FF:11218-116B3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005427 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005427 | ||
|accession_numbers=CAGE;DRX008361;DRR009233;DRZ000658;DRZ002043;DRZ012008;DRZ013393 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037207;DRR041573;DRZ007215 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002195,CL:0002571 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000098 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11218-116B3 | |id=FF:11218-116B3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000098 | ||
|is_obsolete= | |||
|library_id=CNhs10845 | |||
|library_id_phase_based=2:CNhs10845 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11218 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GCCAAT.11218 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11218 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GCCAAT.11218 | |||
|name=Mesenchymal stem cells - hepatic, donor0 | |name=Mesenchymal stem cells - hepatic, donor0 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10845,LSID700,release009,COMPLETED | |profile_hcage=CNhs10845,LSID700,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0.132064901528981,-0.14276839667711,-0.216371109812452,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0212581088194468,0,0,0,0.221784792015902,0,0.0341070052609234,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.233195153867752,0,0.0909863696223222,0,0.315167280299024,0,0,0,0,0,0,0.0418174296516561,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05066622368506,0,0,0,0.0660324507644905,0,0,0.110761771372319,0.0600748750982725,0,0.132064901528981,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125411198093441,0,0,0,-0.0272218313453598,-0.0200650658891292,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=7525 | |rna_catalog_number=7525 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116B3 | |rna_tube_id=116B3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.GCCAAT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.81680411103299e-211!GO:0005737;cytoplasm;1.51231668507139e-192!GO:0043231;intracellular membrane-bound organelle;5.21326522135748e-165!GO:0043227;membrane-bound organelle;9.11968685756554e-165!GO:0043226;organelle;1.22612994766479e-163!GO:0043229;intracellular organelle;3.9082190070533e-163!GO:0044444;cytoplasmic part;7.27796680787527e-149!GO:0044422;organelle part;3.72647205011411e-120!GO:0044446;intracellular organelle part;1.23332982290089e-118!GO:0044237;cellular metabolic process;2.48932917222509e-85!GO:0044238;primary metabolic process;1.69848689970781e-84!GO:0032991;macromolecular complex;2.94847295373175e-80!GO:0030529;ribonucleoprotein complex;3.55212095117798e-75!GO:0005515;protein binding;1.48276026837589e-74!GO:0043170;macromolecule metabolic process;2.65031054445822e-71!GO:0005739;mitochondrion;7.38793140020469e-70!GO:0043233;organelle lumen;4.83046623908684e-64!GO:0031974;membrane-enclosed lumen;4.83046623908684e-64!GO:0003723;RNA binding;3.76560316244978e-57!GO:0044428;nuclear part;3.84811551645856e-54!GO:0031090;organelle membrane;2.44090186283092e-53!GO:0019538;protein metabolic process;4.63123610141674e-52!GO:0005634;nucleus;1.59422732509299e-48!GO:0009058;biosynthetic process;2.83099753024282e-48!GO:0005840;ribosome;2.83099753024282e-48!GO:0044260;cellular macromolecule metabolic process;4.19788631761712e-47!GO:0006412;translation;4.48584427036703e-46!GO:0044429;mitochondrial part;5.67105520409801e-46!GO:0044267;cellular protein metabolic process;9.49420630299128e-46!GO:0016043;cellular component organization and biogenesis;3.74493792091002e-44!GO:0044249;cellular biosynthetic process;1.7119632230563e-42!GO:0015031;protein transport;2.42811714592255e-42!GO:0003735;structural constituent of ribosome;6.2231694377866e-42!GO:0033036;macromolecule localization;8.97305297409479e-42!GO:0045184;establishment of protein localization;3.69988961747076e-39!GO:0008104;protein localization;4.71029977565436e-39!GO:0043234;protein complex;6.42081673272747e-39!GO:0006396;RNA processing;6.42081673272747e-39!GO:0005829;cytosol;7.04235779410596e-39!GO:0031967;organelle envelope;8.96426902746177e-39!GO:0009059;macromolecule biosynthetic process;1.48387760706388e-38!GO:0031975;envelope;2.12778518071466e-38!GO:0033279;ribosomal subunit;7.05660530118439e-37!GO:0031981;nuclear lumen;1.38344679778076e-33!GO:0046907;intracellular transport;2.00508634811686e-32!GO:0043283;biopolymer metabolic process;7.37082885990469e-32!GO:0016071;mRNA metabolic process;1.85168396158936e-31!GO:0010467;gene expression;3.68137782304614e-31!GO:0005740;mitochondrial envelope;2.99950397574382e-30!GO:0008380;RNA splicing;8.57210570705257e-29!GO:0031966;mitochondrial membrane;1.34040595377336e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.68303056665938e-28!GO:0065003;macromolecular complex assembly;3.97653222096997e-27!GO:0006397;mRNA processing;4.17721682317266e-27!GO:0019866;organelle inner membrane;4.40567762318886e-27!GO:0006886;intracellular protein transport;9.28789764889947e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.48939734512876e-26!GO:0005783;endoplasmic reticulum;9.16161844960116e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.62797431210528e-25!GO:0005743;mitochondrial inner membrane;1.84138004694097e-25!GO:0022607;cellular component assembly;3.78485189177379e-24!GO:0006996;organelle organization and biogenesis;7.97508059874852e-24!GO:0044445;cytosolic part;3.33696317311211e-23!GO:0012505;endomembrane system;2.58605277117793e-22!GO:0006119;oxidative phosphorylation;9.21075353820642e-22!GO:0006457;protein folding;1.12724240685024e-21!GO:0005654;nucleoplasm;4.35117537451854e-21!GO:0005681;spliceosome;2.59465408995882e-20!GO:0044432;endoplasmic reticulum part;4.2188690416882e-20!GO:0044455;mitochondrial membrane part;7.30291690045412e-20!GO:0031980;mitochondrial lumen;7.40108179803676e-20!GO:0005759;mitochondrial matrix;7.40108179803676e-20!GO:0051641;cellular localization;9.43443715138341e-20!GO:0051649;establishment of cellular localization;1.0166058549967e-19!GO:0048770;pigment granule;1.30761124401952e-19!GO:0042470;melanosome;1.30761124401952e-19!GO:0043228;non-membrane-bound organelle;1.93139912009424e-19!GO:0043232;intracellular non-membrane-bound organelle;1.93139912009424e-19!GO:0015934;large ribosomal subunit;3.12413254002775e-19!GO:0015935;small ribosomal subunit;1.2171286322648e-18!GO:0051186;cofactor metabolic process;2.83899258881357e-18!GO:0005794;Golgi apparatus;8.27402064525099e-18!GO:0044451;nucleoplasm part;1.67466597444432e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.98922320736736e-17!GO:0016462;pyrophosphatase activity;2.04227123975114e-17!GO:0000166;nucleotide binding;2.09434622315724e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;2.42890655089988e-17!GO:0022618;protein-RNA complex assembly;3.69450125770144e-17!GO:0044265;cellular macromolecule catabolic process;7.38930063013083e-17!GO:0005746;mitochondrial respiratory chain;8.55818761250102e-17!GO:0044248;cellular catabolic process;1.50615703689014e-16!GO:0017111;nucleoside-triphosphatase activity;1.70475490033173e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;7.23445490247511e-16!GO:0008134;transcription