FF:11317-117D3: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (26 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005386 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005386 | ||
|accession_numbers=CAGE;DRX008224;DRR009096;DRZ000521;DRZ001906;DRZ011871;DRZ013256 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037043;DRR041409;DRZ007051 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000049 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor2.CNhs11901.11317-117D3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor2.CNhs11901.11317-117D3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor2.CNhs11901.11317-117D3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor2.CNhs11901.11317-117D3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor2.CNhs11901.11317-117D3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11317-117D3 | |id=FF:11317-117D3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000049 | ||
|is_obsolete= | |||
|library_id=CNhs11901 | |||
|library_id_phase_based=2:CNhs11901 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11317 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.AGTCAA.11317 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11317 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.AGTCAA.11317 | |||
|name=Endothelial Cells - Lymphatic, donor2 | |name=Endothelial Cells - Lymphatic, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11901,LSID834,release010,COMPLETED | |profile_hcage=CNhs11901,LSID834,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.066092411293831,0,0,0,0,0.0730671266483794,0,-0.0439769754587485,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0800621463863379,0,0,0,0.400924511941115,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.132184822587662,0,-0.0411919862660368,0,0,0,0,0,0,0,0,0.15856996854838,0,0,0,0,0,0.0048031035228244,0.132184822587662,-0.0969923612426051,0,0,0.136041529521669,0,0,0,0,0,0,0,0,0.132184822587662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132184822587662,0,0,0,-0.0432848753665456,0.286491986527987,0.066092411293831,0,0.066092411293831,0,0.0341494713499552,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0358112286652009,0,0,0,0.0201219771811736,0.242467448865476,0,0,-0.0364132912814638,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0341494713499552,0,0,0,0,0,0,0,0,0,0,0,0.196683308818717,0,0.453853154862847,-0.143515142523472,0,0,0.0397378363253752,0,0.233385156734766,0,0,0,0,0,0,0,0.00406495563509693,0,-0.0504125515893149,0,0,0,0,0,0.279551739957028,0,-0.057565482782127,-0.0683442610773682,0,0,0,0,0.00415353404917635,0,0.194523766238495,-0.0827201683234173,0,-0.043795024941696,0.0421679572437132,0,0,0,0.17910624967245,-0.26825936569245,0,0,-0.121779851751874,-0.181349618560659,0,0,1.9438886171403,0,0.338308908495741,0.432020949041847,0,-0.111316096731065,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.116873587425313,0,0,0,0,-0.0672899700075438,0.132184822587662,0,0.285456018175911,0.00385528365212218,-0.0165143092667447,-0.480332996542518,0,0.447729820690525,0.125602212845733,0.691256382476802,-0.219331134604222,0.085983307363627,-0.189981719549847,0.0835321225842083,0.0831603453950007,0.526901369111377,0,0.0366252971333543,-0.084221194942113,0.360401444272014,0.0390415744399861,0,0,0.0546758961083585,0.214331302260531,0,0,0.0060670789551891,-0.134163741146359,0.026675259056356,-0.290141757548641,-0.0965752520177705,-0.089962033259252,-0.0395325284566706,0.0854342476872733,0,-0.129060339475982,0,0,0,0.0803172658427151,0.0396607113941341,-0.615826173178679,0,-0.0996123882425333,-0.0683442610773682,0.132184822587662,0.0251968977482808,-0.0403043022887772,0.132184822587662,0,-0.0825954374394493,0,0,0,0,0,-0.0184560052737024,0.119250031102311,0.000529595179220715,0,0.0113907322392873,0.119737867388138,-0.0491951836366052,0,-0.0671906454053625,-0.0138250748697326,0,0.0679342537880026,0,0.105546513667049,0.105187154934116,0.147349144985643,0.572983973055973,-0.0584468268118252,-0.145447962920295,0.0133636318427102,0.243366873880057,0.174026938854162,0.00787712599424813,0.951741386890574,0,0.492466905821387,-0.547313309033863,-0.00160590336373539,0.352925257640519,0,0.2035149131898,0,-0.0776893908773167,0,0.212913062405035,0.00243694911062786,-0.205904217845921,-0.0430890618951598,0,0.0647162524868612,0.855792473747812,0,0,0.0327833390424838,0,0.233997990233808,-0.112671995657147,-0.145558016570758,0.467440666437169,0,0.189394931108304,0,0,-0.0356014681276655,-0.235476037764389,0.132184822587662,0.380305822637493,0.0495392599190811,0.197632982686935,0.199432176597302,0,0,-0.261335264424277,0,0,0.37354702567993,0.063923261015428,0.228284202244823,-0.253326341486756,0.215719282241561,-0.108622809454255,0,0,-0.045342943377514,0,-0.177405557529208,0,0,0.0245129067846771,0,0,0,0,0,0.132184822587662,0,0,0,0,0,0,-0.171563232328267,-0.121448173481682,0,0.000117379220665459,0,0,0,0,0,0.103979041518421,0,0,0.322090113482456,0,-0.12301741567642,0.066092411293831,0,0,0,-0.083538579965813,-0.0710517395070621,0,-0.131862706497632,0,0,0.132184822587662,0,0.0460438327984503,0,0,0,0,0.175654699681102,-0.145268712794457,0,0,0,-0.27695440160179,0,0,0,0,0.0661121251306906,0,0,0,0,-0.0142247451798208,-0.0815818795468414,0,-0.369542072752111,0.033937528033761,0.442424548087186,0,0,0.234834661642075,0,0.0317086959898762,-0.0729775179888589,0,0,-0.0209247759461169,0,0,0,0,0,0.132184822587662,-0.082129689812094,0.0116386939547035,0,0,0,0,0.585023970855436,0,0,0,0,0,0.0530425392366527,-0.0922240566585104,0,0,0,0,0,0,0,0.158678966582311,-0.314207340595325,0,0,0,0,0,0.132184822587662,0,0,0.0247558537687206,0,0,0,0,0,-0.0969923612426051,0,0,0,0.132184822587662,-0.564807121153884,0,0,-0.0439769754587485,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00886573655221388,0.0767885514724493,0,0,0,0,0,0,0,-0.142648475618429,0,0,0,0,-0.113884373708977,0,0,0,0.518648951948168,0,0.0730671266483794,0,0,0,0,0,0.132184822587662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540708320549232,0,-0.0312583970755611,0.0753258764250625,0,0,-0.040445815848818,0,0,0,0,0,0,0.0347519872653037,0.0734691707718301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.066092411293831,-0.0518787679161539,0,0,0,0,1.32062210168456,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.100400173339672,0.0048031035228244,0.0962948738792236,0,0,0,0.238126412945263,0,0,0,0.132184822587662,0.518246583436534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0800621463863379,0,0,0,0,0,0,0,0,0.066092411293831,0,0,0,0.116692578367383,0,0,0,0,0,0,0,0,0,0,0,0,0.132184822587662,0,0,0,0,0,0,0,0,0,0.0320810480184143,0.132184822587662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0210637933819472,0,0,0,0,0,0,0,0,0.132184822587662,0,0.00138596462360084,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.0231058337372394,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.121425785700843,0,0,-0.00384517071314264,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0.132184822587662,0,0,0,0.184955114509097,0,0,0,0,0,0,0,0,1.20254779097488,0,0.132184822587662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0599559085069448,0.242467448865476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15063622172534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162485614411548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80184902388223,0,0,0,0,0,0,0,0,0,0,0,0.132184822587662,0,0,0,0,0,0,0.342570384894785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132184822587662,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0605623652572603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.066092411293831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.064694677765634,0,0,0,0,0,0,0,0.261669076571447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0423526277762689,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0343758252454475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235661251367258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136041529521669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171993109530554,0,0,0,0,0,0,0,0,0,0,0.0248423197660235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.40003316747306,0,0,-0.0422874684771159,0,-0.000929514404458555,0,0,0,0,0,0,-0.00899916362113175,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0712460911300635,0,0,0,0,0,0,0.132184822587662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163790088781316,0,-0.120920794925211,-0.264889865934353,0,0,-0.127692498806097,0,-0.0292619644095103,-0.0367311208382308,0,0,-0.174992895090299,-0.529409285046985,0,0,0,0,0,0,0,0,0,0.750119547700438,0,0,0,0,0,0,0,0,-0.0568589461625992,-0.0360904788598037,0,-0.145451097615658,0,0,-0.16146083395404,0,0,0,-0.0959594073735869 | |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC2015 | |rna_catalog_number=SC2015 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117D3 | |rna_tube_id=117D3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.AGTCAA | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.39713736439504e-226!GO:0005737;cytoplasm;8.54638735761804e-183!GO:0043226;organelle;3.30577490856841e-177!GO:0043229;intracellular organelle;1.02677210674008e-176!GO:0043231;intracellular membrane-bound organelle;7.1794474999835e-173!GO:0043227;membrane-bound organelle;9.7976678030531e-173!GO:0044444;cytoplasmic part;1.58980421409307e-130!GO:0044422;organelle part;2.46215754478993e-121!GO:0044446;intracellular organelle part;1.02856278746737e-119!GO:0044238;primary metabolic process;6.03711568109805e-81!GO:0005515;protein binding;1.14980421888553e-79!GO:0044237;cellular metabolic process;3.77401700112752e-79!GO:0032991;macromolecular complex;5.32179460098827e-79!GO:0043170;macromolecule metabolic process;2.15177965829965e-76!GO:0030529;ribonucleoprotein complex;1.73416304954132e-66!GO:0005634;nucleus;6.95458269002492e-63!GO:0043233;organelle lumen;7.56999386982715e-63!GO:0031974;membrane-enclosed lumen;7.56999386982715e-63!GO:0044428;nuclear part;1.07222154776639e-61!GO:0003723;RNA binding;2.71591248061424e-61!GO:0005739;mitochondrion;3.09103011374118e-55!GO:0019538;protein metabolic process;4.52180708449322e-52!GO:0031090;organelle membrane;4.52180708449322e-52!GO:0016043;cellular component organization and biogenesis;8.30516175672686e-46!GO:0044260;cellular macromolecule metabolic process;8.30516175672686e-46!GO:0033036;macromolecule localization;1.26877134212747e-45!GO:0015031;protein transport;1.34255541920939e-45!GO:0044267;cellular protein metabolic process;1.34255541920939e-45!GO:0043283;biopolymer metabolic process;3.10587523694444e-43!GO:0045184;establishment of protein localization;1.97490605476938e-42!GO:0008104;protein localization;5.39585275551757e-42!GO:0043234;protein complex;1.17955938062646e-40!GO:0006396;RNA processing;1.37760841401082e-39!GO:0005840;ribosome;1.37534569051226e-38!GO:0031981;nuclear lumen;2.68960094145199e-38!GO:0006412;translation;8.656860744688e-38!GO:0044429;mitochondrial part;7.19825969090654e-37!GO:0031967;organelle envelope;1.28078773222399e-36!GO:0031975;envelope;2.97998208540197e-36!GO:0005829;cytosol;5.56970270167621e-36!GO:0046907;intracellular transport;3.94434801667373e-35!GO:0010467;gene expression;1.30828890847921e-34!GO:0003735;structural constituent of ribosome;1.33185207873122e-33!GO:0016071;mRNA metabolic process;3.41060748278282e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.22069450189907e-32!GO:0009058;biosynthetic process;1.58046173398426e-30!GO:0008380;RNA splicing;4.45966528051374e-30!GO:0009059;macromolecule biosynthetic process;7.11823426803456e-30!GO:0033279;ribosomal subunit;1.72662957976718e-29!GO:0006886;intracellular protein transport;5.51325207878372e-29!GO:0006397;mRNA processing;5.18415041204203e-28!GO:0006996;organelle organization and biogenesis;2.39184545169207e-27!GO:0044249;cellular biosynthetic process;3.40054988375512e-27!GO:0065003;macromolecular complex assembly;1.14715139371781e-26!GO:0000166;nucleotide binding;3.97358891354975e-25!GO:0005740;mitochondrial envelope;6.45269843502814e-25!GO:0005654;nucleoplasm;1.02454874189253e-24!GO:0022607;cellular component assembly;3.56280635325637e-24!GO:0043228;non-membrane-bound organelle;6.02516765622217e-24!GO:0043232;intracellular non-membrane-bound organelle;6.02516765622217e-24!GO:0012505;endomembrane system;6.89480612220981e-24!GO:0051649;establishment of cellular localization;7.90961647046182e-24!GO:0051641;cellular localization;9.42861813160972e-24!GO:0031966;mitochondrial membrane;1.15155663049487e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.80777891781132e-23!GO:0019866;organelle inner membrane;2.96399760509903e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.71242179595476e-22!GO:0016462;pyrophosphatase activity;3.73882562274443e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.12272912399305e-21!GO:0005681;spliceosome;5.04646395810051e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;6.10874298022758e-21!GO:0006119;oxidative phosphorylation;1.46971137707061e-20!GO:0017111;nucleoside-triphosphatase activity;1.87959065423915e-20!GO:0005743;mitochondrial inner membrane;1.9221274649245e-20!GO:0044451;nucleoplasm part;2.16574367617374e-20!GO:0005783;endoplasmic reticulum;2.29239464893826e-20!GO:0016192;vesicle-mediated transport;3.78645391195644e-20!GO:0044445;cytosolic part;2.88618630780251e-19!GO:0005794;Golgi apparatus;3.10832628342186e-19!GO:0032553;ribonucleotide binding;7.51587953092452e-19!GO:0032555;purine ribonucleotide binding;7.51587953092452e-19!GO:0006512;ubiquitin cycle;1.32297190581265e-18!GO:0006457;protein folding;2.12110366297611e-18!GO:0006259;DNA metabolic process;2.31967780639536e-18!GO:0043412;biopolymer modification;2.84991321902641e-18!GO:0017076;purine nucleotide binding;3.27900681413786e-18!GO:0048770;pigment granule;4.95647068333819e-18!GO:0042470;melanosome;4.95647068333819e-18!GO:0016874;ligase activity;7.01797882908037e-18!GO:0044265;cellular macromolecule catabolic process;4.781243842159e-17!GO:0044455;mitochondrial membrane part;1.12853512817043e-16!GO:0003676;nucleic acid binding;1.16600214587743e-16!GO:0008134;transcription factor binding;1.336913708634e-16!GO:0006464;protein modification process;1.50398883180195e-16!GO:0022618;protein-RNA complex assembly;1.64809945407386e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.20996790138037e-16!GO:0019941;modification-dependent protein catabolic process;4.15358186675346e-16!GO:0043632;modification-dependent macromolecule catabolic process;4.15358186675346e-16!GO:0015935;small ribosomal subunit;4.85706144475474e-16!GO:0044257;cellular protein catabolic process;5.73420990571803e-16!GO:0044432;endoplasmic reticulum part;6.50109801034762e-16!GO:0006511;ubiquitin-dependent protein catabolic process;7.9385285850514e-16!GO:0043285;biopolymer catabolic process;9.77875948145489e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.55532047660079e-15!GO:0048193;Golgi vesicle transport;3.61110999216498e-15!GO:0009057;macromolecule catabolic process;4.4274030280331e-15!GO:0016070;RNA metabolic process;4.63342633851389e-15!GO:0031980;mitochondrial lumen;7.24502864409867e-15!GO:0005759;mitochondrial matrix;7.24502864409867e-15!GO:0005746;mitochondrial respiratory chain;8.70666614773155e-15!GO:0007049;cell cycle;1.62783848279011e-14!GO:0015934;large ribosomal subunit;2.172671432431e-14!GO:0006605;protein targeting;2.40881329084168e-14!GO:0030163;protein catabolic process;3.4541304805215e-14!GO:0044248;cellular catabolic process;3.64420313422819e-14!GO:0043687;post-translational protein modification;4.58006476703145e-14!GO:0051186;cofactor metabolic process;4.61640028753949e-14!GO:0032559;adenyl ribonucleotide binding;4.72810425891606e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.87194931905764e-14!GO:0005524;ATP binding;5.61963854027034e-14!GO:0005730;nucleolus;8.20184847745136e-14!GO:0030554;adenyl nucleotide binding;2.35741029118972e-13!GO:0008135;translation factor activity, nucleic acid binding;3.00807845794373e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.02702430024414e-12!GO:0003954;NADH dehydrogenase