FF:10025-101D7: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005642 | ||
|HumanCAGEScanFiles=NCig10022;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008730;DRR009602;DRZ001027;DRZ002412;DRZ012377;DRZ013762 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002106,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0004177,UBERON:0005057,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002390,UBERON:0002417,UBERON:0002193,UBERON:0000916,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010025 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10025-101D7 | |id=FF:10025-101D7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010025 | ||
|is_obsolete= | |||
|library_id=CNhs10631 | |||
|library_id_phase_based=2:CNhs10631 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10025 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10025 | |||
|name=spleen, adult, pool1 | |name=spleen, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10022,,, | |profile_cagescan=NCig10022,,, | ||
|profile_hcage=CNhs10631,LSID657,release008,COMPLETED | |profile_hcage=CNhs10631,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -16 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -16 | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity=mixed | |sample_ethnicity=mixed | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.72671196854098e-247!GO:0005737;cytoplasm;1.11291446431401e-142!GO:0043227;membrane-bound organelle;1.40758720555518e-128!GO:0043231;intracellular membrane-bound organelle;1.90777990533456e-128!GO:0043226;organelle;7.65421436748825e-123!GO:0043229;intracellular organelle;1.61694686912786e-122!GO:0005515;protein binding;9.59662612667946e-105!GO:0044444;cytoplasmic part;2.49837774653045e-90!GO:0044422;organelle part;1.01091348935706e-73!GO:0044446;intracellular organelle part;2.60968210397942e-72!GO:0032991;macromolecular complex;1.50728397244584e-68!GO:0043170;macromolecule metabolic process;2.84798236822785e-57!GO:0005634;nucleus;6.4069367061753e-55!GO:0044238;primary metabolic process;6.60330564736918e-55!GO:0030529;ribonucleoprotein complex;7.5570086143011e-55!GO:0003723;RNA binding;8.51726468769671e-55!GO:0044237;cellular metabolic process;6.95962162108467e-53!GO:0044428;nuclear part;5.47794718218817e-52!GO:0043233;organelle lumen;1.93499358533317e-46!GO:0031974;membrane-enclosed lumen;1.93499358533317e-46!GO:0019538;protein metabolic process;1.54725601818889e-41!GO:0016043;cellular component organization and biogenesis;1.63663534742231e-41!GO:0033036;macromolecule localization;5.3498098296038e-41!GO:0015031;protein transport;3.49709293327615e-39!GO:0045184;establishment of protein localization;1.986987915864e-38!GO:0008104;protein localization;5.22141212302144e-38!GO:0006412;translation;2.12037221819522e-37!GO:0044260;cellular macromolecule metabolic process;5.88851199684147e-36!GO:0043234;protein complex;5.94221166041424e-36!GO:0044267;cellular protein metabolic process;1.64749120274769e-35!GO:0005829;cytosol;4.68207248948925e-33!GO:0005739;mitochondrion;7.16474993248754e-32!GO:0031981;nuclear lumen;1.01552169916244e-31!GO:0031090;organelle membrane;6.6958503050175e-31!GO:0006396;RNA processing;1.10640676685261e-30!GO:0043283;biopolymer metabolic process;2.18217670908744e-30!GO:0016071;mRNA metabolic process;3.81013289110095e-30!GO:0005840;ribosome;3.83064924850959e-30!GO:0065003;macromolecular complex assembly;5.52345081827398e-29!GO:0046907;intracellular transport;7.55441576313655e-29!GO:0010467;gene expression;1.74001218296625e-28!GO:0008380;RNA splicing;1.20461332096214e-27!GO:0006886;intracellular protein transport;3.23784162967221e-27!GO:0031967;organelle envelope;9.91299193923416e-27!GO:0031975;envelope;1.85901302745017e-26!GO:0003735;structural constituent of ribosome;3.09940472885525e-26!GO:0009059;macromolecule biosynthetic process;1.61350352135144e-25!GO:0022607;cellular component assembly;2.81913444986955e-25!GO:0006397;mRNA processing;1.4642924554788e-24!GO:0033279;ribosomal subunit;5.86228021534979e-24!GO:0012501;programmed cell death;9.36197737239021e-23!GO:0006915;apoptosis;1.120354862861e-22!GO:0044429;mitochondrial part;1.34258930645745e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.46982010252836e-22!GO:0008134;transcription factor binding;6.76698951982174e-22!GO:0051649;establishment of cellular localization;1.71269569526934e-21!GO:0044249;cellular biosynthetic process;1.71269569526934e-21!GO:0051641;cellular localization;2.59526268368334e-21!GO:0008219;cell death;2.69897986049126e-21!GO:0016265;death;2.69897986049126e-21!GO:0005654;nucleoplasm;6.34838365188385e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.80263320519198e-20!GO:0005681;spliceosome;3.3950988787445e-20!GO:0009058;biosynthetic process;6.41094698453972e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.16910529946882e-20!GO:0006996;organelle organization and biogenesis;1.64731323222813e-19!GO:0044445;cytosolic part;1.27949594085099e-18!GO:0000166;nucleotide binding;3.44531207198439e-17!GO:0048770;pigment granule;3.62277273531301e-17!GO:0042470;melanosome;3.62277273531301e-17!GO:0044451;nucleoplasm part;3.76223706701999e-17!GO:0002376;immune system process;2.15666112179975e-16!GO:0016192;vesicle-mediated transport;5.3251406327297e-16!GO:0050794;regulation of cellular process;7.42266877676179e-16!GO:0006119;oxidative phosphorylation;8.78573788558302e-16!GO:0005740;mitochondrial envelope;9.54331208117913e-16!GO:0022618;protein-RNA complex assembly;3.13785465988029e-15!GO:0048523;negative regulation of cellular process;4.54029467787051e-15!GO:0031966;mitochondrial membrane;5.8518479710512e-15!GO:0044265;cellular macromolecule catabolic process;6.10814712023653e-15!GO:0019866;organelle inner membrane;8.20429999853271e-15!GO:0005794;Golgi apparatus;8.77529736520856e-15!GO:0006259;DNA metabolic process;1.82693316549406e-14!GO:0050789;regulation of biological process;3.67684707140077e-14!GO:0042981;regulation of apoptosis;8.52866038204473e-14!GO:0006605;protein targeting;1.00945964636816e-13!GO:0043285;biopolymer catabolic process;1.01046137373071e-13!GO:0003712;transcription cofactor activity;1.04498046024142e-13!GO:0015935;small ribosomal subunit;1.08060610542818e-13!GO:0003676;nucleic acid binding;1.41492091051241e-13!GO:0043067;regulation of programmed cell death;1.43439363372867e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;2.23403513050237e-13!GO:0043228;non-membrane-bound organelle;2.58410507748705e-13!GO:0043232;intracellular non-membrane-bound organelle;2.58410507748705e-13!GO:0005743;mitochondrial inner membrane;2.97122474612759e-13!GO:0019941;modification-dependent protein catabolic process;3.41611321982436e-13!GO:0043632;modification-dependent macromolecule catabolic process;3.41611321982436e-13!GO:0048519;negative regulation of biological process;3.67468753217935e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.69979089230814e-13!GO:0016462;pyrophosphatase activity;3.97116304810272e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.97116304810272e-13!GO:0006511;ubiquitin-dependent protein catabolic process;4.55492622120894e-13!GO:0012505;endomembrane system;5.26256226631976e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;5.66815475775726e-13!GO:0032553;ribonucleotide binding;6.07243492390668e-13!GO:0032555;purine ribonucleotide binding;6.07243492390668e-13!GO:0044257;cellular protein catabolic process;6.58505779048007e-13!GO:0016604;nuclear body;9.60498414571828e-13!GO:0017111;nucleoside-triphosphatase activity;9.64530270701717e-13!GO:0007243;protein kinase cascade;1.02524608855748e-12!GO:0006913;nucleocytoplasmic transport;1.20373155768201e-12!GO:0051169;nuclear transport;3.54078039132119e-12!