factor binding;7.68208062188779e-16!GO:0019941;modification-dependent protein catabolic process;1.58923164015788e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.58923164015788e-15!GO:0044257;cellular protein catabolic process;1.68850519589529e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.95754606394096e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.05237448851588e-15!GO:0016874;ligase activity;2.20984525506203e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.56909609200481e-15!GO:0006732;coenzyme metabolic process;3.03134300953674e-15!GO:0043285;biopolymer catabolic process;4.71281092092092e-15!GO:0009057;macromolecule catabolic process;5.47738381029035e-15!GO:0051082;unfolded protein binding;7.72078574778937e-15!GO:0008135;translation factor activity, nucleic acid binding;1.00862544708283e-14!GO:0006512;ubiquitin cycle;1.22368761700273e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.47492151968485e-14!GO:0006259;DNA metabolic process;1.9143955988666e-14!GO:0048193;Golgi vesicle transport;2.33752156742359e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.55719029706382e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.26278118955412e-14!GO:0003954;NADH dehydrogenase activity;3.26278118955412e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.26278118955412e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.2908471149838e-14!GO:0016192;vesicle-mediated transport;5.1982975364766e-14!GO:0030163;protein catabolic process;7.98232588233348e-14!GO:0006605;protein targeting;8.03283981688061e-14!GO:0005789;endoplasmic reticulum membrane;1.16716531667619e-13!GO:0005761;mitochondrial ribosome;3.00069577146542e-13!GO:0000313;organellar ribosome;3.00069577146542e-13!GO:0005730;nucleolus;4.74452230845002e-13!GO:0003676;nucleic acid binding;5.8100556213949e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.27195282507357e-13!GO:0042775;organelle ATP synthesis coupled electron transport;7.23110387151096e-13!GO:0042773;ATP synthesis coupled electron transport;7.23110387151096e-13!GO:0007049;cell cycle;7.78951699464142e-13!GO:0005793;ER-Golgi intermediate compartment;8.21487103508981e-13!GO:0032553;ribonucleotide binding;1.38800294847527e-12!GO:0032555;purine ribonucleotide binding;1.38800294847527e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.59850351541568e-12!GO:0045271;respiratory chain complex I;1.59850351541568e-12!GO:0005747;mitochondrial respiratory chain complex I;1.59850351541568e-12!GO:0017076;purine nucleotide binding;1.82754876782013e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.62026712228537e-12!GO:0009055;electron carrier activity;1.07165951934145e-11!GO:0016070;RNA metabolic process;1.77049778059862e-11!GO:0003743;translation initiation factor activity;1.98967795515537e-11!GO:0016491;oxidoreductase activity;2.34997234945047e-11!GO:0006413;translational initiation;3.47369730384955e-11!GO:0043412;biopolymer modification;4.1950607300443e-11!GO:0003712;transcription cofactor activity;1.80886056531406e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.2864926916605e-10!GO:0000375;RNA splicing, via transesterification reactions;2.2864926916605e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.2864926916605e-10!GO:0012501;programmed cell death;2.72021139661751e-10!GO:0042254;ribosome biogenesis and assembly;3.31389588300801e-10!GO:0006464;protein modification process;3.84842175782015e-10!GO:0008565;protein transporter activity;4.82766556323462e-10!GO:0006446;regulation of translational initiation;4.84162239514374e-10!GO:0048523;negative regulation of cellular process;5.53390171699526e-10!GO:0009056;catabolic process;5.76722232147163e-10!GO:0006915;apoptosis;6.93776491639023e-10!GO:0005635;nuclear envelope;1.01382393509812e-09!GO:0009259;ribonucleotide metabolic process;1.16406120008259e-09!GO:0006163;purine nucleotide metabolic process;1.34689993642639e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.21629086464166e-09!GO:0008219;cell death;2.27757609169003e-09!GO:0016265;death;2.27757609169003e-09!GO:0031965;nuclear membrane;2.80940891982337e-09!GO:0016604;nuclear body;4.60822860077651e-09!GO:0006913;nucleocytoplasmic transport;4.65001993160232e-09!GO:0006164;purine nucleotide biosynthetic process;5.03855076688903e-09!GO:0032559;adenyl ribonucleotide binding;5.40906831746013e-09!GO:0005788;endoplasmic reticulum lumen;5.83823227125212e-09!GO:0051188;cofactor biosynthetic process;5.86205558873508e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.89596495194948e-09!GO:0022402;cell cycle process;5.90731113186683e-09!GO:0009150;purine ribonucleotide metabolic process;6.02753136039849e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.42775795784808e-09!GO:0005524;ATP binding;8.22436002133953e-09!GO:0030554;adenyl nucleotide binding;8.52803285169045e-09!GO:0051169;nuclear transport;9.07573466860358e-09!GO:0045333;cellular respiration;1.01720775394523e-08!GO:0009060;aerobic respiration;1.14853417330942e-08!GO:0003924;GTPase activity;1.14853417330942e-08!GO:0043687;post-translational protein modification;1.30551295165329e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.333853016651e-08!GO:0009260;ribonucleotide biosynthetic process;1.42594965512237e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.43244409973959e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.9505843337589e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.9505843337589e-08!GO:0009141;nucleoside triphosphate metabolic process;2.03015444086487e-08!GO:0048519;negative regulation of biological process;2.08940865594403e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.13377052696743e-08!GO:0044453;nuclear membrane part;2.50820390170339e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.56107166649273e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.56107166649273e-08!GO:0006461;protein complex assembly;2.90768878344711e-08!GO:0015986;ATP synthesis coupled proton transport;3.23625850064772e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.23625850064772e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.50430389183366e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.50430389183366e-08!GO:0006366;transcription from RNA polymerase II promoter;4.77235364763116e-08!GO:0017038;protein import;6.67929783903003e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.18229816996692e-08!GO:0006974;response to DNA damage stimulus;8.36808985747382e-08!GO:0008654;phospholipid biosynthetic process;8.41222608138576e-08!GO:0008639;small protein conjugating enzyme activity;8.58368565535047e-08!GO:0009117;nucleotide metabolic process;8.98311038141787e-08!GO:0051246;regulation of protein metabolic process;9.72026755117055e-08!GO:0016887;ATPase activity;1.05566048348108e-07!GO:0051187;cofactor catabolic process;1.2246761704913e-07!GO:0042623;ATPase activity, coupled;1.25427687562218e-07!GO:0044431;Golgi apparatus part;1.29610635613762e-07!GO:0006399;tRNA metabolic process;1.29610635613762e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.29852669300175e-07!GO:0009109;coenzyme catabolic process;1.35346117932435e-07!GO:0004842;ubiquitin-protein ligase