activity;1.02702430024414e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.02702430024414e-12!GO:0005635;nuclear envelope;1.12399276303266e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.0267789850497e-12!GO:0008639;small protein conjugating enzyme activity;3.14792394909166e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.15553479076961e-12!GO:0016604;nuclear body;4.36841670918484e-12!GO:0004842;ubiquitin-protein ligase activity;5.61142492410514e-12!GO:0051082;unfolded protein binding;6.4418820871217e-12!GO:0006974;response to DNA damage stimulus;8.1665435785151e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.1665435785151e-12!GO:0050794;regulation of cellular process;1.32212635915554e-11!GO:0019787;small conjugating protein ligase activity;1.87123111992407e-11!GO:0031965;nuclear membrane;2.22030033648821e-11!GO:0005793;ER-Golgi intermediate compartment;2.67445785998851e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.67445785998851e-11!GO:0042773;ATP synthesis coupled electron transport;2.67445785998851e-11!GO:0005789;endoplasmic reticulum membrane;2.78689383625758e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.20124181013094e-11!GO:0000375;RNA splicing, via transesterification reactions;3.20124181013094e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.20124181013094e-11!GO:0003743;translation initiation factor activity;3.44284387180034e-11!GO:0030964;NADH dehydrogenase complex (quinone);6.07094873488379e-11!GO:0045271;respiratory chain complex I;6.07094873488379e-11!GO:0005747;mitochondrial respiratory chain complex I;6.07094873488379e-11!GO:0006732;coenzyme metabolic process;6.1425408253271e-11!GO:0042623;ATPase activity, coupled;6.25560417645055e-11!GO:0012501;programmed cell death;6.9535455474834e-11!GO:0016887;ATPase activity;7.45920066936098e-11!GO:0006915;apoptosis;8.11843127787132e-11!GO:0005761;mitochondrial ribosome;8.63043008727627e-11!GO:0000313;organellar ribosome;8.63043008727627e-11!GO:0006413;translational initiation;9.33437129357334e-11!GO:0022402;cell cycle process;9.42737128672436e-11!GO:0003712;transcription cofactor activity;9.78402142448128e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.11793608939968e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.53782713933453e-10!GO:0044453;nuclear membrane part;2.44728346107105e-10!GO:0006163;purine nucleotide metabolic process;3.00378260439219e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.10711833861331e-10!GO:0009259;ribonucleotide metabolic process;3.27223780655585e-10!GO:0016607;nuclear speck;4.68214979100493e-10!GO:0009150;purine ribonucleotide metabolic process;5.14575389861552e-10!GO:0008565;protein transporter activity;5.54694746733568e-10!GO:0006446;regulation of translational initiation;5.61491046389461e-10!GO:0004386;helicase activity;6.23366571105011e-10!GO:0005768;endosome;6.52672148191092e-10!GO:0016881;acid-amino acid ligase activity;8.41205743626818e-10!GO:0008219;cell death;1.44611592982541e-09!GO:0016265;death;1.44611592982541e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.79996888647423e-09!GO:0009055;electron carrier activity;1.84383779118724e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.27729945390484e-09!GO:0006461;protein complex assembly;2.45073451904466e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.50949064625684e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.50949064625684e-09!GO:0006164;purine nucleotide biosynthetic process;3.6202203534049e-09!GO:0006913;nucleocytoplasmic transport;3.85477239026344e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.01391994612089e-09!GO:0009141;nucleoside triphosphate metabolic process;4.06518803001287e-09!GO:0006281;DNA repair;4.43323427865697e-09!GO:0031988;membrane-bound vesicle;4.51648369966271e-09!GO:0006793;phosphorus metabolic process;4.82029435699027e-09!GO:0006796;phosphate metabolic process;4.82029435699027e-09!GO:0005773;vacuole;5.3601342293748e-09!GO:0009056;catabolic process;5.70550828874458e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.08993624590743e-09!GO:0016023;cytoplasmic membrane-bound vesicle;6.42441259348433e-09!GO:0051169;nuclear transport;7.91689758726372e-09!GO:0031982;vesicle;1.05692576213066e-08!GO:0003924;GTPase activity;1.26462938494487e-08!GO:0015986;ATP synthesis coupled proton transport;1.27485530813437e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.27485530813437e-08!GO:0009260;ribonucleotide biosynthetic process;1.36775257808442e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.38532017779424e-08!GO:0051726;regulation of cell cycle;1.39611913105783e-08!GO:0031410;cytoplasmic vesicle;1.62484648171542e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.71731426883889e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.71731426883889e-08!GO:0008026;ATP-dependent helicase activity;1.79009760214871e-08!GO:0019829;cation-transporting ATPase activity;1.82146607067931e-08!GO:0044431;Golgi apparatus part;1.88134236037949e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.9670215785451e-08!GO:0048523;negative regulation of cellular process;1.99212672973285e-08!GO:0046034;ATP metabolic process;1.99212672973285e-08!GO:0000074;regulation of progression through cell cycle;2.25011982290299e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.28003927814774e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.33856339362488e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.33856339362488e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.42767992162206e-08!GO:0009719;response to endogenous stimulus;2.44111162782412e-08!GO:0031252;leading edge;2.73996428706785e-08!GO:0016310;phosphorylation;2.77784753671377e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.96438237816527e-08!GO:0042254;ribosome biogenesis and assembly;4.46607850786187e-08!GO:0009060;aerobic respiration;4.80309441425801e-08!GO:0005643;nuclear pore;6.12919657771239e-08!GO:0000323;lytic vacuole;7.6590160351898e-08!GO:0005764;lysosome;7.6590160351898e-08!GO:0005525;GTP binding;1.12266026238611e-07!GO:0050789;regulation of biological process;1.17683644853429e-07!GO:0000278;mitotic cell cycle;1.24635978391308e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.70664733223776e-07!GO:0006754;ATP biosynthetic process;1.78301683973353e-07!GO:0006753;nucleoside phosphate metabolic process;1.78301683973353e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.99058261881532e-07!GO:0009117;nucleotide metabolic process;2.06797365774118e-07!GO:0045333;cellular respiration;2.07168904400697e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;2.41509469990379e-07!GO:0006403;RNA localization;2.70483591078551e-07!GO:0050657;nucleic acid transport;3.06470579598456e-07!GO:0051236;establishment of RNA localization;3.06470579598456e-07!GO:0050658;RNA transport;3.06470579598456e-07!GO:0005770;late endosome;3.25126906251722e-07!GO:0051276;chromosome organization and biogenesis;3.39439326161235e-07!GO:0006399;tRNA metabolic process;3.69907450255225e-07!GO:0065002;intracellular protein transport across a membrane;3.74114735001495e-07!GO:0030120;vesicle coat;4.29933030857621e-07!GO:0030662;coated vesicle membrane;4.29933030857621e-07!GO:0051188;cofactor biosynthetic process;4.92041659337029e-07!GO:0048519;negative regulation of biological process;4.92041659337029e-07!GO:0016044;membrane organization and biogenesis;4.99230864897051e-07!GO:0032446;protein modification by small protein conjugation;5.24507086813199e-07!GO:0017038;protein import;6.05832722442244e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.24418955044846e-07!GO:0006323;DNA packaging;6.78637798788274e-07!GO:0048475;coated membrane;6.83181151987097e-07!GO:0030117;membrane coat;6.83181151987097e-07!GO:0046930;pore complex;6.93673776292249e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.95465442139115e-07!GO:0016567;protein ubiquitination;9.45200564168731e-07!GO:0000151;ubiquitin ligase complex;1.0034845278189e-06!GO:0044440;endosomal part;1.01769118657443e-06!GO:0010008;endosome membrane;1.01769118657443e-06!GO:0000139;Golgi membrane;1.04735280847498e-06!GO:0016787;hydrolase