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(Created page with "{{f5samples |id=FF:14317-155D6 |name=Small Airway Epithelial Cells, donor3 (nuclear fraction) |sample_id=14317 |rna_tube_id=155D6 |rna_box=155 |rna_position=D6 |sample_...")
 
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{{f5samples
{{f5samples
|id=FF:14317-155D6
|DRA_sample_Accession=CAGE@SAMD00005485
|name=Small Airway Epithelial Cells, donor3 (nuclear fraction)
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005485!sRNA-Seq@SAMD00005485
|sample_id=14317
|accession_numbers=CAGE;DRX008042;DRR008914;DRZ000339;DRZ001724;DRZ011689;DRZ013074
|rna_tube_id=155D6
|accession_numbers_RNASeq=RNA-Seq;DRX057107;DRR062866;DRZ007942!sRNA-Seq;DRX036986;DRR041352;DRZ006994
|rna_box=155
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004
|rna_position=D6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368
|sample_cell_lot=lot:8F3145
|sample_cell_catalog=CC-2547
|sample_company=Lonza
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=50 years old adult
|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=50
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=1.90000
|rna_od260/280=2.04000
|sample_cell_type=pneumocyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=nuclear RNA
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=6.60663
|rna_concentration=0.24469
|sample_note=
|profile_hcage=CNhs12583,,,MAPPING
|profile_cagescan=,,,
|profile_srnaseq=SRhi10014,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000220,CL:0000223,CL:0000255,CL:0000548,CL:0002076,CL:0002321,CL:0002368,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000065,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0001004,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004119,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000408,FF:0000350,FF:0000166,FF:0000406,FF:0000673
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12583.14317-155D6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12583.14317-155D6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12583.14317-155D6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12583.14317-155D6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12583.14317-155D6.hg38.nobarcode.ctss.bed.gz
|id=FF:14317-155D6
|is_a=EFO:0002091;;FF:0000673
|is_obsolete=
|library_id=CNhs12583
|library_id_phase_based=2:CNhs12583
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14317
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GATCAG.14317
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14317
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GATCAG.14317
|name=Small Airway Epithelial Cells, donor3 (nuclear fraction)
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12583,LSID912,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10014,,,
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|rna_box=155
|rna_catalog_number=N/A
|rna_concentration=0.24469
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.9
|rna_od260/280=2.04
|rna_position=D6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=155D6
|rna_weight_ug=6.60663
|rnaseq_library_id=RDhi10013!SRhi10014.GATCAG
|sample_age=50
|sample_category=fractionations and perturbations
|sample_cell_catalog=CC-2547
|sample_cell_line=
|sample_cell_lot=lot:8F3145
|sample_cell_type=pneumocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Lonza
|sample_description=
|sample_dev_stage=50 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=nuclear RNA
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.02925869437703e-234!GO:0043226;organelle;2.68567376514117e-181!GO:0043229;intracellular organelle;8.20131857380212e-181!GO:0043231;intracellular membrane-bound organelle;3.57639153188695e-163!GO:0043227;membrane-bound organelle;5.91741296831442e-163!GO:0005737;cytoplasm;3.30672763790496e-161!GO:0044422;organelle part;2.09607766297233e-119!GO:0044446;intracellular organelle part;3.93835994674322e-118!GO:0044238;primary metabolic process;7.14684636997626e-91!GO:0043170;macromolecule metabolic process;9.42639726436699e-90!GO:0044444;cytoplasmic part;2.29686747766167e-87!GO:0044237;cellular metabolic process;3.13559155757012e-86!GO:0005634;nucleus;5.22920688654229e-84!GO:0005515;protein binding;5.19833377681218e-75!GO:0032991;macromolecular complex;2.02736819472919e-69!GO:0044428;nuclear part;6.06214782160428e-68!GO:0003723;RNA binding;5.01084213801969e-64!GO:0043233;organelle lumen;7.69193595453113e-62!GO:0031974;membrane-enclosed lumen;7.69193595453113e-62!GO:0043283;biopolymer metabolic process;6.65925187312898e-61!GO:0030529;ribonucleoprotein complex;4.75460345835295e-56!GO:0019538;protein metabolic process;8.2566608202496e-55!GO:0016043;cellular component organization and biogenesis;2.81273938490264e-52!GO:0033036;macromolecule localization;2.46139654474857e-48!GO:0044267;cellular protein metabolic process;3.49496379872923e-47!GO:0015031;protein transport;5.13400171880005e-47!GO:0044260;cellular macromolecule metabolic process;1.65001171754737e-46!GO:0006396;RNA processing;1.89201808580046e-45!GO:0031981;nuclear lumen;3.79598866238093e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.63903555757933e-44!GO:0008104;protein localization;2.21147846457801e-43!GO:0010467;gene expression;1.05148472816573e-42!GO:0045184;establishment of protein localization;1.24369511721173e-42!GO:0046907;intracellular transport;6.42802709838351e-41!GO:0043228;non-membrane-bound organelle;1.80940052849462e-38!GO:0043232;intracellular non-membrane-bound organelle;1.80940052849462e-38!GO:0031090;organelle membrane;3.08764319349982e-37!GO:0043234;protein complex;1.25374428010185e-36!GO:0006412;translation;1.28720520332917e-36!GO:0000166;nucleotide binding;6.4824595308704e-36!GO:0006996;organelle organization and biogenesis;6.21969286138185e-35!GO:0016071;mRNA metabolic process;8.2875724439873e-35!GO:0006886;intracellular protein transport;1.34042802018073e-34!GO:0065003;macromolecular complex assembly;1.09937398067422e-32!GO:0005739;mitochondrion;9.50735788088058e-32!GO:0005840;ribosome;3.87772566034111e-30!GO:0005829;cytosol;1.55998981024205e-29!GO:0006259;DNA metabolic process;1.60348349784202e-29!GO:0008380;RNA splicing;2.59082942483371e-29!GO:0009058;biosynthetic process;7.08559007223971e-29!GO:0006397;mRNA processing;1.05507023032639e-28!GO:0022607;cellular