activity;1.52809197681885e-07!GO:0030120;vesicle coat;1.57562112771624e-07!GO:0030662;coated vesicle membrane;1.57562112771624e-07!GO:0019787;small conjugating protein ligase activity;1.67848957731764e-07!GO:0006099;tricarboxylic acid cycle;1.69876102149714e-07!GO:0046356;acetyl-CoA catabolic process;1.69876102149714e-07!GO:0016607;nuclear speck;1.70313768195736e-07!GO:0005768;endosome;2.0855431042869e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.11331404567905e-07!GO:0019829;cation-transporting ATPase activity;2.18010455141813e-07!GO:0003714;transcription corepressor activity;2.22340152393734e-07!GO:0050794;regulation of cellular process;2.29972020026684e-07!GO:0006091;generation of precursor metabolites and energy;3.10631294139122e-07!GO:0048475;coated membrane;3.43402413553653e-07!GO:0030117;membrane coat;3.43402413553653e-07!GO:0016853;isomerase activity;3.59964412874942e-07!GO:0009108;coenzyme biosynthetic process;3.73853670877116e-07!GO:0000278;mitotic cell cycle;3.78752458211154e-07!GO:0046034;ATP metabolic process;3.78752458211154e-07!GO:0006754;ATP biosynthetic process;4.42514284074492e-07!GO:0006753;nucleoside phosphate metabolic process;4.42514284074492e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.50801915210485e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.50801915210485e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.50801915210485e-07!GO:0000074;regulation of progression through cell cycle;4.72615818270566e-07!GO:0006084;acetyl-CoA metabolic process;5.1513204183252e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.41567632720644e-07!GO:0016564;transcription repressor activity;5.78833374907387e-07!GO:0043038;amino acid activation;6.16433863011576e-07!GO:0006418;tRNA aminoacylation for protein translation;6.16433863011576e-07!GO:0043039;tRNA aminoacylation;6.16433863011576e-07!GO:0051726;regulation of cell cycle;7.50292320119427e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;8.0217102843593e-07!GO:0031988;membrane-bound vesicle;9.07363277539103e-07!GO:0031982;vesicle;1.00298308310703e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.03436212254051e-06!GO:0006752;group transfer coenzyme metabolic process;1.03823604116267e-06!GO:0005773;vacuole;1.12472811685029e-06!GO:0065002;intracellular protein transport across a membrane;1.19983079180727e-06!GO:0008361;regulation of cell size;1.28075828153807e-06!GO:0006281;DNA repair;1.38648035387042e-06!GO:0016881;acid-amino acid ligase activity;1.39805333270101e-06!GO:0007005;mitochondrion organization and biogenesis;1.42241538312848e-06!GO:0031410;cytoplasmic vesicle;1.54364681234174e-06!GO:0051276;chromosome organization and biogenesis;1.72256163802047e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.74868678365892e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.74986415248782e-06!GO:0006364;rRNA processing;2.04732290593568e-06!GO:0006323;DNA packaging;2.08551519608613e-06!GO:0004386;helicase activity;2.17283271056266e-06!GO:0016859;cis-trans isomerase activity;2.27242933526746e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.29865359970602e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.41045575090415e-06!GO:0009719;response to endogenous stimulus;2.45781532116283e-06!GO:0016049;cell growth;2.53207854979022e-06!GO:0005525;GTP binding;2.57898286889257e-06!GO:0015980;energy derivation by oxidation of organic compounds;2.7856070409938e-06!GO:0016072;rRNA metabolic process;2.82695528595812e-06!GO:0008610;lipid biosynthetic process;2.91398289985611e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.16944769847679e-06!GO:0008026;ATP-dependent helicase activity;3.50052718520639e-06!GO:0031252;leading edge;3.50052718520639e-06!GO:0005643;nuclear pore;4.12609793662355e-06!GO:0005798;Golgi-associated vesicle;4.29363230480282e-06!GO:0043067;regulation of programmed cell death;4.3176775341993e-06!GO:0005770;late endosome;4.34813157379659e-06!GO:0042981;regulation of apoptosis;4.61314569097e-06!GO:0043069;negative regulation of programmed cell death;4.91183041088353e-06!GO:0046930;pore complex;5.04162435466137e-06!GO:0016787;hydrolase activity;5.07564786181598e-06!GO:0045786;negative regulation of progression through cell cycle;5.15589370341292e-06!GO:0016740;transferase activity;5.16273836177206e-06!GO:0031324;negative regulation of cellular metabolic process;5.43826414499046e-06!GO:0045454;cell redox homeostasis;5.49036608765156e-06!GO:0045259;proton-transporting ATP synthase complex;5.70660820856258e-06!GO:0051789;response to protein stimulus;6.33944819588055e-06!GO:0006986;response to unfolded protein;6.33944819588055e-06!GO:0050789;regulation of biological process;6.51865721942855e-06!GO:0006613;cotranslational protein targeting to membrane;7.07623349088068e-06!GO:0043066;negative regulation of apoptosis;7.43044747817529e-06!GO:0006082;organic acid metabolic process;7.80393139525443e-06!GO:0016126;sterol biosynthetic process;8.14393401593899e-06!GO:0065004;protein-DNA complex assembly;8.19583978204615e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.24417470527519e-06!GO:0019752;carboxylic acid metabolic process;8.31154063437673e-06!GO:0000139;Golgi membrane;8.66966513445926e-06!GO:0001558;regulation of cell growth;1.10959771421415e-05!GO:0004298;threonine endopeptidase activity;1.21536589868961e-05!GO:0000245;spliceosome assembly;1.23857484854096e-05!GO:0000323;lytic vacuole;1.29772478602894e-05!GO:0005764;lysosome;1.29772478602894e-05!GO:0051170;nuclear import;1.31473838444294e-05!GO:0043566;structure-specific DNA binding;1.33247539955976e-05!GO:0031968;organelle outer membrane;1.38769316084237e-05!GO:0006916;anti-apoptosis;1.41190066981211e-05!GO:0019867;outer membrane;1.60414645647975e-05!GO:0044262;cellular carbohydrate metabolic process;1.62365013489585e-05!GO:0032561;guanyl ribonucleotide binding;1.70559677133165e-05!GO:0019001;guanyl nucleotide binding;1.70559677133165e-05!GO:0032446;protein modification by small protein conjugation;1.84439216322432e-05!GO:0050657;nucleic acid transport;2.30092604693018e-05!GO:0051236;establishment of RNA localization;2.30092604693018e-05!GO:0050658;RNA transport;2.30092604693018e-05!GO:0016567;protein ubiquitination;2.32782911706211e-05!GO:0006606;protein import into nucleus;2.75748616978464e-05!GO:0006403;RNA localization;2.77619785786203e-05!GO:0003724;RNA helicase activity;2.9983437938676e-05!GO:0005791;rough endoplasmic reticulum;3.17272246500229e-05!GO:0006793;phosphorus metabolic process;3.17565909375856e-05!GO:0006796;phosphate metabolic process;3.17565909375856e-05!GO:0044440;endosomal part;3.22356174084536e-05!GO:0010008;endosome membrane;3.22356174084536e-05!GO:0030867;rough endoplasmic reticulum membrane;3.52197952644719e-05!GO:0003697;single-stranded DNA binding;3.55867530274095e-05!GO:0046474;glycerophospholipid biosynthetic process;4.33768649102458e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.38800476170675e-05!GO:0005667;transcription factor complex;5.48320065441498e-05!GO:0006333;chromatin assembly or disassembly;5.74987076808675e-05!GO:0006612;protein targeting to membrane;5.90761680991909e-05!GO:0009892;negative regulation of metabolic process;6.19742945036247e-05!GO:0005741;mitochondrial outer membrane;6.40457294040932e-05!GO:0030133;transport vesicle;6.51788626425738e-05!GO:0006695;cholesterol biosynthetic process;7.07315304056806e-05!GO:0005762;mitochondrial large ribosomal subunit;7.1797315810626e-05!GO:0000315;organellar large ribosomal subunit;7.1797315810626e-05!GO:0043623;cellular protein complex assembly;7.22251067374777e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.22251067374777e-05!GO:0000151;ubiquitin ligase complex;7.27358909752492e-05!GO:0016310;phosphorylation;7.65869900546482e-05!GO:0016568;chromatin modification;7.7717494892408e-05!GO:0003713;transcription coactivator activity;8.03246029760946e-05!GO:0046467;membrane lipid biosynthetic process;8.41331778606113e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.60174181901923e-05!GO:0016481;negative regulation of transcription;0.000112597991661789!GO:0043021;ribonucleoprotein binding;0.000120775638127769!GO:0051301;cell division;0.000121636180816135!GO:0022403;cell cycle phase;0.00012807382907115!