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.64703486332444e-12!GO:0016070;RNA metabolic process;3.90297298317624e-12!GO:0006950;response to stress;4.01201959900856e-12!GO:0017076;purine nucleotide binding;4.46239699638696e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.46239699638696e-12!GO:0009057;macromolecule catabolic process;4.46239699638696e-12!GO:0005635;nuclear envelope;5.64396146956098e-12!GO:0006457;protein folding;7.45349857460994e-12!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.00001203597452e-12!GO:0043412;biopolymer modification;8.7575813187903e-12!GO:0005783;endoplasmic reticulum;9.57733391241751e-12!GO:0044455;mitochondrial membrane part;1.814973799281e-11!GO:0006955;immune response;1.85413751214879e-11!GO:0008135;translation factor activity, nucleic acid binding;2.5093607682849e-11!GO:0015934;large ribosomal subunit;2.77855317786542e-11!GO:0005730;nucleolus;3.25453397369231e-11!GO:0065007;biological regulation;4.18449739910024e-11!GO:0051246;regulation of protein metabolic process;4.19613170575625e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.0915114440201e-11!GO:0048193;Golgi vesicle transport;5.66498805698972e-11!GO:0030163;protein catabolic process;6.48777017665372e-11!GO:0006461;protein complex assembly;6.75904605373763e-11!GO:0006793;phosphorus metabolic process;6.75904605373763e-11!GO:0006796;phosphate metabolic process;6.75904605373763e-11!GO:0043687;post-translational protein modification;7.60946698778646e-11!GO:0016874;ligase activity;8.09813660566994e-11!GO:0006464;protein modification process;8.64983300512396e-11!GO:0006366;transcription from RNA polymerase II promoter;8.6664978332187e-11!GO:0044248;cellular catabolic process;9.50272509308644e-11!GO:0006512;ubiquitin cycle;9.71459737062909e-11!GO:0005746;mitochondrial respiratory chain;9.94923930646177e-11!GO:0007242;intracellular signaling cascade;1.24869342839414e-10!GO:0048518;positive regulation of biological process;1.48251692545295e-10!GO:0016607;nuclear speck;1.67997414203853e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.7055495662599e-10!GO:0050136;NADH dehydrogenase (quinone) activity;2.107332439858e-10!GO:0003954;NADH dehydrogenase activity;2.107332439858e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.107332439858e-10!GO:0019899;enzyme binding;2.56748467395739e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.06787642966643e-10!GO:0000375;RNA splicing, via transesterification reactions;3.06787642966643e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.06787642966643e-10!GO:0048522;positive regulation of cellular process;3.8996921256676e-10!GO:0031965;nuclear membrane;4.15671596019011e-10!GO:0003743;translation initiation factor activity;7.45334801020033e-10!GO:0008565;protein transporter activity;9.5973060141154e-10!GO:0006446;regulation of translational initiation;9.83648000152901e-10!GO:0006413;translational initiation;1.0172194987209e-09!GO:0016310;phosphorylation;1.17689023685948e-09!GO:0043069;negative regulation of programmed cell death;1.20290418084251e-09!GO:0005773;vacuole;1.58111250784933e-09!GO:0006916;anti-apoptosis;1.95114745059936e-09!GO:0043066;negative regulation of apoptosis;2.00193665099107e-09!GO:0007264;small GTPase mediated signal transduction;2.19773073255002e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.52863144078216e-09!GO:0000323;lytic vacuole;2.82219346857397e-09!GO:0005764;lysosome;2.82219346857397e-09!GO:0005524;ATP binding;3.8158248370307e-09!GO:0031980;mitochondrial lumen;3.8158248370307e-09!GO:0005759;mitochondrial matrix;3.8158248370307e-09!GO:0051082;unfolded protein binding;4.42716240315153e-09!GO:0032559;adenyl ribonucleotide binding;6.03354450405842e-09!GO:0017038;protein import;7.91358374868896e-09!GO:0042775;organelle ATP synthesis coupled electron transport;1.17334739857448e-08!GO:0042773;ATP synthesis coupled electron transport;1.17334739857448e-08!GO:0030964;NADH dehydrogenase complex (quinone);1.47484265362811e-08!GO:0045271;respiratory chain complex I;1.47484265362811e-08!GO:0005747;mitochondrial respiratory chain complex I;1.47484265362811e-08!GO:0005768;endosome;1.81109664893308e-08!GO:0016564;transcription repressor activity;1.94649613159507e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.54607164755281e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.6451598793409e-08!GO:0005793;ER-Golgi intermediate compartment;3.43674590821248e-08!GO:0003713;transcription coactivator activity;3.44951982045175e-08!GO:0008639;small protein conjugating enzyme activity;3.46832015864888e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.68841046179594e-08!GO:0030554;adenyl nucleotide binding;4.31348895531394e-08!GO:0044453;nuclear membrane part;5.44580316779335e-08!GO:0030036;actin cytoskeleton organization and biogenesis;5.59530468815533e-08!GO:0004842;ubiquitin-protein ligase activity;5.96535795301628e-08!GO:0016044;membrane organization and biogenesis;6.91550897952225e-08!GO:0051170;nuclear import;8.56925613819094e-08!GO:0030695;GTPase regulator activity;8.56925613819094e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.96358916145243e-08!GO:0031982;vesicle;1.05614906929621e-07!GO:0044432;endoplasmic reticulum part;1.29559182268506e-07!GO:0031324;negative regulation of cellular metabolic process;1.32399923083068e-07!GO:0006606;protein import into nucleus;1.33538276648207e-07!GO:0006323;DNA packaging;1.3557489956283e-07!GO:0009966;regulation of signal transduction;1.39986140247226e-07!GO:0007049;cell cycle;1.63314380145668e-07!GO:0051276;chromosome organization and biogenesis;2.06950880526222e-07!GO:0031252;leading edge;2.22744040273032e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.37925224776593e-07!GO:0005761;mitochondrial ribosome;2.43312505025493e-07!GO:0000313;organellar ribosome;2.43312505025493e-07!GO:0019787;small conjugating protein ligase activity;2.44150600111116e-07!GO:0008047;enzyme activator activity;3.31024206128446e-07!GO:0031410;cytoplasmic vesicle;3.50967509265558e-07!GO:0009967;positive regulation of signal transduction;4.53744719490494e-07!GO:0016563;transcription activator activity;5.0049229496183e-07!GO:0051186;cofactor metabolic process;5.96161517664823e-07!GO:0019829;cation-transporting ATPase activity;6.38810665725105e-07!GO:0005525;GTP binding;6.80475955185199e-07!GO:0003924;GTPase activity;7.21480572544674e-07!GO:0005770;late endosome;7.58437646007283e-07!GO:0048475;coated membrane;8.13901043314551e-07!GO:0030117;membrane coat;8.13901043314551e-07!GO:0009615;response to virus;8.93992233803508e-07!GO:0005643;nuclear pore;1.25165214648392e-06!GO:0031988;membrane-bound vesicle;1.26442421512366e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.30331274203254e-06!GO:0015986;ATP synthesis coupled proton transport;1.36467672595535e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.36467672595535e-06!GO:0030029;actin filament-based process;1.5111461260363e-06!GO:0007265;Ras protein signal transduction;1.58766437551224e-06!GO:0006403;RNA localization;1.66079680871231e-06!GO:0050657;nucleic acid transport;1.67703541986508e-06!GO:0051236;establishment of RNA localization;1.67703541986508e-06!GO:0050658;RNA