FF:10812-111B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005916 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007971;DRR008843;DRZ000268;DRZ001653;DRZ011618;DRZ013003 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0005409 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100003 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100003 | |fonse_cell_line=FF:0100003 | ||
|fonse_cell_line_closure=FF:0100003 | |fonse_cell_line_closure=FF:0100003 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520intestinal%2520epithelial%2520cell%2520line%253aFHs%252074%2520Int.CNhs11950.10812-111B2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520intestinal%2520epithelial%2520cell%2520line%253aFHs%252074%2520Int.CNhs11950.10812-111B2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520intestinal%2520epithelial%2520cell%2520line%253aFHs%252074%2520Int.CNhs11950.10812-111B2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/normal%2520intestinal%2520epithelial%2520cell%2520line%253aFHs%252074%2520Int.CNhs11950.10812-111B2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/normal%2520intestinal%2520epithelial%2520cell%2520line%253aFHs%252074%2520Int.CNhs11950.10812-111B2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10812-111B2 | |id=FF:10812-111B2 | ||
|is_a=CL:0002563;;EFO:0002091;;FF: | |is_a=CL:0002563;;EFO:0002091;;FF:0000210;;FF:0100003 | ||
|is_obsolete= | |||
|library_id=CNhs11950 | |||
|library_id_phase_based=2:CNhs11950 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10812 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10812 | |||
|name=normal intestinal epithelial cell line:FHs 74 Int | |name=normal intestinal epithelial cell line:FHs 74 Int | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11950,LSID836,release011,COMPLETED | |profile_hcage=CNhs11950,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.173663242113725,0,0,0,0,0.537015182583472,0,0.331426406909769,0.415131199382379,0,0,0,0.0238701302877342,0,0,0,0,0,0,0,0,0,0.544010202321431,0,0,0,0,0,0.399485732631167,0,0,0.150058732031335,0,0,0,0,0,0,0,0,0,0,0,0,0.416135888004981,0.116024799788948,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.110504925889745,0,0,0.0186811725758511,0,0,0,0,0,0,0,0,0.20749728713235,0,0,0,0,0,0,0,0,0,0.058012399894474,0,0.116024799788948,0,0,0,0.036903221813954,0.058012399894474,0,0,-0.126485564966356,0.057709867541234,0,0.452931716890291,0,0.347326484227451,0.249291132989745,0.43718558744977,0,0,0,0,0,0,0.116024799788948,0,0,0,0,0,0,0,0,0,0,0.172533676314642,0.116024799788948,0,0,0.326236655590575,0.654839141677569,0,0,0.116024799788948,0,0,0 | |||
|repeat_enrich_byname=0,0.116024799788948,0,0,0.249291132989745,0,0.347326484227451,0.20749728713235,0,0,0.116024799788948,0,0,0.452931716890291,0,0,-0.0396815881532145,0.10591596991573,-0.191070896941811,-0.143515142523472,0.103748643566175,0,-0.0271499863506995,0,0.116024799788948,0,0,0,0,0,0,0,0.324811849937726,0,-0.0504125515893149,0,0,0.116024799788948,0,0.073071135062791,-0.189447431109459,0,0.199590831653164,0.278982223150083,0,0,0,0,0.157890769469875,0,0.0866178033386093,-0.0827201683234173,0.1817195726153,0.298398569768288,0.069220140896568,0,0,0,0.142725038031426,0.254905720060534,0,0,-0.005755051962926,-0.181349618560659,0,0,0.760280994949696,0,-0.204038870947868,0.467596199952096,0,0,0,0,0,0,0,0,0,0.116024799788948,0,0,0,0.104267576639212,0.076342564039138,0,0,0.116024799788948,0.0753860789717907,-0.183924861859783,0,-0.0398509694571393,-0.0902708341463695,-0.0677206914866613,-0.186132128211609,-0.226861967976942,0,0.0449367572175382,0.135744149403945,-0.309960051704718,-0.269284769633417,0.305529867519153,0.0175155675825026,0,0.036903221813954,-0.248458088639806,-0.0767988552297171,0.0801897543656462,-0.0356882073890186,-0.378629153074673,-0.0763885430252629,0,0,0,0.140309160726995,0,0,0.753846921639006,-0.0507383442913035,0.085243252757091,0.0564166388392313,0.0923895969797975,-0.0979461442200875,-0.0395325284566706,-0.00450473600630363,0.0257807742241703,0.123928279635856,0.0687902179432249,0,-0.0258334664805102,0.0094864560033921,0.0668672481051087,-0.00703763407539659,0,-0.0806463010928738,0.139153026054982,0,0.00979629299700649,-0.0178622316977335,0,0.196165477441462,0.0909993426123337,0,0,0.036630381686914,0,0,-0.192951267846435,-0.0865604261398752,-0.0253582744231949,0,-0.0854995777368485,0.0422872936045467,-0.0283788101154837,0,-0.203592425862374,0.137005424352803,0,-0.0434856255979741,0,-0.0347699687914013,-0.121912085768545,0.114983255057732,0.115419735082468,-0.0584468268118252,-0.00722675403799011,-0.0386040782665801,-0.126485564966356,0.58511461959701,-0.0420478280239951,2.49806010622126,-0.0321723775161435,0.00505032678476558,0.442711817069544,-0.0400420494604501,0.133502473637259,0,0.141321096798016,0,-0.117033687189027,0,-0.239613883131118,-0.087502034582949,-0.0919628903532348,0.1410185256694,0,-0.0968918924867086,-0.0172842527015762,0.0274442982154064,0.010630948638217,0,0,-0.0343422835456913,0.136003328380703,-0.095625628075641,0.060530604120378,0,0.115372789574768,0,0,-0.145603252499037,0.111850446463063,0,-0.0669751800665709,0.0311493333223561,-0.10677241229607,5.37263540140165e-05,0.283015321810197,0,0.187998956900561,0,0.452931716890291,-0.0681135233438247,0.0403989168220529,0.103461855779108,-0.253326341486756,0,0.796405905659294,0.004968435056896,0,0.225803394752931,0,0.418478380736412,0,0,0.009796683654704,-0.0388784541316732,0,0,0,0,0.116024799788948,0,0,0,0,0,0,0.0440812585986534,-0.2388085304275,0,-0.0429315504906844,0,0.116024799788948,0,0.283015321810197,0,0,0,0.497443628899224,0.327133174701735,0.199887408080406,-0.0069926158874722,0,0,0,0,0.0672919192567227,-0.203236562094724,0,0.21546377772982,0,0,0,0,0.196874332020986,0,0,0.058012399894474,0.058012399894474,0.0582943427352841,-0.0329095252169225,0,0,0,0.87437117489954,0,0,0.116024799788948,0,-0.18541053736829,0,0,0.106540759504832,0,-0.109618645330462,-0.0815818795468414,0,-0.011500163121197,0.433801036069137,0.453520465274797,0,0.116024799788948,0.141984028928219,0,0,-0.0025263859202509,0,0,0,0,0,0,0,0,0,0.133011971827696,0.0492949262270476,0,0,0,0,0,0,0,0,0,0,0.175416295601167,0.115273230473839,0.143437616615242,0,0,0,0,0,0,0.079642620487272,-0.0157283265445263,0,0,0.0157225645527336,0,0,0.20749728713235,0,0,-0.0680947789451352,0,0,0,0,0,0.110504925889745,0,0,0,0.347326484227451,0.54724707695456,0,0,0.331426406909769,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00729428624649966,0.472109228879118,0,0,0,0,0,0,0,0.222610330693134,0,0.283015321810197,0,0,0.00214042607997088,0,0,0,0.242530099438295,0,0.537015182583472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226465858445145,0,0,0,0.372605436314565,0,0.218694787968763,-0.0200070358502563,0,0,0.0362789176040611,0,0,0,0,0,0,0.110167236876571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116024799788948,0,0,0,0,0,0,0.0423807160812602,0,0,0,0,0,0,0,0.399485732631167,0,0,0.023991989988422,0,0,0,0,0.116024799788948,0,0.064493617359078,0.47955015488144,0.0391180840868171,0,0,0,0.04936307108372,0,0,0,0,0.216237934391296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544010202321431,0,0,0,0,0,0,0,0,0,0,0.141507660905099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116024799788948,0,0,0,0,0,0,0,-0.0340113632754165,0.116024799788948,0.058012399894474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267308015958813,0,0,0,0.190244931061063,0,0,0,0,0,0,0.116024799788948,0,0.497443628899224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291904345719464,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0678027245498939,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116024799788948,0.172741137222029,0,0,0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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=12.10356 | |rna_weight_ug=12.10356 | ||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=cell lines | |||