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000162297626227236!GO:0005694;chromosome;0.000171717902589171!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000183606678746974!GO:0009165;nucleotide biosynthetic process;0.000183606678746974!GO:0006260;DNA replication;0.000187942594068153!GO:0048522;positive regulation of cellular process;0.000210257287175801!GO:0016563;transcription activator activity;0.000210731146825836!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000235030740723347!GO:0030663;COPI coated vesicle membrane;0.000239776172297646!GO:0030126;COPI vesicle coat;0.000239776172297646!GO:0015630;microtubule cytoskeleton;0.000274788110484955!GO:0005905;coated pit;0.000285540349784816!GO:0006414;translational elongation;0.000301513537174193!GO:0000314;organellar small ribosomal subunit;0.00035583817046009!GO:0005763;mitochondrial small ribosomal subunit;0.00035583817046009!GO:0043284;biopolymer biosynthetic process;0.000376136630788887!GO:0006066;alcohol metabolic process;0.000400708274461995!GO:0016779;nucleotidyltransferase activity;0.000400768304078538!GO:0051427;hormone receptor binding;0.000409465731469824!GO:0030036;actin cytoskeleton organization and biogenesis;0.000421654973001007!GO:0051028;mRNA transport;0.000460258287302077!GO:0046489;phosphoinositide biosynthetic process;0.000469742023197021!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000479127735422951!GO:0000087;M phase of mitotic cell cycle;0.000497257394882749!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.000539425836993076!GO:0004576;oligosaccharyl transferase activity;0.000555604707571504!GO:0005048;signal sequence binding;0.00057640024491045!GO:0008250;oligosaccharyl transferase complex;0.000585089568511137!GO:0030137;COPI-coated vesicle;0.000585231633489775!GO:0007067;mitosis;0.000596295249517578!GO:0005885;Arp2/3 protein complex;0.00061695970225047!GO:0044255;cellular lipid metabolic process;0.000644499002128219!GO:0043681;protein import into mitochondrion;0.000675186827596834!GO:0019899;enzyme binding;0.00069985278991185!GO:0006979;response to oxidative stress;0.000729605541576561!GO:0065007;biological regulation;0.000745871316084451!GO:0035257;nuclear hormone receptor binding;0.000767174757916271!GO:0006520;amino acid metabolic process;0.000772797577712402!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000812707196093872!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000814689208948729!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000837129578834874!GO:0016125;sterol metabolic process;0.000837129578834874!GO:0008186;RNA-dependent ATPase activity;0.000849743256657253!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000861843222402334!GO:0051920;peroxiredoxin activity;0.000870061957162054!GO:0040008;regulation of growth;0.000877504827605892!GO:0005769;early endosome;0.000919798673549357!GO:0031418;L-ascorbic acid binding;0.000939343310742159!GO:0044427;chromosomal part;0.000971738182381405!GO:0030027;lamellipodium;0.000994397112444442!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00107259916084916!GO:0000785;chromatin;0.00108699244208219!GO:0030029;actin filament-based process;0.0012153018779311!GO:0007050;cell cycle arrest;0.00121737066405201!GO:0051329;interphase of mitotic cell cycle;0.00123529010069955!GO:0018196;peptidyl-asparagine modification;0.00125574626524557!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00125574626524557!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00126407072136758!GO:0005813;centrosome;0.00130936305924178!GO:0030176;integral to endoplasmic reticulum membrane;0.00136361403741293!GO:0007243;protein kinase cascade;0.00139808909087777!GO:0006891;intra-Golgi vesicle-mediated transport;0.00139808909087777!GO:0006334;nucleosome assembly;0.00146531659903255!GO:0003690;double-stranded DNA binding;0.00151458833947134!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0015888035989258!GO:0031072;heat shock protein binding;0.00164052449380989!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00171388379864123!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00171388379864123!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00171388379864123!GO:0048500;signal recognition particle;0.00179649595055563!GO:0019843;rRNA binding;0.00180588967211608!GO:0045892;negative regulation of transcription, DNA-dependent;0.00185427167240112!GO:0003729;mRNA binding;0.00187790374022459!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00188961256955262!GO:0007264;small GTPase mediated signal transduction;0.00188961256955262!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00189791547573032!GO:0031543;peptidyl-proline dioxygenase activity;0.00192521406302681!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00218229486522887!GO:0015002;heme-copper terminal oxidase activity;0.00218229486522887!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00218229486522887!GO:0004129;cytochrome-c oxidase activity;0.00218229486522887!GO:0004004;ATP-dependent RNA helicase activity;0.00223969341660834!GO:0051287;NAD binding;0.00227054498881307!GO:0005815;microtubule organizing center;0.00227715331907549!GO:0042802;identical protein binding;0.00232238190447952!GO:0003899;DNA-directed RNA polymerase activity;0.0023471108312669!GO:0031497;chromatin assembly;0.0023997182384847!GO:0046483;heterocycle metabolic process;0.00241879003590028!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00241879003590028!GO:0015399;primary active transmembrane transporter activity;0.00241879003590028!GO:0007006;mitochondrial membrane organization and biogenesis;0.00246007546043013!GO:0048518;positive regulation of biological process;0.00260351874849356!GO:0043488;regulation of mRNA stability;0.00261086007553752!GO:0043487;regulation of RNA stability;0.00261086007553752!GO:0048471;perinuclear region of cytoplasm;0.00287166576496858!GO:0016860;intramolecular oxidoreductase activity;0.00294828172945975!GO:0006839;mitochondrial transport;0.00322941319576239!GO:0030134;ER to Golgi transport vesicle;0.00325099189218832!GO:0016044;membrane organization and biogenesis;0.00326158139231841!