transport;1.67703541986508e-06!GO:0004386;helicase activity;1.81491552830132e-06!GO:0003714;transcription corepressor activity;1.8605469167693e-06!GO:0009892;negative regulation of metabolic process;2.02512241760507e-06!GO:0065009;regulation of a molecular function;2.24635997228305e-06!GO:0009150;purine ribonucleotide metabolic process;3.09057826575008e-06!GO:0005096;GTPase activator activity;3.12300331773118e-06!GO:0009060;aerobic respiration;3.17219284864453e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.18277912075104e-06!GO:0009056;catabolic process;3.21482525242057e-06!GO:0042254;ribosome biogenesis and assembly;3.21482525242057e-06!GO:0042623;ATPase activity, coupled;3.3221364474702e-06!GO:0009259;ribonucleotide metabolic process;3.36294734025992e-06!GO:0006333;chromatin assembly or disassembly;3.51382138988728e-06!GO:0016481;negative regulation of transcription;3.52133916136306e-06!GO:0016887;ATPase activity;3.96635812904251e-06!GO:0006163;purine nucleotide metabolic process;3.96635812904251e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.05960703578063e-06!GO:0030120;vesicle coat;4.21962816961689e-06!GO:0030662;coated vesicle membrane;4.21962816961689e-06!GO:0044440;endosomal part;4.9137706371242e-06!GO:0010008;endosome membrane;4.9137706371242e-06!GO:0006888;ER to Golgi vesicle-mediated transport;5.95127853810123e-06!GO:0009152;purine ribonucleotide biosynthetic process;6.60224888750465e-06!GO:0004298;threonine endopeptidase activity;7.07711101980341e-06!GO:0008026;ATP-dependent helicase activity;7.25768410306754e-06!GO:0016568;chromatin modification;7.32688442118082e-06!GO:0032561;guanyl ribonucleotide binding;7.38175474565377e-06!GO:0019001;guanyl nucleotide binding;7.38175474565377e-06!GO:0016881;acid-amino acid ligase activity;8.21526830371882e-06!GO:0009055;electron carrier activity;8.97546301489239e-06!GO:0006164;purine nucleotide biosynthetic process;9.06990117257568e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.86317300795755e-06!GO:0046930;pore complex;1.0104834191808e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.08183942577686e-05!GO:0043566;structure-specific DNA binding;1.09728153450221e-05!GO:0006417;regulation of translation;1.13731151517359e-05!GO:0006974;response to DNA damage stimulus;1.31862621497239e-05!GO:0045333;cellular respiration;1.3597783356703e-05!GO:0009260;ribonucleotide biosynthetic process;1.3597783356703e-05!GO:0003697;single-stranded DNA binding;1.39185492910863e-05!GO:0065002;intracellular protein transport across a membrane;1.39595729665796e-05!GO:0032446;protein modification by small protein conjugation;1.43148538225004e-05!GO:0005083;small GTPase regulator activity;1.44247910980111e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.47325999864051e-05!GO:0065004;protein-DNA complex assembly;1.53509217833876e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.55997883620148e-05!GO:0044431;Golgi apparatus part;1.60767638626965e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.6168259708699e-05!GO:0051726;regulation of cell cycle;1.66860720117085e-05!GO:0006732;coenzyme metabolic process;1.73272639661725e-05!GO:0000074;regulation of progression through cell cycle;1.75602807394033e-05!GO:0002768;immune response-regulating cell surface receptor signaling pathway;1.78776711981343e-05!GO:0043065;positive regulation of apoptosis;1.85930487938153e-05!GO:0006099;tricarboxylic acid cycle;1.88165468163391e-05!GO:0046356;acetyl-CoA catabolic process;1.88165468163391e-05!GO:0006613;cotranslational protein targeting to membrane;1.89916402403895e-05!GO:0000785;chromatin;1.93017482916794e-05!GO:0016567;protein ubiquitination;1.9769140871259e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.99277383438455e-05!GO:0002764;immune response-regulating signal transduction;2.25618055718762e-05!GO:0046649;lymphocyte activation;2.48884838998856e-05!GO:0005789;endoplasmic reticulum membrane;2.66550230029889e-05!GO:0019222;regulation of metabolic process;2.66550230029889e-05!GO:0000245;spliceosome assembly;2.71389029717668e-05!GO:0016197;endosome transport;2.81046493936441e-05!GO:0051028;mRNA transport;2.82993456952152e-05!GO:0043068;positive regulation of programmed cell death;2.92818634773322e-05!GO:0006754;ATP biosynthetic process;2.97501983667147e-05!GO:0006753;nucleoside phosphate metabolic process;2.97501983667147e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.98131554900502e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.98131554900502e-05!GO:0015078;hydrogen ion transmembrane transporter activity;3.04038006620463e-05!GO:0009199;ribonucleoside triphosphate metabolic process;3.1050533356121e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.1050533356121e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.1050533356121e-05!GO:0009142;nucleoside triphosphate biosynthetic process;3.33962821092604e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.33962821092604e-05!GO:0045321;leukocyte activation;3.53190839714972e-05!GO:0009141;nucleoside triphosphate metabolic process;3.68815000460592e-05!GO:0002429;immune response-activating cell surface receptor signaling pathway;3.68815000460592e-05!GO:0046034;ATP metabolic process;3.7497289460587e-05!GO:0048468;cell development;3.94937041046277e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.9645125288556e-05!GO:0002757;immune response-activating signal transduction;4.62902152985553e-05!GO:0005694;chromosome;4.70780569708971e-05!GO:0048471;perinuclear region of cytoplasm;4.90021368502445e-05!GO:0008092;cytoskeletal protein binding;5.66685657477477e-05!GO:0045259;proton-transporting ATP synthase complex;5.67132982971472e-05!GO:0051187;cofactor catabolic process;5.90892680383051e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.22174745971924e-05!GO:0044427;chromosomal part;6.59965480685173e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.77087425716367e-05!GO:0045786;negative regulation of progression through cell cycle;7.26793925569741e-05!GO:0006897;endocytosis;8.39194305032279e-05!GO:0010324;membrane invagination;8.39194305032279e-05!GO:0003724;RNA helicase activity;0.000102847939722271!GO:0045892;negative regulation of transcription, DNA-dependent;0.000106757205487361!GO:0006084;acetyl-CoA metabolic process;0.000109992039415791!GO:0022402;cell cycle process;0.000111256657360986!GO:0006917;induction of apoptosis;0.000119820029220993!GO:0031326;regulation of cellular biosynthetic process;0.000125720139874125!GO:0006401;RNA catabolic process;0.000161832505859323!GO:0005798;Golgi-associated vesicle;0.00017471119050021!GO:0000151;ubiquitin ligase complex;0.000178452654009991!GO:0012502;induction of programmed cell death;0.000180195353348059!GO:0009109;coenzyme catabolic process;0.000184144549104079!GO:0002253;activation of immune response;0.000184144549104079!GO:0030097;hemopoiesis;0.000205831957646229!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000253117801698226!GO:0004812;aminoacyl-tRNA ligase activity;0.000253117801698226!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000253117801698226!GO:0009719;response to endogenous stimulus;0.000260599661856228!GO:0005885;Arp2/3 protein complex;0.000261846491610267!GO:0050851;antigen receptor-mediated signaling pathway;0.000263076535945658!GO:0005774;vacuolar membrane;0.000272770158494744!GO:0051168;nuclear export;0.00027778548233745!GO:0009897;external side of plasma membrane;0.000282361249932826!GO:0006364;rRNA processing;0.000311945886065893!GO:0006281;DNA repair;0.000316521898806152!GO:0051427;hormone receptor binding;0.000317106009664359!