component assembly;1.33078636181157e-28!GO:0003676;nucleic acid binding;8.38099238184108e-28!GO:0005654;nucleoplasm;2.09765511078883e-27!GO:0051649;establishment of cellular localization;2.63736120665263e-27!GO:0009059;macromolecule biosynthetic process;2.88851554254073e-27!GO:0051641;cellular localization;3.39040294445802e-27!GO:0032553;ribonucleotide binding;1.83687877141897e-26!GO:0032555;purine ribonucleotide binding;1.83687877141897e-26!GO:0044249;cellular biosynthetic process;3.09766470021611e-26!GO:0017076;purine nucleotide binding;3.17446282657618e-26!GO:0003735;structural constituent of ribosome;7.05170026825283e-26!GO:0005524;ATP binding;1.0871894809869e-25!GO:0032559;adenyl ribonucleotide binding;3.33059670835436e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.84322688036609e-25!GO:0031967;organelle envelope;6.71685295035759e-25!GO:0030554;adenyl nucleotide binding;1.08067790167512e-24!GO:0007049;cell cycle;1.09070392616093e-24!GO:0031975;envelope;1.37123148148675e-24!GO:0033279;ribosomal subunit;1.81104413277772e-24!GO:0016874;ligase activity;3.53885573323435e-24!GO:0016070;RNA metabolic process;4.56857754190097e-24!GO:0043412;biopolymer modification;1.01195203106656e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.22950425457975e-22!GO:0006512;ubiquitin cycle;3.38790594190303e-22!GO:0044451;nucleoplasm part;2.50780696537729e-21!GO:0006464;protein modification process;5.08407048981036e-21!GO:0044429;mitochondrial part;1.28564505041445e-20!GO:0016462;pyrophosphatase activity;1.53067427028062e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.39473920241856e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.00012217354137e-20!GO:0017111;nucleoside-triphosphatase activity;3.64480965959297e-20!GO:0043687;post-translational protein modification;3.64480965959297e-20!GO:0005681;spliceosome;4.80694303042328e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;9.44589832613761e-20!GO:0006511;ubiquitin-dependent protein catabolic process;1.07072465845383e-19!GO:0006974;response to DNA damage stimulus;1.08462384545853e-19!GO:0012505;endomembrane system;1.45886171399747e-19!GO:0019941;modification-dependent protein catabolic process;1.90383634785581e-19!GO:0043632;modification-dependent macromolecule catabolic process;1.90383634785581e-19!GO:0044257;cellular protein catabolic process;2.3433907316661e-19!GO:0044445;cytosolic part;9.02275857740572e-19!GO:0044265;cellular macromolecule catabolic process;1.06871277138039e-18!GO:0005730;nucleolus;2.99062659091533e-18!GO:0043285;biopolymer catabolic process;4.38395482982339e-18!GO:0006605;protein targeting;6.5304004163493e-18!GO:0022402;cell cycle process;8.46393782149606e-18!GO:0030163;protein catabolic process;1.00325210946646e-16!GO:0004386;helicase activity;1.2703504604346e-16!GO:0006281;DNA repair;1.72901672254196e-16!GO:0005794;Golgi apparatus;1.8356949665725e-16!GO:0009057;macromolecule catabolic process;6.28916364935104e-16!GO:0048770;pigment granule;1.12177340397377e-15!GO:0042470;melanosome;1.12177340397377e-15!GO:0050794;regulation of cellular process;2.05761726266295e-15!GO:0008134;transcription factor binding;3.49208027201073e-15!GO:0022618;protein-RNA complex assembly;4.59606850455816e-15!GO:0006913;nucleocytoplasmic transport;8.28250347609899e-15!GO:0006461;protein complex assembly;9.2545052262366e-15!GO:0051169;nuclear transport;1.56171862384776e-14!GO:0048193;Golgi vesicle transport;1.7148676939431e-14!GO:0000278;mitotic cell cycle;2.47294073178306e-14!GO:0009719;response to endogenous stimulus;2.78842915655522e-14!GO:0006457;protein folding;3.14253869900955e-14!GO:0016192;vesicle-mediated transport;6.5454183753942e-14!GO:0008135;translation factor activity, nucleic acid binding;6.88434317072892e-14!GO:0016604;nuclear body;1.30561595710491e-13!GO:0005635;nuclear envelope;1.56358009780615e-13!GO:0015935;small ribosomal subunit;2.22890920145432e-13!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.54338423585939e-13!GO:0051276;chromosome organization and biogenesis;3.59298003947547e-13!GO:0031965;nuclear membrane;3.883414087659e-13!GO:0051726;regulation of cell cycle;5.70744261881036e-13!GO:0000074;regulation of progression through cell cycle;6.03557769301764e-13!GO:0005783;endoplasmic reticulum;6.77200344815633e-13!GO:0005740;mitochondrial envelope;8.68212843631729e-13!GO:0008026;ATP-dependent helicase activity;8.9378712466335e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.32597242875885e-12!GO:0016607;nuclear speck;1.77652050599592e-12!GO:0031966;mitochondrial membrane;1.83536545699574e-12!GO:0004842;ubiquitin-protein ligase activity;2.1300651826552e-12!GO:0008639;small protein conjugating enzyme activity;2.7000976102782e-12!GO:0044248;cellular catabolic process;2.71295235249184e-12!GO:0016887;ATPase activity;2.97408469408394e-12!GO:0003743;translation initiation factor activity;4.62390140405385e-12!GO:0012501;programmed cell death;5.36299796101762e-12!GO:0044432;endoplasmic reticulum part;6.62009375044997e-12!GO:0044453;nuclear membrane part;8.89275039195391e-12!GO:0006915;apoptosis;9.22018354915631e-12!GO:0042623;ATPase activity, coupled;1.00930588965619e-11!GO:0008565;protein transporter activity;1.449919961293e-11!GO:0019787;small conjugating protein ligase activity;1.52023695328057e-11!GO:0015934;large ribosomal subunit;1.54800292552063e-11!GO:0019866;organelle inner membrane;1.65921092073673e-11!GO:0006260;DNA replication;2.39568520650339e-11!GO:0016740;transferase activity;4.15644874861009e-11!GO:0006403;RNA localization;4.57009098539888e-11!GO:0006399;tRNA metabolic process;5.28926069667049e-11!GO:0016881;acid-amino acid ligase activity;6.89618607447861e-11!GO:0031980;mitochondrial lumen;8.49414739496469e-11!GO:0005759;mitochondrial matrix;8.49414739496469e-11!GO:0008219;cell death;8.56976379501249e-11!GO:0016265;death;8.56976379501249e-11!GO:0050657;nucleic acid transport;9.45840817504533e-11!GO:0051236;establishment of RNA localization;9.45840817504533e-11!GO:0050658;RNA transport;9.45840817504533e-11!GO:0005643;nuclear pore;1.06600368416481e-10!GO:0000087;M phase of mitotic cell cycle;1.26148696331027e-10!GO:0042254;ribosome biogenesis and assembly;1.27083409045078e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.64731840459852e-10!GO:0005694;chromosome;1.86256953768252e-10!GO:0015630;microtubule cytoskeleton;1.86256953768252e-10!GO:0050789;regulation of biological process;1.86256953768252e-10!GO:0007067;mitosis;2.51420021806088e-10!GO:0006413;translational initiation;2.9639627556526e-10!GO:0048523;negative regulation of cellular process;3.12716764663179e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.24739157346076e-10!GO:0006119;oxidative phosphorylation;3.60822552088086e-10!GO:0000502;proteasome complex (sensu Eukaryota);3.98169740358473e-10!GO:0005743;mitochondrial inner membrane;4.31715732121763e-10!GO:0006323;DNA packaging;6.02395553626883e-10!