|sample_cell_catalog=JCRB9076 | |sample_cell_catalog=JCRB9076 | ||
|sample_cell_line=FHs 74 Int | |sample_cell_line=FHs 74 Int | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.80382513026876e-212!GO:0005737;cytoplasm;4.88082681189681e-184!GO:0043231;intracellular membrane-bound organelle;7.95622528782902e-155!GO:0043227;membrane-bound organelle;1.35764346824254e-154!GO:0043226;organelle;4.00183090319937e-152!GO:0043229;intracellular organelle;8.64770080994834e-152!GO:0044444;cytoplasmic part;1.69740275901089e-138!GO:0044422;organelle part;1.82089161400446e-115!GO:0044446;intracellular organelle part;4.51931812918554e-114!GO:0032991;macromolecular complex;1.05700973427324e-81!GO:0030529;ribonucleoprotein complex;7.82740774296178e-71!GO:0005515;protein binding;3.12588184908274e-67!GO:0005739;mitochondrion;2.0530328454317e-66!GO:0044238;primary metabolic process;1.67265508034692e-64!GO:0044237;cellular metabolic process;5.6962861983187e-64!GO:0043170;macromolecule metabolic process;1.42413290995834e-58!GO:0043233;organelle lumen;7.74679343968757e-58!GO:0031974;membrane-enclosed lumen;7.74679343968757e-58!GO:0003723;RNA binding;5.84039486374096e-53!GO:0031090;organelle membrane;8.39005808184807e-52!GO:0044428;nuclear part;8.70486256275517e-51!GO:0019538;protein metabolic process;4.85886914629928e-45!GO:0005634;nucleus;4.85886914629928e-45!GO:0005840;ribosome;8.21600386726892e-45!GO:0044429;mitochondrial part;5.50927759732267e-44!GO:0043234;protein complex;1.23224821163104e-41!GO:0006412;translation;3.24493332137384e-41!GO:0015031;protein transport;2.33013713649572e-40!GO:0044260;cellular macromolecule metabolic process;7.39888130354092e-40!GO:0044267;cellular protein metabolic process;4.1730408513167e-39!GO:0003735;structural constituent of ribosome;5.63218187317523e-39!GO:0033036;macromolecule localization;1.35038359140008e-38!GO:0016043;cellular component organization and biogenesis;1.92647880353248e-38!GO:0031967;organelle envelope;4.41346983290331e-38!GO:0031975;envelope;1.04788736421188e-37!GO:0045184;establishment of protein localization;7.10439045323623e-37!GO:0009058;biosynthetic process;1.76637224889627e-36!GO:0005829;cytosol;3.04279118354066e-36!GO:0008104;protein localization;3.28026319682652e-36!GO:0044249;cellular biosynthetic process;3.01217263623015e-34!GO:0006396;RNA processing;3.01217263623015e-34!GO:0033279;ribosomal subunit;1.3945745191355e-33!GO:0009059;macromolecule biosynthetic process;2.77384089524272e-33!GO:0031981;nuclear lumen;8.80371912446924e-31!GO:0046907;intracellular transport;2.16293368292967e-30!GO:0005740;mitochondrial envelope;1.69674626729237e-29!GO:0016071;mRNA metabolic process;4.04551375907731e-28!GO:0031966;mitochondrial membrane;4.87558735255071e-28!GO:0019866;organelle inner membrane;1.07314831710777e-27!GO:0043283;biopolymer metabolic process;1.62293090903623e-27!GO:0008380;RNA splicing;8.58029796130137e-27!GO:0005743;mitochondrial inner membrane;6.11412861539128e-26!GO:0006886;intracellular protein transport;7.26687087719242e-26!GO:0005783;endoplasmic reticulum;1.43140128125965e-25!GO:0065003;macromolecular complex assembly;1.56205117267708e-25!GO:0010467;gene expression;2.38399142755212e-25!GO:0006397;mRNA processing;7.90877918739785e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.58699728602692e-23!GO:0006119;oxidative phosphorylation;4.15204666627449e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.15204666627449e-23!GO:0022607;cellular component assembly;1.78881995326468e-22!GO:0006996;organelle organization and biogenesis;5.29347964827413e-22!GO:0012505;endomembrane system;1.36679994495347e-21!GO:0044455;mitochondrial membrane part;2.63027124602517e-21!GO:0044445;cytosolic part;1.81875022664732e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.24930189777694e-20!GO:0005654;nucleoplasm;2.23082582266148e-19!GO:0044432;endoplasmic reticulum part;4.40257221553746e-19!GO:0043228;non-membrane-bound organelle;5.04197996173828e-19!GO:0043232;intracellular non-membrane-bound organelle;5.04197996173828e-19!GO:0006457;protein folding;1.0130446559146e-18!GO:0005681;spliceosome;1.0130446559146e-18!GO:0051649;establishment of cellular localization;2.23042933470243e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.18057127815636e-18!GO:0016462;pyrophosphatase activity;3.69625205134986e-18!GO:0051641;cellular localization;3.97708399672106e-18!GO:0048770;pigment granule;3.97708399672106e-18!GO:0042470;melanosome;3.97708399672106e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;4.19284099034241e-18!GO:0017111;nucleoside-triphosphatase activity;5.99412806372052e-18!GO:0005746;mitochondrial respiratory chain;1.03347649659565e-17!GO:0015935;small ribosomal subunit;1.25938545909038e-17!GO:0031980;mitochondrial lumen;2.27961116550311e-17!GO:0005759;mitochondrial matrix;2.27961116550311e-17!GO:0015934;large ribosomal subunit;5.75353798930563e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.29854998038265e-16!GO:0051186;cofactor metabolic process;1.39404090440252e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.49653961171803e-16!GO:0000166;nucleotide binding;2.31740887329675e-16!GO:0005794;Golgi apparatus;2.39650953422386e-16!GO:0044451;nucleoplasm part;2.97498639777385e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;8.16530780676123e-16!GO:0016874;ligase activity;1.21959294203983e-15!GO:0019941;modification-dependent protein catabolic process;1.79678892026216e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.79678892026216e-15!GO:0044257;cellular protein catabolic process;1.98913704446902e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.29220645021991e-15!GO:0003954;NADH dehydrogenase activity;2.29220645021991e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.29220645021991e-15!GO:0006511;ubiquitin-dependent protein catabolic process;4.34241568930681e-15!GO:0044265;cellular macromolecule catabolic process;4.70432582547194e-15!GO:0008134;transcription factor binding;1.17217281674557e-14!GO:0006512;ubiquitin cycle;1.22881586562234e-14!GO:0043285;biopolymer catabolic process;1.70006873023585e-14!GO:0005761;mitochondrial ribosome;2.16743977618518e-14!GO:0000313;organellar ribosome;2.16743977618518e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.0756273783169e-14!GO:0006259;DNA metabolic process;4.65890637960521e-14!GO:0030163;protein catabolic process;8.38694005459461e-14!GO:0044248;cellular catabolic process;8.79797165100939e-14!GO:0022618;protein-RNA complex assembly;9.0502965008862e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.40457099039242e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.58848930750268e-13!GO:0042773;ATP synthesis coupled electron transport;1.58848930750268e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.68141839943887e-13!GO:0045271;respiratory chain complex I;1.68141839943887e-13!GO:0005747;mitochondrial respiratory chain