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000319941410568739!GO:0008283;cell proliferation;0.000321400522739785!GO:0042110;T cell activation;0.000327323118007657!GO:0060090;molecular adaptor activity;0.000333285471910378!GO:0006954;inflammatory response;0.000353676538191865!GO:0001775;cell activation;0.000371353226232791!GO:0043038;amino acid activation;0.000398740419363237!GO:0006418;tRNA aminoacylation for protein translation;0.000398740419363237!GO:0043039;tRNA aminoacylation;0.000398740419363237!GO:0009889;regulation of biosynthetic process;0.000412802338675448!GO:0030133;transport vesicle;0.000415075800391281!GO:0019904;protein domain specific binding;0.000420712599710816!GO:0005765;lysosomal membrane;0.000436342404954375!GO:0050790;regulation of catalytic activity;0.000443618674075157!GO:0016072;rRNA metabolic process;0.00045410410007495!GO:0016787;hydrolase activity;0.000454268101760626!GO:0005057;receptor signaling protein activity;0.000456664895048251!GO:0030118;clathrin coat;0.000492771751629567!GO:0002520;immune system development;0.000507052814935361!GO:0006612;protein targeting to membrane;0.000518885706379648!GO:0018193;peptidyl-amino acid modification;0.000520130148467691!GO:0001726;ruffle;0.000572983529892116!GO:0035257;nuclear hormone receptor binding;0.000595366599196345!GO:0051188;cofactor biosynthetic process;0.000619781970289995!GO:0000139;Golgi membrane;0.000638058693623528!GO:0030027;lamellipodium;0.000658020459785778!GO:0006402;mRNA catabolic process;0.000663470665120314!GO:0005667;transcription factor complex;0.000676351432760638!GO:0008361;regulation of cell size;0.000678112757468582!GO:0002250;adaptive immune response;0.000678112757468582!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.000678112757468582!GO:0030041;actin filament polymerization;0.000745170618679948!GO:0006334;nucleosome assembly;0.000759699255444688!GO:0002443;leukocyte mediated immunity;0.000794584829064343!GO:0043623;cellular protein complex assembly;0.000807705931184564!GO:0048534;hemopoietic or lymphoid organ development;0.000808522088067841!GO:0006260;DNA replication;0.000853087604192337!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.000920203240984813!GO:0031902;late endosome membrane;0.000938856750627561!GO:0001558;regulation of cell growth;0.000994243811627467!GO:0016049;cell growth;0.00104934692924793!GO:0008632;apoptotic program;0.00107562470935402!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00108418732494688!GO:0005769;early endosome;0.00113391199704424!GO:0051789;response to protein stimulus;0.00113391199704424!GO:0006986;response to unfolded protein;0.00113391199704424!GO:0019843;rRNA binding;0.00116622955037647!GO:0032940;secretion by cell;0.00117176562169399!GO:0030867;rough endoplasmic reticulum membrane;0.00121919874532979!GO:0003690;double-stranded DNA binding;0.0012319102397089!GO:0044437;vacuolar part;0.00124069772838048!GO:0008186;RNA-dependent ATPase activity;0.00127167985296572!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00128132426203726!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00128562391873615!GO:0009607;response to biotic stimulus;0.00130700539242378!GO:0009893;positive regulation of metabolic process;0.00135917060078966!GO:0005070;SH3/SH2 adaptor activity;0.00136459427156834!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00139051408444884!GO:0005099;Ras GTPase activator activity;0.00144583641741494!GO:0005788;endoplasmic reticulum lumen;0.00145207078008732!GO:0005791;rough endoplasmic reticulum;0.00147737629643002!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00151535202712531!GO:0031497;chromatin assembly;0.00151821535893862!GO:0031323;regulation of cellular metabolic process;0.00166106028966443!GO:0043021;ribonucleoprotein binding;0.00169427936738468!GO:0051251;positive regulation of lymphocyte activation;0.00170637759255447!GO:0051336;regulation of hydrolase activity;0.00171032136030743!GO:0009108;coenzyme biosynthetic process;0.00173112420710782!GO:0007005;mitochondrion organization and biogenesis;0.00177054694615921!GO:0005813;centrosome;0.00184277841314109!GO:0033673;negative regulation of kinase activity;0.00185627598241115!GO:0006469;negative regulation of protein kinase activity;0.00185627598241115!GO:0006399;tRNA metabolic process;0.00188539305000388!GO:0045045;secretory pathway;0.0018925083377493!GO:0003779;actin binding;0.00197938345210838!GO:0002449;lymphocyte mediated immunity;0.00203831746897153!GO:0009117;nucleotide metabolic process;0.00229369847830684!GO:0019724;B cell mediated immunity;0.00240785841293127!GO:0002252;immune effector process;0.00245686984384432!GO:0016064;immunoglobulin mediated immune response;0.00248899141805341!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00252063620710891!GO:0006607;NLS-bearing substrate import into nucleus;0.00256791952973691!GO:0033116;ER-Golgi intermediate compartment membrane;0.00266136057827994!GO:0042613;MHC class II protein complex;0.00272436945682901!GO:0050853;B cell receptor signaling pathway;0.00282401363584099!GO:0030119;AP-type membrane coat adaptor complex;0.00308586914520919!GO:0042802;identical protein binding;0.00314650108351021!GO:0015036;disulfide oxidoreductase activity;0.00316403631590079!GO:0008154;actin polymerization and/or depolymerization;0.00318365974735495!GO:0046822;regulation of nucleocytoplasmic transport;0.00322023704562333!GO:0051920;peroxiredoxin activity;0.00322023704562333!GO:0030131;clathrin adaptor complex;0.0032507473057575!GO:0007229;integrin-mediated signaling pathway;0.00327238558003381!GO:0009611;response to wounding;0.0033568772527161!GO:0035258;steroid hormone receptor binding;0.00343221554351515!GO:0043488;regulation of mRNA stability;0.00346046004036881!GO:0043487;regulation of RNA stability;0.00346046004036881!GO:0004004;ATP-dependent RNA helicase activity;0.00348348044045029!GO:0005905;coated pit;0.00369421600061015!GO:0008250;oligosaccharyl transferase complex;0.00370187003678323!GO:0051348;negative regulation of transferase activity;0.00384574537166811!GO:0047485;protein N-terminus binding;0.00390273613420268!GO:0042113;B cell activation;0.00394515774322445!GO:0005741;mitochondrial outer membrane;0.00398636185680305!GO:0051252;regulation of RNA metabolic process;0.0039969236508457!GO:0016363;nuclear matrix;0.00410610576831002!GO:0006752;group transfer coenzyme metabolic process;0.00413407033260883!GO:0030658;transport vesicle membrane;0.00423086836518664!GO:0019867;outer membrane;0.00437000291980632!GO:0048500;signal recognition particle;0.00437000291980632!GO:0031968;organelle outer membrane;0.00437000291980632!GO:0051235;maintenance of localization;0.00441254471877053!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00441254471877053!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00441254471877053!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00441254471877053!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00441254471877053!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00446216132926124!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00446697293794431!GO:0003729;mRNA binding;0.00459129279551723!GO:0006611;protein export from nucleus;0.00460633921241056!GO:0005100;Rho GTPase activator activity;0.00469250647086311!GO:0006468;protein amino acid phosphorylation;0.00475434246877275!GO:0001772;immunological synapse;0.00479244149724028!