabolic process;6.92904072362355e-06!GO:0005667;transcription factor complex;7.46166650957796e-06!GO:0016568;chromatin modification;7.49484102233927e-06!GO:0031410;cytoplasmic vesicle;8.05472378523874e-06!GO:0016853;isomerase activity;8.2739917980536e-06!GO:0003713;transcription coactivator activity;8.4617107126483e-06!GO:0000139;Golgi membrane;9.51826473679838e-06!GO:0007010;cytoskeleton organization and biogenesis;9.83483011406635e-06!GO:0030036;actin cytoskeleton organization and biogenesis;9.99883456862146e-06!GO:0016491;oxidoreductase activity;1.04795078057203e-05!GO:0045454;cell redox homeostasis;1.07850793417649e-05!GO:0019899;enzyme binding;1.18951395578513e-05!GO:0032561;guanyl ribonucleotide binding;1.22713752418526e-05!GO:0019001;guanyl nucleotide binding;1.22713752418526e-05!GO:0005762;mitochondrial large ribosomal subunit;1.23393726082302e-05!GO:0000315;organellar large ribosomal subunit;1.23393726082302e-05!GO:0005769;early endosome;1.28918076900531e-05!GO:0043623;cellular protein complex assembly;1.38926535904235e-05!GO:0051325;interphase;1.40222752832069e-05!GO:0007051;spindle organization and biogenesis;1.55756972321694e-05!GO:0051329;interphase of mitotic cell cycle;1.67650351150728e-05!GO:0003899;DNA-directed RNA polymerase activity;1.88101169358264e-05!GO:0005773;vacuole;1.88850347825746e-05!GO:0007243;protein kinase cascade;2.52215967361268e-05!GO:0005741;mitochondrial outer membrane;2.67618200145056e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.78314935086408e-05!GO:0051170;nuclear import;3.33399219313162e-05!GO:0000775;chromosome, pericentric region;3.39619838468731e-05!GO:0008654;phospholipid biosynthetic process;4.34552642389963e-05!GO:0016859;cis-trans isomerase activity;4.34552642389963e-05!GO:0030029;actin filament-based process;4.36268878033535e-05!GO:0016044;membrane organization and biogenesis;4.51754148469084e-05!GO:0006261;DNA-dependent DNA replication;4.56303414857331e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.69687352728189e-05!GO:0030867;rough endoplasmic reticulum membrane;4.9209263621923e-05!GO:0003714;transcription corepressor activity;5.79558957882209e-05!GO:0006612;protein targeting to membrane;5.90383767626999e-05!GO:0008186;RNA-dependent ATPase activity;6.16667096023283e-05!GO:0006606;protein import into nucleus;6.43169790889081e-05!GO:0050789;regulation of biological process;6.52159936555964e-05!GO:0044452;nucleolar part;7.11428944300928e-05!GO:0043021;ribonucleoprotein binding;8.13240822166187e-05!GO:0065009;regulation of a molecular function;8.179867942301e-05!GO:0000314;organellar small ribosomal subunit;8.71314306784293e-05!GO:0005763;mitochondrial small ribosomal subunit;8.71314306784293e-05!GO:0000323;lytic vacuole;0.000104594336750878!GO:0005764;lysosome;0.000104594336750878!GO:0051427;hormone receptor binding;0.000107622203660907!GO:0030880;RNA polymerase complex;0.000107622203660907!GO:0051087;chaperone binding;0.000120216023718182!GO:0009165;nucleotide biosynthetic process;0.00012150861220737!GO:0007264;small GTPase mediated signal transduction;0.000123924424872393!GO:0005798;Golgi-associated vesicle;0.000132470813272693!GO:0000075;cell cycle checkpoint;0.000135281082695706!GO:0006091;generation of precursor metabolites and energy;0.000136923793477459!GO:0006950;response to stress;0.000150370811017298!GO:0006383;transcription from RNA polymerase III promoter;0.000171292815403059!GO:0016563;transcription activator activity;0.000177263939482052!GO:0004004;ATP-dependent RNA helicase activity;0.000183012057417579!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000206627270641272!GO:0008047;enzyme activator activity;0.00022682629424394!GO:0035257;nuclear hormone receptor binding;0.000227310999006374!GO:0033116;ER-Golgi intermediate compartment membrane;0.000250559024460411!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000253909489126225!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000272121959583852!GO:0000428;DNA-directed RNA polymerase complex;0.000272121959583852!GO:0006626;protein targeting to mitochondrion;0.000290150983242676!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000298236327220635!GO:0015399;primary active transmembrane transporter activity;0.000298236327220635!GO:0042802;identical protein binding;0.000331286527144543!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000335788023778299!GO:0005048;signal sequence binding;0.000338846171456797!GO:0006839;mitochondrial transport;0.0003392796560749!GO:0008033;tRNA processing;0.000379884168866429!GO:0048471;perinuclear region of cytoplasm;0.00038148216999099!GO:0016363;nuclear matrix;0.000381737619696505!GO:0048522;positive regulation of cellular process;0.000410077128771313!GO:0006414;translational elongation;0.000412933280479129!GO:0005657;replication fork;0.000419794826365127!GO:0043681;protein import into mitochondrion;0.000421769830442844!GO:0008094;DNA-dependent ATPase activity;0.000421935809987514!