complex I;1.68141839943887e-13!GO:0009057;macromolecule catabolic process;1.87618825284577e-13!GO:0048193;Golgi vesicle transport;2.12198874507369e-13!GO:0005789;endoplasmic reticulum membrane;3.65506738095063e-13!GO:0051082;unfolded protein binding;4.12241469720736e-13!GO:0006732;coenzyme metabolic process;4.19581745218984e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.56793360324794e-13!GO:0016192;vesicle-mediated transport;8.94974957020117e-13!GO:0007049;cell cycle;1.02342893441178e-12!GO:0006605;protein targeting;1.70401727307061e-12!GO:0008135;translation factor activity, nucleic acid binding;1.87541476665863e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.18422763620481e-12!GO:0032553;ribonucleotide binding;7.19942107238376e-12!GO:0032555;purine ribonucleotide binding;7.19942107238376e-12!GO:0009055;electron carrier activity;1.00621754128884e-11!GO:0005730;nucleolus;1.33232521671464e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.96689579436658e-11!GO:0005793;ER-Golgi intermediate compartment;2.3528606107699e-11!GO:0017076;purine nucleotide binding;2.74471137487678e-11!GO:0003676;nucleic acid binding;1.02682301399591e-10!GO:0012501;programmed cell death;1.30271585804795e-10!GO:0006915;apoptosis;2.32801597391211e-10!GO:0009259;ribonucleotide metabolic process;2.77589260443764e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.30879837441011e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;6.10392886350945e-10!GO:0000375;RNA splicing, via transesterification reactions;6.10392886350945e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.10392886350945e-10!GO:0043412;biopolymer modification;7.11441296420345e-10!GO:0008639;small protein conjugating enzyme activity;9.09252368886719e-10!GO:0009150;purine ribonucleotide metabolic process;1.12297164911537e-09!GO:0008219;cell death;1.1755281686535e-09!GO:0016265;death;1.1755281686535e-09!GO:0005635;nuclear envelope;1.34164156053641e-09!GO:0006163;purine nucleotide metabolic process;1.39295602637618e-09!GO:0003743;translation initiation factor activity;1.4615843052638e-09!GO:0004842;ubiquitin-protein ligase activity;2.02524137306102e-09!GO:0016070;RNA metabolic process;2.37004796955955e-09!GO:0019787;small conjugating protein ligase activity;2.66911687275742e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.69322078486628e-09!GO:0009260;ribonucleotide biosynthetic process;2.87810002566961e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.95677413812029e-09!GO:0022402;cell cycle process;3.12607421501226e-09!GO:0003712;transcription cofactor activity;3.27059531494299e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.66600719221653e-09!GO:0006164;purine nucleotide biosynthetic process;4.01729432910158e-09!GO:0048523;negative regulation of cellular process;4.0319897950271e-09!GO:0003924;GTPase activity;4.89382419199381e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.47061958850237e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.47061958850237e-09!GO:0006464;protein modification process;5.50235961669319e-09!GO:0042623;ATPase activity, coupled;5.8657069031613e-09!GO:0031965;nuclear membrane;6.67014823119687e-09!GO:0009141;nucleoside triphosphate metabolic process;6.76533348764856e-09!GO:0015986;ATP synthesis coupled proton transport;8.23009775686349e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.23009775686349e-09!GO:0009060;aerobic respiration;8.49302205482674e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.00320520189203e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.00320520189203e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.02225459058247e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.1268827753859e-08!GO:0006413;translational initiation;1.20375321056985e-08!GO:0006974;response to DNA damage stimulus;1.45253214648124e-08!GO:0006446;regulation of translational initiation;1.46979575573668e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.4728442691656e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.4728442691656e-08!GO:0005788;endoplasmic reticulum lumen;1.59107843019884e-08!GO:0016887;ATPase activity;1.69417861549088e-08!GO:0008565;protein transporter activity;1.93382050237295e-08!GO:0005524;ATP binding;2.04610161955883e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.16825964372719e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.61827014915276e-08!GO:0032559;adenyl ribonucleotide binding;2.61827014915276e-08!GO:0016491;oxidoreductase activity;2.72206531337963e-08!GO:0019829;cation-transporting ATPase activity;2.95693409204849e-08!GO:0045333;cellular respiration;3.38035488209796e-08!GO:0005839;proteasome core complex (sensu Eukaryota);3.57628485015829e-08!GO:0016881;acid-amino acid ligase activity;4.20341205902094e-08!GO:0046034;ATP metabolic process;4.41103794715364e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.50817884815263e-08!GO:0016604;nuclear body;4.53246059339047e-08!GO:0044453;nuclear membrane part;5.08732312499383e-08!GO:0006913;nucleocytoplasmic transport;5.21294967729655e-08!GO:0051188;cofactor biosynthetic process;6.18162760690787e-08!GO:0009056;catabolic process;6.36305917131249e-08!GO:0006461;protein complex assembly;6.64025809909529e-08!GO:0051726;regulation of cell cycle;7.52449092188233e-08!GO:0000074;regulation of progression through cell cycle;7.71200939502853e-08!GO:0006399;tRNA metabolic process;8.14681563747178e-08!GO:0051169;nuclear transport;9.01708202415376e-08!GO:0006754;ATP biosynthetic process;9.79990551557849e-08!GO:0006753;nucleoside phosphate metabolic process;9.79990551557849e-08!GO:0030554;adenyl nucleotide binding;1.04969777290281e-07!GO:0005768;endosome;1.13698149521404e-07!GO:0030120;vesicle coat;1.18285036729771e-07!GO:0030662;coated vesicle membrane;1.18285036729771e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.18291083768826e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.2862518086737e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.2862518086737e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.2862518086737e-07!GO:0007005;mitochondrion organization and biogenesis;1.63693460635116e-07!GO:0048519;negative regulation of biological process;1.67791316607675e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.74339558511138e-07!GO:0000278;mitotic cell cycle;1.74339558511138e-07!GO:0042254;ribosome biogenesis and assembly;2.13561108844134e-07!GO:0043038;amino acid activation;2.25584119911874e-07!GO:0006418;tRNA aminoacylation for protein translation;2.25584119911874e-07!GO:0043039;tRNA aminoacylation;2.25584119911874e-07!GO:0048475;coated membrane;2.70312216266003e-07!GO:0030117;membrane coat;2.70312216266003e-07!GO:0006099;tricarboxylic acid cycle;2.86068063463365e-07!GO:0046356;acetyl-CoA catabolic process;2.86068063463365e-07!GO:0043687;post-translational protein modification;3.06236011446061e-07!GO:0004298;threonine endopeptidase activity;3.24276311869477e-07!GO:0051187;cofactor catabolic process;3.3839099052322e-07!GO:0009117;nucleotide metabolic process;3.95278520242999e-07!GO:0006366;transcription from RNA polymerase II promoter;4.02194035826399e-07!GO:0009109;coenzyme catabolic process;6.28798058962188e-07!GO:0006084;acetyl-CoA metabolic process;6.98713240322574e-07!GO:0017038;protein import;8.16203732231013e-07!GO:0005773;vacuole;8.27547762787077e-07!GO:0065002;intracellular protein transport across a