activity;1.14064021942595e-06!GO:0005788;endoplasmic reticulum lumen;1.18695801299852e-06!GO:0030029;actin filament-based process;1.20097839020391e-06!GO:0006366;transcription from RNA polymerase II promoter;1.2877402158158e-06!GO:0019899;enzyme binding;1.33291414865738e-06!GO:0042981;regulation of apoptosis;1.3963253864975e-06!GO:0005769;early endosome;1.40655785011875e-06!GO:0007264;small GTPase mediated signal transduction;1.43024670717415e-06!GO:0051246;regulation of protein metabolic process;1.46735508877869e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.46735508877869e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.46735508877869e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.46735508877869e-06!GO:0032561;guanyl ribonucleotide binding;1.70144467743149e-06!GO:0019001;guanyl nucleotide binding;1.70144467743149e-06!GO:0043067;regulation of programmed cell death;1.84158312777773e-06!GO:0006099;tricarboxylic acid cycle;2.04472274942217e-06!GO:0046356;acetyl-CoA catabolic process;2.04472274942217e-06!GO:0043038;amino acid activation;2.31415036056898e-06!GO:0006418;tRNA aminoacylation for protein translation;2.31415036056898e-06!GO:0043039;tRNA aminoacylation;2.31415036056898e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.60114114085208e-06!GO:0003713;transcription coactivator activity;3.0469590311249e-06!GO:0045786;negative regulation of progression through cell cycle;3.71508501348706e-06!GO:0043069;negative regulation of programmed cell death;4.23736727626451e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.70177529819804e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.21595177218611e-06!GO:0016740;transferase activity;5.98504131875339e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.9912942254247e-06!GO:0043066;negative regulation of apoptosis;6.02523014866406e-06!GO:0007005;mitochondrion organization and biogenesis;6.77995563342537e-06!GO:0006084;acetyl-CoA metabolic process;7.23154738720602e-06!GO:0051028;mRNA transport;7.53339999383483e-06!GO:0009108;coenzyme biosynthetic process;7.53339999383483e-06!GO:0051187;cofactor catabolic process;7.93039299630564e-06!GO:0007243;protein kinase cascade;8.51238813403229e-06!GO:0006916;anti-apoptosis;9.27388455443825e-06!GO:0005798;Golgi-associated vesicle;1.06958949586813e-05!GO:0005667;transcription factor complex;1.16482175753568e-05!GO:0005694;chromosome;1.16482175753568e-05!GO:0006613;cotranslational protein targeting to membrane;1.16719189652164e-05!GO:0045259;proton-transporting ATP synthase complex;1.25613967058684e-05!GO:0005813;centrosome;1.29219112056109e-05!GO:0004298;threonine endopeptidase activity;1.36557501495076e-05!GO:0006260;DNA replication;1.39509957547761e-05!GO:0007010;cytoskeleton organization and biogenesis;1.57168234472141e-05!GO:0000245;spliceosome assembly;1.63437532052743e-05!GO:0016568;chromatin modification;1.72958191601353e-05!GO:0015630;microtubule cytoskeleton;1.82250123993091e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.86784465284355e-05!GO:0006752;group transfer coenzyme metabolic process;1.94872110370354e-05!GO:0003724;RNA helicase activity;1.96401571182553e-05!GO:0009109;coenzyme catabolic process;2.08686359483451e-05!GO:0008047;enzyme activator activity;2.48585228654868e-05!GO:0051301;cell division;2.66337772583876e-05!GO:0003697;single-stranded DNA binding;2.82121039809586e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.03308787916828e-05!GO:0048471;perinuclear region of cytoplasm;3.03325694678901e-05!GO:0016853;isomerase activity;3.24794020528015e-05!GO:0031968;organelle outer membrane;3.329632532797e-05!GO:0006364;rRNA processing;3.69001743691929e-05!GO:0051170;nuclear import;3.93114293096315e-05!GO:0000087;M phase of mitotic cell cycle;4.57963693571809e-05!GO:0019867;outer membrane;4.799074316094e-05!GO:0030867;rough endoplasmic reticulum membrane;4.97375780305956e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.05327477906404e-05!GO:0016072;rRNA metabolic process;5.1809963504843e-05!GO:0065007;biological regulation;5.54845429685806e-05!GO:0005815;microtubule organizing center;5.92675365626513e-05!GO:0007067;mitosis;6.32687973438819e-05!GO:0006606;protein import into nucleus;6.88729465463541e-05!GO:0008092;cytoskeletal protein binding;7.02309717555042e-05!GO:0016779;nucleotidyltransferase activity;7.63736936350673e-05!GO:0006897;endocytosis;8.36322291281048e-05!GO:0010324;membrane invagination;8.36322291281048e-05!GO:0003714;transcription corepressor activity;8.63182167319844e-05!GO:0006612;protein targeting to membrane;8.76518280526657e-05!GO:0043566;structure-specific DNA binding;8.92863856435705e-05!GO:0016564;transcription repressor activity;9.38800694804031e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.47527099383433e-05!GO:0008654;phospholipid biosynthetic process;9.7131292891501e-05!GO:0005096;GTPase activator activity;0.000103038610582531!GO:0022403;cell cycle phase;0.000117218284802075!GO:0016563;transcription activator activity;0.000126979560045949!GO:0006333;chromatin assembly or disassembly;0.000128541682707522!GO:0030133;transport vesicle;0.000136500175014181!GO:0016859;cis-trans isomerase activity;0.000144030127937378!GO:0016491;oxidoreductase activity;0.000146322327790319!GO:0044427;chromosomal part;0.000147655637827333!GO:0019222;regulation of metabolic process;0.000147655637827333!GO:0051427;hormone receptor binding;0.000162564855080064!GO:0005741;mitochondrial outer membrane;0.000164282121849784!GO:0045454;cell redox homeostasis;0.000174267652251049!GO:0033116;ER-Golgi intermediate compartment membrane;0.000175439315502144!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000185740306397473!GO:0015399;primary active transmembrane transporter activity;0.000185740306397473!GO:0042802;identical protein binding;0.000195866036741767!GO:0001726;ruffle;0.000203500660899365!GO:0065004;protein-DNA complex assembly;0.000206409335425397!GO:0043623;cellular protein complex assembly;0.000207396131594011!GO:0005905;coated pit;0.000229153419941801!GO:0009165;nucleotide biosynthetic process;0.00024218695429448!GO:0005885;Arp2/3 protein complex;0.000277643474929426!GO:0015980;energy derivation by oxidation of organic compounds;0.000300026521569608!GO:0035257;nuclear hormone receptor binding;0.000315636545736231!GO:0007265;Ras protein signal transduction;0.000315636545736231!GO:0030027;lamellipodium;0.00033152885612094!GO:0005048;signal sequence binding;0.000347833312423855!GO:0043021;ribonucleoprotein binding;0.000348330480950816!GO:0000785;chromatin;0.000401768881484999!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000415595566054849!GO:0008186;RNA-dependent ATPase activity;0.000422754142047602!GO:0005083;small GTPase regulator activity;0.000514893504282011!GO:0016197;endosome transport;0.000528586543943941!GO:0019843;rRNA binding;0.00054592206438811!GO:0065009;regulation of a molecular function;0.000560773285917137!GO:0008250;oligosaccharyl transferase complex;0.000596103527212547!GO:0005762;mitochondrial large ribosomal subunit;0.000654817345801608!GO:0000315;organellar large ribosomal subunit;0.000654817345801608!GO:0043492;ATPase activity, coupled to movement of substances;0.00071350039666622!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000721264764610653!GO:0048522;positive regulation of cellular process;0.000742373269873067!GO:0051789;response to protein stimulus;0.000782790920616647!GO:0006986;response to unfolded protein;0.000782790920616647!GO:0051087;chaperone binding;0.000786110331487347!GO:0045045;secretory pathway;0.000827141099272502!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000843993335286754!GO:0004576;oligosaccharyl transferase activity;0.000852693362893329!GO:0006091;generation of precursor metabolites and energy;0.000880746723100518!GO:0005774;vacuolar membrane;0.000936444939167917!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000956537249614619!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000990938248758467!GO:0051920;peroxiredoxin activity;0.00101253066465211!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0010625860368365!