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.23349274871371e-10!GO:0051082;unfolded protein binding;6.79044501914913e-10!GO:0051301;cell division;7.23259860614935e-10!GO:0017038;protein import;7.39841475648449e-10!GO:0006793;phosphorus metabolic process;7.7056349070938e-10!GO:0006796;phosphate metabolic process;7.7056349070938e-10!GO:0022403;cell cycle phase;9.05102869814326e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;9.05102869814326e-10!GO:0000375;RNA splicing, via transesterification reactions;9.05102869814326e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.05102869814326e-10!GO:0003712;transcription cofactor activity;2.58382634387816e-09!GO:0006446;regulation of translational initiation;2.78057406494187e-09!GO:0048475;coated membrane;3.69670363852524e-09!GO:0030117;membrane coat;3.69670363852524e-09!GO:0051028;mRNA transport;3.99330060852503e-09!GO:0006366;transcription from RNA polymerase II promoter;4.24548068368751e-09!GO:0005813;centrosome;5.41807888334282e-09!GO:0043623;cellular protein complex assembly;6.78899268613144e-09!GO:0051170;nuclear import;7.21675887813632e-09!GO:0051186;cofactor metabolic process;8.87156601791899e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.37233909886397e-09!GO:0048519;negative regulation of biological process;1.08378566732568e-08!GO:0005793;ER-Golgi intermediate compartment;1.22688673227701e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.51815838800166e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.51815838800166e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.51815838800166e-08!GO:0006606;protein import into nucleus;1.54465169654842e-08!GO:0005789;endoplasmic reticulum membrane;1.64981520553476e-08!GO:0043038;amino acid activation;1.64981520553476e-08!GO:0006418;tRNA aminoacylation for protein translation;1.64981520553476e-08!GO:0043039;tRNA aminoacylation;1.64981520553476e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.73769179028965e-08!GO:0044427;chromosomal part;1.91140403023718e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.91140403023718e-08!GO:0005768;endosome;1.95063940062168e-08!GO:0005815;microtubule organizing center;2.26882012927353e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.48528166164643e-08!GO:0004674;protein serine/threonine kinase activity;2.48528166164643e-08!GO:0046930;pore complex;2.48528166164643e-08!GO:0006732;coenzyme metabolic process;2.6831035986351e-08!GO:0032446;protein modification by small protein conjugation;3.15776901838131e-08!GO:0000279;M phase;3.88443213955698e-08!GO:0016567;protein ubiquitination;3.92332598797469e-08!GO:0016568;chromatin modification;3.97596864958118e-08!GO:0016310;phosphorylation;4.31209768091928e-08!GO:0044455;mitochondrial membrane part;4.31928809216319e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.32269926798147e-08!GO:0043067;regulation of programmed cell death;5.55299554387089e-08!GO:0030120;vesicle coat;5.57408761281519e-08!GO:0030662;coated vesicle membrane;5.57408761281519e-08!GO:0042981;regulation of apoptosis;6.08683837277616e-08!GO:0019899;enzyme binding;7.65288257049037e-08!GO:0065002;intracellular protein transport across a membrane;1.00558312005022e-07!GO:0044431;Golgi apparatus part;1.34317458802679e-07!GO:0009056;catabolic process;1.69573798900909e-07!GO:0019222;regulation of metabolic process;2.01893182630871e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.0361545913644e-07!GO:0051246;regulation of protein metabolic process;2.94538246400464e-07!GO:0007010;cytoskeleton organization and biogenesis;3.69557090410017e-07!GO:0007243;protein kinase cascade;5.6685943697103e-07!GO:0043566;structure-specific DNA binding;5.73455131997948e-07!GO:0045786;negative regulation of progression through cell cycle;6.77959673374649e-07!GO:0016787;hydrolase activity;7.1620715718951e-07!GO:0003724;RNA helicase activity;7.23642328832654e-07!GO:0051188;cofactor biosynthetic process;8.77901675196966e-07!GO:0005819;spindle;8.94568616811391e-07!GO:0006163;purine nucleotide metabolic process;1.44006580195083e-06!GO:0031324;negative regulation of cellular metabolic process;1.56981845710221e-06!GO:0009259;ribonucleotide metabolic process;1.56981845710221e-06!GO:0006364;rRNA processing;1.69776324552957e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.04996607527519e-06!GO:0008092;cytoskeletal protein binding;2.23961011364817e-06!GO:0016564;transcription repressor activity;2.2482017206616e-06!GO:0016072;rRNA metabolic process;2.59812816136242e-06!GO:0006164;purine nucleotide biosynthetic process;2.62619257486117e-06!GO:0065007;biological regulation;2.68850519853025e-06!GO:0031252;leading edge;2.74536948735527e-06!GO:0005856;cytoskeleton;3.10140339472073e-06!GO:0030036;actin cytoskeleton organization and biogenesis;3.63837999679212e-06!GO:0009892;negative regulation of metabolic process;3.98621107443679e-06!GO:0000139;Golgi membrane;4.12138188274647e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.5667150449113e-06!GO:0000151;ubiquitin ligase complex;4.5667150449113e-06!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.72407659802019e-06!GO:0044440;endosomal part;5.84950846770091e-06!GO:0010008;endosome membrane;5.84950846770091e-06!GO:0051168;nuclear export;7.00453113374975e-06!GO:0009150;purine ribonucleotide metabolic process;7.00453113374975e-06!GO:0009108;coenzyme biosynthetic process;7.09547341430982e-06!GO:0048522;positive regulation of cellular process;7.79072086957523e-06!GO:0016779;nucleotidyltransferase activity;7.87315866444169e-06!GO:0009260;ribonucleotide biosynthetic process;7.92205714137395e-06!GO:0005746;mitochondrial respiratory chain;8.26915785945979e-06!GO:0005798;Golgi-associated vesicle;8.57875209320461e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.83522962573207e-06!GO:0007264;small GTPase mediated signal transduction;8.86416758499748e-06!GO:0009060;aerobic respiration;1.15913402877441e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.30452914823528e-05!