FF:11572-120E6: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (25 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004736 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008250;DRR009122;DRZ000547;DRZ001932;DRZ011897;DRZ013282 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0005629,UBERON:0002049,UBERON:0006876,UBERON:0005358,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001886,UBERON:0001016,UBERON:0004535,UBERON:0004086,UBERON:0005282,UBERON:0001009,UBERON:0005281 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002549 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000060 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor2.CNhs12344.11572-120E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor2.CNhs12344.11572-120E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor2.CNhs12344.11572-120E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor2.CNhs12344.11572-120E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor2.CNhs12344.11572-120E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11572-120E6 | |id=FF:11572-120E6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000060 | ||
|is_obsolete= | |||
|library_id=CNhs12344 | |||
|library_id_phase_based=2:CNhs12344 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11572 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11572 | |||
|name=Fibroblast - Choroid Plexus, donor2 | |name=Fibroblast - Choroid Plexus, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12344,LSID913,release011,COMPLETED | |profile_hcage=CNhs12344,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0372866594420768,0,-0.102062920188601,0.397463776957458,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179590257376112,0,0,0,0,0,0.337970482518268,0,0,0.61596039299053,0,0,0,0,0,0,0,0,0,0,0,0,0.0261173223007318,0.197604689528463,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.33291326772454,0,0.00559809605407402,0,0.100612328285858,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0253788387374716,0,0,0,0.135517948959169,0.083267683278851,0.0988023447642315,0.649048046595295,0,0,-0.0980353512377064,0.294309734419813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0,-0.03243082527984,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0.197604689528463,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0.649048046595295,0,0,-0.0495741857571015,0.0200949416392723,0.045046307663592,0.054089547004991,0,0,-0.042858263654138,0,0.435928378786325,0,0,0,0,0,0,0,0.0694848225758982,0,0.38551582719701,0,0,0,0,0.106171539825445,-0.305472230898407,0,-0.0078014272872398,-0.0683442610773682,0,0,0,0,0.340249045603218,0,0.0767252057347223,-0.0827201683234173,0.273803898081901,0.379692636257509,-0.055712496781182,0,0,0,0.168212724366849,0.152710171524048,0,0,-0.121779851751874,-0.181349618560659,0,0,0.618355946411242,0,0.175899232741865,0.0295358809077802,0,0.00399793960601227,0,0,0,0,0,0,0,0,0,0,0,0.392232329672537,-0.326988596678969,0,0,0,0,-0.0568277415798664,0.0253772004984482,0,0.584151734845481,0.11479080471179,0.0404269621172345,0.541672564940495,0,0.655048163792134,0.093598748038997,0.143468834543481,-0.086692647479607,0.288526529415187,0.398948452399592,0,0.0253788387374716,-0.084425725654527,-0.0521451804174391,0.062854102482015,-0.0586775505844929,0.13912051418128,-0.117813962333478,0.197604689528463,0,0.197604689528463,0.133258355112633,0,0,0.0290178119388268,0.063594699395435,0.242891741807695,0.399429118026312,0.139302568310489,0.140449249407006,0.0592698163075609,0.131493719052845,0,0.606388038087351,0,0.33291326772454,-0.00986151408125613,-0.0106225539621311,0.171525783694725,-0.282912905454139,0,0.217869441648504,-0.0683442610773682,0.091705914863565,-0.202865561000663,0.113245912216355,0,0,0.0702708157238834,0,0,0,0,0.435928378786325,-0.0998876398402944,-0.341887453501703,0.20307281723078,0,0.0437162852640828,0,0.053637371377156,0,-0.408016294611801,-0.146009897457394,0.137854226425033,0.126568261792717,0,0.0783288372337382,0.28753403307007,-0.078261998544456,0.166535366557702,0.139157862716638,0.167930208574331,0.220541720275827,0.0708409475616665,0.244282408380975,0,-0.0881268324752877,0,0.014857391831682,-0.346584863896985,0,-0.160203536167692,0.197604689528463,0.109694365858526,0,-0.175569061019574,0,-0.0143922602254555,-0.104505372686915,-0.439289374580686,-0.343343222044033,0,0.0843326939340963,0.221269590188902,0,0,0,0,0.598549899434753,-0.178563440096982,-0.211650427864589,-0.138989456679195,0,0.413512217113852,0,0,-0.13242536156751,-0.235476037764389,0.197604689528463,0.0475159250772955,-0.0202727422639569,0.0448320054000008,-0.115971073434934,0,0,0.471560826683898,0,0.435928378786325,-0.169999685031705,0.133999844390661,0.0820635795008513,-0.0557216519582928,0,0.26583568193044,0,0,0.0200769235632872,0.197604689528463,0.636699244962211,0,0,0.176141600471246,-0.0575604681902785,0,0,0,0.064300572650036,0,0,0,0,0,0,0,0.0193471874558577,0.0810950485698771,0,-0.0586894095706869,0,0,0,0,0,-0.0452864467424172,0,0,0.39025255574899,0.0930281719230975,-0.12301741567642,0,0,0,0,-0.0181187130250118,-0.00563187256626085,0,0.0657419830308312,0,0,0,0,-0.0861409897892114,0,0,0,0.0988023447642315,0.139874232474799,0.265901416853774,0,0.197604689528463,0,0.588619468839625,0,0,0,0.0230121575138913,0.0237207466265421,0,0,0,0,0.0730826182754407,0.354346499239484,0,-0.194210479641638,0.365787899745275,0.499126258329632,0,0,1.11971443944555,0,0,-0.00272204846204627,0,0,0.11909646145147,0,0,0,0,0,0,-0.0167098228712927,0.0350263755805012,0,0,0,0,0,0,0,0,0,0,-0.0295804243997548,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.0182264154632226,0,0,0.0076199614765844,0,0,0,0,0,0.0477065867523583,0,0,0,0,0,0.100612328285858,0,0,0,0,0.794927553914916,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0742856034930152,-0.102062920188601,0,0,0,0,0,0,0,-0.0772286086776276,0,0,0,0,-0.113884373708977,0,0,0,0.0928083047393065,0,0.0372866594420768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503323342409107,0,0.143765242438377,0,0,0,0.091895670664606,0,0,0,0,0,0,0.0674619207357045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0156892093593352,0,0,0,0,0,0,0,0.337970482518268,0,0,-0.0920328098005262,0,0,0,0,0,0,-0.0284105774489092,0.181240786189929,0.0250605939688044,0,0,0,-0.054385572482455,0.33291326772454,0,0.0245750705718824,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179590257376112,0,0,0,0,0,0,0,0,0,0,0,0,0.0988023447642315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197604689528463,0.569029578326657,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.197604689528463,0,0.197604689528463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.405428866950395,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0.33291326772454,0,0,0,0,0,0,0,0,0,0.435928378786325,-0.114575663729387,0,0,0,0,0.285276157063621,0,0,0,0,0,0,0.197604689528463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335319563660934,0,0,0.236002870459565,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0352253375601113,-0.03243082527984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.136759886714236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197604689528463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.422791729221141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0988023447642315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193687037443236,0,0,0,0,0,0,0,0.074908692531462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134740047813886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61596039299053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.048864362242645,0.0988023447642315,0,0,0,0,0,0,0,0,0,0.125206542334462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0491030170320994,0,0,0.155317221051347,0,0.011587668605572,-0.10481605284494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197604689528463,0,0,0,0,-0.082467405794503,0,0,0.0388536902643103,0,0.0102743011338704,0.212523373632579,0,0,0.149865028080918,0,0,-0.174992895090299,-0.202477196450138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,-0.0718709460661063,0,-0.0459229866258841,0,0,-0.102963969359615,0,0,0,-0.0959594073735869 | |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC1325 | |rna_catalog_number=SC1325 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.20E+08 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.12990586844135e-206!GO:0005737;cytoplasm;8.57059925992067e-184!GO:0043226;organelle;4.29977582860877e-158!GO:0043231;intracellular membrane-bound organelle;5.71615526263659e-158!GO:0043229;intracellular organelle;7.3678735049583e-158!GO:0043227;membrane-bound organelle;9.73659073834024e-158!GO:0044444;cytoplasmic part;3.60507147692256e-131!GO:0044422;organelle part;8.9205682870573e-115!GO:0044446;intracellular organelle part;2.53424111849683e-113!GO:0032991;macromolecular complex;7.23941700953593e-80!GO:0005515;protein binding;4.18312130429481e-79!GO:0044237;cellular metabolic process;4.87419502452268e-76!GO:0044238;primary metabolic process;3.69097979485877e-75!GO:0030529;ribonucleoprotein complex;1.55879497880663e-74!GO:0043170;macromolecule metabolic process;8.70025935229818e-67!GO:0043233;organelle lumen;3.10576103909205e-61!GO:0031974;membrane-enclosed lumen;3.10576103909205e-61!GO:0003723;RNA binding;2.73109695666159e-60!GO:0005739;mitochondrion;2.23439663337346e-58!GO:0044428;nuclear part;4.99137980252618e-54!GO:0031090;organelle membrane;4.44407194268106e-52!GO:0005634;nucleus;4.96377303086963e-50!GO:0019538;protein metabolic process;1.43077226677019e-48!GO:0005840;ribosome;1.46962982343082e-47!GO:0006412;translation;2.59672858930547e-44!GO:0044260;cellular macromolecule metabolic process;1.10143130597024e-43!GO:0044267;cellular protein metabolic process;1.00220815386446e-42!GO:0015031;protein transport;1.41112593118461e-42!GO:0003735;structural constituent of ribosome;4.95417910757664e-42!GO:0033036;macromolecule localization;1.18305303841944e-41!GO:0016043;cellular component organization and biogenesis;1.60860643479295e-41!GO:0009058;biosynthetic process;3.81692701249723e-41!GO:0045184;establishment of protein localization;7.15588986256531e-40!GO:0044429;mitochondrial part;2.3212355805832e-39!GO:0008104;protein localization;2.64869144009907e-39!GO:0043234;protein complex;2.9416269946687e-39!GO:0006396;RNA processing;1.43530995850639e-38!GO:0009059;macromolecule biosynthetic process;3.20815300329404e-37!GO:0033279;ribosomal subunit;3.59835632449489e-37!GO:0044249;cellular biosynthetic process;1.14988316043992e-36!GO:0005829;cytosol;4.97062550465703e-36!GO:0031967;organelle envelope;2.58745710773965e-35!GO:0031981;nuclear lumen;4.29573000223902e-35!GO:0031975;envelope;5.65524646405321e-35!GO:0010467;gene expression;3.45308467927713e-33!GO:0016071;mRNA metabolic process;4.41146288406088e-32!GO:0043283;biopolymer metabolic process;5.61512466878129e-32!GO:0046907;intracellular transport;2.21626588642517e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.29327332584233e-28!GO:0008380;RNA splicing;3.21145221956338e-28!GO:0006886;intracellular protein transport;9.29497659186654e-28!GO:0006397;mRNA processing;9.78209195116693e-27!GO:0005740;mitochondrial envelope;1.80156730006591e-26!GO:0065003;macromolecular complex assembly;5.99591819982881e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.77306717623154e-25!GO:0031966;mitochondrial membrane;3.07533444016818e-25!GO:0019866;organelle inner membrane;3.66527046580634e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.0665087116384e-25!GO:0005743;mitochondrial inner membrane;2.09723902838749e-23!GO:0005783;endoplasmic reticulum;3.52782563321969e-23!GO:0044445;cytosolic part;6.05938202162471e-23!GO:0022607;cellular component assembly;6.59956585283475e-23!GO:0005654;nucleoplasm;1.48622840501179e-22!GO:0012505;endomembrane system;1.49540825296343e-22!GO:0006119;oxidative phosphorylation;8.0643337823758e-22!GO:0006996;organelle organization and biogenesis;2.39103385376569e-21!GO:0005794;Golgi apparatus;6.76094344628715e-20!GO:0005681;spliceosome;1.33800154820169e-19!GO:0044451;nucleoplasm part;2.49030133144661e-19!GO:0015934;large ribosomal subunit;4.61473280271904e-19!GO:0015935;small ribosomal subunit;4.74999036117623e-19!GO:0044455;mitochondrial membrane part;5.7164677308295e-19!GO:0008134;transcription factor binding;7.5286898745474e-19!GO:0051641;cellular localization;1.4256589875333e-18!GO:0044432;endoplasmic reticulum part;1.61066736041759e-18!GO:0051649;establishment of cellular localization;1.6498536593515e-18!GO:0043228;non-membrane-bound organelle;1.74361058144924e-18!GO:0043232;intracellular non-membrane-bound organelle;1.74361058144924e-18!GO:0006457;protein folding;3.60744643628108e-18!GO:0048770;pigment granule;3.19289000569838e-17!GO:0042470;melanosome;3.19289000569838e-17!GO:0005746;mitochondrial respiratory chain;1.05893180182516e-16!GO:0016462;pyrophosphatase activity;1.11682664673383e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.58409310997347e-16!GO:0022618;protein-RNA complex assembly;1.63083539348311e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;2.22238125480755e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.7754162153893e-16!GO:0017111;nucleoside-triphosphatase activity;6.81003413507142e-16!GO:0031980;mitochondrial lumen;8.07274078311748e-16!GO:0005759;mitochondrial matrix;8.07274078311748e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;8.24685369725762e-16!GO:0044265;cellular macromolecule catabolic process;8.7944797653999e-16!GO:0006512;ubiquitin cycle;1.0849869052699e-15!GO:0016874;ligase activity;1.29075485609139e-15!GO:0044257;cellular protein catabolic process;1.56444587879976e-15!GO:0019941;modification-dependent protein catabolic process;1.80858386236878e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.80858386236878e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.60249495473997e-15!GO:0051186;cofactor metabolic process;2.65118384326899e-15!GO:0000166;nucleotide binding;3.85498307847654e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.85771897370103e-15!GO:0003954;NADH dehydrogenase activity;3.85771897370103e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.85771897370103e-15!GO:0048193;Golgi vesicle transport;4.86471200776636e-15!GO:0043285;biopolymer catabolic process;5.62496407365204e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.28320813097663e-15!GO:0000502;proteasome complex (sensu Eukaryota);9.64447348410568e-15!GO:0003676;nucleic acid binding;1.29837134899374e-14!GO:0016192;vesicle-mediated transport;1.97249915851616e-14!GO:0008135;translation factor activity, nucleic acid binding;3.63737923641772e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.72499646094418e-14!GO:0006605;protein targeting;7.09936300421767e-14!GO:0009057;macromolecule catabolic process;1.32486771824553e-13!GO:0030163;protein catabolic process;2.63423919217124e-13!GO:0044248;cellular catabolic process;3.65956335560957e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.84549552363334e-13!GO:0045271;respiratory chain complex I;3.84549552363334e-13!GO:0005747;mitochondrial respiratory chain complex I;3.84549552363334e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.19602725201829e-13!GO:0042773;ATP synthesis coupled electron transport;5.19602725201829e-13!GO:0016070;RNA metabolic