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000498100978254972!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000500008680296044!GO:0051168;nuclear export;0.000501549335532581!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000524387904855578!GO:0005885;Arp2/3 protein complex;0.00053923842735249!GO:0008092;cytoskeletal protein binding;0.000585882473843065!GO:0003684;damaged DNA binding;0.000616724105332424!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000687921167562868!GO:0006302;double-strand break repair;0.000706737915935662!GO:0005905;coated pit;0.000710186603321127!GO:0003729;mRNA binding;0.000812056144638193!GO:0008632;apoptotic program;0.000818460971397751!GO:0015980;energy derivation by oxidation of organic compounds;0.000838223577112923!GO:0019843;rRNA binding;0.00094045130035176!GO:0051920;peroxiredoxin activity;0.00109894416923054!GO:0031072;heat shock protein binding;0.0011171897792885!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00114891422547316!GO:0000059;protein import into nucleus, docking;0.00117806359277443!GO:0007006;mitochondrial membrane organization and biogenesis;0.00118024830609428!GO:0005096;GTPase activator activity;0.00122600243309655!GO:0003678;DNA helicase activity;0.00122683094532578!GO:0003682;chromatin binding;0.00136054590651677!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00139888836768239!GO:0016564;transcription repressor activity;0.00148050112214348!GO:0048500;signal recognition particle;0.00151104083999267!GO:0000786;nucleosome;0.00162333487112992!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00162333487112992!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00162333487112992!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00162333487112992!GO:0046483;heterocycle metabolic process;0.00170413744443702!GO:0005684;U2-dependent spliceosome;0.00170986365432727!GO:0006818;hydrogen transport;0.00179630567546555!GO:0000776;kinetochore;0.00181792277423702!GO:0015992;proton transport;0.00185593808213522!GO:0007050;cell cycle arrest;0.00201422273997284!GO:0050790;regulation of catalytic activity;0.00210970982628698!GO:0008139;nuclear localization sequence binding;0.00225712013964449!GO:0046474;glycerophospholipid biosynthetic process;0.00230264606640489!GO:0046489;phosphoinositide biosynthetic process;0.00235972503494805!GO:0005874;microtubule;0.00258154141557629!GO:0008312;7S RNA binding;0.00259644083778832!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00262833100522582!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0026758648439821!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0026758648439821!GO:0043492;ATPase activity, coupled to movement of substances;0.00270466539713165!GO:0007052;mitotic spindle organization and biogenesis;0.00277809002653805!GO:0046467;membrane lipid biosynthetic process;0.00287617882149723!GO:0030133;transport vesicle;0.0028833318798035!GO:0007265;Ras protein signal transduction;0.00289090019446655!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.002957531697715!GO:0007088;regulation of mitosis;0.00314562445556713!GO:0030134;ER to Golgi transport vesicle;0.00316937213208676!GO:0030658;transport vesicle membrane;0.00319512980023627!GO:0051789;response to protein stimulus;0.00323333665371692!GO:0006986;response to unfolded protein;0.00323333665371692!GO:0035258;steroid hormone receptor binding;0.0033237696559453!GO:0000049;tRNA binding;0.00333008718677651!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00349925420673236!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00350709833704716!GO:0045047;protein targeting to ER;0.00350709833704716!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00383658153150345!GO:0065007;biological regulation;0.00383658153150345!GO:0016197;endosome transport;0.00389533112010808!GO:0006289;nucleotide-excision repair;0.00391396204364845!GO:0006897;endocytosis;0.00402779366647442!GO:0010324;membrane invagination;0.00402779366647442!GO:0006402;mRNA catabolic process;0.00403393363461555!GO:0017166;vinculin binding;0.00442664539425499!GO:0031324;negative regulation of cellular metabolic process;0.00454423692515871!GO:0000082;G1/S transition of mitotic cell cycle;0.00455751568640497!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00455751568640497!GO:0030521;androgen receptor signaling pathway;0.00461784245793563!GO:0030127;COPII vesicle coat;0.00469409447602107!GO:0012507;ER to Golgi transport vesicle membrane;0.00469409447602107!GO:0051252;regulation of RNA metabolic process;0.00469613308979654!GO:0015631;tubulin binding;0.00471808589704155!GO:0006401;RNA catabolic process;0.00475566528002431!GO:0009967;positive regulation of signal transduction;0.00477316385545741!GO:0005791;rough endoplasmic reticulum;0.00498303201973197!GO:0007017;microtubule-based process;0.00523738086832571!GO:0030659;cytoplasmic vesicle membrane;0.00561748456713338!GO:0005774;vacuolar membrane;0.00567327505386257!GO:0019222;regulation of metabolic process;0.0056993836959588!