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00480287600736337!GO:0045121;lipid raft;0.00483229082824429!GO:0007010;cytoskeleton organization and biogenesis;0.00496491192861255!GO:0008286;insulin receptor signaling pathway;0.0050304429039284!GO:0007266;Rho protein signal transduction;0.00513390049656576!GO:0006891;intra-Golgi vesicle-mediated transport;0.00516285849058309!GO:0045454;cell redox homeostasis;0.00531115446594231!GO:0030100;regulation of endocytosis;0.0055905188991005!GO:0004576;oligosaccharyl transferase activity;0.00567231655329331!GO:0043087;regulation of GTPase activity;0.00603384145755578!GO:0030518;steroid hormone receptor signaling pathway;0.00612623450708833!GO:0045941;positive regulation of transcription;0.00617704509276232!GO:0001816;cytokine production;0.0062110046373484!GO:0003702;RNA polymerase II transcription factor activity;0.00626234575641681!GO:0005048;signal sequence binding;0.00634182996595324!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00730533614491986!GO:0016584;nucleosome positioning;0.00734205674382779!GO:0002682;regulation of immune system process;0.00748779927113939!GO:0005815;microtubule organizing center;0.00763535858512635!GO:0045893;positive regulation of transcription, DNA-dependent;0.00768538835598374!GO:0031072;heat shock protein binding;0.0078451831757472!GO:0051087;chaperone binding;0.00791273916793819!GO:0008139;nuclear localization sequence binding;0.00804195484273286!GO:0007040;lysosome organization and biogenesis;0.00813232227279614!GO:0030521;androgen receptor signaling pathway;0.008136197174949!GO:0050900;leukocyte migration;0.00814903760663943!GO:0008654;phospholipid biosynthetic process;0.00825607115301516!GO:0030384;phosphoinositide metabolic process;0.00872217399808395!GO:0017166;vinculin binding;0.00872217399808395!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00888666715734287!GO:0045047;protein targeting to ER;0.00888666715734287!GO:0002684;positive regulation of immune system process;0.00890059086204069!GO:0030127;COPII vesicle coat;0.00902368909471233!GO:0012507;ER to Golgi transport vesicle membrane;0.00902368909471233!GO:0005762;mitochondrial large ribosomal subunit;0.00914873276768191!GO:0000315;organellar large ribosomal subunit;0.00914873276768191!GO:0000278;mitotic cell cycle;0.00925357071975966!GO:0046983;protein dimerization activity;0.0093161970441244!GO:0006650;glycerophospholipid metabolic process;0.0093161970441244!GO:0016301;kinase activity;0.00933483904467786!GO:0022415;viral reproductive process;0.00956120476180037!GO:0031325;positive regulation of cellular metabolic process;0.00957739419663008!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0100309845748846!GO:0002521;leukocyte differentiation;0.0100846483944871!GO:0030132;clathrin coat of coated pit;0.0105608059902596!GO:0051223;regulation of protein transport;0.0111139291666984!GO:0045792;negative regulation of cell size;0.0113790987262792!GO:0007034;vacuolar transport;0.0114263972309176!GO:0019838;growth factor binding;0.01144106679247!GO:0006984;ER-nuclear signaling pathway;0.0116159607922953!GO:0051249;regulation of lymphocyte activation;0.0120951774060712!GO:0030660;Golgi-associated vesicle membrane;0.0124026771989675!GO:0050865;regulation of cell activation;0.0125973555601586!GO:0030134;ER to Golgi transport vesicle;0.013021018510254!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.013021018510254!GO:0018196;peptidyl-asparagine modification;0.0130614337598023!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0130614337598023!GO:0007165;signal transduction;0.0131346970354171!GO:0043681;protein import into mitochondrion;0.0131346970354171!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0131493052066019!GO:0016779;nucleotidyltransferase activity;0.0134117382910757!GO:0050778;positive regulation of immune response;0.0136178171881778!GO:0006959;humoral immune response;0.0136178171881778!GO:0051049;regulation of transport;0.0136178171881778!GO:0030308;negative regulation of cell growth;0.0137579387923813!GO:0022890;inorganic cation transmembrane transporter activity;0.0138063064488957!GO:0015980;energy derivation by oxidation of organic compounds;0.0138063064488957!GO:0004177;aminopeptidase activity;0.0141561773340223!GO:0051056;regulation of small GTPase mediated signal transduction;0.0142868846356047!GO:0016859;cis-trans isomerase activity;0.0144075904756434!GO:0051098;regulation of binding;0.0145245764368749!GO:0016791;phosphoric monoester hydrolase activity;0.0147781423758255!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0147781423758255!GO:0015399;primary active transmembrane transporter activity;0.0147781423758255!GO:0051128;regulation of cellular component organization and biogenesis;0.0152250560461429!GO:0050852;T cell receptor signaling pathway;0.0153151562998393!GO:0051338;regulation of transferase activity;0.0157495856335497!GO:0000059;protein import into nucleus, docking;0.0158392628858922!GO:0005637;nuclear inner membrane;0.0158573367533314!GO:0008234;cysteine-type peptidase activity;0.0159362091999174!GO:0043549;regulation of kinase activity;0.0161306980376017!GO:0008312;7S RNA binding;0.0161581170570963!GO:0035035;histone acetyltransferase binding;0.0166511407357908!GO:0001887;selenium metabolic process;0.0168181467000026!GO:0030833;regulation of actin filament polymerization;0.0169538082921796!GO:0006509;membrane protein ectodomain proteolysis;0.0169749951375014!GO:0033619;membrane protein proteolysis;0.0169749951375014!GO:0050870;positive regulation of T cell activation;0.0170060610877287!GO:0043086;negative regulation of catalytic activity;0.0173541375740905!GO:0006979;response to oxidative stress;0.0176433192531048!GO:0001817;regulation of cytokine production;0.0176433192531048!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0176508591330222!GO:0040008;regulation of growth;0.0177116607429357!GO:0030099;myeloid cell differentiation;0.0180404282945482!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0182650403567225!GO:0050776;regulation of immune response;0.0182681792123437!GO:0007033;vacuole organization and biogenesis;0.0186492053839818!GO:0051101;regulation of DNA binding;0.0193917762729257!GO:0030176;integral to endoplasmic reticulum membrane;0.0196471130470193!GO:0016740;transferase activity;0.0196471130470193!GO:0006026;aminoglycan catabolic process;0.0197734295885073!GO:0006027;glycosaminoglycan catabolic process;0.0197734295885073!GO:0030663;COPI coated vesicle membrane;0.0199523399301075!GO:0030126;COPI vesicle coat;0.0199523399301075!GO:0006376;mRNA splice site selection;0.0200895980080485!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0200895980080485!GO:0045637;regulation of myeloid cell differentiation;0.0201298523617797!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0217126935298092!GO:0045309;protein phosphorylated amino acid binding;0.0219865587145101!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0220758528470937!GO:0051092;activation of NF-kappaB transcription factor;0.0222089723199983!GO:0051090;regulation of transcription factor activity;0.0222311143529444!GO:0004674;protein serine/threonine kinase activity;0.022292580034127!