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00110487642329082!GO:0003729;mRNA binding;0.00111779866505525!GO:0004004;ATP-dependent RNA helicase activity;0.00122168640989249!GO:0030659;cytoplasmic vesicle membrane;0.00124209096252253!GO:0051168;nuclear export;0.00124209096252253!GO:0016363;nuclear matrix;0.00125444470589658!GO:0009967;positive regulation of signal transduction;0.00132838789133723!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00137174827780533!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00140799298969786!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00144796670883702!GO:0007242;intracellular signaling cascade;0.00146483245647755!GO:0015992;proton transport;0.00146923022256246!GO:0006818;hydrogen transport;0.00157159774366717!GO:0000059;protein import into nucleus, docking;0.00165824192075806!GO:0031324;negative regulation of cellular metabolic process;0.00167719231364818!GO:0031902;late endosome membrane;0.00175142032762544!GO:0016126;sterol biosynthetic process;0.00180268936977744!GO:0008139;nuclear localization sequence binding;0.00183369903826183!GO:0031072;heat shock protein binding;0.00197134364406713!GO:0006891;intra-Golgi vesicle-mediated transport;0.00204132911943848!GO:0005099;Ras GTPase activator activity;0.00204706499966589!GO:0005791;rough endoplasmic reticulum;0.00225533472608721!GO:0000314;organellar small ribosomal subunit;0.00226868711641145!GO:0005763;mitochondrial small ribosomal subunit;0.00226868711641145!GO:0030658;transport vesicle membrane;0.00236510030862607!GO:0000279;M phase;0.00237222230198768!GO:0008632;apoptotic program;0.00240028737447069!GO:0007040;lysosome organization and biogenesis;0.00250453445090771!GO:0044433;cytoplasmic vesicle part;0.00257136882197377!GO:0018196;peptidyl-asparagine modification;0.00260852195350482!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00260852195350482!GO:0048500;signal recognition particle;0.00261983393162317!GO:0044437;vacuolar part;0.00263639243874542!GO:0044262;cellular carbohydrate metabolic process;0.00268394015756364!GO:0043681;protein import into mitochondrion;0.00268394015756364!GO:0030663;COPI coated vesicle membrane;0.00269465795130894!GO:0030126;COPI vesicle coat;0.00269465795130894!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00276764683095517!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00276764683095517!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00276764683095517!GO:0030134;ER to Golgi transport vesicle;0.0028450166318188!GO:0006950;response to stress;0.00289533832057271!GO:0006383;transcription from RNA polymerase III promoter;0.00299940336200147!GO:0008361;regulation of cell size;0.00321395598863278!GO:0007006;mitochondrial membrane organization and biogenesis;0.00330727848987483!GO:0006509;membrane protein ectodomain proteolysis;0.0033824274000147!GO:0033619;membrane protein proteolysis;0.0033824274000147!GO:0012506;vesicle membrane;0.00338981816851804!GO:0006402;mRNA catabolic process;0.00342967914555926!GO:0006892;post-Golgi vesicle-mediated transport;0.00362842354227145!GO:0031901;early endosome membrane;0.00363057949821784!GO:0007034;vacuolar transport;0.0036361745963061!GO:0005765;lysosomal membrane;0.00366533163659839!GO:0003899;DNA-directed RNA polymerase activity;0.00369322105302541!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00375519333740516!GO:0004674;protein serine/threonine kinase activity;0.00379524751544015!GO:0030695;GTPase regulator activity;0.00388411408739356!GO:0004177;aminopeptidase activity;0.00451446977414766!GO:0022890;inorganic cation transmembrane transporter activity;0.00457865521871591!GO:0030521;androgen receptor signaling pathway;0.00457953853513148!GO:0033673;negative regulation of kinase activity;0.00458414153675604!GO:0006469;negative regulation of protein kinase activity;0.00458414153675604!GO:0030118;clathrin coat;0.00467384049493739!GO:0009892;negative regulation of metabolic process;0.00467384049493739!GO:0030127;COPII vesicle coat;0.00469768908662737!GO:0012507;ER to Golgi transport vesicle membrane;0.00469768908662737!GO:0016049;cell growth;0.00469949858464924!GO:0046489;phosphoinositide biosynthetic process;0.00471644710914661!GO:0009966;regulation of signal transduction;0.00478845576725643!GO:0051252;regulation of RNA metabolic process;0.00479387222138737!GO:0005819;spindle;0.00480207630172255!GO:0030137;COPI-coated vesicle;0.00491279912750025!GO:0007033;vacuole organization and biogenesis;0.00497311141566928!GO:0051329;interphase of mitotic cell cycle;0.00518673234658276!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00523027881259538!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00526016074129321!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0052654696958653!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00537630343313442!GO:0045047;protein targeting to ER;0.00537630343313442!GO:0006695;cholesterol biosynthetic process;0.00543412334772778!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00553082196870732!GO:0008234;cysteine-type peptidase activity;0.00571438702061188!GO:0007050;cell cycle arrest;0.0057934397908784!GO:0001558;regulation of cell growth;0.0057934397908784!GO:0003779;actin binding;0.00586632463333357!GO:0031625;ubiquitin protein ligase binding;0.00587530907971281!GO:0046474;glycerophospholipid biosynthetic process;0.00588154479195952!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00601238038312087!GO:0006839;mitochondrial transport;0.00633518291474248!GO:0017166;vinculin binding;0.00633518291474248!GO:0030660;Golgi-associated vesicle membrane;0.00635281439375328!GO:0030880;RNA polymerase complex;0.00656811661309014!GO:0003690;double-stranded DNA binding;0.0067776546332502!GO:0006626;protein targeting to mitochondrion;0.00687613547891351!GO:0032940;secretion by cell;0.00698255826565181!GO:0006352;transcription initiation;0.00703613160339563!GO:0051348;negative regulation of transferase activity;0.00722601067101051!GO:0008312;7S RNA binding;0.00806935960715437!GO:0022406;membrane docking;0.00807256966068853!GO:0048278;vesicle docking;0.00807256966068853!GO:0016301;kinase activity;0.00807256966068853!GO:0006414;translational elongation;0.008288018081163!GO:0006401;RNA catabolic process;0.0084456727699789!GO:0035258;steroid hormone receptor binding;0.0084456727699789!GO:0006650;glycerophospholipid metabolic process;0.0084456727699789!GO:0006289;nucleotide-excision repair;0.00847043907734456!GO:0046467;membrane lipid biosynthetic process;0.00892769665235178!GO:0048487;beta-tubulin binding;0.00894332420860935!GO:0016481;negative regulation of transcription;0.00914933523214272!GO:0031323;regulation of cellular metabolic process;0.00923357873818387!GO:0051325;interphase;0.00930708306252123!GO:0030032;lamellipodium biogenesis;0.00931827149900729!GO:0005637;nuclear inner membrane;0.00934146849448405!GO:0050790;regulation of catalytic activity;0.00939676226656729!GO:0007162;negative regulation of cell adhesion;0.00941307320705826!GO:0007266;Rho protein signal transduction;0.00957675128769045!GO:0043488;regulation of mRNA stability;0.00997551364277243!GO:0043487;regulation of RNA stability;0.00997551364277243!GO:0000209;protein polyubiquitination;0.0103537202688865!GO:0030833;regulation of actin filament polymerization;0.0107212440195153!GO:0030041;actin filament polymerization;0.0109316778483741!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0116864500854003!GO:0015002;heme-copper terminal oxidase activity;0.0116864500854003!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0116864500854003!GO:0004129;cytochrome-c oxidase activity;0.0116864500854003!GO:0005869;dynactin complex;0.0118161729632287!GO:0003684;damaged DNA binding;0.0119333733973082!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0121504015113758!GO:0001952;regulation of cell-matrix adhesion;0.012240349602165!GO:0030132;clathrin coat of coated pit;0.012359944455579!GO:0015631;tubulin binding;0.0123958212404685!GO:0007041;lysosomal transport;0.0124627600032796!GO:0005100;Rho GTPase activator activity;0.0125973617595022!