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0057167601279814!GO:0008250;oligosaccharyl transferase complex;0.00583041552292388!GO:0045045;secretory pathway;0.00600761235944126!GO:0007093;mitotic cell cycle checkpoint;0.00602874454406644!GO:0006310;DNA recombination;0.0060553975056784!GO:0033673;negative regulation of kinase activity;0.00607849314576656!GO:0006469;negative regulation of protein kinase activity;0.00607849314576656!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00615074412340707!GO:0048487;beta-tubulin binding;0.0062530145358402!GO:0044262;cellular carbohydrate metabolic process;0.00625978948357313!GO:0050662;coenzyme binding;0.00628967005669873!GO:0006497;protein amino acid lipidation;0.00631954396648843!GO:0030660;Golgi-associated vesicle membrane;0.00638405479042612!GO:0030041;actin filament polymerization;0.00673122857242794!GO:0015036;disulfide oxidoreductase activity;0.00685607802768997!GO:0030663;COPI coated vesicle membrane;0.00686680502904689!GO:0030126;COPI vesicle coat;0.00686680502904689!GO:0006595;polyamine metabolic process;0.00701575916121575!GO:0006352;transcription initiation;0.00714170375967438!GO:0016272;prefoldin complex;0.00714270359867524!GO:0043086;negative regulation of catalytic activity;0.00717966967074549!GO:0003711;transcription elongation regulator activity;0.00720175194045527!GO:0031901;early endosome membrane;0.00724385482078478!GO:0051348;negative regulation of transferase activity;0.00732589251520478!GO:0016126;sterol biosynthetic process;0.00745120792460623!GO:0051052;regulation of DNA metabolic process;0.00760942923833454!GO:0031124;mRNA 3'-end processing;0.00765221519030402!GO:0030027;lamellipodium;0.00765221519030402!GO:0003690;double-stranded DNA binding;0.00774323761390265!GO:0032508;DNA duplex unwinding;0.00781399362786098!GO:0032392;DNA geometric change;0.00781399362786098!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00787733972161787!GO:0031902;late endosome membrane;0.00797565436905494!GO:0006891;intra-Golgi vesicle-mediated transport;0.00799939651978901!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00804808541749048!GO:0001726;ruffle;0.0084520140482265!GO:0006509;membrane protein ectodomain proteolysis;0.00855955936157653!GO:0033619;membrane protein proteolysis;0.00855955936157653!GO:0007162;negative regulation of cell adhesion;0.00892455782937687!GO:0022890;inorganic cation transmembrane transporter activity;0.00899794599895481!GO:0004518;nuclease activity;0.00901483859070687!GO:0051540;metal cluster binding;0.00910604266947585!GO:0051536;iron-sulfur cluster binding;0.00910604266947585!GO:0000339;RNA cap binding;0.00949257625616214!GO:0004576;oligosaccharyl transferase activity;0.00952033299584707!GO:0009892;negative regulation of metabolic process;0.00977634976972202!GO:0004003;ATP-dependent DNA helicase activity;0.0101463048442213!GO:0048660;regulation of smooth muscle cell proliferation;0.0102318165095344!GO:0006417;regulation of translation;0.0102877085483675!GO:0003746;translation elongation factor activity;0.0105459801080129!GO:0016741;transferase activity, transferring one-carbon groups;0.0107620994037322!GO:0043022;ribosome binding;0.0107720946525696!GO:0018196;peptidyl-asparagine modification;0.0110089314637228!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0110089314637228!GO:0005832;chaperonin-containing T-complex;0.0111026538603171!GO:0030118;clathrin coat;0.0111026538603171!GO:0005083;small GTPase regulator activity;0.0111481608875567!GO:0006268;DNA unwinding during replication;0.0113220589204675!GO:0051539;4 iron, 4 sulfur cluster binding;0.011333528683545!GO:0006405;RNA export from nucleus;0.0114822651255516!GO:0031625;ubiquitin protein ligase binding;0.0115429722949468!GO:0007242;intracellular signaling cascade;0.0117655951219035!GO:0000209;protein polyubiquitination;0.0118146078879708!GO:0032984;macromolecular complex disassembly;0.0118786910012831!GO:0043488;regulation of mRNA stability;0.0118786910012831!GO:0043487;regulation of RNA stability;0.0118786910012831!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0119800542119906!GO:0044437;vacuolar part;0.011980863219512!