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0223905703747081!GO:0006818;hydrogen transport;0.0224024979424386!GO:0005862;muscle thin filament tropomyosin;0.0224136354639712!GO:0031901;early endosome membrane;0.0235479168974133!GO:0050854;regulation of antigen receptor-mediated signaling pathway;0.0236346194695575!GO:0006414;translational elongation;0.023650503072393!GO:0010468;regulation of gene expression;0.0236661568070944!GO:0051051;negative regulation of transport;0.0237213836357267!GO:0015992;proton transport;0.0244003629719693!GO:0043407;negative regulation of MAP kinase activity;0.0244040493674209!GO:0045859;regulation of protein kinase activity;0.0249667744352222!GO:0001666;response to hypoxia;0.0250971371907803!GO:0007041;lysosomal transport;0.0251598788489422!GO:0006892;post-Golgi vesicle-mediated transport;0.0251598788489422!GO:0004197;cysteine-type endopeptidase activity;0.0255886471035379!GO:0001819;positive regulation of cytokine production;0.0259067610099293!GO:0046578;regulation of Ras protein signal transduction;0.0263869711422707!GO:0005684;U2-dependent spliceosome;0.026419092181623!GO:0006352;transcription initiation;0.0264907617898435!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0266197655749025!GO:0007006;mitochondrial membrane organization and biogenesis;0.026737896756689!GO:0030522;intracellular receptor-mediated signaling pathway;0.0272872992598258!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.0272883957995792!GO:0030433;ER-associated protein catabolic process;0.0273172565486229!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0273172565486229!GO:0005521;lamin binding;0.0281603526328881!GO:0003725;double-stranded RNA binding;0.0285513368799039!GO:0006595;polyamine metabolic process;0.0287485975924164!GO:0004185;serine carboxypeptidase activity;0.0287485975924164!GO:0050863;regulation of T cell activation;0.0289303801840678!GO:0000786;nucleosome;0.028961015435598!GO:0006338;chromatin remodeling;0.0297250964930279!GO:0005085;guanyl-nucleotide exchange factor activity;0.0297250964930279!GO:0033367;protein localization in mast cell secretory granule;0.0297250964930279!GO:0033365;protein localization in organelle;0.0297250964930279!GO:0033371;T cell secretory granule organization and biogenesis;0.0297250964930279!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0297250964930279!GO:0033375;protease localization in T cell secretory granule;0.0297250964930279!GO:0042629;mast cell granule;0.0297250964930279!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0297250964930279!GO:0033364;mast cell secretory granule organization and biogenesis;0.0297250964930279!GO:0033380;granzyme B localization in T cell secretory granule;0.0297250964930279!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0297250964930279!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0297250964930279!GO:0033368;protease localization in mast cell secretory granule;0.0297250964930279!GO:0033366;protein localization in secretory granule;0.0297250964930279!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0297250964930279!GO:0033374;protein localization in T cell secretory granule;0.0297250964930279!GO:0001784;phosphotyrosine binding;0.0298695352365698!GO:0032763;regulation of mast cell cytokine production;0.0298695352365698!GO:0032762;mast cell cytokine production;0.0298695352365698!GO:0042287;MHC protein binding;0.0304229556248103!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0304618265654678!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0305561152133721!GO:0000314;organellar small ribosomal subunit;0.0305561152133721!GO:0005763;mitochondrial small ribosomal subunit;0.0305561152133721!GO:0019900;kinase binding;0.0311974374512453!GO:0031625;ubiquitin protein ligase binding;0.0313341575934559!GO:0015035;protein disulfide oxidoreductase activity;0.0315281458256745!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0317965956535341!GO:0016311;dephosphorylation;0.031997323022192!GO:0043492;ATPase activity, coupled to movement of substances;0.0322455983259504!GO:0030137;COPI-coated vesicle;0.0324366481498271!GO:0045920;negative regulation of exocytosis;0.0324880996911151!GO:0043301;negative regulation of leukocyte degranulation;0.0324880996911151!GO:0043305;negative regulation of mast cell degranulation;0.0324880996911151!GO:0048487;beta-tubulin binding;0.0326888059015267!GO:0016605;PML body;0.0328342305717934!GO:0051219;phosphoprotein binding;0.0330076902919999!GO:0000118;histone deacetylase complex;0.0334153836590636!GO:0005869;dynactin complex;0.0339770258792805!GO:0030674;protein binding, bridging;0.0340394943861155!GO:0007162;negative regulation of cell adhesion;0.0340682244338445!GO:0050681;androgen receptor binding;0.0343707387830151!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0347180745374887!GO:0051059;NF-kappaB binding;0.0350477360612481!GO:0030125;clathrin vesicle coat;0.0353775402798064!GO:0030665;clathrin coated vesicle membrane;0.0353775402798064!GO:0045603;positive regulation of endothelial cell differentiation;0.0354365000380962!GO:0006516;glycoprotein catabolic process;0.0359991624768092!GO:0008287;protein serine/threonine phosphatase complex;0.0363902842471624!GO:0002237;response to molecule of bacterial origin;0.0366849524072192!GO:0006383;transcription from RNA polymerase III promoter;0.0371488238107047!GO:0004721;phosphoprotein phosphatase activity;0.0373147550141641!GO:0000303;response to superoxide;0.0373147550141641!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0374547745697849!GO:0033157;regulation of intracellular protein transport;0.037610697877369!GO:0042306;regulation of protein import into nucleus;0.037610697877369!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.037900197578855!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.037900197578855!GO:0030155;regulation of cell adhesion;0.0380053990816344!GO:0043405;regulation of MAP kinase activity;0.0383603435600641!GO:0005832;chaperonin-containing T-complex;0.0387102199091135!GO:0008097;5S rRNA binding;0.0394387663618433!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0397279544710414!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0400279345742136!GO:0006310;DNA recombination;0.0400413206937366!GO:0019902;phosphatase binding;0.040734328371168!GO:0050811;GABA receptor binding;0.0407514499784317!GO:0033033;negative regulation of myeloid cell apoptosis;0.0407514499784317!GO:0001803;regulation of type III hypersensitivity;0.0407514499784317!GO:0032733;positive regulation of interleukin-10 production;0.0407514499784317!GO:0033025;regulation of mast cell apoptosis;0.0407514499784317!GO:0001805;positive regulation of type III hypersensitivity;0.0407514499784317!GO:0033023;mast cell homeostasis;0.0407514499784317!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0407514499784317!GO:0033032;regulation of myeloid cell apoptosis;0.0407514499784317!GO:0001802;type III hypersensitivity;0.0407514499784317!GO:0033028;myeloid cell apoptosis;0.0407514499784317!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0407514499784317!GO:0033026;negative regulation of mast cell apoptosis;0.0407514499784317!GO:0033024;mast cell apoptosis;0.0407514499784317!