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00335003815662016!GO:0006950;response to stress;0.00337495408066312!GO:0007010;cytoskeleton organization and biogenesis;0.0034448958773492!GO:0016363;nuclear matrix;0.00346159524320766!GO:0006626;protein targeting to mitochondrion;0.00350772306564034!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00354846403328269!GO:0048487;beta-tubulin binding;0.00355252537526991!GO:0051325;interphase;0.00358063074119962!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00361805962240435!GO:0006740;NADPH regeneration;0.00371429421725129!GO:0006098;pentose-phosphate shunt;0.00371429421725129!GO:0065009;regulation of a molecular function;0.00376236037300669!GO:0005581;collagen;0.00385361274408566!GO:0051252;regulation of RNA metabolic process;0.00387875656442428!GO:0019798;procollagen-proline dioxygenase activity;0.00390640618274637!GO:0015631;tubulin binding;0.00414364287445405!GO:0050662;coenzyme binding;0.00424871907569011!GO:0030659;cytoplasmic vesicle membrane;0.0043085209621986!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0043195012693269!GO:0045047;protein targeting to ER;0.0043195012693269!GO:0009967;positive regulation of signal transduction;0.00434303699159679!GO:0006818;hydrogen transport;0.00440424492918178!GO:0006807;nitrogen compound metabolic process;0.0044686391718185!GO:0016197;endosome transport;0.00452612711292552!GO:0030880;RNA polymerase complex;0.00452612711292552!GO:0030132;clathrin coat of coated pit;0.00473331056127092!GO:0000049;tRNA binding;0.00475914794707363!GO:0006650;glycerophospholipid metabolic process;0.00490584593597158!GO:0015992;proton transport;0.00491821473713333!GO:0005586;collagen type III;0.00499288730156328!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00510691557189807!GO:0007040;lysosome organization and biogenesis;0.00513114752234241!GO:0051168;nuclear export;0.0052586288718405!GO:0008180;signalosome;0.00531981396639314!GO:0008312;7S RNA binding;0.00539587906981393!GO:0019222;regulation of metabolic process;0.00542081484289144!GO:0005869;dynactin complex;0.00546546540194887!GO:0045792;negative regulation of cell size;0.00557034614707821!GO:0006497;protein amino acid lipidation;0.00561801745888847!GO:0030658;transport vesicle membrane;0.00563256849863694!GO:0006739;NADP metabolic process;0.00564985911497683!GO:0001726;ruffle;0.00566113723684912!GO:0006007;glucose catabolic process;0.00573585034624729!GO:0006506;GPI anchor biosynthetic process;0.00592186110093547!GO:0042158;lipoprotein biosynthetic process;0.00595117168364104!GO:0051087;chaperone binding;0.00599138013394229!GO:0009308;amine metabolic process;0.00599138013394229!GO:0004177;aminopeptidase activity;0.00609538414922593!GO:0030521;androgen receptor signaling pathway;0.00612013937115272!GO:0019318;hexose metabolic process;0.00612122579925697!GO:0030308;negative regulation of cell growth;0.00663906133132827!GO:0030127;COPII vesicle coat;0.00674749699608497!GO:0012507;ER to Golgi transport vesicle membrane;0.00674749699608497!GO:0008092;cytoskeletal protein binding;0.00675963009161603!GO:0031902;late endosome membrane;0.00710141627392479!GO:0008139;nuclear localization sequence binding;0.00715731904279182!GO:0008632;apoptotic program;0.00715731904279182!GO:0008652;amino acid biosynthetic process;0.0074116462024325!GO:0006519;amino acid and derivative metabolic process;0.00742684468782502!GO:0006118;electron transport;0.00746499875159303!GO:0000279;M phase;0.00771466713429896!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00780281440851756!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00780281440851756!GO:0000096;sulfur amino acid metabolic process;0.00786542568278088!GO:0005996;monosaccharide metabolic process;0.00825335838865527!GO:0035258;steroid hormone receptor binding;0.00829202780785285!GO:0006505;GPI anchor metabolic process;0.00849226612655032!GO:0006720;isoprenoid metabolic process;0.00849226612655032!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0085704826281708!GO:0000428;DNA-directed RNA polymerase complex;0.0085704826281708!GO:0051128;regulation of cellular component organization and biogenesis;0.0087269845437675!GO:0030032;lamellipodium biogenesis;0.00877504267202657!GO:0003746;translation elongation factor activity;0.00877504267202657!GO:0008203;cholesterol metabolic process;0.00885627007040134!GO:0006383;transcription from RNA polymerase III promoter;0.00885627007040134!GO:0022890;inorganic cation transmembrane transporter activity;0.00891481509158331!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00894774039526782!GO:0006672;ceramide metabolic process;0.0101650090604574!GO:0007034;vacuolar transport;0.0102472889921229!GO:0007033;vacuole organization and biogenesis;0.0102472889921229!GO:0030118;clathrin coat;0.0104273183942283!GO:0033673;negative regulation of kinase activity;0.0105192562234018!GO:0006469;negative regulation of protein kinase activity;0.0105192562234018!GO:0044433;cytoplasmic vesicle part;0.0105192562234018!GO:0046519;sphingoid metabolic process;0.0105298196829784!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0105513666570283!GO:0008047;enzyme activator activity;0.0105736271391943!GO:0006643;membrane lipid metabolic process;0.0106534012837806!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0110368449224073!GO:0017166;vinculin binding;0.0110800652033887!GO:0006402;mRNA catabolic process;0.0115313293761735!GO:0030384;phosphoinositide metabolic process;0.011536483982234!GO:0048037;cofactor binding;0.0117347248429823!GO:0000339;RNA cap binding;0.0117778286715941!GO:0006790;sulfur metabolic process;0.0118219591763127!GO:0003711;transcription elongation regulator activity;0.0120156725636135!GO:0006509;membrane protein ectodomain proteolysis;0.0121296761706027!GO:0033619;membrane protein proteolysis;0.0121296761706027!GO:0006769;nicotinamide metabolic process;0.0121296761706027!GO:0030145;manganese ion binding;0.0121937611807357!GO:0006352;transcription initiation;0.0121937611807357!GO:0006595;polyamine metabolic process;0.0123100359554043!GO:0045045;secretory pathway;0.012357249342144!GO:0043492;ATPase activity, coupled to movement of substances;0.012357249342144!GO:0005774;vacuolar membrane;0.012357249342144!GO:0030041;actin filament polymerization;0.012362843181659!GO:0003756;protein disulfide isomerase activity;0.0123740803977038!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0123740803977038!GO:0016272;prefoldin complex;0.0128415908364211!GO:0016408;C-acyltransferase activity;0.0134993489030628!GO:0006629;lipid metabolic process;0.0135131935499012!GO:0051348;negative regulation of transferase activity;0.0135217474748801!GO:0005975;carbohydrate metabolic process;0.0136877676781778!GO:0043022;ribosome binding;0.0139445809594679!GO:0030660;Golgi-associated vesicle membrane;0.0140008373328672!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0141871248730075!GO:0032984;macromolecular complex disassembly;0.0141871248730075!GO:0016251;general RNA polymerase II transcription factor activity;0.0142038923834945!GO:0050811;GABA receptor binding;0.0144420114274487!GO:0051539;4 iron, 4 sulfur cluster binding;0.0147909514268423!GO:0006417;regulation of translation;0.0147909514268423!GO:0006767;water-soluble vitamin metabolic process;0.0147955804101569!GO:0006778;porphyrin metabolic process;0.0148079936106161!GO:0033013;tetrapyrrole metabolic process;0.0148079936106161!GO:0030518;steroid hormone receptor signaling pathway;0.0150774758851881!GO:0031625;ubiquitin protein ligase binding;0.0152220647677758!GO:0012506;vesicle membrane;0.015874024029303!GO:0006892;post-Golgi vesicle-mediated transport;0.0161549679329257!