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.49020352458704e-05!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.52187581725697e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.67070571788365e-05!GO:0016481;negative regulation of transcription;1.99200037271615e-05!GO:0005083;small GTPase regulator activity;2.13246840513958e-05!GO:0043069;negative regulation of programmed cell death;2.15935243009768e-05!GO:0003697;single-stranded DNA binding;2.23882152749833e-05!GO:0000785;chromatin;2.45612106553961e-05!GO:0030118;clathrin coat;2.46652286467097e-05!GO:0005761;mitochondrial ribosome;2.50899243403481e-05!GO:0000313;organellar ribosome;2.50899243403481e-05!GO:0045333;cellular respiration;2.52581934908721e-05!GO:0016301;kinase activity;2.58037589679459e-05!GO:0030029;actin filament-based process;2.65071853346268e-05!GO:0008270;zinc ion binding;2.7732293263245e-05!GO:0005769;early endosome;3.01320398645041e-05!GO:0009141;nucleoside triphosphate metabolic process;3.03887851053814e-05!GO:0003924;GTPase activity;3.14102575685677e-05!GO:0009967;positive regulation of signal transduction;3.17750815721856e-05!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.23379400955087e-05!GO:0031323;regulation of cellular metabolic process;3.26913038433306e-05!GO:0030695;GTPase regulator activity;3.33665775009005e-05!GO:0007265;Ras protein signal transduction;3.36112717580723e-05!GO:0016363;nuclear matrix;3.50889365618454e-05!GO:0008654;phospholipid biosynthetic process;3.99768841336021e-05!GO:0005667;transcription factor complex;3.99992988577256e-05!GO:0065009;regulation of a molecular function;4.2378131856913e-05!GO:0006916;anti-apoptosis;4.5228302840519e-05!GO:0009142;nucleoside triphosphate biosynthetic process;4.54345006705063e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.54345006705063e-05!GO:0043066;negative regulation of apoptosis;4.54861501829254e-05!GO:0008047;enzyme activator activity;4.55070075759121e-05!GO:0008186;RNA-dependent ATPase activity;4.55070075759121e-05!GO:0003690;double-stranded DNA binding;4.82524779204521e-05!GO:0015986;ATP synthesis coupled proton transport;4.98520195573645e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.98520195573645e-05!GO:0050136;NADH dehydrogenase (quinone) activity;5.14506798233489e-05!GO:0003954;NADH dehydrogenase activity;5.14506798233489e-05!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.14506798233489e-05!GO:0009199;ribonucleoside triphosphate metabolic process;5.26368766161564e-05!GO:0016773;phosphotransferase activity, alcohol group as acceptor;5.76564499910663e-05!GO:0000059;protein import into nucleus, docking;5.8421882998266e-05!GO:0051427;hormone receptor binding;6.35094130040194e-05!GO:0005788;endoplasmic reticulum lumen;6.38092678027841e-05!GO:0003714;transcription corepressor activity;6.47047489586913e-05!GO:0006613;cotranslational protein targeting to membrane;6.48633298097037e-05!GO:0009117;nucleotide metabolic process;7.44725398784632e-05!GO:0042802;identical protein binding;7.64316090442784e-05!GO:0006333;chromatin assembly or disassembly;8.34696112362708e-05!GO:0065004;protein-DNA complex assembly;9.10655013664313e-05!GO:0003713;transcription coactivator activity;9.37236263924482e-05!GO:0042775;organelle ATP synthesis coupled electron transport;9.67303073407697e-05!GO:0042773;ATP synthesis coupled electron transport;9.67303073407697e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.82298011090981e-05!GO:0006350;transcription;9.96715761164416e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000100061280562063!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000100061280562063!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000111212923576069!GO:0009144;purine nucleoside triphosphate metabolic process;0.000111212923576069!GO:0035257;nuclear hormone receptor binding;0.000113538463049063!GO:0006261;DNA-dependent DNA replication;0.000123922907615924!GO:0006752;group transfer coenzyme metabolic process;0.000132916018589579!GO:0006402;mRNA catabolic process;0.000135493880601384!GO:0007005;mitochondrion organization and biogenesis;0.000146600512240826!GO:0004004;ATP-dependent RNA helicase activity;0.000147289809646721!GO:0006099;tricarboxylic acid cycle;0.000149073841585403!GO:0046356;acetyl-CoA catabolic process;0.000149073841585403!GO:0005770;late endosome;0.000149581721969539!GO:0000075;cell cycle checkpoint;0.000161680960396474!GO:0051329;interphase of mitotic cell cycle;0.000162216987877082!GO:0019829;cation-transporting ATPase activity;0.000162652579910338!GO:0031988;membrane-bound vesicle;0.000172279356625621!GO:0031982;vesicle;0.000179771362983186!GO:0016023;cytoplasmic membrane-bound vesicle;0.000202791374783515!GO:0016563;transcription activator activity;0.000203088374504443!GO:0005874;microtubule;0.000207432529726743!GO:0030532;small nuclear ribonucleoprotein complex;0.000207897584355389!GO:0030867;rough endoplasmic reticulum membrane;0.000208763952414702!GO:0003678;DNA helicase activity;0.000215337432720744!GO:0030964;NADH dehydrogenase complex (quinone);0.000218665037106176!GO:0045271;respiratory chain complex I;0.000218665037106176!GO:0005747;mitochondrial respiratory chain complex I;0.000218665037106176!GO:0008234;cysteine-type peptidase activity;0.000228832711184266!GO:0005096;GTPase activator activity;0.000244796833138396!GO:0048471;perinuclear region of cytoplasm;0.000247808509737237!GO:0010468;regulation of gene expression;0.000247808509737237!GO:0031410;cytoplasmic vesicle;0.000252599052870405!GO:0030119;AP-type membrane coat adaptor complex;0.000261254307781719!GO:0016853;isomerase activity;0.000261334539881012!GO:0030658;transport vesicle membrane;0.000267126091943208!GO:0045893;positive regulation of transcription, DNA-dependent;0.000281023324574826!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000292527528344219!GO:0030131;clathrin adaptor complex;0.000301740804617117!GO:0046914;transition metal ion binding;0.000311313147748168!GO:0016197;endosome transport;0.00031312547971494!GO:0001726;ruffle;0.000313741409121977!