process;6.16106563663574e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.08677119346071e-13!GO:0005730;nucleolus;7.42364454445429e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.26730515608861e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.32584138319997e-12!GO:0051082;unfolded protein binding;1.32584138319997e-12!GO:0005793;ER-Golgi intermediate compartment;1.34282598610325e-12!GO:0006259;DNA metabolic process;2.07109281759249e-12!GO:0005789;endoplasmic reticulum membrane;2.34273904099369e-12!GO:0006732;coenzyme metabolic process;2.36296257017976e-12!GO:0003712;transcription cofactor activity;3.1703962236505e-12!GO:0005761;mitochondrial ribosome;3.98336131522943e-12!GO:0000313;organellar ribosome;3.98336131522943e-12!GO:0043412;biopolymer modification;5.56267486622433e-12!GO:0003743;translation initiation factor activity;1.45867618354582e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;6.67898688995841e-11!GO:0000375;RNA splicing, via transesterification reactions;6.67898688995841e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.67898688995841e-11!GO:0006464;protein modification process;9.7321841447808e-11!GO:0006413;translational initiation;1.45841887319205e-10!GO:0048523;negative regulation of cellular process;1.78382560748349e-10!GO:0032553;ribonucleotide binding;2.07166598777718e-10!GO:0032555;purine ribonucleotide binding;2.07166598777718e-10!GO:0017076;purine nucleotide binding;3.04477001186686e-10!GO:0016604;nuclear body;3.04477001186686e-10!GO:0009055;electron carrier activity;5.07416886043734e-10!GO:0012501;programmed cell death;6.48875825298718e-10!GO:0031965;nuclear membrane;8.43786776627734e-10!GO:0008565;protein transporter activity;8.6699229144953e-10!GO:0042254;ribosome biogenesis and assembly;1.00610898318723e-09!GO:0006915;apoptosis;1.48273912463973e-09!GO:0006446;regulation of translational initiation;1.53379359444075e-09!GO:0005635;nuclear envelope;1.53400585725964e-09!GO:0009259;ribonucleotide metabolic process;1.86729769988512e-09!GO:0007049;cell cycle;2.98410179465795e-09!GO:0008219;cell death;3.58371984814422e-09!GO:0016265;death;3.58371984814422e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.82805914031654e-09!GO:0006366;transcription from RNA polymerase II promoter;4.02482971726645e-09!GO:0044431;Golgi apparatus part;5.02399480928868e-09!GO:0006913;nucleocytoplasmic transport;5.283484876785e-09!GO:0009150;purine ribonucleotide metabolic process;5.57838604519093e-09!GO:0005788;endoplasmic reticulum lumen;6.18289717303602e-09!GO:0043687;post-translational protein modification;6.82920887737612e-09!GO:0016887;ATPase activity;7.48195116628789e-09!GO:0048519;negative regulation of biological process;8.0648142797946e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.33701478073532e-09!GO:0006163;purine nucleotide metabolic process;1.07317110428424e-08!GO:0051169;nuclear transport;1.08800902841207e-08!GO:0008639;small protein conjugating enzyme activity;1.39299068880398e-08!GO:0016607;nuclear speck;1.47493861486383e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.72746135322237e-08!GO:0004842;ubiquitin-protein ligase activity;2.03957556850879e-08!GO:0009260;ribonucleotide biosynthetic process;2.07914227337982e-08!GO:0017038;protein import;2.90169157776953e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.90348244072123e-08!GO:0019787;small conjugating protein ligase activity;3.16671877826702e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.31971373206337e-08!GO:0006164;purine nucleotide biosynthetic process;3.54887848497175e-08!GO:0009060;aerobic respiration;3.78773111189015e-08!GO:0030120;vesicle coat;3.78773111189015e-08!GO:0030662;coated vesicle membrane;3.78773111189015e-08!GO:0044453;nuclear membrane part;4.12752946473518e-08!GO:0015986;ATP synthesis coupled proton transport;4.34596404306194e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.34596404306194e-08!GO:0009141;nucleoside triphosphate metabolic process;4.34649518370899e-08!GO:0032559;adenyl ribonucleotide binding;4.77632774510898e-08!GO:0042623;ATPase activity, coupled;5.0686924640737e-08!GO:0005524;ATP binding;5.27554393447674e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.27963351789544e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.27963351789544e-08!GO:0045333;cellular respiration;5.45311872418082e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.68528546082956e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.68528546082956e-08!GO:0048475;coated membrane;6.02673125643538e-08!GO:0030117;membrane coat;6.02673125643538e-08!GO:0030554;adenyl nucleotide binding;8.68448670387454e-08!GO:0009056;catabolic process;9.42129985065116e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.48905165063914e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.48905165063914e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.25807010118072e-07!GO:0050794;regulation of cellular process;1.34873137130685e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.79695366945902e-07!GO:0006461;protein complex assembly;2.22977590676123e-07!GO:0051188;cofactor biosynthetic process;2.3423696155201e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.34473455721197e-07!GO:0005768;endosome;3.12571344641694e-07!GO:0046034;ATP metabolic process;3.36828529882677e-07!GO:0006399;tRNA metabolic process;3.46757035977341e-07!GO:0051246;regulation of protein metabolic process;3.97480859824307e-07!GO:0016881;acid-amino acid ligase activity;4.31752473284737e-07!GO:0006754;ATP biosynthetic process;4.47117768827208e-07!GO:0006753;nucleoside phosphate metabolic process;4.47117768827208e-07!GO:0019829;cation-transporting ATPase activity;4.85529141981879e-07!GO:0003713;transcription coactivator activity;4.96837813020525e-07!GO:0045786;negative regulation of progression through cell cycle;5.37092529712444e-07!GO:0006323;DNA packaging;5.61733705577678e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.7587519434607e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.7587519434607e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.7587519434607e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.80632406442221e-07!GO:0006099;tricarboxylic acid cycle;5.91651622767587e-07!GO:0046356;acetyl-CoA catabolic process;5.91651622767587e-07!GO:0051187;cofactor catabolic process;6.10105118853631e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.12596597311589e-07!GO:0016564;transcription repressor activity;6.2019399748146e-07!GO:0016491;oxidoreductase activity;7.411776565258e-07!GO:0016563;transcription activator activity;8.90660060155527e-07!GO:0004386;helicase activity;9.11204756318753e-07!GO:0031988;membrane-bound vesicle;9.78895689280573e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.01490865936436e-06!GO:0009109;coenzyme catabolic process;1.06443337132908e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.1484479359433e-06!GO:0000139;Golgi membrane;1.15397250474097e-06!GO:0065002;intracellular protein transport across a membrane;1.30688752826117e-06!GO:0043038;amino acid activation;1.35514689193512e-06!GO:0006418;tRNA aminoacylation for protein translation;1.35514689193512e-06!GO:0043039;tRNA aminoacylation;1.35514689193512e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.63098609220755e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.76098266144039e-06!GO:0003924;GTPase activity;1.78001284069472e-06!GO:0031324;negative regulation of cellular metabolic process;1.81981079252285e-06!GO:0008026;ATP-dependent helicase activity;1.88030753749393e-06!GO:0051726;regulation of cell cycle;1.98679700120228e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.02748935657294e-06!GO:0006084;acetyl-CoA metabolic process;2.49674546185027e-06!GO:0005643;nuclear