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0162182709065488!GO:0008234;cysteine-type peptidase activity;0.0163206379640683!GO:0005637;nuclear inner membrane;0.0163998235570047!GO:0006733;oxidoreduction coenzyme metabolic process;0.0165631149724894!GO:0051540;metal cluster binding;0.0166058843166366!GO:0051536;iron-sulfur cluster binding;0.0166058843166366!GO:0005684;U2-dependent spliceosome;0.0166106500584303!GO:0000059;protein import into nucleus, docking;0.0166106500584303!GO:0000287;magnesium ion binding;0.0166106500584303!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0171900036136692!GO:0045926;negative regulation of growth;0.0174069431108112!GO:0006749;glutathione metabolic process;0.0175497096643252!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.018309997838678!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.018309997838678!GO:0045893;positive regulation of transcription, DNA-dependent;0.0185367988501866!GO:0033559;unsaturated fatty acid metabolic process;0.0185367988501866!GO:0006636;unsaturated fatty acid biosynthetic process;0.0185367988501866!GO:0001516;prostaglandin biosynthetic process;0.0185740384469584!GO:0046457;prostanoid biosynthetic process;0.0185740384469584!GO:0006144;purine base metabolic process;0.0188151843408096!GO:0005862;muscle thin filament tropomyosin;0.0192481802799378!GO:0005832;chaperonin-containing T-complex;0.0192668681410244!GO:0031124;mRNA 3'-end processing;0.0196013504561062!GO:0031901;early endosome membrane;0.0202131186688284!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0204666300449091!GO:0009112;nucleobase metabolic process;0.0205248985892461!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0206058676043047!GO:0051101;regulation of DNA binding;0.0211479622655546!GO:0008033;tRNA processing;0.0215228597403496!GO:0035035;histone acetyltransferase binding;0.0219996529319814!GO:0043241;protein complex disassembly;0.0226534007180931!GO:0000082;G1/S transition of mitotic cell cycle;0.023064092246195!GO:0031529;ruffle organization and biogenesis;0.0236457989764938!GO:0050681;androgen receptor binding;0.0238540909884487!GO:0008286;insulin receptor signaling pathway;0.0239013410571137!GO:0030833;regulation of actin filament polymerization;0.0243884831630596!GO:0008097;5S rRNA binding;0.0249474884857473!GO:0051098;regulation of binding;0.0250093795580112!GO:0005801;cis-Golgi network;0.0251401459007792!GO:0003684;damaged DNA binding;0.0252875273652154!GO:0005819;spindle;0.025531996646048!GO:0044452;nucleolar part;0.0274973132314685!GO:0044437;vacuolar part;0.0275031499856593!GO:0006779;porphyrin biosynthetic process;0.0276945562059327!GO:0033014;tetrapyrrole biosynthetic process;0.0276945562059327!GO:0016584;nucleosome positioning;0.0276945562059327!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.028122197608399!GO:0009081;branched chain family amino acid metabolic process;0.0283916397818196!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0283916397818196!GO:0008299;isoprenoid biosynthetic process;0.0283916397818196!GO:0006401;RNA catabolic process;0.0289534160144186!GO:0030100;regulation of endocytosis;0.0294552730708444!GO:0043086;negative regulation of catalytic activity;0.0295950643554834!GO:0022411;cellular component disassembly;0.0306718063036145!GO:0006635;fatty acid beta-oxidation;0.0307185598106783!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0309988263476553!GO:0008154;actin polymerization and/or depolymerization;0.0309996414354584!GO:0045941;positive regulation of transcription;0.0318684886980475!GO:0006984;ER-nuclear signaling pathway;0.0321124518040511!GO:0043624;cellular protein complex disassembly;0.0322218707351589!GO:0048468;cell development;0.0324449623110085!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0327908563887213!GO:0006644;phospholipid metabolic process;0.0330335026002463!GO:0016971;flavin-linked sulfhydryl oxidase activity;0.0332343092734548!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0334311068124649!GO:0019362;pyridine nucleotide metabolic process;0.0334587554607839!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0335000256822471!GO:0046365;monosaccharide catabolic process;0.0335387377010585!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0335393027661379!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0335393027661379!GO:0006607;NLS-bearing substrate import into nucleus;0.034344256498914!GO:0006302;double-strand break repair;0.0346271299339706!GO:0007021;tubulin folding;0.0348714309579585!GO:0005765;lysosomal membrane;0.0358015158862416!GO:0005938;cell cortex;0.0362240633095829!GO:0030433;ER-associated protein catabolic process;0.0362240633095829!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0362240633095829!GO:0007041;lysosomal transport;0.0363207301028798!GO:0005777;peroxisome;0.0366762236197101!GO:0042579;microbody;0.0366762236197101!GO:0005099;Ras GTPase activator activity;0.0372131521695061!GO:0008168;methyltransferase activity;0.0372805405261878!GO:0030119;AP-type membrane coat adaptor complex;0.0375688255462608!GO:0005096;GTPase activator activity;0.0375688255462608!GO:0004197;cysteine-type endopeptidase activity;0.0376674452105371!GO:0006897;endocytosis;0.0377006769281468!GO:0010324;membrane invagination;0.0377006769281468!GO:0006518;peptide metabolic process;0.0378264306116697!GO:0015036;disulfide oxidoreductase activity;0.0379894552167688!GO:0006354;RNA elongation;0.0382615977104836!GO:0031301;integral to organelle membrane;0.0383642475619909!GO:0008430;selenium binding;0.0388097867304414!GO:0009116;nucleoside metabolic process;0.0390825322169618!GO:0000209;protein polyubiquitination;0.0400145451931541!GO:0006611;protein export from nucleus;0.0400145451931541!GO:0051270;regulation of cell motility;0.0401439597042772!GO:0006289;nucleotide-excision repair;0.0404879334043682!GO:0050790;regulation of catalytic activity;0.0404879334043682!GO:0001725;stress fiber;0.0405675101238345!GO:0032432;actin filament bundle;0.0405675101238345!GO:0007030;Golgi organization and biogenesis;0.0406052727277111!GO:0031371;ubiquitin conjugating enzyme complex;0.0410459662678555!GO:0042168;heme metabolic process;0.0412063196669077!GO:0004860;protein kinase inhibitor activity;0.0425445044304783!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0427686644939267!GO:0006338;chromatin remodeling;0.0435086692888026!GO:0030503;regulation of cell redox homeostasis;0.0437565978991327!GO:0005784;translocon complex;0.0439640012567216!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0450596907271291!GO:0016453;C-acetyltransferase activity;0.0451962675726813!GO:0004300;enoyl-CoA hydratase activity;0.0452301628951941!GO:0051235;maintenance of localization;0.0458114630507413!GO:0016741;transferase activity, transferring one-carbon groups;0.0468008731124639!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0468330721760168!GO:0008147;structural constituent of bone;0.0473846437714423!GO:0032507;maintenance of cellular protein localization;0.0479665655904369!GO:0006376;mRNA splice site selection;0.0484030636115185!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0484030636115185!GO:0004563;beta-N-acetylhexosaminidase activity;0.048782523290398!GO:0004448;isocitrate dehydrogenase activity;0.0489173732598936!GO:0009889;regulation of biosynthetic process;0.0493019277138011!GO:0031326;regulation of cellular biosynthetic process;0.0497515771830832!GO:0005100;Rho GTPase activator activity;0.0497594167840311!GO:0019320;hexose catabolic process;0.0498813057154265!GO:0022406;membrane docking;0.0498813057154265!GO:0048278;vesicle docking;0.0498813057154265 | |||