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0120906472620925!GO:0051101;regulation of DNA binding;0.0122173272165707!GO:0007034;vacuolar transport;0.0125195588846098!GO:0008180;signalosome;0.0125204180236288!GO:0044433;cytoplasmic vesicle part;0.0126427349843884!GO:0005637;nuclear inner membrane;0.0126427349843884!GO:0030695;GTPase regulator activity;0.0126829749592942!GO:0047485;protein N-terminus binding;0.0127766751805079!GO:0006144;purine base metabolic process;0.0127766751805079!GO:0006695;cholesterol biosynthetic process;0.012794806775578!GO:0050681;androgen receptor binding;0.0129335202703691!GO:0008361;regulation of cell size;0.0129972016038097!GO:0000922;spindle pole;0.0131266523681516!GO:0009112;nucleobase metabolic process;0.0131266523681516!GO:0006650;glycerophospholipid metabolic process;0.0132468966272361!GO:0004177;aminopeptidase activity;0.0136005677717011!GO:0030384;phosphoinositide metabolic process;0.0136238496452244!GO:0009116;nucleoside metabolic process;0.0137525876873712!GO:0005869;dynactin complex;0.0137525876873712!GO:0022408;negative regulation of cell-cell adhesion;0.0137525876873712!GO:0007021;tubulin folding;0.0137525876873712!GO:0005765;lysosomal membrane;0.0140737731216209!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0141571712532108!GO:0016049;cell growth;0.0142458332662977!GO:0006378;mRNA polyadenylation;0.0142458332662977!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0143901342128187!GO:0008168;methyltransferase activity;0.0144010669794049!GO:0007266;Rho protein signal transduction;0.0144369498785547!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0149086758523069!GO:0015002;heme-copper terminal oxidase activity;0.0149086758523069!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0149086758523069!GO:0004129;cytochrome-c oxidase activity;0.0149086758523069!GO:0005758;mitochondrial intermembrane space;0.0150205356077466!GO:0004527;exonuclease activity;0.0150709108238783!GO:0008234;cysteine-type peptidase activity;0.0153470322643866!GO:0030137;COPI-coated vesicle;0.0156201859370595!GO:0006611;protein export from nucleus;0.0157361809516729!GO:0030132;clathrin coat of coated pit;0.0163267025864078!GO:0030176;integral to endoplasmic reticulum membrane;0.0167893430643242!GO:0043241;protein complex disassembly;0.0169908566837389!GO:0051287;NAD binding;0.0171029527198423!GO:0042158;lipoprotein biosynthetic process;0.017326157879495!GO:0042168;heme metabolic process;0.0178279261721311!GO:0022415;viral reproductive process;0.0178615563861494!GO:0022411;cellular component disassembly;0.0180065812397351!GO:0008022;protein C-terminus binding;0.0180664989003283!GO:0043284;biopolymer biosynthetic process;0.0180664989003283!GO:0006740;NADPH regeneration;0.0180953814212947!GO:0006098;pentose-phosphate shunt;0.0180953814212947!GO:0051098;regulation of binding;0.0180953814212947!GO:0000096;sulfur amino acid metabolic process;0.0186986266290792!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0187533088977862!GO:0043624;cellular protein complex disassembly;0.018800082052363!GO:0012506;vesicle membrane;0.0191292434791438!GO:0007059;chromosome segregation;0.0199877061901034!GO:0000287;magnesium ion binding;0.0200676681245188!GO:0003756;protein disulfide isomerase activity;0.0200676681245188!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0200676681245188!GO:0030032;lamellipodium biogenesis;0.0200676681245188!GO:0005876;spindle microtubule;0.0200878941475661!GO:0005669;transcription factor TFIID complex;0.0202129775834968!GO:0030833;regulation of actin filament polymerization;0.0202389714143461!GO:0006376;mRNA splice site selection;0.0208646077814038!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0208646077814038!GO:0006506;GPI anchor biosynthetic process;0.0208679978699423!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0210025283458191!GO:0016251;general RNA polymerase II transcription factor activity;0.0214398202602357!GO:0051338;regulation of transferase activity;0.0217496648887688!GO:0006778;porphyrin metabolic process;0.0217496648887688!GO:0033013;tetrapyrrole metabolic process;0.0217496648887688!GO:0032200;telomere organization and biogenesis;0.0218879912601343!GO:0000723;telomere maintenance;0.0218879912601343!GO:0006505;GPI anchor metabolic process;0.0220029802040991!GO:0007040;lysosome organization and biogenesis;0.0220387518469059!GO:0000910;cytokinesis;0.0220732774793601!GO:0008154;actin polymerization and/or depolymerization;0.0220732774793601!GO:0031123;RNA 3'-end processing;0.0221992576850485!GO:0006284;base-excision repair;0.0222269095126928!GO:0006220;pyrimidine nucleotide metabolic process;0.0228775103903675!GO:0004197;cysteine-type endopeptidase activity;0.0229203536031494!GO:0031529;ruffle organization and biogenesis;0.0235221960763308!GO:0051128;regulation of cellular component organization and biogenesis;0.023530605442944!GO:0006643;membrane lipid metabolic process;0.0238171245255573!GO:0007033;vacuole organization and biogenesis;0.0240352006594001!GO:0016301;kinase activity;0.0242371907534598!