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;0.00034511795755974!GO:0000245;spliceosome assembly;0.000348432027726188!GO:0051325;interphase;0.000366386806338507!GO:0016859;cis-trans isomerase activity;0.000392864930871979!GO:0006612;protein targeting to membrane;0.000395621202945304!GO:0006754;ATP biosynthetic process;0.000421275175389751!GO:0006753;nucleoside phosphate metabolic process;0.000421275175389751!GO:0009966;regulation of signal transduction;0.000439368527122903!GO:0006084;acetyl-CoA metabolic process;0.000440057821834691!GO:0009109;coenzyme catabolic process;0.00047705105737616!GO:0048518;positive regulation of biological process;0.00047705105737616!GO:0006310;DNA recombination;0.000480653818619193!GO:0046034;ATP metabolic process;0.000511202816720586!GO:0006891;intra-Golgi vesicle-mediated transport;0.000515112059131043!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000560358409980982!GO:0008033;tRNA processing;0.000567853874904579!GO:0005905;coated pit;0.000603280387274498!GO:0006950;response to stress;0.000616523294311285!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000621297940301658!GO:0008094;DNA-dependent ATPase activity;0.000629729239871725!GO:0003729;mRNA binding;0.000629729239871725!GO:0005525;GTP binding;0.000664633964601396!GO:0050790;regulation of catalytic activity;0.000687481566766053!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000707285851910243!GO:0009055;electron carrier activity;0.0007469631864858!GO:0004576;oligosaccharyl transferase activity;0.000771727175988314!GO:0016469;proton-transporting two-sector ATPase complex;0.000781492644078364!GO:0045259;proton-transporting ATP synthase complex;0.00078833696361574!GO:0030660;Golgi-associated vesicle membrane;0.00080236474944477!GO:0051252;regulation of RNA metabolic process;0.00082565521165416!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00100079896960742!GO:0043021;ribonucleoprotein binding;0.00100133908490874!GO:0032774;RNA biosynthetic process;0.00104660772515113!GO:0019783;small conjugating protein-specific protease activity;0.0010864503715107!GO:0004843;ubiquitin-specific protease activity;0.00110480681081535!GO:0007242;intracellular signaling cascade;0.00110815261438508!GO:0004672;protein kinase activity;0.00112571007180759!GO:0005885;Arp2/3 protein complex;0.0011731018385881!GO:0006351;transcription, DNA-dependent;0.00117605231734963!GO:0006401;RNA catabolic process;0.00123786855398933!GO:0030132;clathrin coat of coated pit;0.00125341606390961!GO:0008250;oligosaccharyl transferase complex;0.00125341606390961!GO:0006302;double-strand break repair;0.00127985503377781!GO:0051052;regulation of DNA metabolic process;0.00129164013645087!GO:0005048;signal sequence binding;0.00132397754747069!GO:0016044;membrane organization and biogenesis;0.0013297207747688!GO:0051187;cofactor catabolic process;0.00141357233243359!GO:0033116;ER-Golgi intermediate compartment membrane;0.00143110323959624!GO:0003684;damaged DNA binding;0.0014595059363113!GO:0004221;ubiquitin thiolesterase activity;0.00152315373520609!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00152794940905996!GO:0044452;nucleolar part;0.00154398508402266!GO:0031968;organelle outer membrane;0.00163125087451979!GO:0032200;telomere organization and biogenesis;0.00163564340732058!GO:0000723;telomere maintenance;0.00163564340732058!GO:0006405;RNA export from nucleus;0.00164965919501987!GO:0019867;outer membrane;0.00174892693137563!GO:0005791;rough endoplasmic reticulum;0.00179917530970323!GO:0003682;chromatin binding;0.00194358145971556!GO:0008139;nuclear localization sequence binding;0.00197041350027835!GO:0051338;regulation of transferase activity;0.00199979985181177!GO:0015631;tubulin binding;0.00202386377405065!GO:0007050;cell cycle arrest;0.00202886345131628!GO:0030134;ER to Golgi transport vesicle;0.00206268511513324!GO:0005741;mitochondrial outer membrane;0.00208516770944323!GO:0007088;regulation of mitosis;0.00220350980331234!GO:0045892;negative regulation of transcription, DNA-dependent;0.00224895209071323!GO:0016791;phosphoric monoester hydrolase activity;0.00242027453401542!GO:0019843;rRNA binding;0.00259313382265897!GO:0000287;magnesium ion binding;0.00275861928500698!GO:0045941;positive regulation of transcription;0.00277041472495414!GO:0000776;kinetochore;0.00282244408368466!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00299465266197975!GO:0000775;chromosome, pericentric region;0.00305614161644754!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00310028103619447!GO:0030127;COPII vesicle coat;0.00310028103619447!GO:0012507;ER to Golgi transport vesicle membrane;0.00310028103619447!GO:0007017;microtubule-based process;0.00310194366466599!GO:0007266;Rho protein signal transduction;0.00314575535039474!GO:0016126;sterol biosynthetic process;0.00320508031137275!GO:0005839;proteasome core complex (sensu Eukaryota);0.00323498862655915!GO:0000922;spindle pole;0.00325771320925523!GO:0030027;lamellipodium;0.00326148509738172!GO:0007051;spindle organization and biogenesis;0.00326741077202339!GO:0045045;secretory pathway;0.00328699088409366!GO:0000209;protein polyubiquitination;0.0033330606662068!GO:0046578;regulation of Ras protein signal transduction;0.00350251651210075!GO:0030032;lamellipodium biogenesis;0.00350251651210075!GO:0008022;protein C-terminus binding;0.00352185137589529!GO:0015078;hydrogen ion transmembrane transporter activity;0.00352185137589529!GO:0030031;cell projection biogenesis;0.00356031458010405!GO:0005773;vacuole;0.00356810162028981!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00371353255364186!GO:0046467;membrane lipid biosynthetic process;0.00371353255364186!GO:0003899;DNA-directed RNA polymerase activity;0.00380921557242047!GO:0004298;threonine endopeptidase activity;0.00389619152671424!GO:0031625;ubiquitin protein ligase binding;0.00394379049302963!GO:0035258;steroid hormone receptor binding;0.004120077773159!GO:0000049;tRNA binding;0.00440658011768145!GO:0051789;response to protein stimulus;0.00460705718816357!GO:0006986;response to unfolded protein;0.00460705718816357!GO:0006289;nucleotide-excision repair;0.00478080994436071!GO:0030125;clathrin vesicle coat;0.00485377208481726!GO:0030665;clathrin coated vesicle membrane;0.00485377208481726!GO:0030521;androgen receptor signaling pathway;0.00486726108507219!GO:0032561;guanyl ribonucleotide binding;0.00486726108507219!GO:0019001;guanyl nucleotide binding;0.00486726108507219!GO:0007093;mitotic cell cycle checkpoint;0.00493103245379749!GO:0051920;peroxiredoxin activity;0.00497131361321604!GO:0046489;phosphoinositide biosynthetic process;0.0049919174506078!GO:0043549;regulation of kinase activity;0.0051281388207576!GO:0016311;dephosphorylation;0.00524353740077234!GO:0043065;positive regulation of apoptosis;0.0055448092785294!