membrane;8.38972647619471e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.3977147901534e-07!GO:0044431;Golgi apparatus part;1.09786270050607e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.36662533570116e-06!GO:0006281;DNA repair;1.56518064291389e-06!GO:0016607;nuclear speck;1.63274566078894e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;1.64682196627162e-06!GO:0009108;coenzyme biosynthetic process;1.92654537425632e-06!GO:0009719;response to endogenous stimulus;2.42400423557478e-06!GO:0065004;protein-DNA complex assembly;2.63333603240393e-06!GO:0005667;transcription factor complex;3.17548408907122e-06!GO:0045259;proton-transporting ATP synthase complex;3.35241933944371e-06!GO:0004386;helicase activity;3.5945813383212e-06!GO:0031988;membrane-bound vesicle;3.81134310711847e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.86407780535356e-06!GO:0005525;GTP binding;3.86407780535356e-06!GO:0043069;negative regulation of programmed cell death;4.44446543717518e-06!GO:0006323;DNA packaging;4.56478375153693e-06!GO:0005770;late endosome;4.84666971610748e-06!GO:0045786;negative regulation of progression through cell cycle;4.87353446229631e-06!GO:0032446;protein modification by small protein conjugation;5.23464595071112e-06!GO:0006752;group transfer coenzyme metabolic process;5.35778351739983e-06!GO:0031252;leading edge;6.06181317471284e-06!GO:0000323;lytic vacuole;6.41750542982969e-06!GO:0005764;lysosome;6.41750542982969e-06!GO:0005643;nuclear pore;6.73882900199907e-06!GO:0008026;ATP-dependent helicase activity;7.004320729618e-06!GO:0031982;vesicle;7.68888481183878e-06!GO:0016567;protein ubiquitination;8.15832920490294e-06!GO:0050794;regulation of cellular process;8.44327342863192e-06!GO:0016787;hydrolase activity;8.44371411488248e-06!GO:0043067;regulation of programmed cell death;8.63888375174696e-06!GO:0051246;regulation of protein metabolic process;8.65030129085873e-06!GO:0043066;negative regulation of apoptosis;8.7085301683357e-06!GO:0031410;cytoplasmic vesicle;8.77723093768357e-06!GO:0030532;small nuclear ribonucleoprotein complex;8.83300963860585e-06!GO:0042981;regulation of apoptosis;9.67713416982897e-06!GO:0006091;generation of precursor metabolites and energy;1.07160434984677e-05!GO:0051276;chromosome organization and biogenesis;1.35964252295789e-05!GO:0051789;response to protein stimulus;1.37029899667192e-05!GO:0006986;response to unfolded protein;1.37029899667192e-05!GO:0045454;cell redox homeostasis;1.37824677872857e-05!GO:0006613;cotranslational protein targeting to membrane;1.60075577384451e-05!GO:0000151;ubiquitin ligase complex;1.8818693753283e-05!GO:0005762;mitochondrial large ribosomal subunit;2.11382862827683e-05!GO:0000315;organellar large ribosomal subunit;2.11382862827683e-05!GO:0032561;guanyl ribonucleotide binding;2.18716404816376e-05!GO:0019001;guanyl nucleotide binding;2.18716404816376e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.50353302000709e-05!GO:0015399;primary active transmembrane transporter activity;2.50353302000709e-05!GO:0006333;chromatin assembly or disassembly;2.64904364796847e-05!GO:0008654;phospholipid biosynthetic process;2.96858378816205e-05!GO:0005798;Golgi-associated vesicle;3.85849239979417e-05!GO:0000139;Golgi membrane;4.061354263675e-05!GO:0005694;chromosome;4.33281680628198e-05!GO:0006916;anti-apoptosis;4.46644092026519e-05!GO:0000087;M phase of mitotic cell cycle;4.62994032874528e-05!GO:0046930;pore complex;5.13463522809267e-05!GO:0030867;rough endoplasmic reticulum membrane;5.73528591340452e-05!GO:0000785;chromatin;6.178309058902e-05!GO:0003697;single-stranded DNA binding;6.38573724327075e-05!GO:0007067;mitosis;6.3961462893343e-05!GO:0031324;negative regulation of cellular metabolic process;7.08257844602914e-05!GO:0000245;spliceosome assembly;7.45314044569128e-05!GO:0006612;protein targeting to membrane;7.51044555209361e-05!GO:0015980;energy derivation by oxidation of organic compounds;7.56637682014413e-05!GO:0043566;structure-specific DNA binding;8.15345374782739e-05!GO:0006364;rRNA processing;8.79361219864805e-05!GO:0003713;transcription coactivator activity;9.55388851709068e-05!GO:0006403;RNA localization;0.000101049646302045!GO:0003714;transcription corepressor activity;0.000101385409660829!GO:0050657;nucleic acid transport;0.00011224821487407!GO:0051236;establishment of RNA localization;0.00011224821487407!GO:0050658;RNA transport;0.00011224821487407!GO:0006334;nucleosome assembly;0.000114629840169521!GO:0019867;outer membrane;0.000132279927438066!GO:0016853;isomerase activity;0.000132279927438066!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000132640641042629!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000132921653619553!GO:0044427;chromosomal part;0.00013455667115816!GO:0044440;endosomal part;0.000137620646955142!GO:0010008;endosome membrane;0.000137620646955142!GO:0051301;cell division;0.00014167669250991!GO:0016859;cis-trans isomerase activity;0.000141760092939599!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000142102248736096!GO:0000314;organellar small ribosomal subunit;0.000143440391734045!GO:0005763;mitochondrial small ribosomal subunit;0.000143440391734045!GO:0016779;nucleotidyltransferase activity;0.000144384044385758!GO:0015630;microtubule cytoskeleton;0.000148654267176087!GO:0051170;nuclear import;0.000150952670189882!GO:0003724;RNA helicase activity;0.000151500363316033!GO:0016072;rRNA metabolic process;0.000156767567110125!GO:0006793;phosphorus metabolic process;0.000168260557195623!GO:0006796;phosphate metabolic process;0.000168260557195623!GO:0031968;organelle outer membrane;0.000171542870608795!GO:0016564;transcription repressor activity;0.000198028987086978!GO:0016310;phosphorylation;0.000226092158996229!GO:0008361;regulation of cell size;0.000230229646429032!GO:0022403;cell cycle phase;0.000236974003234618!GO:0043623;cellular protein complex assembly;0.000247598992508757!GO:0006606;protein import into nucleus;0.000250270081586915!GO:0033116;ER-Golgi intermediate compartment membrane;0.000263768671304697!GO:0048522;positive regulation of cellular process;0.000268868762716901!GO:0043492;ATPase activity, coupled to movement of substances;0.000270614506067151!GO:0016049;cell growth;0.000288233721940115!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000301955822313334!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000305141305128333!GO:0005905;coated pit;0.000310039322036873!GO:0006839;mitochondrial transport;0.000331989514463828!GO:0031497;chromatin assembly;0.000335472850122733!GO:0043021;ribonucleoprotein binding;0.000353461463299763!GO:0030176;integral to endoplasmic reticulum membrane;0.000403189889335614!GO:0043284;biopolymer biosynthetic process;0.000409214970130415!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000419477502514668!GO:0030133;transport vesicle;0.000458913061428712!GO:0005741;mitochondrial outer membrane;0.000478426397325442!GO:0007243;protein kinase cascade;0.000495241978998044!GO:0022890;inorganic cation transmembrane transporter activity;0.000496309902170748!GO:0005885;Arp2/3 protein complex;0.000522777763380896!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000532116691685529!GO:0005048;signal sequence binding;0.000537527410474187!