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0126136631955139!GO:0000428;DNA-directed RNA polymerase complex;0.0126136631955139!GO:0005938;cell cortex;0.0127413790177977!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0135006213858054!GO:0006904;vesicle docking during exocytosis;0.0137497868852042!GO:0022408;negative regulation of cell-cell adhesion;0.0138344505657803!GO:0006740;NADPH regeneration;0.0139229315395653!GO:0006098;pentose-phosphate shunt;0.0139229315395653!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0141224567389759!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0141224567389759!GO:0030518;steroid hormone receptor signaling pathway;0.0143020188628961!GO:0051540;metal cluster binding;0.0151019912156825!GO:0051536;iron-sulfur cluster binding;0.0151019912156825!GO:0051128;regulation of cellular component organization and biogenesis;0.0151856757811146!GO:0006516;glycoprotein catabolic process;0.0154419785924052!GO:0006497;protein amino acid lipidation;0.0157965639054!GO:0051336;regulation of hydrolase activity;0.0158123231096727!GO:0030384;phosphoinositide metabolic process;0.0160913281112353!GO:0006611;protein export from nucleus;0.0166369772473121!GO:0051539;4 iron, 4 sulfur cluster binding;0.0167623937173!GO:0033093;Weibel-Palade body;0.0169584471783307!GO:0005832;chaperonin-containing T-complex;0.0171481340300963!GO:0016251;general RNA polymerase II transcription factor activity;0.0179255553243894!GO:0000287;magnesium ion binding;0.0179255553243894!GO:0015036;disulfide oxidoreductase activity;0.0180853531819856!GO:0008180;signalosome;0.0180853531819856!GO:0005684;U2-dependent spliceosome;0.0184787219245076!GO:0030119;AP-type membrane coat adaptor complex;0.0184823630942595!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0185758891108979!GO:0003756;protein disulfide isomerase activity;0.0185758891108979!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0185758891108979!GO:0016408;C-acyltransferase activity;0.0187569926533174!GO:0043022;ribosome binding;0.019083283095735!GO:0033130;acetylcholine receptor binding;0.0190996104675186!GO:0006310;DNA recombination;0.0191955803666563!GO:0006350;transcription;0.0195080188966016!GO:0051270;regulation of cell motility;0.0197765757087703!GO:0006334;nucleosome assembly;0.0199026843642509!GO:0035035;histone acetyltransferase binding;0.0199657262388546!GO:0006261;DNA-dependent DNA replication;0.0201375343301073!GO:0000339;RNA cap binding;0.0203637662732338!GO:0006302;double-strand break repair;0.0204638478567453!GO:0044452;nucleolar part;0.0210293674954164!GO:0001953;negative regulation of cell-matrix adhesion;0.0211238654205254!GO:0008154;actin polymerization and/or depolymerization;0.0211764857737978!GO:0006643;membrane lipid metabolic process;0.0212178612300475!GO:0051101;regulation of DNA binding;0.0213630788819354!GO:0043087;regulation of GTPase activity;0.0214547773746705!GO:0040011;locomotion;0.0216105982427702!GO:0000118;histone deacetylase complex;0.021796316626003!GO:0003711;transcription elongation regulator activity;0.0218682499801835!GO:0004197;cysteine-type endopeptidase activity;0.0219804982686579!GO:0007030;Golgi organization and biogenesis;0.0222492788599847!GO:0022415;viral reproductive process;0.0224984819349693!GO:0008610;lipid biosynthetic process;0.0231330714959827!GO:0051287;NAD binding;0.0235342013420267!GO:0006979;response to oxidative stress;0.023576133995573!GO:0031497;chromatin assembly;0.0237959368734195!GO:0045893;positive regulation of transcription, DNA-dependent;0.0238915851994392!GO:0042158;lipoprotein biosynthetic process;0.0238915851994392!GO:0032984;macromolecular complex disassembly;0.0254606422542889!GO:0007021;tubulin folding;0.0255612927850245!GO:0050662;coenzyme binding;0.0258707003580608!GO:0008033;tRNA processing;0.0264183856554662!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0268716595680115!GO:0008022;protein C-terminus binding;0.0273044874973292!GO:0050681;androgen receptor binding;0.0273677030195544!GO:0006595;polyamine metabolic process;0.0275074974670096!GO:0030131;clathrin adaptor complex;0.0275131631571553!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0277985925086742!GO:0047485;protein N-terminus binding;0.0280540686567466!GO:0019904;protein domain specific binding;0.0288852828656526!GO:0040012;regulation of locomotion;0.0293854984607095!GO:0051098;regulation of binding;0.029524493545118!GO:0016601;Rac protein signal transduction;0.0302811335095794!GO:0043433;negative regulation of transcription factor activity;0.0304107497684646!GO:0030031;cell projection biogenesis;0.0308189359273984!GO:0006376;mRNA splice site selection;0.0308426432701978!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0308426432701978!GO:0003678;DNA helicase activity;0.0308803786046267!GO:0033367;protein localization in mast cell secretory granule;0.0308803786046267!GO:0033365;protein localization in organelle;0.0308803786046267!GO:0033371;T cell secretory granule organization and biogenesis;0.0308803786046267!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0308803786046267!GO:0033375;protease localization in T cell secretory granule;0.0308803786046267!GO:0042629;mast cell granule;0.0308803786046267!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0308803786046267!GO:0033364;mast cell secretory granule organization and biogenesis;0.0308803786046267!GO:0033380;granzyme B localization in T cell secretory granule;0.0308803786046267!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0308803786046267!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0308803786046267!GO:0033368;protease localization in mast cell secretory granule;0.0308803786046267!GO:0033366;protein localization in secretory granule;0.0308803786046267!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0308803786046267!GO:0033374;protein localization in T cell secretory granule;0.0308803786046267!GO:0000049;tRNA binding;0.0309413799088575!GO:0048660;regulation of smooth muscle cell proliferation;0.0316372787026846!GO:0043284;biopolymer biosynthetic process;0.031924064155568!GO:0050811;GABA receptor binding;0.0320287228585718!GO:0051059;NF-kappaB binding;0.0322008714907105!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0333390452468613!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0334078230360565!GO:0004563;beta-N-acetylhexosaminidase activity;0.0334078230360565!GO:0043086;negative regulation of catalytic activity;0.0342821432300653!GO:0019902;phosphatase binding;0.0343600837020762!GO:0030125;clathrin vesicle coat;0.0348549938373108!GO:0030665;clathrin coated vesicle membrane;0.0348549938373108!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.035118422982153!GO:0006338;chromatin remodeling;0.0351842851820238!GO:0016272;prefoldin complex;0.0352625002719485!GO:0031529;ruffle organization and biogenesis;0.0354486329494485!GO:0046483;heterocycle metabolic process;0.0357753193564201!GO:0006405;RNA export from nucleus;0.035999383765179!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0366609803644291!GO:0045941;positive regulation of transcription;0.036783608644574!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0370284325832802!GO:0006919;caspase activation;0.0370284325832802!GO:0031418;L-ascorbic acid binding;0.0372563577363774!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0373803973179276!GO:0033043;regulation of organelle organization and biogenesis;0.0373803973179276!GO:0005784;translocon complex;0.0380816697793065!GO:0030984;kininogen binding;0.0381655760418675!GO:0004213;cathepsin B activity;0.0381655760418675!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0383702922675558!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0383869079503767!GO:0003682;chromatin binding;0.0385700156592793!