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00558480285834666!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00565271882610505!GO:0004721;phosphoprotein phosphatase activity;0.00565271882610505!GO:0045449;regulation of transcription;0.00576624556761952!GO:0018196;peptidyl-asparagine modification;0.00609066904853613!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00609066904853613!GO:0051128;regulation of cellular component organization and biogenesis;0.0062023760121052!GO:0043068;positive regulation of programmed cell death;0.00644998501928423!GO:0030659;cytoplasmic vesicle membrane;0.00654470792768762!GO:0016790;thiolester hydrolase activity;0.00664649107997279!GO:0006611;protein export from nucleus;0.00670304082602039!GO:0043087;regulation of GTPase activity;0.00678064281914193!GO:0015980;energy derivation by oxidation of organic compounds;0.0069091927511102!GO:0005099;Ras GTPase activator activity;0.0069091927511102!GO:0008610;lipid biosynthetic process;0.00724095081898818!GO:0006607;NLS-bearing substrate import into nucleus;0.00725275488625128!GO:0048500;signal recognition particle;0.00725275488625128!GO:0007004;telomere maintenance via telomerase;0.0073043629872388!GO:0048468;cell development;0.00730723680981791!GO:0000781;chromosome, telomeric region;0.00757388884159157!GO:0030663;COPI coated vesicle membrane;0.0077580719037875!GO:0030126;COPI vesicle coat;0.0077580719037875!GO:0009165;nucleotide biosynthetic process;0.00790106342976819!GO:0006892;post-Golgi vesicle-mediated transport;0.00793811025445463!GO:0045454;cell redox homeostasis;0.00853037065250241!GO:0005938;cell cortex;0.00853037065250241!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0086422825626588!GO:0006695;cholesterol biosynthetic process;0.00868326205535363!GO:0006468;protein amino acid phosphorylation;0.00898022654986148!GO:0004003;ATP-dependent DNA helicase activity;0.009073119283054!GO:0050681;androgen receptor binding;0.00907405273513793!GO:0006352;transcription initiation;0.00910079507419395!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00913583507362184!GO:0005876;spindle microtubule;0.00943906988834809!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00971368356734848!GO:0000323;lytic vacuole;0.00989753902650871!GO:0005764;lysosome;0.00989753902650871!GO:0032984;macromolecular complex disassembly;0.00994316736604571!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00998678210726495!GO:0006334;nucleosome assembly;0.0103257509699873!GO:0031532;actin cytoskeleton reorganization;0.0104005612764966!GO:0030137;COPI-coated vesicle;0.0105473982595506!GO:0050662;coenzyme binding;0.0107740777582308!GO:0046474;glycerophospholipid biosynthetic process;0.0107981946519807!GO:0006383;transcription from RNA polymerase III promoter;0.0109506283303474!GO:0007052;mitotic spindle organization and biogenesis;0.0112672220755318!GO:0051056;regulation of small GTPase mediated signal transduction;0.0113915960534179!GO:0030133;transport vesicle;0.0114773838253626!GO:0006414;translational elongation;0.0116940274626503!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0117067882639937!GO:0003779;actin binding;0.0118342991347811!GO:0006355;regulation of transcription, DNA-dependent;0.0119924007056029!GO:0016251;general RNA polymerase II transcription factor activity;0.0120538652013999!GO:0031072;heat shock protein binding;0.0121002722293712!GO:0008629;induction of apoptosis by intracellular signals;0.0122928759708969!GO:0017166;vinculin binding;0.0123248133909284!GO:0043241;protein complex disassembly;0.0124385663644311!GO:0032318;regulation of Ras GTPase activity;0.0128113155490328!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0129064383112907!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0129185162716479!GO:0045047;protein targeting to ER;0.0129185162716479!GO:0030384;phosphoinositide metabolic process;0.0129185162716479!GO:0044433;cytoplasmic vesicle part;0.0140955943716982!GO:0005637;nuclear inner membrane;0.0142683462758609!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.014351638003387!GO:0006417;regulation of translation;0.0146182948674516!GO:0043550;regulation of lipid kinase activity;0.0146182948674516!GO:0046822;regulation of nucleocytoplasmic transport;0.014836994074161!GO:0043414;biopolymer methylation;0.0149033145749924!GO:0045859;regulation of protein kinase activity;0.0151365020525289!GO:0016584;nucleosome positioning;0.0152321943546019!GO:0032259;methylation;0.0158808067355614!GO:0031901;early endosome membrane;0.0159463160700105!GO:0003711;transcription elongation regulator activity;0.0159463160700105!GO:0008243;plasminogen activator activity;0.01608493692514!GO:0008312;7S RNA binding;0.0161218097735205!GO:0006650;glycerophospholipid metabolic process;0.0161294935709168!GO:0030833;regulation of actin filament polymerization;0.0162050898397073!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0162203442411244!GO:0031497;chromatin assembly;0.0165044282849673!GO:0043488;regulation of mRNA stability;0.0169724160617053!GO:0043487;regulation of RNA stability;0.0169724160617053!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0170532622413591!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0170541786740892!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.017134676837969!GO:0051272;positive regulation of cell motility;0.0171722494371781!GO:0040017;positive regulation of locomotion;0.0171722494371781!GO:0008168;methyltransferase activity;0.017402732275981!GO:0040029;regulation of gene expression, epigenetic;0.017508506388279!GO:0031124;mRNA 3'-end processing;0.0175182061906694!GO:0016741;transferase activity, transferring one-carbon groups;0.0177226822193073!