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0244513992515473!GO:0001953;negative regulation of cell-matrix adhesion;0.0244513992515473!GO:0006892;post-Golgi vesicle-mediated transport;0.0244513992515473!GO:0001952;regulation of cell-matrix adhesion;0.0249046530208985!GO:0008610;lipid biosynthetic process;0.0249046530208985!GO:0042770;DNA damage response, signal transduction;0.0251150508499494!GO:0009303;rRNA transcription;0.0253176388306995!GO:0006118;electron transport;0.0254402252906329!GO:0035267;NuA4 histone acetyltransferase complex;0.0254889230832888!GO:0007346;regulation of progression through mitotic cell cycle;0.025816198007799!GO:0004674;protein serine/threonine kinase activity;0.0262269511015302!GO:0035035;histone acetyltransferase binding;0.0264465314108341!GO:0022406;membrane docking;0.0264465314108341!GO:0048278;vesicle docking;0.0264465314108341!GO:0048659;smooth muscle cell proliferation;0.0265197536481126!GO:0042585;germinal vesicle;0.0265784893839193!GO:0030518;steroid hormone receptor signaling pathway;0.0267574156616822!GO:0005092;GDP-dissociation inhibitor activity;0.0268790408402772!GO:0008538;proteasome activator activity;0.0272381408351!GO:0048518;positive regulation of biological process;0.0272691571880811!GO:0009451;RNA modification;0.0272978849155591!GO:0030496;midbody;0.027444272018449!GO:0005099;Ras GTPase activator activity;0.0276026287479804!GO:0001558;regulation of cell growth;0.0277871807921991!GO:0009889;regulation of biosynthetic process;0.0283578396974563!GO:0043549;regulation of kinase activity;0.0283841511564937!GO:0031970;organelle envelope lumen;0.0290232396429146!GO:0043189;H4/H2A histone acetyltransferase complex;0.0291665038727041!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0292332249475718!GO:0031326;regulation of cellular biosynthetic process;0.0294217308645904!GO:0030119;AP-type membrane coat adaptor complex;0.0294645531229452!GO:0045941;positive regulation of transcription;0.0312522537101171!GO:0000152;nuclear ubiquitin ligase complex;0.0312736548503617!GO:0006082;organic acid metabolic process;0.0316499842447223!GO:0007041;lysosomal transport;0.0322698207178418!GO:0003779;actin binding;0.0322698207178418!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0322698207178418!GO:0016601;Rac protein signal transduction;0.0322698207178418!GO:0019752;carboxylic acid metabolic process;0.0333461301634673!GO:0048144;fibroblast proliferation;0.0334806994541949!GO:0048145;regulation of fibroblast proliferation;0.0334806994541949!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0339883990712447!GO:0030433;ER-associated protein catabolic process;0.0344697382828282!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0344697382828282!GO:0006520;amino acid metabolic process;0.0348284354677226!GO:0005784;translocon complex;0.0350903027820061!GO:0006275;regulation of DNA replication;0.0359480510860828!GO:0016408;C-acyltransferase activity;0.0362423245997966!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0366650414536564!GO:0030508;thiol-disulfide exchange intermediate activity;0.0368112055067049!GO:0045859;regulation of protein kinase activity;0.0370159452934972!GO:0016791;phosphoric monoester hydrolase activity;0.037219092100447!GO:0031371;ubiquitin conjugating enzyme complex;0.0382522593271968!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0384020775362372!GO:0008243;plasminogen activator activity;0.0385407002977257!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0390611417112594!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.039602337716804!GO:0009966;regulation of signal transduction;0.0398912597968304!GO:0042393;histone binding;0.0402255527436578!GO:0005680;anaphase-promoting complex;0.0403473516607476!GO:0043596;nuclear replication fork;0.0405490007230602!GO:0006904;vesicle docking during exocytosis;0.0409074031011107!GO:0006807;nitrogen compound metabolic process;0.0425649939830921!GO:0008320;protein transmembrane transporter activity;0.0425649939830921!GO:0008287;protein serine/threonine phosphatase complex;0.0426007472812866!GO:0048146;positive regulation of fibroblast proliferation;0.0426573169038909!GO:0006007;glucose catabolic process;0.0426573169038909!GO:0006360;transcription from RNA polymerase I promoter;0.042679566474567!GO:0004532;exoribonuclease activity;0.0429382396078806!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0429382396078806!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0429483295717468!GO:0045893;positive regulation of transcription, DNA-dependent;0.0429693755334327!GO:0030131;clathrin adaptor complex;0.0433402396807427!GO:0016407;acetyltransferase activity;0.0437178440128428!GO:0030911;TPR domain binding;0.0445668805961525!GO:0051059;NF-kappaB binding;0.0451872726660767!GO:0000781;chromosome, telomeric region;0.0452766616566685!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0452766616566685!GO:0016311;dephosphorylation;0.045770863191146!GO:0046519;sphingoid metabolic process;0.0458758089220729!GO:0019904;protein domain specific binding;0.0459871808229981!GO:0006270;DNA replication initiation;0.0462890563942385!GO:0004448;isocitrate dehydrogenase activity;0.0462954981792063!GO:0006338;chromatin remodeling;0.0462970677039502!GO:0030145;manganese ion binding;0.0483019068823415!GO:0006354;RNA elongation;0.0484139085374775!GO:0045879;negative regulation of smoothened signaling pathway;0.04903773216281!GO:0000178;exosome (RNase complex);0.0492760592552312!GO:0043433;negative regulation of transcription factor activity;0.0492809323384006!GO:0004860;protein kinase inhibitor activity;0.0492809323384006!GO:0019206;nucleoside kinase activity;0.049671349901839 | |||