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0407514499784317!GO:0042101;T cell receptor complex;0.0407514499784317!GO:0006350;transcription;0.0415949354928591!GO:0045926;negative regulation of growth;0.0421168263332595!GO:0030984;kininogen binding;0.0426254798687796!GO:0004213;cathepsin B activity;0.0426254798687796!GO:0005784;translocon complex;0.0427441357050424!GO:0008538;proteasome activator activity;0.0444978132480737!GO:0032984;macromolecular complex disassembly;0.0448691892393526!GO:0008305;integrin complex;0.0449785098489412!GO:0000209;protein polyubiquitination;0.0450486967383465!GO:0019079;viral genome replication;0.0455158152293601!GO:0000738;DNA catabolic process, exonucleolytic;0.0455900866219041!GO:0042289;MHC class II protein binding;0.0460571651960646!GO:0009165;nucleotide biosynthetic process;0.0466386715746306!GO:0015631;tubulin binding;0.0472539879892362!GO:0006405;RNA export from nucleus;0.0472539879892362!GO:0050871;positive regulation of B cell activation;0.0473628303510124!GO:0043022;ribosome binding;0.0475592862971296!GO:0032318;regulation of Ras GTPase activity;0.0480343901620949!GO:0051301;cell division;0.0482904160036525!GO:0050671;positive regulation of lymphocyte proliferation;0.04913202846094!GO:0032946;positive regulation of mononuclear cell proliferation;0.04913202846094!GO:0007259;JAK-STAT cascade;0.0494507156618841!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0496420950316281 | |||
|sample_id=10025 | |sample_id=10025 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=spleen | |sample_tissue=spleen | ||
|top_motifs=POU5F1:2.23351717773;TFAP4:2.05081609735;POU2F1..3:1.85476386081;SPIB:1.8449402307;RBPJ:1.83823476104;ETS1,2:1.83270814229;TLX2:1.81346639899;IRF1,2:1.71073098803;NFATC1..3:1.66382115777;ELF1,2,4:1.6602809751;SPI1:1.41528287697;IRF7:1.4056091439;TFCP2:1.38299799762;T:1.35077963279;STAT1,3:1.34612139379;PRDM1:1.26992258685;DMAP1_NCOR{1,2}_SMARC:1.15321593166;IKZF2:1.15200609435;PATZ1:1.13616435803;RUNX1..3:1.08485540856;SPZ1:1.00293827914;FOXO1,3,4:1.00156962571;AR:0.98731747087;FOX{D1,D2}:0.958044134552;STAT2,4,6:0.93258712567;XCPE1{core}:0.917614163877;SREBF1,2:0.916629986346;FOXA2:0.878253642554;SOX5:0.85121539507;MYFfamily:0.835997422572;RXRA_VDR{dimer}:0.786171942469;NANOG{mouse}:0.779672971973;NR5A1,2:0.764326989721;MTF1:0.714665664457;MAZ:0.700682726989;FOXD3:0.692220342887;MAFB:0.688867279625;MTE{core}:0.686921474919;GATA6:0.681990923649;SMAD1..7,9:0.664238782256;GCM1,2:0.659385339749;MZF1:0.657937098589;TGIF1:0.649209216649;FOXP3:0.645565949322;GATA4:0.644054307402;HMX1:0.633487741193;SP1:0.588815891117;SRF:0.586794722228;HAND1,2:0.557122621579;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.554021343842;HBP1_HMGB_SSRP1_UBTF:0.540831563063;PAX6:0.531199631054;MYOD1:0.518207347305;ZNF148:0.504547453325;FOX{I1,J2}:0.494933181777;RREB1:0.415108820084;BREu{core}:0.39190814216;NR1H4:0.381487940804;HNF4A_NR2F1,2:0.35707763675;EP300:0.296443233127;GTF2I:0.281859843647;ALX1:0.276322530884;EBF1:0.262067390416;ZFP161:0.26151257415;FOX{F1,F2,J1}:0.2594401874;ESR1:0.254387631555;MED-1{core}:0.249214375979;EGR1..3:0.23738115451;ATF2:0.227611237088;RXR{A,B,G}:0.198056043895;GTF2A1,2:0.190290217308;ZEB1:0.185955043022;TBP:0.168242359533;TFAP2{A,C}:0.164874672014;LMO2:0.156962621672;HIC1:0.146411417954;HMGA1,2:0.139920992801;NR3C1:0.13960683177;SOX{8,9,10}:0.139585208243;IKZF1:0.118493272116;NFKB1_REL_RELA:0.111712716678;ZNF238:0.0690422176082;GZF1:0.0671320603491;HES1:0.0649379191544;ZNF423:0.0225416439166;NKX6-1,2:0.0078930731922;TFAP2B:-0.000487913669464;PBX1:-0.0181435549882;CEBPA,B_DDIT3:-0.0233954524027;TLX1..3_NFIC{dimer}:-0.0299634043902;NKX3-2:-0.0321675095888;AIRE:-0.0420187679692;ADNP_IRX_SIX_ZHX:-0.0611050185469;PAX5:-0.0638494508638;CUX2:-0.0723460618742;REST:-0.0880578082542;PAX3,7:-0.0978394486975;SNAI1..3:-0.119625896452;NR6A1:-0.131068522303;FOXP1:-0.132636901937;NFIL3:-0.134849060436;FOXN1:-0.159559398106;NKX3-1:-0.163572714325;FOXQ1:-0.16891121889;HIF1A:-0.179669251715;GFI1B:-0.186962512398;HNF1A:-0.199295294742;CRX:-0.209180695698;EN1,2:-0.25824382727;POU1F1:-0.258494943989;OCT4_SOX2{dimer}:-0.270764398767;PAX2:-0.277649012238;ZNF143:-0.292230755705;bHLH_family:-0.299038307563;NFY{A,B,C}:-0.304296476492;SOX2:-0.309669148402;MEF2{A,B,C,D}:-0.311130738812;KLF4:-0.316377837977;E2F1..5:-0.320504401101;CDX1,2,4:-0.322050012681;MYBL2:-0.324018976863;LEF1_TCF7_TCF7L1,2:-0.342994359725;TOPORS:-0.347968231775;NANOG:-0.351965324415;TEF:-0.363749039613;PAX1,9:-0.397661128606;TEAD1:-0.405932763451;NKX2-1,4:-0.410787768615;NHLH1,2:-0.418410120916;HSF1,2:-0.421972007351;TAL1_TCF{3,4,12}:-0.430119474735;ALX4:-0.435375461229;RORA:-0.468134672134;HLF:-0.468526045346;CREB1:-0.478795259028;VSX1,2:-0.481931219609;ATF6:-0.48543947905;NRF1:-0.505215013987;NKX2-2,8:-0.508584536265;ATF4:-0.516784886091;POU3F1..4:-0.531287707609;BPTF:-0.54068175365;EVI1:-0.54578305674;MYB:-0.560639708498;JUN:-0.569269895765;NFE2L2:-0.570515832423;DBP:-0.583821461127;GLI1..3:-0.594274411266;GFI1:-0.599049738314;PPARG:-0.60510710547;RFX2..5_RFXANK_RFXAP:-0.60804779634;HOX{A6,A7,B6,B7}:-0.608502513941;XBP1:-0.620903219913;PRRX1,2:-0.633619114286;ZNF384:-0.636743449643;SOX17:-0.641622965056;AHR_ARNT_ARNT2:-0.645495338333;ATF5_CREB3:-0.6472595173;PDX1:-0.664260935361;POU6F1:-0.68246913778;LHX3,4:-0.690744635561;NFE2:-0.705779943346;TFDP1:-0.714267270286;ELK1,4_GABP{A,B1}:-0.720395149159;TBX4,5:-0.747112443419;FOSL2:-0.757791205039;YY1:-0.777004190932;FOS_FOS{B,L1}_JUN{B,D}:-0.78668462861;ZIC1..3:-0.803018945289;CDC5L:-0.852766154663;FOXM1:-0.857770962712;NKX2-3_NKX2-5:-0.872864951485;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.91919282423;UFEwm:-0.924980358134;BACH2:-0.941392410187;STAT5{A,B}:-0.970100844968;FOXL1:-1.03366097725;PAX8:-1.0574160465;HOXA9_MEIS1:-1.08572242833;PITX1..3:-1.09162706439;HOX{A4,D4}:-1.20576047686;ZBTB6:-1.25698796987;ZBTB16:-1.26765672701;NFE2L1:-1.26911084491;TP53:-1.280275462;RFX1:-1.31179874407;ESRRA:-1.36906286554;HOX{A5,B5}:-1.3723917292;NFIX:-1.39336348888;PAX4:-1.51379388328;ARID5B:-1.70670247799;ONECUT1,2:-2.24148722139 | |top_motifs=POU5F1:2.23351717773;TFAP4:2.05081609735;POU2F1..3:1.85476386081;SPIB:1.8449402307;RBPJ:1.83823476104;ETS1,2:1.83270814229;TLX2:1.81346639899;IRF1,2:1.71073098803;NFATC1..3:1.66382115777;ELF1,2,4:1.6602809751;SPI1:1.41528287697;IRF7:1.4056091439;TFCP2:1.38299799762;T:1.35077963279;STAT1,3:1.34612139379;PRDM1:1.26992258685;DMAP1_NCOR{1,2}_SMARC:1.15321593166;IKZF2:1.15200609435;PATZ1:1.13616435803;RUNX1..3:1.08485540856;SPZ1:1.00293827914;FOXO1,3,4:1.00156962571;AR:0.98731747087;FOX{D1,D2}:0.958044134552;STAT2,4,6:0.93258712567;XCPE1{core}:0.917614163877;SREBF1,2:0.916629986346;FOXA2:0.878253642554;SOX5:0.85121539507;MYFfamily:0.835997422572;RXRA_VDR{dimer}:0.786171942469;NANOG{mouse}:0.779672971973;NR5A1,2:0.764326989721;MTF1:0.714665664457;MAZ:0.700682726989;FOXD3:0.692220342887;MAFB:0.688867279625;MTE{core}:0.686921474919;GATA6:0.681990923649;SMAD1..7,9:0.664238782256;GCM1,2:0.659385339749;MZF1:0.657937098589;TGIF1:0.649209216649;FOXP3:0.645565949322;GATA4:0.644054307402;HMX1:0.633487741193;SP1:0.588815891117;SRF:0.586794722228;HAND1,2:0.557122621579;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.554021343842;HBP1_HMGB_SSRP1_UBTF:0.540831563063;PAX6:0.531199631054;MYOD1:0.518207347305;ZNF148:0.504547453325;FOX{I1,J2}:0.494933181777;RREB1:0.415108820084;BREu{core}:0.39190814216;NR1H4:0.381487940804;HNF4A_NR2F1,2:0.35707763675;EP300:0.296443233127;GTF2I:0.281859843647;ALX1:0.276322530884;EBF1:0.262067390416;ZFP161:0.26151257415;FOX{F1,F2,J1}:0.2594401874;ESR1:0.254387631555;MED-1{core}:0.249214375979;EGR1..3:0.23738115451;ATF2:0.227611237088;RXR{A,B,G}:0.198056043895;GTF2A1,2:0.190290217308;ZEB1:0.185955043022