pore;2.54325506778625e-06!GO:0000074;regulation of progression through cell cycle;2.5844558700148e-06!GO:0016853;isomerase activity;3.42767465369029e-06!GO:0046930;pore complex;3.51434362977837e-06!GO:0065004;protein-DNA complex assembly;3.75397463503661e-06!GO:0005798;Golgi-associated vesicle;3.79886907950234e-06!GO:0045259;proton-transporting ATP synthase complex;4.56085979266702e-06!GO:0006364;rRNA processing;5.29713260727682e-06!GO:0005667;transcription factor complex;5.30565449926552e-06!GO:0050789;regulation of biological process;5.44475955389987e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.02956533369696e-06!GO:0022402;cell cycle process;6.20026239770924e-06!GO:0031982;vesicle;6.84754571089465e-06!GO:0006974;response to DNA damage stimulus;6.84754571089465e-06!GO:0043067;regulation of programmed cell death;6.97383774153051e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.14629485739844e-06!GO:0042981;regulation of apoptosis;7.20753037375862e-06!GO:0032446;protein modification by small protein conjugation;7.4666370230574e-06!GO:0031410;cytoplasmic vesicle;7.79189629957828e-06!GO:0009117;nucleotide metabolic process;8.06947364558558e-06!GO:0009108;coenzyme biosynthetic process;8.21522065047392e-06!GO:0016072;rRNA metabolic process;9.06135659880823e-06!GO:0051276;chromosome organization and biogenesis;9.08315730049239e-06!GO:0016567;protein ubiquitination;9.99232516127115e-06!GO:0006752;group transfer coenzyme metabolic process;9.99961141922683e-06!GO:0005770;late endosome;1.02722404329054e-05!GO:0006091;generation of precursor metabolites and energy;1.09092514079356e-05!GO:0006606;protein import into nucleus;1.13382428617747e-05!GO:0043566;structure-specific DNA binding;1.16089653300444e-05!GO:0003714;transcription corepressor activity;1.16347045704332e-05!GO:0004298;threonine endopeptidase activity;1.16677538255311e-05!GO:0051170;nuclear import;1.18358653499161e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.33818244650005e-05!GO:0044440;endosomal part;1.47651009591338e-05!GO:0010008;endosome membrane;1.47651009591338e-05!GO:0009892;negative regulation of metabolic process;1.49932616335503e-05!GO:0000245;spliceosome assembly;1.56204247298369e-05!GO:0000151;ubiquitin ligase complex;1.57253070654193e-05!GO:0043069;negative regulation of programmed cell death;1.65549098884349e-05!GO:0008654;phospholipid biosynthetic process;2.00749100662829e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.04673326369656e-05!GO:0031252;leading edge;2.04673326369656e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.19813036982129e-05!GO:0043066;negative regulation of apoptosis;2.56122352043076e-05!GO:0016481;negative regulation of transcription;2.7325555460622e-05!GO:0016568;chromatin modification;3.22631827081063e-05!GO:0045454;cell redox homeostasis;3.27283127484294e-05!GO:0016787;hydrolase activity;3.84309405299965e-05!GO:0005773;vacuole;4.13430461912934e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.28130486330274e-05!GO:0006793;phosphorus metabolic process;4.28718966844892e-05!GO:0006796;phosphate metabolic process;4.28718966844892e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.31817860220187e-05!GO:0006403;RNA localization;4.49729084884624e-05!GO:0016044;membrane organization and biogenesis;4.55416289479425e-05!GO:0003697;single-stranded DNA binding;4.56431256151853e-05!GO:0016859;cis-trans isomerase activity;4.60667667124634e-05!GO:0008361;regulation of cell size;4.70018015092751e-05!GO:0050657;nucleic acid transport;4.84993302098928e-05!GO:0051236;establishment of RNA localization;4.84993302098928e-05!GO:0050658;RNA transport;4.84993302098928e-05!GO:0006613;cotranslational protein targeting to membrane;4.96543236934459e-05!GO:0007005;mitochondrion organization and biogenesis;5.10300605879164e-05!GO:0019843;rRNA binding;5.44894192645803e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.55259760711731e-05!GO:0005762;mitochondrial large ribosomal subunit;5.75808372233575e-05!GO:0000315;organellar large ribosomal subunit;5.75808372233575e-05!GO:0016740;transferase activity;5.78035620380386e-05!GO:0030133;transport vesicle;6.26693712428635e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.73584257448672e-05!GO:0051427;hormone receptor binding;7.08146895687292e-05!GO:0006916;anti-apoptosis;7.28340320397527e-05!GO:0016310;phosphorylation;7.82315142323639e-05!GO:0016049;cell growth;8.08439054213448e-05!GO:0030867;rough endoplasmic reticulum membrane;8.35669090708453e-05!GO:0005791;rough endoplasmic reticulum;8.86898845002292e-05!GO:0048522;positive regulation of cellular process;0.000105924541844547!GO:0033116;ER-Golgi intermediate compartment membrane;0.000109608119725!GO:0009719;response to endogenous stimulus;0.000111738297020114!GO:0005581;collagen;0.000117399156017778!GO:0003724;RNA helicase activity;0.000133926354349423!GO:0006333;chromatin assembly or disassembly;0.000136995916814956!GO:0019899;enzyme binding;0.00014422086792881!GO:0035257;nuclear hormone receptor binding;0.000147698737351969!GO:0007243;protein kinase cascade;0.000156774723934822!GO:0005525;GTP binding;0.000157964652979052!GO:0006281;DNA repair;0.000178413752815084!GO:0005769;early endosome;0.000187018715235101!GO:0000278;mitotic cell cycle;0.000188345319894908!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000211036571282877!GO:0005905;coated pit;0.000232329468421149!GO:0019867;outer membrane;0.000246575240025947!GO:0008610;lipid biosynthetic process;0.000262749224578839!GO:0030029;actin filament-based process;0.000263943254534283!GO:0044262;cellular carbohydrate metabolic process;0.000295929126510869!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000298405314026956!GO:0015399;primary active transmembrane transporter activity;0.000298405314026956!GO:0001558;regulation of cell growth;0.000351579840695798!GO:0005048;signal sequence binding;0.000358491279992874!GO:0030663;COPI coated vesicle membrane;0.000358491279992874!GO:0030126;COPI vesicle coat;0.000358491279992874!GO:0000323;lytic vacuole;0.000378453622419282!GO:0005764;lysosome;0.000378453622419282!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.000395990844351604!GO:0004576;oligosaccharyl transferase activity;0.000416832860964275!GO:0030137;COPI-coated vesicle;0.000420199378589378!GO:0008250;oligosaccharyl transferase complex;0.000438903927826171!GO:0032561;guanyl ribonucleotide binding;0.000460768603848116!GO:0019001;guanyl nucleotide binding;0.000460768603848116!GO:0031968;organelle outer membrane;0.000469821018122433!GO:0043021;ribonucleoprotein binding;0.000496968144642374!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000528561422396671!GO:0051789;response to protein stimulus;0.000538557073109545!GO:0006986;response to unfolded protein;0.000538557073109545!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000593687620041824!GO:0016126;sterol biosynthetic process;0.000622321744270887!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000623491765758173!GO:0005885;Arp2/3 protein complex;0.000663144981340643!GO:0051028;mRNA transport;0.000671049820907132!GO:0000785;chromatin;0.000683625929223969!GO:0005741;mitochondrial outer membrane;0.000772535267008137!GO:0006891;intra-Golgi vesicle-mediated transport;0.000815428819176803!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000883942677343506!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000904813159277854!GO:0043623;cellular protein complex assembly;0.000956537796557773!GO:0065007;biological regulation;0.000967207885330277!GO:0000314;organellar small ribosomal subunit;0.00103063648750306!GO:0005763;mitochondrial small ribosomal subunit;0.00103063648750306!GO:0051920;peroxiredoxin activity;0.00109234848399547!GO:0007264;small GTPase mediated signal transduction;0.00110712131682461!