|sample_id=11266 | |sample_id=11266 | ||
|sample_note=Originally library704 tailing failed, the remaining sample is being rerun | |sample_note=Originally library704 tailing failed, the remaining sample is being rerun | ||
| Line 76: | Line 105: | ||
|sample_tissue=internal thoracic artery | |sample_tissue=internal thoracic artery | ||
|top_motifs=SOX{8,9,10}:1.83831374469;FOX{I1,J2}:1.80478927114;NFATC1..3:1.50544297905;RXR{A,B,G}:1.43209003981;FOXD3:1.28237301049;PAX6:1.12324759263;IKZF2:1.07299841269;ADNP_IRX_SIX_ZHX:1.04805352813;HAND1,2:1.04312075593;ELF1,2,4:1.03599904256;TLX1..3_NFIC{dimer}:1.02077765771;AR:1.01242912112;ALX1:0.933711729;HBP1_HMGB_SSRP1_UBTF:0.904599461158;FOXL1:0.802392567767;SOX2:0.771466073526;LEF1_TCF7_TCF7L1,2:0.768246784883;bHLH_family:0.756342501191;PAX8:0.737388349774;POU3F1..4:0.735959908202;TP53:0.72008697762;ETS1,2:0.683677004155;NR3C1:0.648944181723;IKZF1:0.634530218574;GATA6:0.629719324998;NR5A1,2:0.622918191885;NKX2-2,8:0.587178955307;ARID5B:0.57371843325;NFE2L1:0.560379016239;RBPJ:0.559390161393;SPZ1:0.552347415997;FOXQ1:0.548326680769;SPIB:0.532266817953;MYB:0.525875433306;POU1F1:0.511915030959;E2F1..5:0.483316803954;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.474800364733;SOX5:0.468313535977;TFAP4:0.452537943497;LHX3,4:0.446342222165;HMGA1,2:0.444200536178;PBX1:0.428784456955;TFDP1:0.420868754465;SMAD1..7,9:0.418763529142;ZFP161:0.396337767231;HES1:0.393448926482;SOX17:0.388415742283;PITX1..3:0.385888368657;PAX1,9:0.373378667372;GFI1B:0.347939027537;NRF1:0.316858665313;DMAP1_NCOR{1,2}_SMARC:0.314496231499;TEF:0.29772979826;FOXA2:0.295741674296;GZF1:0.277519920893;TEAD1:0.26261918685;GATA4:0.24571875084;PAX5:0.234349339286;ZNF143:0.221641432327;TFAP2{A,C}:0.220407778336;NKX3-2:0.197142806142;STAT2,4,6:0.188983327922;GFI1:0.182243113371;ZNF148:0.181398227832;NFIX:0.174886752523;PAX4:0.149053402782;NFE2:0.141753887898;NFE2L2:0.132154280317;BACH2:0.11765685704;CRX:0.111241837521;EVI1:0.105829265263;NKX2-3_NKX2-5:0.0968836579199;FOS_FOS{B,L1}_JUN{B,D}:0.0923035499938;FOXM1:0.0919835047584;ZBTB6:0.080641959784;XCPE1{core}:0.0794744719409;ONECUT1,2:0.0747059120989;REST:0.0710321496967;HIC1:0.0695745378719;HNF4A_NR2F1,2:0.0628893012972;NHLH1,2:0.0611207382133;ZNF238:0.0524379106062;SPI1:0.0444490016762;CDC5L:0.0405518554621;T:0.0335268023997;RORA:0.0323240907395;YY1:0.0113767660296;NFY{A,B,C}:0.0111679319434;UFEwm:0.00380889932107;NANOG:-0.00397597231745;PRDM1:-0.0141517397866;FOXP1:-0.0155771399886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0211816344678;MYOD1:-0.030582667111;HOX{A5,B5}:-0.0395939159118;EN1,2:-0.077585916171;MTF1:-0.0934314103905;FOSL2:-0.0968790193419;HNF1A:-0.10210064508;MTE{core}:-0.104874321996;TGIF1:-0.110597027341;PRRX1,2:-0.126379875441;LMO2:-0.142280529427;AHR_ARNT_ARNT2:-0.146564264264;DBP:-0.166774646098;FOXN1:-0.180389992472;KLF4:-0.181606475193;SP1:-0.183599480749;CUX2:-0.18667415925;POU6F1:-0.192277100266;MED-1{core}:-0.201468068502;TLX2:-0.207508536487;MEF2{A,B,C,D}:-0.215629470375;NFKB1_REL_RELA:-0.216642224612;MYBL2:-0.21955930354;GCM1,2:-0.258967938905;NANOG{mouse}:-0.274360435058;TAL1_TCF{3,4,12}:-0.275955833132;GTF2I:-0.275986361695;ZIC1..3:-0.282824706892;MAZ:-0.291544321364;RFX1:-0.301581038722;AIRE:-0.303345482448;STAT1,3:-0.303458136666;PAX2:-0.31029802182;TBP:-0.316739880439;HLF:-0.354253095174;TFAP2B:-0.364616441152;RREB1:-0.404912351996;PPARG:-0.407925550873;SNAI1..3:-0.411017159406;POU5F1:-0.417048535182;SRF:-0.419916801046;ZNF423:-0.428131581393;VSX1,2:-0.435723428906;HOXA9_MEIS1:-0.438363539053;ELK1,4_GABP{A,B1}:-0.439829571499;MZF1:-0.440120960154;ATF2:-0.440488193955;ZNF384:-0.460145949809;OCT4_SOX2{dimer}:-0.468961294008;CREB1:-0.470092004731;TFCP2:-0.471210641311;PAX3,7:-0.47166343376;STAT5{A,B}:-0.47713710725;GTF2A1,2:-0.483712867184;IRF1,2:-0.491834865322;FOX{D1,D2}:-0.496491215049;RUNX1..3:-0.522824326304;HIF1A:-0.530191939402;ATF6:-0.532301501345;ESR1:-0.533048063547;BPTF:-0.537873435708;HMX1:-0.538576747823;CEBPA,B_DDIT3:-0.544009295598;ZBTB16:-0.576752539288;XBP1:-0.577371383903;EGR1..3:-0.581533725141;MAFB:-0.603490050265;EBF1:-0.610750933105;HSF1,2:-0.618758752902;GLI1..3:-0.64125045368;ZEB1:-0.648875735934;IRF7:-0.668442672161;NFIL3:-0.68996621098;PATZ1:-0.69048311574;TBX4,5:-0.699717320544;JUN:-0.700259027909;RXRA_VDR{dimer}:-0.715600225299;FOXO1,3,4:-0.716240847865;POU2F1..3:-0.734787083228;ATF5_CREB3:-0.736455332021;EP300:-0.740081777831;ESRRA:-0.749257189269;CDX1,2,4:-0.755215766781;BREu{core}:-0.755267492442;NKX2-1,4:-0.758738640856;FOXP3:-0.765758552177;ALX4:-0.770340051484;SREBF1,2:-0.784208349557;ATF4:-0.80264619915;HOX{A4,D4}:-0.836935955044;NKX3-1:-0.837252433883;TOPORS:-0.87594738114;RFX2..5_RFXANK_RFXAP:-0.876230522963;PDX1:-0.889818188675;FOX{F1,F2,J1}:-0.893418346366;MYFfamily:-0.896296844606;NR1H4:-0.942960813548;NR6A1:-1.00990986834;NKX6-1,2:-1.01361372026;HOX{A6,A7,B6,B7}:-1.26977998967 | |top_motifs=SOX{8,9,10}:1.83831374469;FOX{I1,J2}:1.80478927114;NFATC1..3:1.50544297905;RXR{A,B,G}:1.43209003981;FOXD3:1.28237301049;PAX6:1.12324759263;IKZF2:1.07299841269;ADNP_IRX_SIX_ZHX:1.04805352813;HAND1,2:1.04312075593;ELF1,2,4:1.03599904256;TLX1..3_NFIC{dimer}:1.02077765771;AR:1.01242912112;ALX1:0.933711729;HBP1_HMGB_SSRP1_UBTF:0.904599461158;FOXL1:0.802392567767;SOX2:0.771466073526;LEF1_TCF7_TCF7L1,2:0.768246784883;bHLH_family:0.756342501191;PAX8:0.737388349774;POU3F1..4:0.735959908202;TP53:0.72008697762;ETS1,2:0.683677004155;NR3C1:0.648944181723;IKZF1:0.634530218574;GATA6:0.629719324998;NR5A1,2:0.622918191885;NKX2-2,8:0.587178955307;ARID5B:0.57371843325;NFE2L1:0.560379016239;RBPJ:0.559390161393;SPZ1:0.552347415997;FOXQ1:0.548326680769;SPIB:0.532266817953;MYB:0.525875433306;POU1F1:0.511915030959;E2F1..5:0.483316803954;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.474800364733;SOX5:0.468313535977;TFAP4:0.452537943497;LHX3,4:0.446342222165;HMGA1,2:0.444200536178;PBX1:0.428784456955;TFDP1:0.420868754465;SMAD1..7,9:0.418763529142;ZFP161:0.396337767231;HES1:0.393448926482;SOX17:0.388415742283;PITX1..3:0.385888368657;PAX1,9:0.373378667372;GFI1B:0.347939027537;NRF1:0.316858665313;DMAP1_NCOR{1,2}_SMARC:0.314496231499;TEF:0.29772979826;FOXA2:0.295741674296;GZF1:0.277519920893;TEAD1:0.26261918685;GATA4:0.24571875084;PAX5:0.234349339286;ZNF143:0.221641432327;TFAP2{A,C}:0.220407778336;NKX3-2:0.197142806142;STAT2,4,6:0.188983327922;GFI1:0.182243113371;ZNF148:0.181398227832;NFIX:0.174886752523;PAX4:0.149053402782;NFE2:0.141753887898;NFE2L2:0.132154280317;BACH2:0.11765685704;CRX:0.111241837521;EVI1:0.105829265263;NKX2-3_NKX2-5:0.0968836579199;FOS_FOS{B,L1}_JUN{B,D}:0.0923035499938;FOXM1:0.0919835047584;ZBTB6:0.080641959784;XCPE1{core}:0.0794744719409;ONECUT1,2:0.0747059120989;REST:0.0710321496967;HIC1:0.0695745378719;HNF4A_NR2F1,2:0.0628893012972;NHLH1,2:0.0611207382133;ZNF238:0.0524379106062;SPI1:0.0444490016762;CDC5L:0.0405518554621;T:0.0335268023997;RORA:0.0323240907395;YY1:0.0113767660296;NFY{A,B,C}:0.0111679319434;UFEwm:0.00380889932107;NANOG:-0.00397597231745;PRDM1:-0.0141517397866;FOXP1:-0.0155771399886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0211816344678;MYOD1:-0.030582667111;HOX{A5,B5}:-0.0395939159118;EN1,2:-0.077585916171;MTF1:-0.0934314103905;FOSL2:-0.0968790193419;HNF1A:-0.10210064508;MTE{core}:-0.104874321996;TGIF1:-0.110597027341;PRRX1,2:-0.126379875441;LMO2:-0.142280529427;AHR_ARNT_ARNT2:-0.146564264264;DBP:-0.166774646098;FOXN1:-0.180389992472;KLF4:-0.181606475193;SP1:-0.183599480749;CUX2:-0.18667415925;POU6F1:-0.192277100266;MED-1{core}:-0.201468068502;TLX2:-0.207508536487;MEF2{A,B,C,D}:-0.215629470375;NFKB1_REL_RELA:-0.216642224612;MYBL2:-0.21955930354;GCM1,2:-0.258967938905;NANOG{mouse}:-0.274360435058;TAL1_TCF{3,4,12}:-0.275955833132;GTF2I:-0.275986361695;ZIC1..3:-0.282824706892;MAZ:-0.291544321364;RFX1:-0.301581038722;AIRE:-0.303345482448;STAT1,3:-0.303458136666;PAX2:-0.31029802182;TBP:-0.316739880439;HLF:-0.354253095174;TFAP2B:-0.364616441152;RREB1:-0.404912351996;PPARG:-0.407925550873;SNAI1..3:-0.411017159406;POU5F1:-0.417048535182;SRF:-0.419916801046;ZNF423:-0.428131581393;VSX1,2:-0.435723428906;HOXA9_MEIS1:-0.438363539053;ELK1,4_GABP{A,B1}:-0.439829571499;MZF1:-0.440120960154;ATF2:-0.440488193955;ZNF384:-0.460145949809;OCT4_SOX2{dimer}:-0.468961294008;CREB1:-0.470092004731;TFCP2:-0.471210641311;PAX3,7:-0.47166343376;STAT5{A,B}:-0.47713710725;GTF2A1,2:-0.483712867184;IRF1,2:-0.491834865322;FOX{D1,D2}:-0.496491215049;RUNX1..3:-0.522824326304;HIF1A:-0.530191939402;ATF6:-0.532301501345;ESR1:-0.533048063547;BPTF:-0.537873435708;HMX1:-0.538576747823;CEBPA,B_DDIT3:-0.544009295598;ZBTB16:-0.576752539288;XBP1:-0.577371383903;EGR1..3:-0.581533725141;MAFB:-0.603490050265;EBF1:-0.610750933105;HSF1,2:-0.618758752902;GLI1..3:-0.64125045368;ZEB1:-0.648875735934;IRF7:-0.668442672161;NFIL3:-0.68996621098;PATZ1:-0.69048311574;TBX4,5:-0.699717320544;JUN:-0.700259027909;RXRA_VDR{dimer}:-0.715600225299;FOXO1,3,4:-0.716240847865;POU2F1..3:-0.734787083228;ATF5_CREB3:-0.736455332021;EP300:-0.740081777831;ESRRA:-0.749257189269;CDX1,2,4:-0.755215766781;BREu{core}:-0.755267492442;NKX2-1,4:-0.758738640856;FOXP3:-0.765758552177;ALX4:-0.770340051484;SREBF1,2:-0.784208349557;ATF4:-0.80264619915;HOX{A4,D4}:-0.836935955044;NKX3-1:-0.837252433883;TOPORS:-0.87594738114;RFX2..5_RFXANK_RFXAP:-0.876230522963;PDX1:-0.889818188675;FOX{F1,F2,J1}:-0.893418346366;MYFfamily:-0.896296844606;NR1H4:-0.942960813548;NR6A1:-1.00990986834;NKX6-1,2:-1.01361372026;HOX{A6,A7,B6,B7}:-1.26977998967 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11266-116G6;search_select_hide=table117:FF:11266-116G6 | |||