;TBP:0.168242359533;TFAP2{A,C}:0.164874672014;LMO2:0.156962621672;HIC1:0.146411417954;HMGA1,2:0.139920992801;NR3C1:0.13960683177;SOX{8,9,10}:0.139585208243;IKZF1:0.118493272116;NFKB1_REL_RELA:0.111712716678;ZNF238:0.0690422176082;GZF1:0.0671320603491;HES1:0.0649379191544;ZNF423:0.0225416439166;NKX6-1,2:0.0078930731922;TFAP2B:-0.000487913669464;PBX1:-0.0181435549882;CEBPA,B_DDIT3:-0.0233954524027;TLX1..3_NFIC{dimer}:-0.0299634043902;NKX3-2:-0.0321675095888;AIRE:-0.0420187679692;ADNP_IRX_SIX_ZHX:-0.0611050185469;PAX5:-0.0638494508638;CUX2:-0.0723460618742;REST:-0.0880578082542;PAX3,7:-0.0978394486975;SNAI1..3:-0.119625896452;NR6A1:-0.131068522303;FOXP1:-0.132636901937;NFIL3:-0.134849060436;FOXN1:-0.159559398106;NKX3-1:-0.163572714325;FOXQ1:-0.16891121889;HIF1A:-0.179669251715;GFI1B:-0.186962512398;HNF1A:-0.199295294742;CRX:-0.209180695698;EN1,2:-0.25824382727;POU1F1:-0.258494943989;OCT4_SOX2{dimer}:-0.270764398767;PAX2:-0.277649012238;ZNF143:-0.292230755705;bHLH_family:-0.299038307563;NFY{A,B,C}:-0.304296476492;SOX2:-0.309669148402;MEF2{A,B,C,D}:-0.311130738812;KLF4:-0.316377837977;E2F1..5:-0.320504401101;CDX1,2,4:-0.322050012681;MYBL2:-0.324018976863;LEF1_TCF7_TCF7L1,2:-0.342994359725;TOPORS:-0.347968231775;NANOG:-0.351965324415;TEF:-0.363749039613;PAX1,9:-0.397661128606;TEAD1:-0.405932763451;NKX2-1,4:-0.410787768615;NHLH1,2:-0.418410120916;HSF1,2:-0.421972007351;TAL1_TCF{3,4,12}:-0.430119474735;ALX4:-0.435375461229;RORA:-0.468134672134;HLF:-0.468526045346;CREB1:-0.478795259028;VSX1,2:-0.481931219609;ATF6:-0.48543947905;NRF1:-0.505215013987;NKX2-2,8:-0.508584536265;ATF4:-0.516784886091;POU3F1..4:-0.531287707609;BPTF:-0.54068175365;EVI1:-0.54578305674;MYB:-0.560639708498;JUN:-0.569269895765;NFE2L2:-0.570515832423;DBP:-0.583821461127;GLI1..3:-0.594274411266;GFI1:-0.599049738314;PPARG:-0.60510710547;RFX2..5_RFXANK_RFXAP:-0.60804779634;HOX{A6,A7,B6,B7}:-0.608502513941;XBP1:-0.620903219913;PRRX1,2:-0.633619114286;ZNF384:-0.636743449643;SOX17:-0.641622965056;AHR_ARNT_ARNT2:-0.645495338333;ATF5_CREB3:-0.6472595173;PDX1:-0.664260935361;POU6F1:-0.68246913778;LHX3,4:-0.690744635561;NFE2:-0.705779943346;TFDP1:-0.714267270286;ELK1,4_GABP{A,B1}:-0.720395149159;TBX4,5:-0.747112443419;FOSL2:-0.757791205039;YY1:-0.777004190932;FOS_FOS{B,L1}_JUN{B,D}:-0.78668462861;ZIC1..3:-0.803018945289;CDC5L:-0.852766154663;FOXM1:-0.857770962712;NKX2-3_NKX2-5:-0.872864951485;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.91919282423;UFEwm:-0.924980358134;BACH2:-0.941392410187;STAT5{A,B}:-0.970100844968;FOXL1:-1.03366097725;PAX8:-1.0574160465;HOXA9_MEIS1:-1.08572242833;PITX1..3:-1.09162706439;HOX{A4,D4}:-1.20576047686;ZBTB6:-1.25698796987;ZBTB16:-1.26765672701;NFE2L1:-1.26911084491;TP53:-1.280275462;RFX1:-1.31179874407;ESRRA:-1.36906286554;HOX{A5,B5}:-1.3723917292;NFIX:-1.39336348888;PAX4:-1.51379388328;ARID5B:-1.70670247799;ONECUT1,2:-2.24148722139 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10025-101D7;search_select_hide=table117:FF:10025-101D7 | |||
}} | }} | ||
Latest revision as of 12:15, 3 June 2020
| Name: | spleen, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10631 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10631
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10631
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.323 |
| 10 | 10 | 0.226 |
| 100 | 100 | 0.0699 |
| 101 | 101 | 0.974 |
| 102 | 102 | 0.756 |
| 103 | 103 | 0.963 |
| 104 | 104 | 0.634 |
| 105 | 105 | 0.198 |
| 106 | 106 | 0.0948 |
| 107 | 107 | 0.107 |
| 108 | 108 | 0.644 |
| 109 | 109 | 0.735 |
| 11 | 11 | 0.921 |
| 110 | 110 | 0.63 |
| 111 | 111 | 0.891 |
| 112 | 112 | 0.154 |
| 113 | 113 | 0.0692 |
| 114 | 114 | 0.426 |
| 115 | 115 | 0.698 |
| 116 | 116 | 0.131 |
| 117 | 117 | 0.164 |
| 118 | 118 | 0.156 |
| 119 | 119 | 0.993 |
| 12 | 12 | 0.925 |
| 120 | 120 | 0.331 |
| 121 | 121 | 0.0579 |
| 122 | 122 | 0.0957 |
| 123 | 123 | 0.867 |
| 124 | 124 | 0.108 |
| 125 | 125 | 0.782 |
| 126 | 126 | 0.529 |
| 127 | 127 | 0.491 |
| 128 | 128 | 0.55 |
| 129 | 129 | 0.0233 |
| 13 | 13 | 0.0374 |
| 130 | 130 | 0.402 |
| 131 | 131 | 0.884 |
| 132 | 132 | 0.719 |
| 133 | 133 | 0.00161 |
| 134 | 134 | 0.313 |
| 135 | 135 | 0.00398 |
| 136 | 136 | 0.73 |
| 137 | 137 | 0.126 |
| 138 | 138 | 0.147 |
| 139 | 139 | 0.636 |
| 14 | 14 | 0.333 |
| 140 | 140 | 0.612 |
| 141 | 141 | 0.828 |
| 142 | 142 | 0.424 |
| 143 | 143 | 0.0664 |
| 144 | 144 | 0.749 |
| 145 | 145 | 0.297 |
| 146 | 146 | 0.477 |
| 147 | 147 | 0.213 |
| 148 | 148 | 0.361 |
| 149 | 149 | 0.342 |
| 15 | 15 | 0.639 |
| 150 | 150 | 0.916 |
| 151 | 151 | 0.948 |
| 152 | 152 | 0.166 |
| 153 | 153 | 0.532 |
| 154 | 154 | 0.366 |
| 155 | 155 | 0.355 |
| 156 | 156 | 0.779 |
| 157 | 157 | 0.228 |
| 158 | 158 | 0.824 |
| 159 | 159 | 0.358 |
| 16 | 16 | 0.641 |
| 160 | 160 | 0.447 |
| 161 | 161 | 0.82 |
| 162 | 162 | 0.491 |
| 163 | 163 | 0.418 |
| 164 | 164 | 0.0199 |
| 165 | 165 | 0.852 |
| 166 | 166 | 0.653 |
| 167 | 167 | 0.0218 |
| 168 | 168 | 5.53779e-4 |
| 169 | 169 | 0.274 |
| 17 | 17 | 0.957 |
| 18 | 18 | 0.494 |
| 19 | 19 | 0.202 |
| 2 | 2 | 0.0229 |
| 20 | 20 | 0.0573 |
| 21 | 21 | 0.569 |
| 22 | 22 | 0.328 |
| 23 | 23 | 0.347 |
| 24 | 24 | 0.373 |
| 25 | 25 | 0.79 |
| 26 | 26 | 0.615 |
| 27 | 27 | 0.0193 |
| 28 | 28 | 0.855 |
| 29 | 29 | 0.205 |
| 3 | 3 | 0.901 |
| 30 | 30 | 0.14 |
| 31 | 31 | 0.509 |
| 32 | 32 | 0.43 |
| 33 | 33 | 0.807 |
| 34 | 34 | 0.0366 |
| 35 | 35 | 0.797 |
| 36 | 36 | 0.756 |
| 37 | 37 | 0.58 |
| 38 | 38 | 0.592 |
| 39 | 39 | 0.742 |
| 4 | 4 | 0.146 |
| 40 | 40 | 0.559 |
| 41 | 41 | 0.767 |
| 42 | 42 | 0.748 |
| 43 | 43 | 0.639 |
| 44 | 44 | 0.531 |
| 45 | 45 | 0.0678 |
| 46 | 46 | 0.788 |
| 47 | 47 | 0.547 |
| 48 | 48 | 0.768 |
| 49 | 49 | 0.933 |
| 5 | 5 | 0.9 |
| 50 | 50 | 0.26 |
| 51 | 51 | 0.536 |
| 52 | 52 | 0.414 |
| 53 | 53 | 0.268 |
| 54 | 54 | 0.524 |
| 55 | 55 | 0.299 |
| 56 | 56 | 0.913 |
| 57 | 57 | 0.0592 |
| 58 | 58 | 0.23 |
| 59 | 59 | 0.0655 |
| 6 | 6 | 0.416 |
| 60 | 60 | 0.416 |
| 61 | 61 | 0.525 |
| 62 | 62 | 0.511 |
| 63 | 63 | 0.838 |
| 64 | 64 | 0.515 |
| 65 | 65 | 0.514 |
| 66 | 66 | 0.119 |
| 67 | 67 | 0.75 |
| 68 | 68 | 0.923 |
| 69 | 69 | 0.219 |
| 7 | 7 | 0.936 |
| 70 | 70 | 0.0531 |
| 71 | 71 | 0.427 |
| 72 | 72 | 0.0166 |
| 73 | 73 | 0.773 |
| 74 | 74 | 0.602 |
| 75 | 75 | 0.233 |
| 76 | 76 | 0.257 |
| 77 | 77 | 0.253 |
| 78 | 78 | 0.928 |
| 79 | 79 | 0.782 |
| 8 | 8 | 0.971 |
| 80 | 80 | 9.55431e-6 |
| 81 | 81 | 0.586 |
| 82 | 82 | 0.416 |
| 83 | 83 | 0.117 |
| 84 | 84 | 0.302 |
| 85 | 85 | 0.407 |
| 86 | 86 | 0.263 |
| 87 | 87 | 0.667 |
| 88 | 88 | 0.351 |
| 89 | 89 | 0.864 |
| 9 | 9 | 0.0495 |
| 90 | 90 | 0.909 |
| 91 | 91 | 0.614 |
| 92 | 92 | 0.409 |
| 93 | 93 | 0.362 |
| 94 | 94 | 0.94 |
| 95 | 95 | 0.517 |
| 96 | 96 | 0.783 |
| 97 | 97 | 0.802 |
| 98 | 98 | 0.305 |
| 99 | 99 | 0.986 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10631
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010025 human spleen - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002106 (spleen)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0004177 (hemopoietic organ)
0005057 (immune organ)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002390 (hematopoietic system)
0002417 (abdominal segment of trunk)
0002193 (hemolymphoid system)
0000916 (abdomen)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010025 (human spleen - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0010316 (germ layer / neural crest)