|sample_id=11218 | |sample_id=11218 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 105: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=TAL1_TCF{3,4,12}:1.95658673499;NKX3-1:1.87958652486;GLI1..3:1.62740616812;HSF1,2:1.59535152659;CRX:1.48725144478;TFAP4:1.48627660264;MYBL2:1.47920360068;TEF:1.47630547773;HIF1A:1.42521570733;MAFB:1.3014409649;TLX1..3_NFIC{dimer}:1.26875070174;SRF:1.20315253485;ZNF423:1.15665580652;ZNF238:1.118903115;EBF1:1.08337682418;NR3C1:1.04422480137;HAND1,2:1.03025777376;NKX2-2,8:0.980317428076;LHX3,4:0.957677583411;PAX4:0.947644740224;HOX{A5,B5}:0.904414227903;TEAD1:0.883688866807;PAX5:0.864456690297;EN1,2:0.815753467915;GTF2A1,2:0.813196691086;PATZ1:0.780687974679;HMGA1,2:0.767753679078;DBP:0.750413904447;ESR1:0.750212931285;FOX{I1,J2}:0.740658236376;RXRA_VDR{dimer}:0.736262824499;AIRE:0.730902068803;MAZ:0.719687648527;NKX2-1,4:0.673412934728;PAX6:0.672438936159;ATF6:0.665850121265;ZIC1..3:0.660834994781;NANOG:0.625151776423;TOPORS:0.623560087481;GZF1:0.605070217572;NFATC1..3:0.577625147507;FOXL1:0.576861093091;NR6A1:0.551766697763;UFEwm:0.516945837846;SOX5:0.516162363156;EVI1:0.514884441406;GTF2I:0.510471453779;ZNF384:0.504877041377;FOXA2:0.504206529404;HOX{A4,D4}:0.500498995738;AHR_ARNT_ARNT2:0.497992536613;ARID5B:0.492125877528;GFI1B:0.4835783761;IKZF1:0.473780984843;NFE2L2:0.470014833731;RORA:0.447435483066;ALX4:0.439741514692;FOX{D1,D2}:0.422269387734;AR:0.412903890546;NKX6-1,2:0.406497818829;TBP:0.396313336283;CDC5L:0.363366317356;TBX4,5:0.361632580607;NR5A1,2:0.349460617567;SMAD1..7,9:0.344615146437;RXR{A,B,G}:0.325239413834;HES1:0.323355136894;HLF:0.308712255183;SOX17:0.299109582446;NFIX:0.298113236156;MTE{core}:0.293258071327;FOXD3:0.27207520814;STAT5{A,B}:0.262588612806;HNF1A:0.262278442583;TFCP2:0.247791841909;ATF2:0.212644785018;NFE2L1:0.206133454908;FOX{F1,F2,J1}:0.194499738634;KLF4:0.190043737648;PAX8:0.178735259302;MEF2{A,B,C,D}:0.174566440202;HNF4A_NR2F1,2:0.174467995685;BPTF:0.159687336704;POU6F1:0.149197622317;TP53:0.144666380696;MYFfamily:0.144365446206;PAX3,7:0.141910720818;YY1:0.139537388176;SP1:0.133613410521;XBP1:0.125854795435;RBPJ:0.110512281345;bHLH_family:0.0691105288928;LEF1_TCF7_TCF7L1,2:0.0624693335884;CEBPA,B_DDIT3:0.0477131518704;PRRX1,2:0.0311865265136;HOXA9_MEIS1:0.0203105897946;FOXN1:0.00337273961863;CDX1,2,4:-0.000987639572994;JUN:-0.00512556539167;PAX1,9:-0.00834411382783;MZF1:-0.0196724007363;ZNF148:-0.0325128425734;NFE2:-0.0391717742254;ZBTB6:-0.0657761563217;NANOG{mouse}:-0.0687375604614;NFIL3:-0.0761425776457;XCPE1{core}:-0.0834408606532;FOXO1,3,4:-0.0905193456628;FOXM1:-0.0944223573986;GCM1,2:-0.0975855054024;NFY{A,B,C}:-0.111134798886;PRDM1:-0.11263146745;HIC1:-0.113618968857;STAT2,4,6:-0.122187487481;MYB:-0.132977791084;RFX1:-0.168504351356;FOSL2:-0.172298191355;ADNP_IRX_SIX_ZHX:-0.174414806539;GFI1:-0.185345910986;EGR1..3:-0.185833618832;REST:-0.191935616044;NFKB1_REL_RELA:-0.203408964714;FOS_FOS{B,L1}_JUN{B,D}:-0.204561393658;ELK1,4_GABP{A,B1}:-0.211229740303;GATA6:-0.213052369355;RUNX1..3:-0.214456012404;IRF1,2:-0.237331938603;ZNF143:-0.241462599126;RREB1:-0.24265259732;ZFP161:-0.246020472035;ESRRA:-0.25380999936;TFAP2B:-0.261451742183;NHLH1,2:-0.267930750075;FOXP3:-0.270403517513;TFAP2{A,C}:-0.274636239263;ATF5_CREB3:-0.278731695253;LMO2:-0.288789707284;PAX2:-0.292655708993;TGIF1:-0.296460524543;PBX1:-0.296569287412;PPARG:-0.31307742603;CREB1:-0.332751013754;NKX3-2:-0.338063554786;POU1F1:-0.34336156905;ATF4:-0.346548597516;BACH2:-0.347763555747;CUX2:-0.352727889271;MED-1{core}:-0.368584943639;FOXP1:-0.372330497798;ONECUT1,2:-0.389007899183;STAT1,3:-0.391891565131;NRF1:-0.423281518382;NR1H4:-0.426640189581;FOXQ1:-0.428137327896;POU5F1:-0.43828170125;ETS1,2:-0.465155721255;MTF1:-0.485115229623;GATA4:-0.487090914376;VSX1,2:-0.491894192913;SPIB:-0.496969669947;IRF7:-0.52004310077;TFDP1:-0.531980919656;SREBF1,2:-0.537575760673;HMX1:-0.544745882598;NKX2-3_NKX2-5:-0.554205643617;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.560915121347;ELF1,2,4:-0.592020574861;POU2F1..3:-0.601911793328;E2F1..5:-0.617739650981;HBP1_HMGB_SSRP1_UBTF:-0.622714437565;SNAI1..3:-0.626687191896;RFX2..5_RFXANK_RFXAP:-0.629169534236;SOX2:-0.62976041191;DMAP1_NCOR{1,2}_SMARC:-0.652304788828;ZEB1:-0.674207268904;EP300:-0.683421605267;SPI1:-0.701809291833;TLX2:-0.76902967996;ZBTB16:-0.785572120332;OCT4_SOX2{dimer}:-0.786294059807;SOX{8,9,10}:-0.792092837855;ALX1:-0.799574519655;BREu{core}:-0.810366458972;IKZF2:-0.825955748028;HOX{A6,A7,B6,B7}:-0.926400043713;SPZ1:-0.984917180615;PDX1:-0.99641735263;PITX1..3:-0.997284859419;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.997949090574;POU3F1..4:-1.04625596331;T:-1.20651329497;MYOD1:-1.39766096279 | |top_motifs=TAL1_TCF{3,4,12}:1.95658673499;NKX3-1:1.87958652486;GLI1..3:1.62740616812;HSF1,2:1.59535152659;CRX:1.48725144478;TFAP4:1.48627660264;MYBL2:1.47920360068;TEF:1.47630547773;HIF1A:1.42521570733;MAFB:1.3014409649;TLX1..3_NFIC{dimer}:1.26875070174;SRF:1.20315253485;ZNF423:1.15665580652;ZNF238:1.118903115;EBF1:1.08337682418;NR3C1:1.04422480137;HAND1,2:1.03025777376;NKX2-2,8:0.980317428076;LHX3,4:0.957677583411;PAX4:0.947644740224;HOX{A5,B5}:0.904414227903;TEAD1:0.883688866807;PAX5:0.864456690297;EN1,2:0.815753467915;GTF2A1,2:0.813196691086;PATZ1:0.780687974679;HMGA1,2:0.767753679078;DBP:0.750413904447;ESR1:0.750212931285;FOX{I1,J2}:0.740658236376;RXRA_VDR{dimer}:0.736262824499;AIRE:0.730902068803;MAZ:0.719687648527;NKX2-1,4:0.673412934728;PAX6:0.672438936159;ATF6:0.665850121265;ZIC1..3:0.660834994781;NANOG:0.625151776423;TOPORS:0.623560087481;GZF1:0.605070217572;NFATC1..3:0.577625147507;FOXL1:0.576861093091;NR6A1:0.551766697763;UFEwm:0.516945837846;SOX5:0.516162363156;EVI1:0.514884441406;GTF2I:0.510471453779;ZNF384:0.504877041377;FOXA2:0.504206529404;HOX{A4,D4}:0.500498995738;AHR_ARNT_ARNT2:0.497992536613;ARID5B:0.492125877528;GFI1B:0.4835783761;IKZF1:0.473780984843;NFE2L2:0.470014833731;RORA:0.447435483066;ALX4:0.439741514692;FOX{D1,D2}:0.422269387734;AR:0.412903890546;NKX6-1,2:0.406497818829;TBP:0.396313336283;CDC5L:0.363366317356;TBX4,5:0.361632580607;NR5A1,2:0.349460617567;SMAD1..7,9:0.344615146437;RXR{A,B,G}:0.325239413834;HES1:0.323355136894;HLF:0.308712255183;SOX17:0.299109582446;NFIX:0.298113236156;MTE{core}:0.293258071327;FOXD3:0.27207520814;STAT5{A,B}:0.262588612806;HNF1A:0.262278442583;TFCP2:0.247791841909;ATF2:0.212644785018;NFE2L1:0.206133454