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00110712131682461!GO:0006334;nucleosome assembly;0.00111465016868492!GO:0018196;peptidyl-asparagine modification;0.00113222671090653!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00113222671090653!GO:0007050;cell cycle arrest;0.00113340421558567!GO:0030132;clathrin coat of coated pit;0.001139311727747!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00118643288043752!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00118643288043752!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00118643288043752!GO:0008092;cytoskeletal protein binding;0.00118643288043752!GO:0046474;glycerophospholipid biosynthetic process;0.0012504966149886!GO:0016779;nucleotidyltransferase activity;0.00134354182554987!GO:0003729;mRNA binding;0.0013602309238586!GO:0051101;regulation of DNA binding;0.00138301323701984!GO:0006612;protein targeting to membrane;0.00144258233539142!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0015173795765175!GO:0045892;negative regulation of transcription, DNA-dependent;0.00154350805647541!GO:0006414;translational elongation;0.00164785201487696!GO:0043492;ATPase activity, coupled to movement of substances;0.00173484949592935!GO:0019222;regulation of metabolic process;0.00178582328725818!GO:0046467;membrane lipid biosynthetic process;0.00183889517188058!GO:0022890;inorganic cation transmembrane transporter activity;0.00191952860355435!GO:0043681;protein import into mitochondrion;0.00194983026434953!GO:0008286;insulin receptor signaling pathway;0.0020339409400752!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0020715482725236!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00210796565230309!GO:0045941;positive regulation of transcription;0.00213349221224885!GO:0045893;positive regulation of transcription, DNA-dependent;0.00218094937408042!GO:0003899;DNA-directed RNA polymerase activity;0.00232983048526868!GO:0009165;nucleotide biosynthetic process;0.00248963806079908!GO:0030027;lamellipodium;0.00253435046954381!GO:0030176;integral to endoplasmic reticulum membrane;0.00258650770087432!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00284655059249015!GO:0006695;cholesterol biosynthetic process;0.00286365988355706!GO:0048518;positive regulation of biological process;0.00286441992707192!GO:0030134;ER to Golgi transport vesicle;0.00290076883073371!GO:0030127;COPII vesicle coat;0.00294699231574512!GO:0012507;ER to Golgi transport vesicle membrane;0.00294699231574512!GO:0005694;chromosome;0.00295198179383632!GO:0031497;chromatin assembly;0.00312130120060654!GO:0006260;DNA replication;0.00321480519232699!GO:0003690;double-stranded DNA binding;0.00321752953202584!GO:0008186;RNA-dependent ATPase activity;0.00326624631209824!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00341365980997654!GO:0030659;cytoplasmic vesicle membrane;0.00342447604036719!GO:0065009;regulation of a molecular function;0.00342539909237249!GO:0016197;endosome transport;0.00344220071804808!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00346632870315489!GO:0030118;clathrin coat;0.00347691897705438!GO:0031072;heat shock protein binding;0.00355483261344656!GO:0006979;response to oxidative stress;0.00357141986943172!GO:0030658;transport vesicle membrane;0.00373503947357308!GO:0040008;regulation of growth;0.00376306567448358!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0037640246013345!GO:0044420;extracellular matrix part;0.00388955877903152!GO:0043488;regulation of mRNA stability;0.00397642767809035!GO:0043487;regulation of RNA stability;0.00397642767809035!GO:0006402;mRNA catabolic process;0.00401624627004938!GO:0009967;positive regulation of signal transduction;0.00403092930873855!GO:0051329;interphase of mitotic cell cycle;0.0041534695221766!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00421658477574646!GO:0043284;biopolymer biosynthetic process;0.00424585481638131!GO:0048487;beta-tubulin binding;0.00492711930732223!GO:0016363;nuclear matrix;0.00505191599783284!GO:0006897;endocytosis;0.00509619438071887!GO:0010324;membrane invagination;0.00509619438071887!GO:0048500;signal recognition particle;0.00521243328569852!GO:0015630;microtubule cytoskeleton;0.00522831541285313!GO:0000059;protein import into nucleus, docking;0.00598318334060377!GO:0006352;transcription initiation;0.00603323289754237!GO:0051252;regulation of RNA metabolic process;0.00612711976979835!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00625364075322499!GO:0015002;heme-copper terminal oxidase activity;0.00625364075322499!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00625364075322499!GO:0004129;cytochrome-c oxidase activity;0.00625364075322499!GO:0015992;proton transport;0.00625364075322499!GO:0006818;hydrogen transport;0.00632654441380949!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00632654441380949!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00632654441380949!GO:0030521;androgen receptor signaling pathway;0.00657640468636562!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00660751923071063!GO:0008154;actin polymerization and/or depolymerization;0.00668489806889105!GO:0008139;nuclear localization sequence binding;0.00686044724169556!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00687612497973139!GO:0016408;C-acyltransferase activity;0.00690228605490283!GO:0007010;cytoskeleton organization and biogenesis;0.00717123337259531!GO:0008047;enzyme activator activity;0.00750892451233501!GO:0005813;centrosome;0.00777781679838683!GO:0006509;membrane protein ectodomain proteolysis;0.00785709567063478!GO:0033619;membrane protein proteolysis;0.00785709567063478!GO:0007265;Ras protein signal transduction;0.0078960384460572!GO:0004004;ATP-dependent RNA helicase activity;0.00830016453267131!GO:0030041;actin filament polymerization;0.00830444655876848!GO:0007040;lysosome organization and biogenesis;0.00835982034393633!GO:0044433;cytoplasmic vesicle part;0.00863412999489956!GO:0035258;steroid hormone receptor binding;0.00866808585105021!GO:0048471;perinuclear region of cytoplasm;0.00874101853733615!GO:0033673;negative regulation of kinase activity;0.00875454488480467!GO:0006469;negative regulation of protein kinase activity;0.00875454488480467!GO:0051098;regulation of binding;0.00896667327942554!GO:0003711;transcription elongation regulator activity;0.00896667327942554!GO:0044427;chromosomal part;0.00897934532309705!GO:0005583;fibrillar collagen;0.00899324428650544!GO:0006740;NADPH regeneration;0.00899324428650544!GO:0006098;pentose-phosphate shunt;0.00899324428650544!GO:0031625;ubiquitin protein ligase binding;0.00900225334280154!GO:0031902;late endosome membrane;0.0090087732228414!GO:0016125;sterol metabolic process;0.00901865080871397!GO:0051128;regulation of cellular component organization and biogenesis;0.00903886310964238!GO:0017166;vinculin binding;0.00908442857421136!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00933054105592144!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00933054105592144!GO:0030119;AP-type membrane coat adaptor complex;0.0094864792509084!GO:0030660;Golgi-associated vesicle membrane;0.00965000643156351!GO:0051168;nuclear export;0.00980295174178861!GO:0030880;RNA polymerase complex;0.0100522634425942!GO:0006892;post-Golgi vesicle-mediated transport;0.0100737652772137!GO:0007033;vacuole organization and biogenesis;0.0103070319594799!GO:0046489;phosphoinositide biosynthetic process;0.0103691004175878!GO:0030518;steroid hormone receptor signaling pathway;0.0104097728794417!GO:0007006;mitochondrial membrane organization and biogenesis;0.0106735438490982!GO:0006595;polyamine metabolic process;0.010932054303432!GO:0051348;negative regulation of transferase activity;0.0109937921650008!