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0181345757648138!GO:0007030;Golgi organization and biogenesis;0.018310774612169!GO:0043624;cellular protein complex disassembly;0.018746350286019!GO:0030518;steroid hormone receptor signaling pathway;0.0198692539973471!GO:0005832;chaperonin-containing T-complex;0.020103947672818!GO:0008017;microtubule binding;0.0201869215595579!GO:0022406;membrane docking;0.0202949111719563!GO:0048278;vesicle docking;0.0202949111719563!GO:0012506;vesicle membrane;0.0208225363828587!GO:0007059;chromosome segregation;0.0208992592556045!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0209883878067551!GO:0048144;fibroblast proliferation;0.0209926988387997!GO:0048145;regulation of fibroblast proliferation;0.0209926988387997!GO:0005657;replication fork;0.0219828838983228!GO:0031123;RNA 3'-end processing;0.0220529782442379!GO:0042770;DNA damage response, signal transduction;0.0221201162269105!GO:0004527;exonuclease activity;0.0223676359367991!GO:0004681;casein kinase I activity;0.0242191770781616!GO:0006497;protein amino acid lipidation;0.0245357603609271!GO:0006904;vesicle docking during exocytosis;0.0246521363043596!GO:0005862;muscle thin filament tropomyosin;0.024948357006782!GO:0031529;ruffle organization and biogenesis;0.0259493377329666!GO:0043022;ribosome binding;0.0259780157670033!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0262068000378116!GO:0000082;G1/S transition of mitotic cell cycle;0.0265440580772901!GO:0006275;regulation of DNA replication;0.0271478582508053!GO:0007034;vacuolar transport;0.0272681850523583!GO:0051336;regulation of hydrolase activity;0.0272817864679728!GO:0004680;casein kinase activity;0.0274114451135493!GO:0006626;protein targeting to mitochondrion;0.0275870503957031!GO:0006839;mitochondrial transport;0.0279744875564701!GO:0048146;positive regulation of fibroblast proliferation;0.0280669875431643!GO:0030176;integral to endoplasmic reticulum membrane;0.028199489065353!GO:0006406;mRNA export from nucleus;0.0282475219840469!GO:0004702;receptor signaling protein serine/threonine kinase activity;0.0282475219840469!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0282475219840469!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0282475219840469!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0282475219840469!GO:0000086;G2/M transition of mitotic cell cycle;0.0282475219840469!GO:0000118;histone deacetylase complex;0.0283812678241436!GO:0006897;endocytosis;0.030781346039556!GO:0010324;membrane invagination;0.030781346039556!GO:0019904;protein domain specific binding;0.0314487340926991!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0315271852538723!GO:0015399;primary active transmembrane transporter activity;0.0315271852538723!GO:0032940;secretion by cell;0.031675038844753!GO:0004518;nuclease activity;0.0326031281369378!GO:0006338;chromatin remodeling;0.0327670919395503!GO:0000339;RNA cap binding;0.0332495492476232!GO:0033130;acetylcholine receptor binding;0.0335120083536373!GO:0007032;endosome organization and biogenesis;0.0342447872561771!GO:0043495;protein anchor;0.0345498099410282!GO:0005149;interleukin-1 receptor binding;0.0345498099410282!GO:0003677;DNA binding;0.0347900216780177!GO:0007006;mitochondrial membrane organization and biogenesis;0.0347900216780177!GO:0051539;4 iron, 4 sulfur cluster binding;0.0350255544553126!GO:0006378;mRNA polyadenylation;0.0372983393644975!GO:0046983;protein dimerization activity;0.0373069048194043!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0374224776589643!GO:0046966;thyroid hormone receptor binding;0.0377579980109537!GO:0008361;regulation of cell size;0.037815204467411!GO:0003746;translation elongation factor activity;0.0388869148478766!GO:0051098;regulation of binding;0.0400793600497284!GO:0001952;regulation of cell-matrix adhesion;0.0402424289709669!GO:0006278;RNA-dependent DNA replication;0.0403729422239772!GO:0031902;late endosome membrane;0.0411958784788192!GO:0031326;regulation of cellular biosynthetic process;0.0418753204367747!GO:0000792;heterochromatin;0.0423986676270308!GO:0000152;nuclear ubiquitin ligase complex;0.0424962697374947!GO:0009116;nucleoside metabolic process;0.0431069251583075!GO:0032508;DNA duplex unwinding;0.0438400003336077!GO:0032392;DNA geometric change;0.0438400003336077!GO:0003756;protein disulfide isomerase activity;0.0438400003336077!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0438400003336077!GO:0030911;TPR domain binding;0.0438400003336077!GO:0008426;protein kinase C inhibitor activity;0.04396444865792!GO:0004659;prenyltransferase activity;0.04396444865792!GO:0006470;protein amino acid dephosphorylation;0.0440189349307792!GO:0005762;mitochondrial large ribosomal subunit;0.0440651199588841!GO:0000315;organellar large ribosomal subunit;0.0440651199588841!GO:0009112;nucleobase metabolic process;0.0443655737179502!GO:0008283;cell proliferation;0.0446338077769633!GO:0007041;lysosomal transport;0.0454073155624483!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.046397374722027!GO:0033673;negative regulation of kinase activity;0.046397374722027!GO:0006469;negative regulation of protein kinase activity;0.046397374722027!GO:0008276;protein methyltransferase activity;0.0467270222098404!GO:0009889;regulation of biosynthetic process;0.0468014415783915!GO:0042158;lipoprotein biosynthetic process;0.0470055524876801!GO:0030433;ER-associated protein catabolic process;0.0470055524876801!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0470055524876801!GO:0004726;non-membrane spanning protein tyrosine phosphatase activity;0.0472627741358986!GO:0006376;mRNA splice site selection;0.0474140765211907!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0474140765211907!GO:0019371;cyclooxygenase pathway;0.0478876905032569!GO:0051348;negative regulation of transferase activity;0.0478876905032569!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0480097642634211!GO:0033559;unsaturated fatty acid metabolic process;0.0484685653825381!GO:0006636;unsaturated fatty acid biosynthetic process;0.0484685653825381!GO:0016788;hydrolase activity, acting on ester bonds;0.0484880298733788!GO:0005684;U2-dependent spliceosome;0.0485326421136165!GO:0042026;protein refolding;0.0485326421136165!GO:0042176;regulation of protein catabolic process;0.0488294065787524!GO:0051059;NF-kappaB binding;0.0488536108331134!GO:0006505;GPI anchor metabolic process;0.048858664321523!GO:0019900;kinase binding;0.0490538921385519!GO:0051540;metal cluster binding;0.0498071735347616!GO:0051536;iron-sulfur cluster binding;0.0498071735347616