}} | }} | ||
Latest revision as of 16:29, 3 June 2020
| Name: | Endothelial Cells - Thoracic, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11926 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11926
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11926
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0344 |
| 10 | 10 | 0.837 |
| 100 | 100 | 0.148 |
| 101 | 101 | 0.179 |
| 102 | 102 | 0.825 |
| 103 | 103 | 0.224 |
| 104 | 104 | 0.74 |
| 105 | 105 | 0.556 |
| 106 | 106 | 0.704 |
| 107 | 107 | 0.118 |
| 108 | 108 | 0.879 |
| 109 | 109 | 0.0772 |
| 11 | 11 | 0.125 |
| 110 | 110 | 0.00124 |
| 111 | 111 | 0.0448 |
| 112 | 112 | 0.49 |
| 113 | 113 | 0.672 |
| 114 | 114 | 0.209 |
| 115 | 115 | 0.911 |
| 116 | 116 | 0.282 |
| 117 | 117 | 0.446 |
| 118 | 118 | 0.0459 |
| 119 | 119 | 0.773 |
| 12 | 12 | 0.727 |
| 120 | 120 | 0.0122 |
| 121 | 121 | 0.285 |
| 122 | 122 | 0.527 |
| 123 | 123 | 0.145 |
| 124 | 124 | 0.62 |
| 125 | 125 | 0.949 |
| 126 | 126 | 0.839 |
| 127 | 127 | 0.581 |
| 128 | 128 | 0.422 |
| 129 | 129 | 0.211 |
| 13 | 13 | 0.341 |
| 130 | 130 | 0.821 |
| 131 | 131 | 0.287 |
| 132 | 132 | 0.314 |
| 133 | 133 | 0.877 |
| 134 | 134 | 0.748 |
| 135 | 135 | 0.414 |
| 136 | 136 | 0.191 |
| 137 | 137 | 0.503 |
| 138 | 138 | 0.699 |
| 139 | 139 | 0.831 |
| 14 | 14 | 0.135 |
| 140 | 140 | 0.862 |
| 141 | 141 | 0.0392 |
| 142 | 142 | 0.0617 |
| 143 | 143 | 0.521 |
| 144 | 144 | 0.298 |
| 145 | 145 | 0.285 |
| 146 | 146 | 0.925 |
| 147 | 147 | 0.387 |
| 148 | 148 | 0.321 |
| 149 | 149 | 0.0536 |
| 15 | 15 | 0.652 |
| 150 | 150 | 0.588 |
| 151 | 151 | 0.78 |
| 152 | 152 | 0.0744 |
| 153 | 153 | 0.273 |
| 154 | 154 | 0.465 |
| 155 | 155 | 0.31 |
| 156 | 156 | 0.187 |
| 157 | 157 | 0.141 |
| 158 | 158 | 0.231 |
| 159 | 159 | 0.29 |
| 16 | 16 | 0.946 |
| 160 | 160 | 0.0851 |
| 161 | 161 | 0.496 |
| 162 | 162 | 0.258 |
| 163 | 163 | 0.859 |
| 164 | 164 | 0.225 |
| 165 | 165 | 0.968 |
| 166 | 166 | 0.346 |
| 167 | 167 | 0.463 |
| 168 | 168 | 0.242 |
| 169 | 169 | 0.0165 |
| 17 | 17 | 0.381 |
| 18 | 18 | 0.839 |
| 19 | 19 | 0.197 |
| 2 | 2 | 0.922 |
| 20 | 20 | 0.154 |
| 21 | 21 | 0.779 |
| 22 | 22 | 0.651 |
| 23 | 23 | 0.211 |
| 24 | 24 | 0.221 |
| 25 | 25 | 1 |
| 26 | 26 | 0.574 |
| 27 | 27 | 0.556 |
| 28 | 28 | 0.38 |
| 29 | 29 | 0.783 |
| 3 | 3 | 0.76 |
| 30 | 30 | 0.469 |
| 31 | 31 | 0.694 |
| 32 | 32 | 0.422 |
| 33 | 33 | 0.129 |
| 34 | 34 | 0.167 |
| 35 | 35 | 0.427 |
| 36 | 36 | 0.0189 |
| 37 | 37 | 0.175 |
| 38 | 38 | 0.0907 |
| 39 | 39 | 0.237 |
| 4 | 4 | 0.834 |
| 40 | 40 | 0.0149 |
| 41 | 41 | 0.00484 |
| 42 | 42 | 0.202 |
| 43 | 43 | 0.959 |
| 44 | 44 | 0.816 |
| 45 | 45 | 0.863 |
| 46 | 46 | 0.319 |
| 47 | 47 | 0.193 |
| 48 | 48 | 0.144 |
| 49 | 49 | 0.91 |
| 5 | 5 | 0.648 |
| 50 | 50 | 0.947 |
| 51 | 51 | 0.551 |
| 52 | 52 | 0.296 |
| 53 | 53 | 0.753 |
| 54 | 54 | 0.933 |
| 55 | 55 | 0.805 |
| 56 | 56 | 0.676 |
| 57 | 57 | 0.185 |
| 58 | 58 | 0.601 |
| 59 | 59 | 0.358 |
| 6 | 6 | 0.59 |
| 60 | 60 | 0.514 |
| 61 | 61 | 0.654 |
| 62 | 62 | 0.574 |
| 63 | 63 | 0.769 |
| 64 | 64 | 0.916 |
| 65 | 65 | 0.757 |
| 66 | 66 | 0.0625 |
| 67 | 67 | 0.441 |
| 68 | 68 | 0.195 |
| 69 | 69 | 0.938 |
| 7 | 7 | 0.192 |
| 70 | 70 | 0.91 |
| 71 | 71 | 0.458 |
| 72 | 72 | 0.678 |
| 73 | 73 | 0.0117 |
| 74 | 74 | 0.955 |
| 75 | 75 | 0.113 |
| 76 | 76 | 0.563 |
| 77 | 77 | 0.191 |
| 78 | 78 | 0.0916 |
| 79 | 79 | 0.699 |
| 8 | 8 | 0.00713 |
| 80 | 80 | 0.355 |
| 81 | 81 | 0.576 |
| 82 | 82 | 0.64 |
| 83 | 83 | 0.813 |
| 84 | 84 | 0.308 |
| 85 | 85 | 0.746 |
| 86 | 86 | 0.448 |
| 87 | 87 | 0.267 |
| 88 | 88 | 0.856 |
| 89 | 89 | 0.95 |
| 9 | 9 | 0.432 |
| 90 | 90 | 0.476 |
| 91 | 91 | 0.596 |
| 92 | 92 | 0.36 |
| 93 | 93 | 0.769 |
| 94 | 94 | 0.966 |
| 95 | 95 | 0.073 |
| 96 | 96 | 0.173 |
| 97 | 97 | 0.344 |
| 98 | 98 | 0.329 |
| 99 | 99 | 0.00976 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11926
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)
0002545 (thoracic aorta endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0005800 (segment of aorta)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001515 (thoracic aorta)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)
0000051 (human thoracic endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