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.011051683864156!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0112463834773874!GO:0045047;protein targeting to ER;0.0112463834773874!GO:0004177;aminopeptidase activity;0.0114333586732171!GO:0005869;dynactin complex;0.0116840237330692!GO:0051325;interphase;0.0118712651535081!GO:0006626;protein targeting to mitochondrion;0.0120730919902155!GO:0031901;early endosome membrane;0.0121082017056897!GO:0043407;negative regulation of MAP kinase activity;0.0122731858313867!GO:0006650;glycerophospholipid metabolic process;0.0124022741939919!GO:0009966;regulation of signal transduction;0.0124400936219094!GO:0031543;peptidyl-proline dioxygenase activity;0.012485140713632!GO:0051087;chaperone binding;0.0126713875449063!GO:0005637;nuclear inner membrane;0.0129666086053222!GO:0005815;microtubule organizing center;0.0132958091811332!GO:0006066;alcohol metabolic process;0.0133936343833435!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0135678953478391!GO:0031418;L-ascorbic acid binding;0.0139849028547929!GO:0051100;negative regulation of binding;0.0140076781669659!GO:0045334;clathrin-coated endocytic vesicle;0.0142188863894285!GO:0043022;ribosome binding;0.0143039185668367!GO:0045045;secretory pathway;0.0143700839939811!GO:0005774;vacuolar membrane;0.0143996696160227!GO:0012506;vesicle membrane;0.0146742095863399!GO:0000049;tRNA binding;0.0152339431259487!GO:0015631;tubulin binding;0.015294659134076!GO:0019752;carboxylic acid metabolic process;0.0153170735863519!GO:0008312;7S RNA binding;0.0153453812756687!GO:0006082;organic acid metabolic process;0.0155000484402966!GO:0031529;ruffle organization and biogenesis;0.0159086098222216!GO:0005684;U2-dependent spliceosome;0.0163991276341337!GO:0030131;clathrin adaptor complex;0.0164469427395511!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0164606929517532!GO:0006607;NLS-bearing substrate import into nucleus;0.0165573226665078!GO:0000209;protein polyubiquitination;0.0169500998963081!GO:0019798;procollagen-proline dioxygenase activity;0.0169574369395093!GO:0006401;RNA catabolic process;0.0173778583428143!GO:0006383;transcription from RNA polymerase III promoter;0.0177804182097706!GO:0051287;NAD binding;0.0178452318087713!GO:0016584;nucleosome positioning;0.0182703000440394!GO:0005862;muscle thin filament tropomyosin;0.0196528161382324!GO:0051301;cell division;0.0199504179562281!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0201340980869195!GO:0000428;DNA-directed RNA polymerase complex;0.0201340980869195!GO:0030145;manganese ion binding;0.0201593679777253!GO:0005096;GTPase activator activity;0.0205408367563971!GO:0048468;cell development;0.0213610666569266!GO:0001726;ruffle;0.0215831777393827!GO:0004860;protein kinase inhibitor activity;0.0220823552519431!GO:0031124;mRNA 3'-end processing;0.0224359184130464!GO:0000339;RNA cap binding;0.0224359184130464!GO:0050681;androgen receptor binding;0.0226680867666414!GO:0006778;porphyrin metabolic process;0.023034965810259!GO:0033013;tetrapyrrole metabolic process;0.023034965810259!GO:0005100;Rho GTPase activator activity;0.0233426604379217!GO:0044452;nucleolar part;0.0234032414134867!GO:0005832;chaperonin-containing T-complex;0.0249445513953364!GO:0016860;intramolecular oxidoreductase activity;0.0255056301102539!GO:0030384;phosphoinositide metabolic process;0.0255238158739187!GO:0006739;NADP metabolic process;0.0258844217154152!GO:0000082;G1/S transition of mitotic cell cycle;0.0259070628527159!GO:0003746;translation elongation factor activity;0.0260955176695211!GO:0050811;GABA receptor binding;0.0266625740687166!GO:0006839;mitochondrial transport;0.0267347886319861!GO:0006118;electron transport;0.0278133841639562!GO:0030125;clathrin vesicle coat;0.0285879372180462!GO:0030665;clathrin coated vesicle membrane;0.0285879372180462!GO:0043392;negative regulation of DNA binding;0.028890861957425!GO:0006643;membrane lipid metabolic process;0.0293996671429152!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0303119165767637!GO:0044437;vacuolar part;0.0303119165767637!GO:0030031;cell projection biogenesis;0.0303119165767637!GO:0008180;signalosome;0.030604874469614!GO:0008147;structural constituent of bone;0.0307574595700344!GO:0051539;4 iron, 4 sulfur cluster binding;0.0312813569527204!GO:0030128;clathrin coat of endocytic vesicle;0.0312966278669591!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0312966278669591!GO:0030122;AP-2 adaptor complex;0.0312966278669591!GO:0003756;protein disulfide isomerase activity;0.0316131473410712!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0316131473410712!GO:0031272;regulation of pseudopodium formation;0.0316131473410712!GO:0031269;pseudopodium formation;0.0316131473410712!GO:0031344;regulation of cell projection organization and biogenesis;0.0316131473410712!GO:0031268;pseudopodium organization and biogenesis;0.0316131473410712!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0316131473410712!GO:0031274;positive regulation of pseudopodium formation;0.0316131473410712!GO:0035035;histone acetyltransferase binding;0.0316352171730504!GO:0016407;acetyltransferase activity;0.0316653354991123!GO:0015036;disulfide oxidoreductase activity;0.0322638625080096!GO:0005586;collagen type III;0.0326311104517469!GO:0006518;peptide metabolic process;0.0328683869572811!GO:0022415;viral reproductive process;0.033299494863569!GO:0031589;cell-substrate adhesion;0.03363414526081!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0339425783390888!GO:0007160;cell-matrix adhesion;0.0346717783881906!GO:0044255;cellular lipid metabolic process;0.0346808774400839!GO:0001666;response to hypoxia;0.0347960809812423!GO:0042802;identical protein binding;0.0347960809812423!GO:0016272;prefoldin complex;0.0351363819546102!GO:0019318;hexose metabolic process;0.035673207217165!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.035673207217165!GO:0033043;regulation of organelle organization and biogenesis;0.035673207217165!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0358650674311926!GO:0008033;tRNA processing;0.0363411597648469!GO:0006376;mRNA splice site selection;0.0363411597648469!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0363411597648469!GO:0046483;heterocycle metabolic process;0.0380611706358046!GO:0031301;integral to organelle membrane;0.0383514455371905!GO:0005996;monosaccharide metabolic process;0.0385500137039339!GO:0008629;induction of apoptosis by intracellular signals;0.0385500137039339!GO:0030522;intracellular receptor-mediated signaling pathway;0.0389869535103555!GO:0031461;cullin-RING ubiquitin ligase complex;0.0396312011317957!GO:0042158;lipoprotein biosynthetic process;0.0396312011317957!GO:0007569;cell aging;0.0397187711536224!GO:0007034;vacuolar transport;0.0397364151812576!GO:0006611;protein export from nucleus;0.0398722224795658!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0400670779716498!GO:0008632;apoptotic program;0.0406760194998034!GO:0030511;positive regulation of transforming growth factor beta receptor signaling pathway;0.0408046312662152!GO:0032507;maintenance of cellular protein localization;0.0429099491645284!GO:0033559;unsaturated fatty acid metabolic process;0.0430452207245494!GO:0006636;unsaturated fatty acid biosynthetic process;0.0430452207245494!GO:0007030;Golgi organization and biogenesis;0.0431558580297547!GO:0030032;lamellipodium biogenesis;0.0431766047340324!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0431766047340324!