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000562996798050726!GO:0008250;oligosaccharyl transferase complex;0.000563877403120298!GO:0030663;COPI coated vesicle membrane;0.000568780228163665!GO:0030126;COPI vesicle coat;0.000568780228163665!GO:0009892;negative regulation of metabolic process;0.0005715631188032!GO:0006414;translational elongation;0.000597897955562251!GO:0051427;hormone receptor binding;0.000635159709885115!GO:0009967;positive regulation of signal transduction;0.000642061352242298!GO:0019899;enzyme binding;0.000650774590754909!GO:0016563;transcription activator activity;0.000651311388202612!GO:0016740;transferase activity;0.000664408974047961!GO:0009165;nucleotide biosynthetic process;0.000666018294574362!GO:0004576;oligosaccharyl transferase activity;0.000671973020819381!GO:0044262;cellular carbohydrate metabolic process;0.000745658654307123!GO:0006260;DNA replication;0.000837429378660952!GO:0046474;glycerophospholipid biosynthetic process;0.000844953968828916!GO:0001558;regulation of cell growth;0.000859799281685339!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000859914346261763!GO:0050789;regulation of biological process;0.000876258117830241!GO:0016568;chromatin modification;0.000891842250873099!GO:0051920;peroxiredoxin activity;0.000942035837809486!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00098612059818737!GO:0030659;cytoplasmic vesicle membrane;0.00106259170442983!GO:0006818;hydrogen transport;0.00112768892315659!GO:0005791;rough endoplasmic reticulum;0.0012049533443589!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00120879858080554!GO:0030036;actin cytoskeleton organization and biogenesis;0.0012093987525261!GO:0035257;nuclear hormone receptor binding;0.00121993207609734!GO:0015992;proton transport;0.0012497192285!GO:0005769;early endosome;0.00126527893804714!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00129480384452483!GO:0015002;heme-copper terminal oxidase activity;0.00129480384452483!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00129480384452483!GO:0004129;cytochrome-c oxidase activity;0.00129480384452483!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00130287500474993!GO:0005813;centrosome;0.00130623190408881!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00138203981077772!GO:0051028;mRNA transport;0.00143680334827879!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00146612350370839!GO:0006979;response to oxidative stress;0.00148874175622495!GO:0030027;lamellipodium;0.00151424604184852!GO:0018196;peptidyl-asparagine modification;0.0015785280688777!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0015785280688777!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00162652949241783!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00162652949241783!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00162652949241783!GO:0030137;COPI-coated vesicle;0.00171834667974661!GO:0016481;negative regulation of transcription;0.00188965016952267!GO:0043681;protein import into mitochondrion;0.00205827761899449!GO:0030132;clathrin coat of coated pit;0.0021388597891277!GO:0008186;RNA-dependent ATPase activity;0.00222767769097857!GO:0007010;cytoskeleton organization and biogenesis;0.00248286547356541!GO:0006891;intra-Golgi vesicle-mediated transport;0.00255333672641444!GO:0008047;enzyme activator activity;0.00264666882260237!GO:0046467;membrane lipid biosynthetic process;0.00266025908013349!GO:0019843;rRNA binding;0.00266818441519352!GO:0046489;phosphoinositide biosynthetic process;0.00271684774910253!GO:0000279;M phase;0.00286276500267377!GO:0048500;signal recognition particle;0.00288781860928692!GO:0001726;ruffle;0.00296860657903036!GO:0005815;microtubule organizing center;0.00304849754011746!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00305063970688025!GO:0044433;cytoplasmic vesicle part;0.00305241939039993!GO:0019752;carboxylic acid metabolic process;0.00305241939039993!GO:0006082;organic acid metabolic process;0.0031476323707637!GO:0019798;procollagen-proline dioxygenase activity;0.00333339714386562!GO:0007040;lysosome organization and biogenesis;0.00347825695677278!GO:0016044;membrane organization and biogenesis;0.00362214714843874!GO:0031543;peptidyl-proline dioxygenase activity;0.00362256413491022!GO:0008632;apoptotic program;0.00363771715988331!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00371072060898818!GO:0031072;heat shock protein binding;0.00371624581984532!GO:0031902;late endosome membrane;0.00421690319374406!GO:0004177;aminopeptidase activity;0.00452315982152735!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0051464603734327!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0051464603734327!GO:0006650;glycerophospholipid metabolic process;0.00565965861910342!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00566707267236102!GO:0004004;ATP-dependent RNA helicase activity;0.0057891450845833!GO:0051252;regulation of RNA metabolic process;0.00583468774624136!GO:0008180;signalosome;0.0059925659995995!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00599444397499582!GO:0012506;vesicle membrane;0.00601101631420097!GO:0030134;ER to Golgi transport vesicle;0.00605580880888693!GO:0007264;small GTPase mediated signal transduction;0.00641044410612511!GO:0030658;transport vesicle membrane;0.00641112407627008!GO:0003729;mRNA binding;0.00641765844499886!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00655621736468224!GO:0045047;protein targeting to ER;0.00655621736468224!GO:0017166;vinculin binding;0.00696156432122613!GO:0051168;nuclear export;0.00696156432122613!GO:0030118;clathrin coat;0.00699804353780678!GO:0046483;heterocycle metabolic process;0.00709712085287997!GO:0003899;DNA-directed RNA polymerase activity;0.00711624748219407!GO:0030029;actin filament-based process;0.00714154665066389!GO:0007006;mitochondrial membrane organization and biogenesis;0.00731427608776906!GO:0065009;regulation of a molecular function;0.00750562315873497!GO:0007050;cell cycle arrest;0.00757027132004586!GO:0007033;vacuole organization and biogenesis;0.00768223126499899!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00792359325568871!GO:0030127;COPII vesicle coat;0.00792359325568871!GO:0012507;ER to Golgi transport vesicle membrane;0.00792359325568871!GO:0008139;nuclear localization sequence binding;0.00803255701402963!GO:0043488;regulation of mRNA stability;0.0081485920951076!GO:0043487;regulation of RNA stability;0.0081485920951076!GO:0016363;nuclear matrix;0.00816456390377488!GO:0006626;protein targeting to mitochondrion;0.00817725941053858!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00844769680848679!GO:0005869;dynactin complex;0.00848523035058168!GO:0051329;interphase of mitotic cell cycle;0.00856425385029498!GO:0005096;GTPase activator activity;0.00856940827467417!GO:0008610;lipid biosynthetic process;0.00869533759606843!GO:0006383;transcription from RNA polymerase III promoter;0.0087418182313751!GO:0042802;identical protein binding;0.00902473381141622!GO:0048468;cell development;0.00905989068316779!GO:0003690;double-stranded DNA binding;0.00949850945676367!