908;FOX{F1,F2,J1}:0.194499738634;KLF4:0.190043737648;PAX8:0.178735259302;MEF2{A,B,C,D}:0.174566440202;HNF4A_NR2F1,2:0.174467995685;BPTF:0.159687336704;POU6F1:0.149197622317;TP53:0.144666380696;MYFfamily:0.144365446206;PAX3,7:0.141910720818;YY1:0.139537388176;SP1:0.133613410521;XBP1:0.125854795435;RBPJ:0.110512281345;bHLH_family:0.0691105288928;LEF1_TCF7_TCF7L1,2:0.0624693335884;CEBPA,B_DDIT3:0.0477131518704;PRRX1,2:0.0311865265136;HOXA9_MEIS1:0.0203105897946;FOXN1:0.00337273961863;CDX1,2,4:-0.000987639572994;JUN:-0.00512556539167;PAX1,9:-0.00834411382783;MZF1:-0.0196724007363;ZNF148:-0.0325128425734;NFE2:-0.0391717742254;ZBTB6:-0.0657761563217;NANOG{mouse}:-0.0687375604614;NFIL3:-0.0761425776457;XCPE1{core}:-0.0834408606532;FOXO1,3,4:-0.0905193456628;FOXM1:-0.0944223573986;GCM1,2:-0.0975855054024;NFY{A,B,C}:-0.111134798886;PRDM1:-0.11263146745;HIC1:-0.113618968857;STAT2,4,6:-0.122187487481;MYB:-0.132977791084;RFX1:-0.168504351356;FOSL2:-0.172298191355;ADNP_IRX_SIX_ZHX:-0.174414806539;GFI1:-0.185345910986;EGR1..3:-0.185833618832;REST:-0.191935616044;NFKB1_REL_RELA:-0.203408964714;FOS_FOS{B,L1}_JUN{B,D}:-0.204561393658;ELK1,4_GABP{A,B1}:-0.211229740303;GATA6:-0.213052369355;RUNX1..3:-0.214456012404;IRF1,2:-0.237331938603;ZNF143:-0.241462599126;RREB1:-0.24265259732;ZFP161:-0.246020472035;ESRRA:-0.25380999936;TFAP2B:-0.261451742183;NHLH1,2:-0.267930750075;FOXP3:-0.270403517513;TFAP2{A,C}:-0.274636239263;ATF5_CREB3:-0.278731695253;LMO2:-0.288789707284;PAX2:-0.292655708993;TGIF1:-0.296460524543;PBX1:-0.296569287412;PPARG:-0.31307742603;CREB1:-0.332751013754;NKX3-2:-0.338063554786;POU1F1:-0.34336156905;ATF4:-0.346548597516;BACH2:-0.347763555747;CUX2:-0.352727889271;MED-1{core}:-0.368584943639;FOXP1:-0.372330497798;ONECUT1,2:-0.389007899183;STAT1,3:-0.391891565131;NRF1:-0.423281518382;NR1H4:-0.426640189581;FOXQ1:-0.428137327896;POU5F1:-0.43828170125;ETS1,2:-0.465155721255;MTF1:-0.485115229623;GATA4:-0.487090914376;VSX1,2:-0.491894192913;SPIB:-0.496969669947;IRF7:-0.52004310077;TFDP1:-0.531980919656;SREBF1,2:-0.537575760673;HMX1:-0.544745882598;NKX2-3_NKX2-5:-0.554205643617;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.560915121347;ELF1,2,4:-0.592020574861;POU2F1..3:-0.601911793328;E2F1..5:-0.617739650981;HBP1_HMGB_SSRP1_UBTF:-0.622714437565;SNAI1..3:-0.626687191896;RFX2..5_RFXANK_RFXAP:-0.629169534236;SOX2:-0.62976041191;DMAP1_NCOR{1,2}_SMARC:-0.652304788828;ZEB1:-0.674207268904;EP300:-0.683421605267;SPI1:-0.701809291833;TLX2:-0.76902967996;ZBTB16:-0.785572120332;OCT4_SOX2{dimer}:-0.786294059807;SOX{8,9,10}:-0.792092837855;ALX1:-0.799574519655;BREu{core}:-0.810366458972;IKZF2:-0.825955748028;HOX{A6,A7,B6,B7}:-0.926400043713;SPZ1:-0.984917180615;PDX1:-0.99641735263;PITX1..3:-0.997284859419;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.997949090574;POU3F1..4:-1.04625596331;T:-1.20651329497;MYOD1:-1.39766096279 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11218-116B3;search_select_hide=table117:FF:11218-116B3 | |||
}} | }} | ||
Latest revision as of 16:25, 3 June 2020
| Name: | Mesenchymal stem cells - hepatic, donor0 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10845 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10845
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10845
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.614 |
| 10 | 10 | 0.703 |
| 100 | 100 | 0.175 |
| 101 | 101 | 0.743 |
| 102 | 102 | 0.13 |
| 103 | 103 | 0.125 |
| 104 | 104 | 0.372 |
| 105 | 105 | 0.75 |
| 106 | 106 | 0.309 |
| 107 | 107 | 0.0933 |
| 108 | 108 | 0.529 |
| 109 | 109 | 0.644 |
| 11 | 11 | 0.524 |
| 110 | 110 | 0.723 |
| 111 | 111 | 0.514 |
| 112 | 112 | 0.63 |
| 113 | 113 | 0.582 |
| 114 | 114 | 0.394 |
| 115 | 115 | 0.296 |
| 116 | 116 | 0.236 |
| 117 | 117 | 0.8 |
| 118 | 118 | 0.57 |
| 119 | 119 | 0.604 |
| 12 | 12 | 0.464 |
| 120 | 120 | 0.61 |
| 121 | 121 | 0.264 |
| 122 | 122 | 0.0546 |
| 123 | 123 | 0.0322 |
| 124 | 124 | 0.753 |
| 125 | 125 | 0.103 |
| 126 | 126 | 0.857 |
| 127 | 127 | 0.907 |
| 128 | 128 | 0.0711 |
| 129 | 129 | 0.351 |
| 13 | 13 | 0.903 |
| 130 | 130 | 0.00992 |
| 131 | 131 | 0.121 |
| 132 | 132 | 0.417 |
| 133 | 133 | 0.73 |
| 134 | 134 | 0.391 |
| 135 | 135 | 0.625 |
| 136 | 136 | 0.903 |
| 137 | 137 | 0.272 |
| 138 | 138 | 0.155 |
| 139 | 139 | 0.127 |
| 14 | 14 | 0.512 |
| 140 | 140 | 0.136 |
| 141 | 141 | 0.495 |
| 142 | 142 | 0.368 |
| 143 | 143 | 0.692 |
| 144 | 144 | 0.336 |
| 145 | 145 | 0.719 |
| 146 | 146 | 0.235 |
| 147 | 147 | 0.431 |
| 148 | 148 | 0.555 |
| 149 | 149 | 0.00529 |
| 15 | 15 | 0.873 |
| 150 | 150 | 0.561 |
| 151 | 151 | 0.72 |
| 152 | 152 | 0.0836 |
| 153 | 153 | 0.8 |
| 154 | 154 | 0.655 |
| 155 | 155 | 0.25 |
| 156 | 156 | 0.515 |
| 157 | 157 | 0.121 |
| 158 | 158 | 0.682 |
| 159 | 159 | 0.899 |
| 16 | 16 | 0.0393 |
| 160 | 160 | 0.0738 |
| 161 | 161 | 0.792 |
| 162 | 162 | 0.064 |
| 163 | 163 | 0.069 |
| 164 | 164 | 0.118 |
| 165 | 165 | 0.79 |
| 166 | 166 | 0.137 |
| 167 | 167 | 0.278 |
| 168 | 168 | 0.54 |
| 169 | 169 | 0.0388 |
| 17 | 17 | 0.422 |
| 18 | 18 | 0.246 |
| 19 | 19 | 0.0327 |
| 2 | 2 | 0.246 |
| 20 | 20 | 0.859 |
| 21 | 21 | 0.299 |
| 22 | 22 | 0.0294 |
| 23 | 23 | 0.136 |
| 24 | 24 | 0.976 |
| 25 | 25 | 0.148 |
| 26 | 26 | 0.212 |
| 27 | 27 | 0.992 |
| 28 | 28 | 0.0754 |
| 29 | 29 | 0.274 |
| 3 | 3 | 0.45 |
| 30 | 30 | 0.705 |
| 31 | 31 | 0.148 |
| 32 | 32 | 1.68287e-17 |
| 33 | 33 | 0.889 |
| 34 | 34 | 0.537 |
| 35 | 35 | 0.368 |
| 36 | 36 | 0.521 |
| 37 | 37 | 0.262 |
| 38 | 38 | 0.997 |
| 39 | 39 | 0.125 |
| 4 | 4 | 0.485 |
| 40 | 40 | 0.588 |
| 41 | 41 | 0.0804 |
| 42 | 42 | 0.901 |
| 43 | 43 | 0.28 |
| 44 | 44 | 0.946 |
| 45 | 45 | 0.505 |
| 46 | 46 | 0.397 |
| 47 | 47 | 0.858 |
| 48 | 48 | 0.978 |
| 49 | 49 | 0.168 |
| 5 | 5 | 0.299 |
| 50 | 50 | 0.197 |
| 51 | 51 | 0.252 |
| 52 | 52 | 0.868 |
| 53 | 53 | 0.309 |
| 54 | 54 | 0.555 |
| 55 | 55 | 0.988 |
| 56 | 56 | 0.786 |
| 57 | 57 | 0.523 |
| 58 | 58 | 0.963 |
| 59 | 59 | 0.232 |
| 6 | 6 | 0.686 |
| 60 | 60 | 0.956 |
| 61 | 61 | 0.585 |
| 62 | 62 | 0.839 |
| 63 | 63 | 0.161 |
| 64 | 64 | 0.935 |
| 65 | 65 | 0.141 |
| 66 | 66 | 0.988 |
| 67 | 67 | 0.223 |
| 68 | 68 | 0.474 |
| 69 | 69 | 0.297 |
| 7 | 7 | 0.778 |
| 70 | 70 | 0.906 |
| 71 | 71 | 0.122 |
| 72 | 72 | 0.78 |
| 73 | 73 | 0.137 |
| 74 | 74 | 0.636 |
| 75 | 75 | 0.667 |
| 76 | 76 | 0.954 |
| 77 | 77 | 0.0107 |
| 78 | 78 | 0.502 |
| 79 | 79 | 0.275 |
| 8 | 8 | 0.11 |
| 80 | 80 | 0.61 |
| 81 | 81 | 0.831 |
| 82 | 82 | 0.93 |
| 83 | 83 | 0.0677 |
| 84 | 84 | 0.353 |
| 85 | 85 | 0.008 |
| 86 | 86 | 0.74 |
| 87 | 87 | 0.642 |
| 88 | 88 | 0.218 |
| 89 | 89 | 0.131 |
| 9 | 9 | 0.391 |
| 90 | 90 | 0.51 |
| 91 | 91 | 0.902 |
| 92 | 92 | 0.216 |
| 93 | 93 | 0.153 |
| 94 | 94 | 0.985 |
| 95 | 95 | 0.447 |
| 96 | 96 | 0.447 |
| 97 | 97 | 0.386 |
| 98 | 98 | 0.463 |
| 99 | 99 | 0.00828 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10845
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000098 human hepatic mesenchymal stem cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002195 (hepatic stem cell)
0002571 (hepatic mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000098 (human hepatic mesenchymal stem cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