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0431766047340324!GO:0042168;heme metabolic process;0.0431766047340324!GO:0005765;lysosomal membrane;0.0433462535147695!GO:0005811;lipid particle;0.0438539463251948!GO:0030833;regulation of actin filament polymerization;0.0440583064792304!GO:0032906;transforming growth factor-beta2 production;0.0440583064792304!GO:0032909;regulation of transforming growth factor-beta2 production;0.0440583064792304!GO:0009893;positive regulation of metabolic process;0.0441852570674525!GO:0051059;NF-kappaB binding;0.0446543119978984!GO:0050662;coenzyme binding;0.0451118609542413!GO:0050790;regulation of catalytic activity;0.0457348436301981!GO:0042987;amyloid precursor protein catabolic process;0.0460064905811313!GO:0005801;cis-Golgi network;0.0470323366716818!GO:0006516;glycoprotein catabolic process;0.0473971712112525!GO:0000087;M phase of mitotic cell cycle;0.0479816885755388!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0487326625032402!GO:0006417;regulation of translation;0.0487738473538991!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0495267751895965!GO:0010257;NADH dehydrogenase complex assembly;0.0495267751895965!GO:0033108;mitochondrial respiratory chain complex assembly;0.0495267751895965!GO:0050178;phenylpyruvate tautomerase activity;0.0495828464807805!GO:0003779;actin binding;0.0498214270021618 | |||
|sample_id=11572 | |sample_id=11572 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=choroid plexus | |sample_tissue=choroid plexus | ||
|top_motifs=NKX2-1,4:1.96621514757;NKX3-1:1.81645964099;TFAP4:1.77184511983;ATF6:1.74338232683;NANOG{mouse}:1.7129446853;TAL1_TCF{3,4,12}:1.68518628921;PAX1,9:1.3712009187;AIRE:1.3583573596;ZNF238:1.34339961642;AR:1.33772995351;SOX5:1.29267108182;HOX{A5,B5}:1.19247936892;EBF1:1.18687288503;RXR{A,B,G}:1.17650189239;MYBL2:1.17195571449;GLI1..3:1.1332765505;BPTF:1.12745075714;GTF2A1,2:1.1161850742;PATZ1:1.09330062449;NR3C1:1.09137983953;DBP:1.08143300044;ZNF384:1.04464340383;ALX4:1.03981925;GFI1B:1.03977922788;UFEwm:1.01424580113;NKX2-2,8:1.00205726976;ZIC1..3:0.967586743599;RORA:0.925737616861;PAX8:0.901076214757;TLX1..3_NFIC{dimer}:0.871500016139;NFATC1..3:0.840362634034;XBP1:0.815833845846;EN1,2:0.786073383313;HAND1,2:0.740194953047;MAZ:0.736605023253;NKX6-1,2:0.72812840038;RXRA_VDR{dimer}:0.722789795817;MYFfamily:0.711557404073;SPZ1:0.69901726412;FOXD3:0.683906073351;GTF2I:0.674000265059;HMGA1,2:0.667769772387;IKZF1:0.664451844804;LEF1_TCF7_TCF7L1,2:0.65484333688;TFAP2{A,C}:0.641891883155;TEAD1:0.634818676968;CDX1,2,4:0.615802695951;EVI1:0.611196712791;POU3F1..4:0.587007010558;NFE2L2:0.585767522543;MED-1{core}:0.569594102898;ZNF423:0.565964443529;VSX1,2:0.542311377525;GZF1:0.520757900196;STAT2,4,6:0.491557821687;FOXP3:0.486984983286;PAX4:0.471588753402;KLF4:0.467751435535;MZF1:0.46605112602;NHLH1,2:0.454189019982;TP53:0.430502106378;POU6F1:0.429327295645;LHX3,4:0.425934079493;SOX17:0.420360236439;FOXM1:0.418357162453;GFI1:0.417323091889;HOX{A4,D4}:0.411664088247;EGR1..3:0.408861183134;PRDM1:0.381179577298;T:0.374596372271;SRF:0.350957212623;GATA4:0.333525887626;NANOG:0.332211984482;HIF1A:0.319044164771;PAX5:0.302684948998;HIC1:0.297454717143;ZBTB16:0.293486771476;ZBTB6:0.280672083288;PAX3,7:0.268312683924;CRX:0.257404143355;TFCP2:0.254276436671;SOX2:0.247233262973;TEF:0.237457587437;TFAP2B:0.223472072597;NFE2L1:0.170327571805;SMAD1..7,9:0.15550821518;STAT5{A,B}:0.152210705123;HNF4A_NR2F1,2:0.144113150718;SP1:0.117499750285;TBP:0.104136683103;NR1H4:0.0973797446902;NFIL3:0.0900431333179;TLX2:0.0838688056441;ONECUT1,2:0.0838620147582;TOPORS:0.0761203207755;FOXA2:0.0748621169473;RREB1:0.0602206838986;HNF1A:0.0597966200216;HOXA9_MEIS1:0.0549570203347;MTE{core}:0.0386679576269;HLF:0.0386521139206;FOX{D1,D2}:0.031456674108;ESRRA:0.00418252081783;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0066243866013;ZFP161:-0.013782142335;FOXO1,3,4:-0.0147000194671;NKX2-3_NKX2-5:-0.0212614315636;MAFB:-0.0323689663878;ADNP_IRX_SIX_ZHX:-0.0412364296627;PAX6:-0.0523405092375;HES1:-0.0607520466203;ESR1:-0.0670355667818;CDC5L:-0.0840500576966;ARID5B:-0.0919448421646;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0941268572211;HOX{A6,A7,B6,B7}:-0.110118073467;NR6A1:-0.110576194427;YY1:-0.118489331789;GATA6:-0.124047351725;HSF1,2:-0.145633806156;NFIX:-0.150546566236;FOS_FOS{B,L1}_JUN{B,D}:-0.152274783327;BACH2:-0.162350672642;TFDP1:-0.174595443773;MEF2{A,B,C,D}:-0.178248375081;FOSL2:-0.192864974061;AHR_ARNT_ARNT2:-0.201725374969;bHLH_family:-0.20869436629;XCPE1{core}:-0.21266630869;IRF7:-0.213644588843;REST:-0.220835876031;RBPJ:-0.225584452481;ZNF148:-0.231093202651;NR5A1,2:-0.241569790878;RFX1:-0.245541047387;PAX2:-0.24921606596;GCM1,2:-0.285848241079;ETS1,2:-0.293228898311;POU1F1:-0.295846046854;FOXQ1:-0.308342104631;RUNX1..3:-0.31113738131;NFE2:-0.320045681746;HBP1_HMGB_SSRP1_UBTF:-0.326401801148;TGIF1:-0.349215531857;IRF1,2:-0.369551211021;PRRX1,2:-0.372518851787;OCT4_SOX2{dimer}:-0.379655954018;ELF1,2,4:-0.392998356561;NFKB1_REL_RELA:-0.399199888435;MTF1:-0.399586447682;POU5F1:-0.406325291708;HMX1:-0.410598686109;BREu{core}:-0.421690510803;NRF1:-0.425220575802;SPI1:-0.454888537292;CEBPA,B_DDIT3:-0.487050714841;CUX2:-0.499499686899;STAT1,3:-0.545827040215;ZNF143:-0.551139783605;POU2F1..3:-0.555223199185;DMAP1_NCOR{1,2}_SMARC:-0.572127250698;SPIB:-0.595202958155;SNAI1..3:-0.598552870134;FOX{I1,J2}:-0.604895596003;JUN:-0.616535648979;RFX2..5_RFXANK_RFXAP:-0.622251613488;PDX1:-0.626648528951;EP300:-0.645241340253;FOXL1:-0.659908527482;SOX{8,9,10}:-0.667606135673;ATF4:-0.707674711663;IKZF2:-0.713616583735;ATF5_CREB3:-0.740314135668;ALX1:-0.748361818881;FOXP1:-0.76793278511;MYB:-0.768067822273;SREBF1,2:-0.772886297554;NKX3-2:-0.776014233578;CREB1:-0.800183004115;PPARG:-0.807946494345;ELK1,4_GABP{A,B1}:-0.823701224238;FOXN1:-0.849220897491;E2F1..5:-0.853050656443;NFY{A,B,C}:-0.865645049683;ATF2:-0.883647662581;TBX4,5:-1.01825220129;FOX{F1,F2,J1}:-1.03885761669;ZEB1:-1.06209172079;PBX1:-1.14023015972;PITX1..3:-1.14093915293;MYOD1:-1.27156459016;LMO2:-1.31766761489 | |top_motifs=NKX2-1,4:1.96621514757;NKX3-1:1.81645964099;TFAP4:1.77184511983;ATF6:1.74338232683;NANOG{mouse}:1.7129446853;TAL1_TCF{3,4,12}:1.68518628921;PAX1,9:1.3712009187;AIRE:1.3583573596;ZNF238:1.34339961642;AR:1.33772995351;SOX5:1.29267108182;HOX{A5,B5}:1.19247936892;EBF1:1.18687288503;RXR{A,B,G}:1.17650189239;MYBL2:1.17195571449;GLI1..3:1.1332765505;BPTF:1.12745075714;GTF2A1,2:1.1161850742;PATZ1:1.09330062449;NR3C1:1.09137983953;DBP:1.08143300044;ZNF384:1.04464340383;ALX4:1.03981925;GFI1B:1.03977922788;UFEwm:1.01424580113;NKX2-2,8:1.00205726976;ZIC1..3:0.967586743599;RORA:0.925737616861;PAX8:0.901076214757;TLX1..3_NFIC{dimer}:0.871500016139;NFATC1..3:0.840362634034;XBP1:0.815833845846;EN1,2:0.786073383313;HAND1,2:0.740194953047;MAZ:0.736605023253;NKX6-1,2:0.72812840038;RXRA_VDR{dimer}:0.722789795817;MYFfamily:0.711557404073;SPZ1:0.69901726412;FOXD3:0.683906073351;GTF2I:0.674000265059;HMGA1,2:0.667769772387;IKZF1:0.664451844804;LEF1_TCF7_TCF7L1,2:0.65484333688;TFAP2{A,C}:0.641891883155;TEAD1:0.634818676968;CDX1,2,4:0.615802695951;EVI1:0.611196712791;POU3F1..4:0.587007010558;NFE2L2:0.585767522543;MED-1{core}:0.569594102898;ZNF423:0.565964443529;VSX1,2:0.542311377525;GZF1:0.520757900196;STAT2,4,6:0.491557821687;FOXP3:0.486984983286;PAX4:0.471588753402;KLF4:0.467751435535;MZF1:0.46605112602;NHLH1,2:0.454189019982;TP53:0.430502106378;POU6F1:0.429327295645;LHX3,4:0.425934079493;SOX17:0.420360236439;FOXM1:0.418357162453;GFI1:0.417323091889;HOX{A4,D4}:0.411664088247;EGR1..3:0.408861183134;PRDM1:0.381179577298;T:0.374596372271;SRF:0.350957212623;GATA4:0.333525887626;NANOG:0.332211984482;HIF1A:0.319044164771;PAX5:0.302