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0100834498816667!GO:0048518;positive regulation of biological process;0.0103569667356318!GO:0007034;vacuolar transport;0.0111701511288485!GO:0008312;7S RNA binding;0.0112178522186856!GO:0051287;NAD binding;0.0113214288181446!GO:0048487;beta-tubulin binding;0.0116077079304382!GO:0000786;nucleosome;0.0121850923226045!GO:0045893;positive regulation of transcription, DNA-dependent;0.0127472827306377!GO:0005581;collagen;0.0127521531782014!GO:0051087;chaperone binding;0.0127667174838847!GO:0003746;translation elongation factor activity;0.0127667174838847!GO:0050811;GABA receptor binding;0.0131518802535619!GO:0005637;nuclear inner membrane;0.0132159418483508!GO:0006984;ER-nuclear signaling pathway;0.0136578890713523!GO:0045892;negative regulation of transcription, DNA-dependent;0.0138174302746923!GO:0048471;perinuclear region of cytoplasm;0.0139585287332718!GO:0006740;NADPH regeneration;0.0139648353103862!GO:0006098;pentose-phosphate shunt;0.0139648353103862!GO:0003711;transcription elongation regulator activity;0.0139839631735006!GO:0006672;ceramide metabolic process;0.0143341084090976!GO:0006497;protein amino acid lipidation;0.014415633938694!GO:0005774;vacuolar membrane;0.0144611577899371!GO:0003684;damaged DNA binding;0.0144764896319066!GO:0006509;membrane protein ectodomain proteolysis;0.0151428295199655!GO:0033619;membrane protein proteolysis;0.0151428295199655!GO:0030521;androgen receptor signaling pathway;0.0155387387414416!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0156793035628919!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0157227886282959!GO:0030660;Golgi-associated vesicle membrane;0.0160156351140252!GO:0006595;polyamine metabolic process;0.016459938569777!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0164626476238026!GO:0040008;regulation of growth;0.0170630813103085!GO:0005862;muscle thin filament tropomyosin;0.0175668148804097!GO:0006402;mRNA catabolic process;0.0178389097979498!GO:0030119;AP-type membrane coat adaptor complex;0.0179564817586964!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0182428866819152!GO:0016197;endosome transport;0.018441317029492!GO:0000059;protein import into nucleus, docking;0.0186467362914044!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0186633214687606!GO:0045941;positive regulation of transcription;0.0189342250332751!GO:0031418;L-ascorbic acid binding;0.0189587745391691!GO:0008234;cysteine-type peptidase activity;0.0193770758119263!GO:0006749;glutathione metabolic process;0.0194116277168782!GO:0000082;G1/S transition of mitotic cell cycle;0.0194338235310604!GO:0008320;protein transmembrane transporter activity;0.0204307715562125!GO:0006950;response to stress;0.0210346723048709!GO:0022408;negative regulation of cell-cell adhesion;0.0212605339396526!GO:0046519;sphingoid metabolic process;0.0214641921799336!GO:0016272;prefoldin complex;0.0216639748178231!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0219940931701172!GO:0006354;RNA elongation;0.0224051937874687!GO:0000049;tRNA binding;0.0224051937874687!GO:0006007;glucose catabolic process;0.0227204753740825!GO:0043022;ribosome binding;0.022854847955491!GO:0005684;U2-dependent spliceosome;0.0236337895279204!GO:0043433;negative regulation of transcription factor activity;0.0238593077517297!GO:0051128;regulation of cellular component organization and biogenesis;0.0239421453625948!GO:0006790;sulfur metabolic process;0.0243042070164778!GO:0045045;secretory pathway;0.024645850893067!GO:0005819;spindle;0.0247990741457898!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.02534896833397!GO:0006118;electron transport;0.0261744324933408!GO:0006352;transcription initiation;0.0263054782875496!GO:0000209;protein polyubiquitination;0.0266950096521124!GO:0051325;interphase;0.0269065942262666!GO:0051098;regulation of binding;0.0270149403752412!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0271028499986825!GO:0045792;negative regulation of cell size;0.0273391866135101!GO:0006778;porphyrin metabolic process;0.0274892322920398!GO:0033013;tetrapyrrole metabolic process;0.0274892322920398!GO:0031625;ubiquitin protein ligase binding;0.0278541885515763!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0281403131107708!GO:0030833;regulation of actin filament polymerization;0.0282436026214966!GO:0030131;clathrin adaptor complex;0.0282940543808545!GO:0031529;ruffle organization and biogenesis;0.0283812846746275!GO:0000096;sulfur amino acid metabolic process;0.0285400350375443!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0288600457398887!GO:0006506;GPI anchor biosynthetic process;0.0289105014968823!GO:0007041;lysosomal transport;0.0297210966922134!GO:0031124;mRNA 3'-end processing;0.0298275329073052!GO:0030503;regulation of cell redox homeostasis;0.029942666444113!GO:0016408;C-acyltransferase activity;0.029942666444113!GO:0030125;clathrin vesicle coat;0.0301285248534941!GO:0030665;clathrin coated vesicle membrane;0.0301285248534941!GO:0065007;biological regulation;0.0302567143691545!GO:0008033;tRNA processing;0.0304923565247376!GO:0006520;amino acid metabolic process;0.0310976854031686!GO:0042158;lipoprotein biosynthetic process;0.031108405195135!GO:0044437;vacuolar part;0.031211671504739!GO:0030384;phosphoinositide metabolic process;0.0314659457161439!GO:0030308;negative regulation of cell growth;0.0317895090598492!GO:0005832;chaperonin-containing T-complex;0.0319250301377416!GO:0046979;TAP2 binding;0.0326158339223045!GO:0046977;TAP binding;0.0326158339223045!GO:0046978;TAP1 binding;0.0326158339223045!GO:0008092;cytoskeletal protein binding;0.0329894269063516!GO:0016251;general RNA polymerase II transcription factor activity;0.0334166213010824!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0334729536890122!GO:0006368;RNA elongation from RNA polymerase II promoter;0.033542619866244!GO:0006739;NADP metabolic process;0.033831768161163!GO:0003756;protein disulfide isomerase activity;0.033831768161163!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.033831768161163!GO:0051881;regulation of mitochondrial membrane potential;0.0340162197623947!GO:0035035;histone acetyltransferase binding;0.0341568925221895!GO:0015631;tubulin binding;0.0345630820061943!GO:0042168;heme metabolic process;0.0345630820061943!GO:0006635;fatty acid beta-oxidation;0.034837650415664!GO:0051539;4 iron, 4 sulfur cluster binding;0.0349840586672028!GO:0007021;tubulin folding;0.0354538102524661!GO:0051540;metal cluster binding;0.0358216154780607!GO:0051536;iron-sulfur cluster binding;0.0358216154780607!GO:0005765;lysosomal membrane;0.0366523476312138!GO:0030032;lamellipodium biogenesis;0.0368877682196731!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0372762088428185!GO:0005874;microtubule;0.0377525483354698!GO:0006505;GPI anchor metabolic process;0.0380230292534459!GO:0003923;GPI-anchor transamidase activity;0.0382068390217555!GO:0016255;attachment of GPI anchor to protein;0.0382068390217555!GO:0042765;GPI-anchor transamidase complex;0.0382068390217555!GO:0050662;coenzyme binding;0.0383020934586037!GO:0033673;negative regulation of kinase activity;0.0385810869072832!GO:0006469;negative regulation of protein kinase activity;0.0385810869072832!GO:0030041;actin filament polymerization;0.0393194436122179!