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0388039451075211!GO:0033559;unsaturated fatty acid metabolic process;0.0392165335195929!GO:0006636;unsaturated fatty acid biosynthetic process;0.0392165335195929!GO:0048518;positive regulation of biological process;0.0394652633128272!GO:0031124;mRNA 3'-end processing;0.0394652633128272!GO:0007044;cell-substrate junction assembly;0.0394652633128272!GO:0043624;cellular protein complex disassembly;0.0395392155600091!GO:0030176;integral to endoplasmic reticulum membrane;0.0400353150959811!GO:0000082;G1/S transition of mitotic cell cycle;0.0403713189791128!GO:0010468;regulation of gene expression;0.0412788293881391!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0413600659208994!GO:0016860;intramolecular oxidoreductase activity;0.0413635830822751!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0417763244735083!GO:0006778;porphyrin metabolic process;0.0423240624842984!GO:0033013;tetrapyrrole metabolic process;0.0423240624842984!GO:0001568;blood vessel development;0.0430133218341883!GO:0006644;phospholipid metabolic process;0.0432260431108534!GO:0000776;kinetochore;0.0433851151183648!GO:0016125;sterol metabolic process;0.0435862149555533!GO:0001944;vasculature development;0.0439811990661824!GO:0006672;ceramide metabolic process;0.0439811990661824!GO:0042168;heme metabolic process;0.0439836181220964!GO:0042585;germinal vesicle;0.0440845850516778!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0450801494440228!GO:0010257;NADH dehydrogenase complex assembly;0.0450801494440228!GO:0033108;mitochondrial respiratory chain complex assembly;0.0450801494440228!GO:0043241;protein complex disassembly;0.0450801494440228!GO:0006378;mRNA polyadenylation;0.0456005061761069!GO:0000075;cell cycle checkpoint;0.0467951331433287!GO:0008538;proteasome activator activity;0.0468140562010932!GO:0046966;thyroid hormone receptor binding;0.0468140562010932!GO:0008637;apoptotic mitochondrial changes;0.0469744779435369!GO:0022407;regulation of cell-cell adhesion;0.0469886545742242!GO:0008097;5S rRNA binding;0.0474695850833267!GO:0009116;nucleoside metabolic process;0.0478130182440839!GO:0043495;protein anchor;0.0483964487431591!GO:0006739;NADP metabolic process;0.0483964487431591!GO:0030742;GTP-dependent protein binding;0.0485873807128145!GO:0030522;intracellular receptor-mediated signaling pathway;0.0494898703737574!GO:0005874;microtubule;0.0495726006804874!GO:0031272;regulation of pseudopodium formation;0.0499937312989117!GO:0031269;pseudopodium formation;0.0499937312989117!GO:0031344;regulation of cell projection organization and biogenesis;0.0499937312989117!GO:0031268;pseudopodium organization and biogenesis;0.0499937312989117!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0499937312989117!GO:0031274;positive regulation of pseudopodium formation;0.0499937312989117 | |||
|sample_id=11317 | |sample_id=11317 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=lymph node | |sample_tissue=lymph node | ||
|top_motifs=FOX{I1,J2}:1.93744873705;PAX6:1.66442804053;SREBF1,2:1.57459360664;NFATC1..3:1.54313411048;SOX5:1.43174097548;SOX{8,9,10}:1.41230232396;RXR{A,B,G}:1.38946555438;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.34184006581;TEF:1.25379597279;SOX2:1.24828556886;IKZF2:1.19195023897;PAX1,9:1.08405217384;SPZ1:1.06750160641;TLX1..3_NFIC{dimer}:1.06664180906;HBP1_HMGB_SSRP1_UBTF:1.00814118395;POU3F1..4:0.991538347194;ARID5B:0.956571114249;bHLH_family:0.909329225415;ADNP_IRX_SIX_ZHX:0.872897511774;ZFP161:0.822762687176;FOXQ1:0.800504763483;ELF1,2,4:0.798280895116;STAT1,3:0.787763597281;LEF1_TCF7_TCF7L1,2:0.714811397888;ETS1,2:0.696055363655;AR:0.649366678018;TFAP4:0.636718621275;NR3C1:0.619331855853;STAT2,4,6:0.602025277537;HOXA9_MEIS1:0.601674445755;LHX3,4:0.562989191997;TFAP2{A,C}:0.551315988615;TEAD1:0.540365659452;GATA6:0.528109398241;SPIB:0.523075804857;XCPE1{core}:0.522081315234;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.522018104446;RBPJ:0.520429602596;ALX1:0.520407661679;FOX{D1,D2}:0.506976081673;SOX17:0.505340519934;TAL1_TCF{3,4,12}:0.494842012876;FOXD3:0.491150281024;NRF1:0.491081294285;PAX5:0.460346506516;TP53:0.454735228677;EVI1:0.453435301591;GZF1:0.442172894143;SP1:0.432752267388;PDX1:0.414703991348;EN1,2:0.363012579678;EGR1..3:0.334262835468;GFI1B:0.323601283115;TGIF1:0.301314750964;PRDM1:0.30077437801;FOX{F1,F2,J1}:0.296111893259;IKZF1:0.291905625449;TFDP1:0.287896238435;IRF1,2:0.285647999534;FOXN1:0.282070647324;NKX2-3_NKX2-5:0.279890097858;HAND1,2:0.27706262874;HMGA1,2:0.240537411042;GCM1,2:0.233595288768;PAX2:0.216206747211;CDC5L:0.215879849261;ZBTB16:0.215242421539;MED-1{core}:0.185485430175;NANOG:0.165905588841;NFE2:0.151736111945;ZNF143:0.131339575716;SPI1:0.11457475117;DMAP1_NCOR{1,2}_SMARC:0.107973039148;CRX:0.106471200915;HIC1:0.103599931761;FOXP1:0.0910975840871;ZBTB6:0.0768704000109;MAZ:0.0728173282116;MYOD1:0.0717624973138;MTE{core}:0.0637298363842;YY1:0.0595484149187;ONECUT1,2:0.0588687907268;TFAP2B:0.0500677696759;BPTF:0.0498531360962;BACH2:0.0370155061906;ATF2:0.0357394946626;NANOG{mouse}:0.0348978739488;PITX1..3:0.0331975376275;FOSL2:0.0307922306315;HNF4A_NR2F1,2:0.0161043239077;POU1F1:-0.0142560325969;NFIX:-0.0191974665413;NFY{A,B,C}:-0.0230438376767;NR5A1,2:-0.0260277795136;FOXA2:-0.0599544552969;CREB1:-0.0623061903468;SMAD1..7,9:-0.0688297403686;EP300:-0.0751581671031;AIRE:-0.0805890407964;NHLH1,2:-0.0831044718533;FOS_FOS{B,L1}_JUN{B,D}:-0.0837881315877;NFKB1_REL_RELA:-0.0941154706385;TLX2:-0.113405775251;GFI1:-0.123707044474;GTF2I:-0.133234037995;SRF:-0.137528489342;LMO2:-0.138685561187;POU6F1:-0.139085142183;REST:-0.142353486102;CUX2:-0.14483027097;NFE2L2:-0.148940117125;NKX2-2,8:-0.160520594491;HNF1A:-0.160906589075;MEF2{A,B,C,D}:-0.162439121166;PAX3,7:-0.16319269344;MZF1:-0.165711011045;FOXL1:-0.186970719276;IRF7:-0.204053065578;PBX1:-0.20596383934;GATA4:-0.226102862209;MYB:-0.227088311576;UFEwm:-0.230656731766;PATZ1:-0.242495961768;HSF1,2:-0.247168703429;ZIC1..3:-0.261938876275;PRRX1,2:-0.263772998726;FOXO1,3,4:-0.264519723203;GTF2A1,2:-0.27046623034;CDX1,2,4:-0.279944721894;MYFfamily:-0.293096870878;PAX8:-0.295659988457;RFX1:-0.307027416763;HIF1A:-0.309253702522;AHR_ARNT_ARNT2:-0.338826094409;NR1H4:-0.340481477707;NKX6-1,2:-0.36655697235;STAT5{A,B}:-0.399031075887;E2F1..5:-0.404412910854;ATF6:-0.426146832351;HLF:-0.426551763295;ELK1,4_GABP{A,B1}:-0.427499323902;RORA:-0.444079779814;PPARG:-0.467025465459;NFE2L1:-0.471997825618;ZNF238:-0.475493973801;ZNF148:-0.515689044768;MTF1:-0.539348532403;ESRRA:-0.547175026887;OCT4_SOX2{dimer}:-0.565536910191;XBP1:-0.579104370626;CEBPA,B_DDIT3:-0.580716065423;HMX1:-0.582532213774;ATF4:-0.591051575591;MYBL2:-0.592586548021;RREB1:-0.597207769397;JUN:-0.600090183009;TOPORS:-0.601941183499;HOX{A5,B5}:-0.614971419112;NKX2-1,4:-0.618636289804;HES1:-0.621540339953;TBP:-0.631403502823;GLI1..3:-0.643247025878;RUNX1..3:-0.64698808969;TFCP2:-0.654262127332;SNAI1..3:-0.67419792344;ALX4:-0.69599452105;EBF1:-0.720804723022;PAX4:-0.729343108071;FOXP3:-0.72981091294;ATF5_CREB3:-0.739288011905;NKX3-2:-0.793040307533;ZNF423:-0.804213337931;VSX1,2:-0.807277835438;ESR1:-0.81414705334;NKX3-1:-0.824071276708;POU5F1:-0.833528366695;MAFB:-0.836362170084;BREu{core}:-0.852302682113;T:-0.85376832776;HOX{A4,D4}:-0.865965621893;KLF4:-0.888845697393;ZEB1:-0.889280198739;FOXM1:-0.9259636315;ZNF384:-0.931418863196;TBX4,5:-0.937105537063;NR6A1:-0.954052551081;NFIL3:-1.00306747642;RFX2..5_RFXANK_RFXAP:-1.05999752659;DBP:-1.12183365326;HOX{A6,A7,B6,B7}:-1.17732599926;RXRA_VDR{dimer}:-1.18226987381;POU2F1..3:-1.46704328031 | |top_motifs=FOX{I1,J2}:1.93744873705;PAX6:1.66442804053;SREBF1,2:1.57459360664;NFATC1..3:1.54313411048;SOX5:1.43174097548;SOX{8,9,10}:1.41230232396;RXR{A,B,G}:1.38946555438;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.34184006581;TEF:1.25379597279;SOX2:1.24828556886;IKZF2:1.19195023897;PAX1,9:1.08405217384;SPZ1:1.06750160641;TLX1..3_NFIC{dimer}:1.06664180906;HBP1_HMGB_SSRP1_UBTF:1.00814118395;POU3F1..4:0.991538347194;ARID5B:0.956571114249;bHLH_family:0.909329225415;ADNP_IRX_SIX_ZHX:0.872897511774;ZFP161:0.822762687176;FOXQ1:0.800504763483;ELF1,2,4:0.798280895116;STAT1,3:0.787763597281;LEF1_TCF7_TCF7L1,2:0.714811397888;ETS1,2:0.696055363655;AR:0.649366678018;TFAP4:0.636718621275;NR3C1:0.619331855853;STAT2,4,6:0.602025277537;HOXA9_MEIS1:0.601674445755;LHX3,4:0.562989191997;TFAP2{A,C}:0.551315988615;TEAD1:0.540365659452;GATA6:0.528109398241;SPIB:0.523075804857;XCPE1{core}:0.522081315234;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.522018104446;RBPJ:0.520429602596;ALX1:0.520407661679;FOX{D1,D2}:0.506976081673;SOX17:0.505340519934;TAL1_TCF{3,4,12}:0.494842012876;FOXD3:0.491150281024;NRF1:0.491081294285;PAX5:0.460346506516;TP53:0.454735228677;EVI1:0.453435301591;GZF1:0.442172894143;SP1:0.432752267388;PDX1:0.414703991348;EN1,2:0.363012579678;EGR1..3:0.334262835468;GFI1B:0.323601283115;TGIF1:0.301314750964;PRDM1:0.30077437801;FOX{F1,F2,J1}:0.296111893259;IKZF1:0.291905625449;TFDP1:0.287896238435;IRF1,2:0.285647999534;FOXN1:0.282070647324;NKX2-3_NKX2-5:0.279890097858;HAND1,2:0.27706262874;HMGA1,2:0.240537411042;GCM1,2:0.233595288768;PAX2:0.216206747211;CDC5L:0.215879849261;ZBTB16:0.215242421539;MED-1{core}:0.185485430175;NANOG:0.165905588841;NFE2:0.151736111945;ZNF143:0.131339575716;SPI1:0.11457475117;DMAP1_NCOR{1,2}_SMARC:0.107973039148;CRX:0.106471200915;HIC1:0.103599931761;FOXP1:0.0910975840871;ZBTB6:0.0768704000109;MAZ:0.0728173282116;MYOD1:0.0717624973138;MTE{core}:0.0637298363842;YY1:0.0595484149187;ONECUT1,2:0.0588687907268;TFAP2B:0.0500677696759;BPTF:0.0498531360962;BACH2:0.0370155061906;ATF2:0.0357394946626;NANOG{mouse}:0.0348978739488;PITX1..3:0.0331975376275;FOSL2:0.0307922306315;HNF4A_NR2F1,2:0.0161043239077;POU1F1:-0.0142560325969;NFIX:-0.0191974665413;NFY{A,B,C}:-0.0230438376767;NR5A1,2:-0.0260277795136;FOXA2:-0.0599544552969;CREB1:-0.0623061903468;SMAD1..7,9:-0.0688297403686;EP300:-0.0751581671031;AIRE:-0.0805890407964;NHLH1,2:-0.0831044718533;FOS_FOS{B,L1}_JUN{B,D}:-0.0837881315877;NFKB1_REL_RELA:-0.0941154706385;TLX2:-0.113405775251;GFI1:-0.123707044474;GTF2I:-0.133234037995;SRF:-0.137528489342;LMO2:-0.138685561187;POU6F1:-0.139085142183;REST:-0.142353486102;CUX2:-0.14483027097;NFE2L2:-0.148940117125;NKX2-2,8:-0.160520594491;HNF1A:-0.160906589075;MEF2{A,B,C,D}:-0.162439121166;PAX3,7:-0.16319269344;MZF1:-0.165711011045;FOXL1:-0.186970719276;IRF7:-0.204053065578;PBX1:-0.20596383934;GATA4:-0.226102862209;MYB:-0.227088311576;UFEwm:-0.230656731766;PATZ1:-0.242495961768;HSF1,2:-0.247168703429;ZIC1..3:-0.261938876275;PRRX1,2:-0.263772998726;FOXO1,3,4:-0.264519723203;GTF2A1,2:-0.27046623034;CDX1,2,4:-0.279944721894;MYFfamily:-0.293096870878;PAX8:-0.295659988457;RFX1:-0.307027416763;HIF1A:-0.309253702522;AHR_ARNT_ARNT2:-0.338826094409;NR1H4:-0.340481477707;NKX6-1,2:-0.36655697235;STAT5{A,B}:-0.399031075887;E2F1..5:-0.404412910854;ATF6:-0.426146832351;HLF:-0.426551763295;ELK1,4_GABP{A,B1}:-0.427499323902;RORA:-0.444079779814;PPARG:-0.467025465459;NFE2L1:-0.471997825618;ZNF238:-0.475493973801;ZNF148:-0.515689044768;MTF1:-0.539348532403;ESRRA:-0.547175026887;OCT4_SOX2{dimer}:-0.565536910191;XBP1:-0.579104370626;CEBPA,B_DDIT3:-0.580716065423;HMX1:-0.582532213774;ATF4:-0.591051575591;MYBL2:-0.592586548021;RREB1:-0.597207769397;JUN:-0.600090183009;TOPORS:-0.601941183499;HOX{A5,B5}:-0.614971419112;NKX2-1,4:-0.618636289804;HES1:-0.621540339953;TBP:-0.631403502823;GLI1..3:-0.643247025878;RUNX1..3:-0.64698808969;TFCP2:-0.654262127332;SNAI1..3:-0.67419792344;ALX4:-0.69599452105;EBF1:-0.720804723022;PAX4:-0.729343108071;FOXP3:-0.72981091294;ATF5_CREB3:-0.739288011905;NKX3-2:-0.793040307533;ZNF423:-0.804213337931;VSX1,2:-0.807277835438;ESR1:-0.81414705334;NKX3-1:-0.824071276708;POU5F1:-0.833528366695;MAFB:-0.836362170084;BREu{core}:-0.852302682113;T:-0.85376832776;HOX{A4,D4}:-0.865965621893;KLF4:-0.888845697393;ZEB1:-0.889280198739;FOXM1:-0.9259636315;ZNF384:-0.931418863196;TBX4,5:-0.937105537063;NR6A1:-0.954052551081;NFIL3:-1.00306747642;RFX2..5_RFXANK_RFXAP:-1.05999752659;DBP:-1.12183365326;HOX{A6,A7,B6,B7}:-1.17732599926;RXRA_VDR{dimer}:-1.18226987381;POU2F1..3:-1.46704328031 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11317-117D3;search_select_hide=table117:FF:11317-117D3 | |||
}} | }} | ||
Latest revision as of 16:33, 3 June 2020
| Name: | Endothelial Cells - Lymphatic, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11901 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11901
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11901
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.246 |
| 10 | 10 | 0.12 |
| 100 | 100 | 0.787 |
| 101 | 101 | 0.664 |
| 102 | 102 | 0.556 |
| 103 | 103 | 0.349 |
| 104 | 104 | 0.407 |
| 105 | 105 | 0.248 |
| 106 | 106 | 0.0166 |
| 107 | 107 | 0.559 |
| 108 | 108 | 0.808 |
| 109 | 109 | 0.171 |
| 11 | 11 | 0.263 |
| 110 | 110 | 0.66 |
| 111 | 111 | 0.827 |
| 112 | 112 | 0.335 |
| 113 | 113 | 0.4 |
| 114 | 114 | 0.558 |
| 115 | 115 | 0.0526 |
| 116 | 116 | 0.00774 |
| 117 | 117 | 0.723 |
| 118 | 118 | 0.628 |
| 119 | 119 | 0.447 |
| 12 | 12 | 0.485 |
| 120 | 120 | 0.939 |
| 121 | 121 | 0.748 |
| 122 | 122 | 0.848 |
| 123 | 123 | 0.445 |
| 124 | 124 | 0.111 |
| 125 | 125 | 0.953 |
| 126 | 126 | 0.346 |
| 127 | 127 | 0.0593 |
| 128 | 128 | 0.227 |
| 129 | 129 | 0.633 |
| 13 | 13 | 0.719 |
| 130 | 130 | 0.595 |
| 131 | 131 | 0.593 |
| 132 | 132 | 0.279 |
| 133 | 133 | 0.565 |
| 134 | 134 | 0.625 |
| 135 | 135 | 0.154 |
| 136 | 136 | 0.293 |
| 137 | 137 | 0.432 |
| 138 | 138 | 0.162 |
| 139 | 139 | 0.607 |
| 14 | 14 | 0.691 |
| 140 | 140 | 0.0876 |
| 141 | 141 | 0.719 |
| 142 | 142 | 0.0152 |
| 143 | 143 | 0.515 |
| 144 | 144 | 0.202 |
| 145 | 145 | 0.536 |
| 146 | 146 | 0.91 |
| 147 | 147 | 0.461 |
| 148 | 148 | 0.218 |
| 149 | 149 | 0.362 |
| 15 | 15 | 0.42 |
| 150 | 150 | 0.82 |
| 151 | 151 | 0.518 |
| 152 | 152 | 0.371 |
| 153 | 153 | 0.146 |
| 154 | 154 | 0.556 |
| 155 | 155 | 0.159 |
| 156 | 156 | 0.0798 |
| 157 | 157 | 0.33 |
| 158 | 158 | 0.316 |
| 159 | 159 | 0.157 |
| 16 | 16 | 0.148 |
| 160 | 160 | 0.774 |
| 161 | 161 | 0.0378 |
| 162 | 162 | 0.262 |
| 163 | 163 | 0.771 |
| 164 | 164 | 0.813 |
| 165 | 165 | 0.939 |
| 166 | 166 | 0.677 |
| 167 | 167 | 0.289 |
| 168 | 168 | 0.902 |
| 169 | 169 | 0.791 |
| 17 | 17 | 0.384 |
| 18 | 18 | 0.0257 |
| 19 | 19 | 0.221 |
| 2 | 2 | 0.349 |
| 20 | 20 | 0.229 |
| 21 | 21 | 0.906 |
| 22 | 22 | 0.499 |
| 23 | 23 | 0.703 |
| 24 | 24 | 0.348 |
| 25 | 25 | 0.213 |
| 26 | 26 | 0.0351 |
| 27 | 27 | 0.473 |
| 28 | 28 | 0.5 |
| 29 | 29 | 0.339 |
| 3 | 3 | 0.475 |
| 30 | 30 | 0.421 |
| 31 | 31 | 0.257 |
| 32 | 32 | 0.027 |
| 33 | 33 | 0.744 |
| 34 | 34 | 0.902 |
| 35 | 35 | 0.321 |
| 36 | 36 | 0.199 |
| 37 | 37 | 0.715 |
| 38 | 38 | 0.848 |
| 39 | 39 | 0.0952 |
| 4 | 4 | 0.0204 |
| 40 | 40 | 0.695 |
| 41 | 41 | 0.437 |
| 42 | 42 | 0.712 |
| 43 | 43 | 0.098 |
| 44 | 44 | 0.074 |
| 45 | 45 | 0.739 |
| 46 | 46 | 0.116 |
| 47 | 47 | 0.25 |
| 48 | 48 | 0.52 |
| 49 | 49 | 0.08 |
| 5 | 5 | 0.885 |
| 50 | 50 | 0.813 |
| 51 | 51 | 0.564 |
| 52 | 52 | 0.296 |
| 53 | 53 | 0.464 |
| 54 | 54 | 0.615 |
| 55 | 55 | 0.911 |
| 56 | 56 | 0.489 |
| 57 | 57 | 0.966 |
| 58 | 58 | 0.0411 |
| 59 | 59 | 0.145 |
| 6 | 6 | 0.294 |
| 60 | 60 | 0.0605 |
| 61 | 61 | 0.761 |
| 62 | 62 | 0.0102 |
| 63 | 63 | 0.278 |
| 64 | 64 | 0.0422 |
| 65 | 65 | 0.292 |
| 66 | 66 | 0.752 |
| 67 | 67 | 0.595 |
| 68 | 68 | 0.939 |
| 69 | 69 | 0.356 |
| 7 | 7 | 0.474 |
| 70 | 70 | 0.0327 |
| 71 | 71 | 0.117 |
| 72 | 72 | 0.546 |
| 73 | 73 | 0.251 |
| 74 | 74 | 0.487 |
| 75 | 75 | 0.707 |
| 76 | 76 | 0.861 |
| 77 | 77 | 0.164 |
| 78 | 78 | 0.571 |
| 79 | 79 | 0.631 |
| 8 | 8 | 0.315 |
| 80 | 80 | 0.434 |
| 81 | 81 | 0.226 |
| 82 | 82 | 0.291 |
| 83 | 83 | 0.512 |
| 84 | 84 | 0.745 |
| 85 | 85 | 0.0723 |
| 86 | 86 | 0.948 |
| 87 | 87 | 0.819 |
| 88 | 88 | 0.179 |
| 89 | 89 | 0.241 |
| 9 | 9 | 0.338 |
| 90 | 90 | 0.269 |
| 91 | 91 | 0.397 |
| 92 | 92 | 0.144 |
| 93 | 93 | 0.193 |
| 94 | 94 | 0.233 |
| 95 | 95 | 0.8 |
| 96 | 96 | 0.799 |
| 97 | 97 | 0.264 |
| 98 | 98 | 0.509 |
| 99 | 99 | 0.881 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11901
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000049 human lymphatic endothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002138 (endothelial cell of lymphatic vessel)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000049 (human lymphatic endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
CL:0005022 (vascular lymphangioblast)