684948998;HIC1:0.297454717143;ZBTB16:0.293486771476;ZBTB6:0.280672083288;PAX3,7:0.268312683924;CRX:0.257404143355;TFCP2:0.254276436671;SOX2:0.247233262973;TEF:0.237457587437;TFAP2B:0.223472072597;NFE2L1:0.170327571805;SMAD1..7,9:0.15550821518;STAT5{A,B}:0.152210705123;HNF4A_NR2F1,2:0.144113150718;SP1:0.117499750285;TBP:0.104136683103;NR1H4:0.0973797446902;NFIL3:0.0900431333179;TLX2:0.0838688056441;ONECUT1,2:0.0838620147582;TOPORS:0.0761203207755;FOXA2:0.0748621169473;RREB1:0.0602206838986;HNF1A:0.0597966200216;HOXA9_MEIS1:0.0549570203347;MTE{core}:0.0386679576269;HLF:0.0386521139206;FOX{D1,D2}:0.031456674108;ESRRA:0.00418252081783;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0066243866013;ZFP161:-0.013782142335;FOXO1,3,4:-0.0147000194671;NKX2-3_NKX2-5:-0.0212614315636;MAFB:-0.0323689663878;ADNP_IRX_SIX_ZHX:-0.0412364296627;PAX6:-0.0523405092375;HES1:-0.0607520466203;ESR1:-0.0670355667818;CDC5L:-0.0840500576966;ARID5B:-0.0919448421646;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0941268572211;HOX{A6,A7,B6,B7}:-0.110118073467;NR6A1:-0.110576194427;YY1:-0.118489331789;GATA6:-0.124047351725;HSF1,2:-0.145633806156;NFIX:-0.150546566236;FOS_FOS{B,L1}_JUN{B,D}:-0.152274783327;BACH2:-0.162350672642;TFDP1:-0.174595443773;MEF2{A,B,C,D}:-0.178248375081;FOSL2:-0.192864974061;AHR_ARNT_ARNT2:-0.201725374969;bHLH_family:-0.20869436629;XCPE1{core}:-0.21266630869;IRF7:-0.213644588843;REST:-0.220835876031;RBPJ:-0.225584452481;ZNF148:-0.231093202651;NR5A1,2:-0.241569790878;RFX1:-0.245541047387;PAX2:-0.24921606596;GCM1,2:-0.285848241079;ETS1,2:-0.293228898311;POU1F1:-0.295846046854;FOXQ1:-0.308342104631;RUNX1..3:-0.31113738131;NFE2:-0.320045681746;HBP1_HMGB_SSRP1_UBTF:-0.326401801148;TGIF1:-0.349215531857;IRF1,2:-0.369551211021;PRRX1,2:-0.372518851787;OCT4_SOX2{dimer}:-0.379655954018;ELF1,2,4:-0.392998356561;NFKB1_REL_RELA:-0.399199888435;MTF1:-0.399586447682;POU5F1:-0.406325291708;HMX1:-0.410598686109;BREu{core}:-0.421690510803;NRF1:-0.425220575802;SPI1:-0.454888537292;CEBPA,B_DDIT3:-0.487050714841;CUX2:-0.499499686899;STAT1,3:-0.545827040215;ZNF143:-0.551139783605;POU2F1..3:-0.555223199185;DMAP1_NCOR{1,2}_SMARC:-0.572127250698;SPIB:-0.595202958155;SNAI1..3:-0.598552870134;FOX{I1,J2}:-0.604895596003;JUN:-0.616535648979;RFX2..5_RFXANK_RFXAP:-0.622251613488;PDX1:-0.626648528951;EP300:-0.645241340253;FOXL1:-0.659908527482;SOX{8,9,10}:-0.667606135673;ATF4:-0.707674711663;IKZF2:-0.713616583735;ATF5_CREB3:-0.740314135668;ALX1:-0.748361818881;FOXP1:-0.76793278511;MYB:-0.768067822273;SREBF1,2:-0.772886297554;NKX3-2:-0.776014233578;CREB1:-0.800183004115;PPARG:-0.807946494345;ELK1,4_GABP{A,B1}:-0.823701224238;FOXN1:-0.849220897491;E2F1..5:-0.853050656443;NFY{A,B,C}:-0.865645049683;ATF2:-0.883647662581;TBX4,5:-1.01825220129;FOX{F1,F2,J1}:-1.03885761669;ZEB1:-1.06209172079;PBX1:-1.14023015972;PITX1..3:-1.14093915293;MYOD1:-1.27156459016;LMO2:-1.31766761489 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11572-120E6;search_select_hide=table117:FF:11572-120E6 | |||
}} | }} | ||
Latest revision as of 18:09, 4 June 2020
| Name: | Fibroblast - Choroid Plexus, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12344 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12344
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12344
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.117 |
| 10 | 10 | 0.122 |
| 100 | 100 | 0.332 |
| 101 | 101 | 0.721 |
| 102 | 102 | 0.04 |
| 103 | 103 | 0.0959 |
| 104 | 104 | 0.391 |
| 105 | 105 | 0.35 |
| 106 | 106 | 0.0674 |
| 107 | 107 | 0.0114 |
| 108 | 108 | 0.441 |
| 109 | 109 | 0.459 |
| 11 | 11 | 0.777 |
| 110 | 110 | 0.714 |
| 111 | 111 | 0.175 |
| 112 | 112 | 0.455 |
| 113 | 113 | 0.00884 |
| 114 | 114 | 0.527 |
| 115 | 115 | 0.371 |
| 116 | 116 | 0.117 |
| 117 | 117 | 0.655 |
| 118 | 118 | 0.3 |
| 119 | 119 | 0.629 |
| 12 | 12 | 0.0605 |
| 120 | 120 | 0.041 |
| 121 | 121 | 0.239 |
| 122 | 122 | 6.78954e-4 |
| 123 | 123 | 4.94644e-4 |
| 124 | 124 | 0.718 |
| 125 | 125 | 0.404 |
| 126 | 126 | 0.87 |
| 127 | 127 | 0.592 |
| 128 | 128 | 0.171 |
| 129 | 129 | 0.584 |
| 13 | 13 | 0.132 |
| 130 | 130 | 0.621 |
| 131 | 131 | 0.609 |
| 132 | 132 | 0.401 |
| 133 | 133 | 0.727 |
| 134 | 134 | 0.732 |
| 135 | 135 | 0.522 |
| 136 | 136 | 0.275 |
| 137 | 137 | 0.0708 |
| 138 | 138 | 0.651 |
| 139 | 139 | 0.425 |
| 14 | 14 | 0.493 |
| 140 | 140 | 0.844 |
| 141 | 141 | 0.834 |
| 142 | 142 | 0.599 |
| 143 | 143 | 0.415 |
| 144 | 144 | 0.272 |
| 145 | 145 | 0.36 |
| 146 | 146 | 0.459 |
| 147 | 147 | 0.0738 |
| 148 | 148 | 0.707 |
| 149 | 149 | 0.177 |
| 15 | 15 | 0.948 |
| 150 | 150 | 0.201 |
| 151 | 151 | 0.807 |
| 152 | 152 | 0.851 |
| 153 | 153 | 0.441 |
| 154 | 154 | 0.154 |
| 155 | 155 | 0.072 |
| 156 | 156 | 0.243 |
| 157 | 157 | 0.514 |
| 158 | 158 | 0.592 |
| 159 | 159 | 0.789 |
| 16 | 16 | 0.168 |
| 160 | 160 | 0.325 |
| 161 | 161 | 0.859 |
| 162 | 162 | 0.179 |
| 163 | 163 | 0.599 |
| 164 | 164 | 0.944 |
| 165 | 165 | 0.889 |
| 166 | 166 | 0.254 |
| 167 | 167 | 0.0943 |
| 168 | 168 | 0.962 |
| 169 | 169 | 0.173 |
| 17 | 17 | 0.709 |
| 18 | 18 | 0.169 |
| 19 | 19 | 0.0296 |
| 2 | 2 | 0.406 |
| 20 | 20 | 0.493 |
| 21 | 21 | 0.388 |
| 22 | 22 | 0.192 |
| 23 | 23 | 0.124 |
| 24 | 24 | 0.419 |
| 25 | 25 | 0.184 |
| 26 | 26 | 0.853 |
| 27 | 27 | 0.485 |
| 28 | 28 | 0.142 |
| 29 | 29 | 0.845 |
| 3 | 3 | 0.7 |
| 30 | 30 | 0.248 |
| 31 | 31 | 0.559 |
| 32 | 32 | 7.56546e-10 |
| 33 | 33 | 0.312 |
| 34 | 34 | 0.541 |
| 35 | 35 | 0.41 |
| 36 | 36 | 0.0292 |
| 37 | 37 | 0.962 |
| 38 | 38 | 0.866 |
| 39 | 39 | 0.422 |
| 4 | 4 | 0.37 |
| 40 | 40 | 0.0214 |
| 41 | 41 | 0.648 |
| 42 | 42 | 0.92 |
| 43 | 43 | 0.652 |
| 44 | 44 | 0.187 |
| 45 | 45 | 0.372 |
| 46 | 46 | 0.597 |
| 47 | 47 | 0.816 |
| 48 | 48 | 0.812 |
| 49 | 49 | 0.666 |
| 5 | 5 | 0.429 |
| 50 | 50 | 0.93 |
| 51 | 51 | 0.842 |
| 52 | 52 | 0.872 |
| 53 | 53 | 0.0612 |
| 54 | 54 | 0.811 |
| 55 | 55 | 0.262 |
| 56 | 56 | 0.907 |
| 57 | 57 | 0.701 |
| 58 | 58 | 0.2 |
| 59 | 59 | 0.124 |
| 6 | 6 | 0.459 |
| 60 | 60 | 0.874 |
| 61 | 61 | 0.374 |
| 62 | 62 | 0.787 |
| 63 | 63 | 0.741 |
| 64 | 64 | 0.638 |
| 65 | 65 | 0.35 |
| 66 | 66 | 0.513 |
| 67 | 67 | 0.944 |
| 68 | 68 | 0.144 |
| 69 | 69 | 0.13 |
| 7 | 7 | 0.581 |
| 70 | 70 | 0.168 |
| 71 | 71 | 0.978 |
| 72 | 72 | 0.639 |
| 73 | 73 | 0.938 |
| 74 | 74 | 0.606 |
| 75 | 75 | 0.59 |
| 76 | 76 | 0.905 |
| 77 | 77 | 0.283 |
| 78 | 78 | 0.649 |
| 79 | 79 | 0.0112 |
| 8 | 8 | 0.291 |
| 80 | 80 | 0.954 |
| 81 | 81 | 0.477 |
| 82 | 82 | 0.377 |
| 83 | 83 | 0.617 |
| 84 | 84 | 0.175 |
| 85 | 85 | 0.0186 |
| 86 | 86 | 0.991 |
| 87 | 87 | 0.0851 |
| 88 | 88 | 0.537 |
| 89 | 89 | 0.0871 |
| 9 | 9 | 0.212 |
| 90 | 90 | 0.463 |
| 91 | 91 | 0.175 |
| 92 | 92 | 0.329 |
| 93 | 93 | 0.546 |
| 94 | 94 | 0.388 |
| 95 | 95 | 0.184 |
| 96 | 96 | 0.629 |
| 97 | 97 | 0.701 |
| 98 | 98 | 0.785 |
| 99 | 99 | 0.00172 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12344
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000060 human fibroblast of choroid plexus sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002549 (fibroblast of choroid plexus)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0005629 (vascular plexus)
0002049 (vasculature)
0006876 (vasculature of organ)
0005358 (ventricle of nervous system)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001886 (choroid plexus)
0001016 (nervous system)
0004535 (cardiovascular system)
0004086 (brain ventricle)
0005282 (ventricular system of brain)
0001009 (circulatory system)
0005281 (ventricular system of central nervous system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000060 (human fibroblast of choroid plexus sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