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0395934281907133!GO:0008538;proteasome activator activity;0.0398355505898633!GO:0007030;Golgi organization and biogenesis;0.0403731381693383!GO:0051270;regulation of cell motility;0.0403939552840733!GO:0008601;protein phosphatase type 2A regulator activity;0.0407558247939957!GO:0035258;steroid hormone receptor binding;0.040939425659841!GO:0007051;spindle organization and biogenesis;0.041044894329951!GO:0008637;apoptotic mitochondrial changes;0.0412388495710956!GO:0016584;nucleosome positioning;0.0413067385329672!GO:0050681;androgen receptor binding;0.0417178551003356!GO:0051348;negative regulation of transferase activity;0.0428313833473814!GO:0003988;acetyl-CoA C-acyltransferase activity;0.043079200536149!GO:0016126;sterol biosynthetic process;0.043079200536149!GO:0051052;regulation of DNA metabolic process;0.0432743199785408!GO:0006289;nucleotide-excision repair;0.0439283354480896!GO:0009966;regulation of signal transduction;0.0444472819963075!GO:0051101;regulation of DNA binding;0.0447795860919274!GO:0008484;sulfuric ester hydrolase activity;0.0448946576952138!GO:0045936;negative regulation of phosphate metabolic process;0.0451818601771152!GO:0004214;dipeptidyl-peptidase I activity;0.0452428713927357!GO:0030518;steroid hormone receptor signaling pathway;0.0452428713927357!GO:0046426;negative regulation of JAK-STAT cascade;0.045268891851117!GO:0001666;response to hypoxia;0.0458368339565002!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0459588147066177!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0459588147066177!GO:0004784;superoxide dismutase activity;0.0459588147066177!GO:0005586;collagen type III;0.046111916700152!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0472593339737649!GO:0000339;RNA cap binding;0.0477942596368225!GO:0007242;intracellular signaling cascade;0.04884535073073 | |||
|sample_id=10812 | |sample_id=10812 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=small intestine | |sample_tissue=small intestine | ||
|top_motifs=NKX3-1:2.21743245631;GZF1:2.16889734094;ESR1:2.08750006099;UFEwm:1.97796793424;MYBL2:1.68112540702;HOXA9_MEIS1:1.54541544475;HMGA1,2:1.4863308352;ALX4:1.44871893492;NKX2-2,8:1.39788640193;PAX4:1.37236284738;TBX4,5:1.36015334927;EBF1:1.30816916569;FOXL1:1.30661091081;RXR{A,B,G}:1.27066237819;TFAP4:1.26630204427;TFCP2:1.20798317175;TEF:1.09820514386;HMX1:1.0880805689;NFE2L1:1.06746209611;GTF2A1,2:1.06533870135;EVI1:1.0346397435;FOX{I1,J2}:1.00392522525;IRF1,2:0.999783937989;TEAD1:0.942138338047;TP53:0.927817982908;TLX1..3_NFIC{dimer}:0.922068864473;KLF4:0.884107486519;HES1:0.854411157613;NR3C1:0.81812429354;NANOG{mouse}:0.816257042288;ARID5B:0.813164881366;SRF:0.810480977158;TAL1_TCF{3,4,12}:0.761534052245;HSF1,2:0.745306023888;NR5A1,2:0.727943388939;HAND1,2:0.698911678954;LHX3,4:0.695379614329;ZIC1..3:0.64106127498;FOX{F1,F2,J1}:0.62339274205;PAX5:0.619083940261;ZNF423:0.615057367695;TBP:0.601357999292;ZBTB6:0.598245778831;EN1,2:0.592984533;NFIX:0.576416219822;YY1:0.573111033404;PAX1,9:0.542044817193;DBP:0.511705656069;MYFfamily:0.504199074882;MAFB:0.484600300733;IKZF1:0.473168680992;LMO2:0.464113822183;MAZ:0.457278623555;CDC5L:0.438633795081;NR6A1:0.430590212068;GLI1..3:0.430539127589;TFAP2{A,C}:0.413630700014;MTE{core}:0.410941615625;NKX6-1,2:0.39782818872;AIRE:0.393852258387;GTF2I:0.385883251425;ZNF238:0.37677114941;POU6F1:0.347115486782;IRF7:0.306867087913;GFI1B:0.248756922163;HOX{A4,D4}:0.242361618978;HIC1:0.238678812926;SOX5:0.228286668519;TFAP2B:0.212636270681;PRDM1:0.206786233626;NFE2L2:0.203951660546;STAT1,3:0.166236890312;STAT5{A,B}:0.137468129663;CDX1,2,4:0.135510396011;RXRA_VDR{dimer}:0.105410899135;PATZ1:0.103625209875;FOXO1,3,4:0.0970558700949;MTF1:0.0910019341576;SOX17:0.0809829933908;PAX8:0.037860005326;HNF1A:0.0126761155404;FOXN1:0.00938614093196;SPZ1:0.0084702034078;FOXP1:0.00761835309591;XCPE1{core}:-0.00522679493305;ATF6:-0.00771871465851;FOXD3:-0.026237535162;FOX{D1,D2}:-0.0285147752616;IKZF2:-0.0373445802408;SP1:-0.0476704724614;NFATC1..3:-0.0897079009097;TOPORS:-0.096186160412;XBP1:-0.0994408280516;HNF4A_NR2F1,2:-0.110025264357;REST:-0.114027378061;GCM1,2:-0.133849541136;STAT2,4,6:-0.137922412299;MEF2{A,B,C,D}:-0.142124851186;NKX3-2:-0.166537108479;RREB1:-0.176082582589;AHR_ARNT_ARNT2:-0.189688843042;MZF1:-0.207551315498;NFE2:-0.220019527867;GFI1:-0.222222479394;MED-1{core}:-0.225334408007;OCT4_SOX2{dimer}:-0.228630665467;BACH2:-0.23793050445;PAX6:-0.238977548748;T:-0.252758947171;NHLH1,2:-0.272336053338;SOX2:-0.28797378728;HLF:-0.296594807904;GATA4:-0.298885245081;PPARG:-0.311166989297;NFKB1_REL_RELA:-0.312303452317;PAX3,7:-0.312584161488;TFDP1:-0.314077950858;CEBPA,B_DDIT3:-0.320730456878;ONECUT1,2:-0.323504260565;ZFP161:-0.326211685611;HIF1A:-0.326702497158;BPTF:-0.335330280179;ZNF143:-0.364143075291;FOXA2:-0.368838247134;ELK1,4_GABP{A,B1}:-0.381643917397;AR:-0.391543182062;MYB:-0.395296142422;FOS_FOS{B,L1}_JUN{B,D}:-0.40590954953;ZBTB16:-0.407135544179;E2F1..5:-0.411896026942;HOX{A5,B5}:-0.430282082453;RFX1:-0.440227681323;MYOD1:-0.442527726085;SPIB:-0.443274247549;LEF1_TCF7_TCF7L1,2:-0.445661182767;POU5F1:-0.451868267123;PBX1:-0.462110956556;FOSL2:-0.463798133832;TGIF1:-0.495404607606;ZNF148:-0.498425075656;SMAD1..7,9:-0.50661862264;PITX1..3:-0.51494934882;ZNF384:-0.534750187303;POU1F1:-0.543108053636;FOXQ1:-0.557887517323;PAX2:-0.563367521105;DMAP1_NCOR{1,2}_SMARC:-0.56823546855;NR1H4:-0.570158347448;EGR1..3:-0.593688893617;RORA:-0.595385649217;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.604488229963;HOX{A6,A7,B6,B7}:-0.62167731845;ETS1,2:-0.636242685698;SNAI1..3:-0.642749647709;RUNX1..3:-0.646249824721;ESRRA:-0.664415175225;ATF2:-0.674090955019;PRRX1,2:-0.689470746711;NRF1:-0.702946400131;POU2F1..3:-0.707972538826;SPI1:-0.755548495014;bHLH_family:-0.760974628903;FOXM1:-0.76271559839;RFX2..5_RFXANK_RFXAP:-0.772735316596;CUX2:-0.817524464749;NKX2-1,4:-0.822037083432;ELF1,2,4:-0.873662467265;JUN:-0.878730050905;ATF4:-0.888200701433;NFIL3:-0.913043420836;CREB1:-0.934611871406;TLX2:-0.93545654137;FOXP3:-0.939308782898;SREBF1,2:-0.941929889679;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.978270752294;ZEB1:-0.980488957966;ATF5_CREB3:-1.00409389707;VSX1,2:-1.01439514377;PDX1:-1.02446430128;NFY{A,B,C}:-1.03197524901;SOX{8,9,10}:-1.05132144775;RBPJ:-1.05312261561;NKX2-3_NKX2-5:-1.07242433485;HBP1_HMGB_SSRP1_UBTF:-1.09125845337;GATA6:-1.11212491769;ADNP_IRX_SIX_ZHX:-1.19490233651;POU3F1..4:-1.29766967558;CRX:-1.35183092568;EP300:-1.40631718988;ALX1:-1.45861270008;BREu{core}:-1.61006943543;NANOG:-2.56805540244 | |top_motifs=NKX3-1:2.21743245631;GZF1:2.16889734094;ESR1:2.08750006099;UFEwm:1.97796793424;MYBL2:1.68112540702;HOXA9_MEIS1:1.54541544475;HMGA1,2:1.4863308352;ALX4:1.44871893492;NKX2-2,8:1.39788640193;PAX4:1.37236284738;TBX4,5:1.36015334927;EBF1:1.30816916569;FOXL1:1.30661091081;RXR{A,B,G}:1.27066237819;TFAP4:1.26630204427;TFCP2:1.20798317175;TEF:1.09820514386;HMX1:1.0880805689;NFE2L1:1.06746209611;GTF2A1,2:1.06533870135;EVI1:1.0346397435;FOX{I1,J2}:1.00392522525;IRF1,2:0.999783937989;TEAD1:0.942138338047;TP53:0.927817982908;TLX1..3_NFIC{dimer}:0.922068864473;KLF4:0.884107486519;HES1:0.854411157613;NR3C1:0.81812429354;NANOG{mouse}:0.816257042288;ARID5B:0.813164881366;SRF:0.810480977158;TAL1_TCF{3,4,12}:0.761534052245;HSF1,2:0.745306023888;NR5A1,2:0.727943388939;HAND1,2:0.698911678954;LHX3,4:0.695379614329;ZIC1..3:0.64106127498;FOX{F1,F2,J1}:0.62339274205;PAX5:0.619083940261;ZNF423:0.615057367695;TBP:0.601357999292;ZBTB6:0.598245778831;EN1,2:0.592984533;NFIX:0.576416219822;YY1:0.573111033404;PAX1,9:0.542044817193;DBP:0.511705656069;MYFfamily:0.504199074882;MAFB:0.484600300733;IKZF1:0.473168680992;LMO2:0.464113822183;MAZ:0.457278623555;CDC5L:0.438633795081;NR6A1:0.430590212068;GLI1..3:0.430539127589;TFAP2{A,C}:0.413630700014;MTE{core}:0.410941615625;NKX6-1,2:0.39782818872;AIRE:0.393852258387;GTF2I:0.385883251425;ZNF238:0.37677114941;POU6F1:0.347115486782;IRF7:0.306867087913;GFI1B:0.248756922163;HOX{A4,D4}:0.242361618978;HIC1:0.238678812926;SOX5:0.228286668519;TFAP2B:0.212636270681;PRDM1:0.206786233626;NFE2L2:0.203951660546;STAT1,3:0.166236890312;STAT5{A,B}:0.137468129663;CDX1,2,4:0.135510396011;RXRA_VDR{dimer}:0.105410899135;PATZ1:0.103625209875;FOXO1,3,4:0.0970558700949;MTF1:0.0910019341576;SOX17:0.0809829933908;PAX8:0.037860005326;HNF1A:0.0126761155404;FOXN1:0.00938614093196;SPZ1:0.0084702034078;FOXP1:0.00761835309591;XCPE1{core}:-0.00522679493305;ATF6:-0.00771871465851;FOXD3:-0.026237535162;FOX{D1,D2}:-0.0285147752616;IKZF2:-0.0373445802408;SP1:-0.0476704724614;NFATC1..3:-0.0897079009097;TOPORS:-0.096186160412;XBP1:-0.0994408280516;HNF4A_NR2F1,2:-0.110025264357;REST:-0.114027378061;GCM1,2:-0.133849541136;STAT2,4,6:-0.137922412299;MEF2{A,B,C,D}:-0.142124851186;NKX3-2:-0.166537108479;RREB1:-0.176082582589;AHR_ARNT_ARNT2:-0.189688843042;MZF1:-0.207551315498;NFE2:-0.220019527867;GFI1:-0.222222479394;MED-1{core}:-0.225334408007;OCT4_SOX2{dimer}:-0.228630665467;BACH2:-0.23793050445;PAX6:-0.238977548748;T:-0.252758947171;NHLH1,2:-0.272336053338;SOX2:-0.28797378728;HLF:-0.296594807904;GATA4:-0.298885245081;PPARG:-0.311166989297;NFKB1_REL_RELA:-0.312303452317;PAX3,7:-0.312584161488;TFDP1:-0.314077950858;CEBPA,B_DDIT3:-0.320730456878;ONECUT1,2:-0.323504260565;ZFP161:-0.326211685611;HIF1A:-0.326702497158;BPTF:-0.335330280179;ZNF143:-0.364143075291;FOXA2:-0.368838247134;ELK1,4_GABP{A,B1}:-0.381643917397;AR:-0.391543182062;MYB:-0.395296142422;FOS_FOS{B,L1}_JUN{B,D}:-0.40590954953;ZBTB16:-0.407135544179;E2F1..5:-0.411896026942;HOX{A5,B5}:-0.430282082453;RFX1:-0.440227681323;MYOD1:-0.442527726085;SPIB:-0.443274247549;LEF1_TCF7_TCF7L1,2:-0.445661182767;POU5F1:-0.451868267123;PBX1:-0.462110956556;FOSL2:-0.463798133832;TGIF1:-0.495404607606;ZNF148:-0.498425075656;SMAD1..7,9:-0.50661862264;PITX1..3:-0.51494934882;ZNF384:-0.534750187303;POU1F1:-0.543108053636;FOXQ1:-0.557887517323;PAX2:-0.563367521105;DMAP1_NCOR{1,2}_SMARC:-0.56823546855;NR1H4:-0.570158347448;EGR1..3:-0.593688893617;RORA:-0.595385649217;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.604488229963;HOX{A6,A7,B6,B7}:-0.62167731845;ETS1,2:-0.636242685698;SNAI1..3:-0.642749647709;RUNX1..3:-0.646249824721;ESRRA:-0.664415175225;ATF2:-0.674090955019;PRRX1,2:-0.689470746711;NRF1:-0.702946400131;POU2F1..3:-0.707972538826;SPI1:-0.755548495014;bHLH_family:-0.760974628903;FOXM1:-0.76271559839;RFX2..5_RFXANK_RFXAP:-0.772735316596;CUX2:-0.817524464749;NKX2-1,4:-0.822037083432;ELF1,2,4:-0.873662467265;JUN:-0.878730050905;ATF4:-0.888200701433;NFIL3:-0.913043420836;CREB1:-0.934611871406;TLX2:-0.93545654137;FOXP3:-0.939308782898;SREBF1,2:-0.941929889679;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.978270752294;ZEB1:-0.980488957966;ATF5_CREB3:-1.00409389707;VSX1,2:-1.01439514377;PDX1:-1.02446430128;NFY{A,B,C}:-1.03197524901;SOX{8,9,10}:-1.05132144775;RBPJ:-1.05312261561;NKX2-3_NKX2-5:-1.07242433485;HBP1_HMGB_SSRP1_UBTF:-1.09125845337;GATA6:-1.11212491769;ADNP_IRX_SIX_ZHX:-1.19490233651;POU3F1..4:-1.29766967558;CRX:-1.35183092568;EP300:-1.40631718988;ALX1:-1.45861270008;BREu{core}:-1.61006943543;NANOG:-2.56805540244 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10812-111B2;search_select_hide=table117:FF:10812-111B2 | |||
}} | }} | ||
Latest revision as of 15:06, 3 June 2020
| Name: | normal intestinal epithelial cell line:FHs 74 Int |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11950 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11950
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11950
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.983 |
| 10 | 10 | 0.872 |
| 100 | 100 | 0.249 |
| 101 | 101 | 0.249 |
| 102 | 102 | 0.316 |
| 103 | 103 | 0.203 |
| 104 | 104 | 0.679 |
| 105 | 105 | 0.102 |
| 106 | 106 | 0.0192 |
| 107 | 107 | 0.013 |
| 108 | 108 | 0.207 |
| 109 | 109 | 0.0736 |
| 11 | 11 | 0.352 |
| 110 | 110 | 0.38 |
| 111 | 111 | 0.766 |
| 112 | 112 | 0.219 |
| 113 | 113 | 0.555 |
| 114 | 114 | 0.196 |
| 115 | 115 | 0.0014 |
| 116 | 116 | 0.0188 |
| 117 | 117 | 0.637 |
| 118 | 118 | 0.547 |
| 119 | 119 | 0.239 |
| 12 | 12 | 0.265 |
| 120 | 120 | 0.338 |
| 121 | 121 | 0.0674 |
| 122 | 122 | 0.0369 |
| 123 | 123 | 0.362 |
| 124 | 124 | 0.477 |
| 125 | 125 | 0.86 |
| 126 | 126 | 0.958 |
| 127 | 127 | 0.994 |
| 128 | 128 | 0.0295 |
| 129 | 129 | 0.139 |
| 13 | 13 | 0.77 |
| 130 | 130 | 0.708 |
| 131 | 131 | 0.676 |
| 132 | 132 | 0.37 |
| 133 | 133 | 0.922 |
| 134 | 134 | 0.829 |
| 135 | 135 | 0.675 |
| 136 | 136 | 0.229 |
| 137 | 137 | 0.09 |
| 138 | 138 | 0.952 |
| 139 | 139 | 0.577 |
| 14 | 14 | 0.236 |
| 140 | 140 | 0.86 |
| 141 | 141 | 0.82 |
| 142 | 142 | 0.759 |
| 143 | 143 | 0.959 |
| 144 | 144 | 0.552 |
| 145 | 145 | 0.444 |
| 146 | 146 | 0.72 |
| 147 | 147 | 0.23 |
| 148 | 148 | 0.419 |
| 149 | 149 | 0.0216 |
| 15 | 15 | 0.504 |
| 150 | 150 | 0.314 |
| 151 | 151 | 0.411 |
| 152 | 152 | 0.00342 |
| 153 | 153 | 0.372 |
| 154 | 154 | 0.542 |
| 155 | 155 | 0.0795 |
| 156 | 156 | 0.694 |
| 157 | 157 | 0.264 |
| 158 | 158 | 0.00486 |
| 159 | 159 | 0.648 |
| 16 | 16 | 0.0471 |
| 160 | 160 | 0.799 |
| 161 | 161 | 0.935 |
| 162 | 162 | 0.661 |
| 163 | 163 | 0.304 |
| 164 | 164 | 0.0867 |
| 165 | 165 | 0.468 |
| 166 | 166 | 0.0236 |
| 167 | 167 | 0.893 |
| 168 | 168 | 0.898 |
| 169 | 169 | 0.0379 |
| 17 | 17 | 0.471 |
| 18 | 18 | 0.355 |
| 19 | 19 | 0.02 |
| 2 | 2 | 0.26 |
| 20 | 20 | 0.184 |
| 21 | 21 | 0.123 |
| 22 | 22 | 0.438 |
| 23 | 23 | 0.267 |
| 24 | 24 | 0.844 |
| 25 | 25 | 0.495 |
| 26 | 26 | 0.191 |
| 27 | 27 | 0.249 |
| 28 | 28 | 0.194 |
| 29 | 29 | 0.39 |
| 3 | 3 | 0.404 |
| 30 | 30 | 0.506 |
| 31 | 31 | 0.463 |
| 32 | 32 | 1.19795e-14 |
| 33 | 33 | 0.591 |
| 34 | 34 | 0.697 |
| 35 | 35 | 0.507 |
| 36 | 36 | 0.105 |
| 37 | 37 | 0.175 |
| 38 | 38 | 0.72 |
| 39 | 39 | 0.478 |
| 4 | 4 | 0.289 |
| 40 | 40 | 0.733 |
| 41 | 41 | 0.293 |
| 42 | 42 | 0.761 |
| 43 | 43 | 0.217 |
| 44 | 44 | 0.015 |
| 45 | 45 | 0.711 |
| 46 | 46 | 0.265 |
| 47 | 47 | 0.478 |
| 48 | 48 | 0.962 |
| 49 | 49 | 0.943 |
| 5 | 5 | 0.875 |
| 50 | 50 | 0.502 |
| 51 | 51 | 0.45 |
| 52 | 52 | 0.604 |
| 53 | 53 | 0.313 |
| 54 | 54 | 0.603 |
| 55 | 55 | 0.253 |
| 56 | 56 | 0.718 |
| 57 | 57 | 0.533 |
| 58 | 58 | 0.812 |
| 59 | 59 | 0.0101 |
| 6 | 6 | 0.871 |
| 60 | 60 | 0.796 |
| 61 | 61 | 0.419 |
| 62 | 62 | 0.494 |
| 63 | 63 | 0.375 |
| 64 | 64 | 0.915 |
| 65 | 65 | 0.412 |
| 66 | 66 | 0.184 |
| 67 | 67 | 0.503 |
| 68 | 68 | 0.598 |
| 69 | 69 | 0.344 |
| 7 | 7 | 0.483 |
| 70 | 70 | 0.125 |
| 71 | 71 | 0.104 |
| 72 | 72 | 0.637 |
| 73 | 73 | 0.00444 |
| 74 | 74 | 0.734 |
| 75 | 75 | 0.818 |
| 76 | 76 | 0.847 |
| 77 | 77 | 0.0183 |
| 78 | 78 | 0.439 |
| 79 | 79 | 7.9524e-4 |
| 8 | 8 | 0.0945 |
| 80 | 80 | 0.0705 |
| 81 | 81 | 0.537 |
| 82 | 82 | 0.201 |
| 83 | 83 | 0.811 |
| 84 | 84 | 0.913 |
| 85 | 85 | 0.0216 |
| 86 | 86 | 0.656 |
| 87 | 87 | 0.266 |
| 88 | 88 | 0.9 |
| 89 | 89 | 0.165 |
| 9 | 9 | 0.46 |
| 90 | 90 | 0.664 |
| 91 | 91 | 0.5 |
| 92 | 92 | 0.356 |
| 93 | 93 | 0.0842 |
| 94 | 94 | 0.644 |
| 95 | 95 | 0.0428 |
| 96 | 96 | 0.918 |
| 97 | 97 | 0.773 |
| 98 | 98 | 0.744 |
| 99 | 99 | 3.39551e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11950
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0002563 intestinal epithelial cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100003 intestinal cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100003 (intestinal cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