|sample_id=14317
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14317-155D6;search_select_hide=table117:FF:14317-155D6
}}
}}

Latest revision as of 19:06, 4 June 2020

Name:Small Airway Epithelial Cells, donor3 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12583
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stage50 years old adult
sexmale
age50
cell typepneumocyte
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005485
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12583 CAGE DRX008042 DRR008914
Accession ID Hg19

Library idBAMCTSS
CNhs12583 DRZ000339 DRZ001724
Accession ID Hg38

Library idBAMCTSS
CNhs12583 DRZ011689 DRZ013074
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005485
sRNA-Seq  SAMD00005485
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10013 RNA-Seq DRX057107 DRR062866
SRhi10014.GATCAG sRNA-Seq DRX036986 DRR041352
Accession ID Hg19

Library idBAMCTSS
RDhi10013 DRZ007942
SRhi10014.GATCAG DRZ006994


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0993
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.36
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0522
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.483
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0987
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0522
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.299
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0489
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0.0522
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.876
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0978
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.332
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0922
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.853
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0987
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.458
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.445
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0522
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0552
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.483
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0522
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0987
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0166
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0987
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.154
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0169
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.141
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.214
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.425
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12583

Jaspar motifP-value
MA0002.23.953e-4
MA0003.10.137
MA0004.10.295
MA0006.10.884
MA0007.10.889
MA0009.10.348
MA0014.10.498
MA0017.10.0283
MA0018.20.0235
MA0019.10.423
MA0024.10.234
MA0025.10.995
MA0027.10.698
MA0028.12.80098e-5
MA0029.10.361
MA0030.10.62
MA0031.10.331
MA0035.20.0182
MA0038.10.576
MA0039.20.0161
MA0040.10.0325
MA0041.10.526
MA0042.10.429
MA0043.10.00654
MA0046.10.419
MA0047.20.0696
MA0048.10.139
MA0050.10.00284
MA0051.10.0215
MA0052.10.129
MA0055.10.0053
MA0057.10.872
MA0058.10.23
MA0059.10.164
MA0060.10.0805
MA0061.10.0326
MA0062.23.0954e-7
MA0065.20.00412
MA0066.10.0215
MA0067.10.623
MA0068.10.187
MA0069.10.221
MA0070.10.187
MA0071.10.065
MA0072.10.371
MA0073.10.928
MA0074.10.12
MA0076.15.69472e-6
MA0077.10.834
MA0078.10.61
MA0079.20.264
MA0080.20.208
MA0081.10.821
MA0083.10.991
MA0084.10.976
MA0087.10.312
MA0088.10.932
MA0090.10.0171
MA0091.10.00142
MA0092.10.072
MA0093.10.309
MA0099.20.00386
MA0100.10.855
MA0101.10.706
MA0102.20.602
MA0103.10.81
MA0104.20.376
MA0105.11.55696e-5
MA0106.12.05124e-7
MA0107.10.297
MA0108.20.313
MA0111.10.863
MA0112.21.38913e-4
MA0113.10.5
MA0114.10.128
MA0115.10.405
MA0116.14.26451e-4
MA0117.10.811
MA0119.10.438
MA0122.10.965
MA0124.10.972
MA0125.10.133
MA0131.10.0364
MA0135.10.493
MA0136.10.0139
MA0137.20.16
MA0138.20.0222
MA0139.10.133
MA0140.10.112
MA0141.10.00675
MA0142.10.896
MA0143.10.337
MA0144.10.848
MA0145.10.898
MA0146.10.597
MA0147.10.501
MA0148.10.136
MA0149.10.281
MA0150.10.695
MA0152.10.611
MA0153.10.621
MA0154.10.00132
MA0155.10.0744
MA0156.14.0112e-4
MA0157.10.323
MA0159.10.0404
MA0160.10.0784
MA0162.10.384
MA0163.14.91501e-5
MA0164.10.881
MA0258.10.00104
MA0259.10.869



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12583

Novel motifP-value
10.137
100.139
1000.994
1010.482
1020.725
1030.159
1040.842
1050.919
1060.011
1070.168
1080.441
1090.502
110.0887
1100.642
1110.681
1120.214
1130.945
1140.103
1150.123
1160.162
1170.977
1180.676
1190.254
120.457
1200.653
1210.57
1220.88
1230.737
1240.0173
1250.31
1260.521
1270.44
1280.0194
1290.515
130.874
1300.244
1310.473
1320.668
1330.00237
1340.258
1350.0552
1360.334
1370.171
1380.817
1390.00693
140.903
1400.321
1410.631
1420.132
1430.00273
1440.186
1450.892
1460.951
1470.878
1480.0118
1490.0176
150.0274
1500.641
1510.513
1520.871
1530.875
1540.968
1550.753
1560.65
1570.536
1580.599
1590.343
160.219
1600.0246
1610.28
1620.904
1630.991
1640.983
1650.665
1660.721
1670.654
1680.526
1690.061
170.231
180.0145
190.0278
20.412
200.24
210.273
220.198
230.252
240.989
250.247
260.689
270.043
280.52
290.684
30.513
300.965
310.414
320.00379
330.985
340.303
350.0322
360.305
370.339
380.662
390.703
40.655
400.374
410.0787
420.643
430.133
440.00394
450.885
460.0505
470.278
480.608
490.0938
50.159
500.634
510.189
520.469
530.463
540.205
550.918
560.508
570.674
580.206
590.0185
60.725
600.145
610.416
620.0309
630.669
640.122
650.135
660.912
670.637
680.67
690.0853
70.507
700.148
710.237
720.376
730.961
740.0138
750.365
760.369
770.147
780.955
790.0148
80.0277
800.152
810.0688
820.0418
830.0575
840.862
850.0334
860.368
870.769
880.444
890.0539
90.136
900.54
910.383
920.0552
930.718
940.0377
950.625
960.209
970.66
980.0969
990.936



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12583


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002368 (respiratory epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000166 (human small airway epithelial cell sample)
0000406 (nuclear fraction sample)
0000673 (human Small Airway Epithelial Cells, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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