FFCP PHASE1:Hg19::chr1:204485503..204485555,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4194|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6974|TSSclassifier=S|UniProt=O15151,B4E122,Q6MZR7,Q2M2Y2,Q59FS6,Q32SL2|association_with_transcript=0bp_to_ENST00000367182,ENST00000463049,ENST00000470797,ENST00000507825,ENST00000543518,NM_001204171,NM_001204172,NM_002393,NR_024171,uc001hay.1,uc001hba.2,uc001hbb.2,uc001hbc.2,uc001hbd.1,uc010pqw.1,uc010pqx.1,uc010pqy.1_5end|coexpression_cluster_id=C1055|description=CAGE_peak_1_at_MDM4_5end|id=chr1:204485503..204485555,+|ontology_enrichment_celltype=CL:0000037!4.15e-32!172;CL:0000566!4.15e-32!172;CL:0000738!9.72e-32!140;CL:0002032!1.38e-28!165;CL:0000837!1.38e-28!165;CL:0000988!1.38e-28!182;CL:0002031!1.29e-24!124;CL:0002087!5.97e-24!119;CL:0000542!1.18e-16!53;CL:0000051!1.18e-16!53;CL:0000838!1.59e-16!52;CL:0000763!7.58e-13!112;CL:0000049!7.58e-13!112;CL:0000766!7.78e-12!76;CL:0002057!1.82e-11!42;CL:0000860!2.86e-11!45;CL:0000557!1.26e-09!71;CL:0000945!1.36e-09!24;CL:0000826!1.36e-09!24;CL:0000839!8.22e-09!70;CL:0000236!9.86e-09!14;CL:0000791!1.03e-08!18;CL:0000789!1.03e-08!18;CL:0002420!1.03e-08!18;CL:0002419!1.03e-08!18;CL:0000790!1.03e-08!18;CL:0002009!3.79e-08!65;CL:0002194!1.64e-07!63;CL:0000576!1.64e-07!63;CL:0000040!1.64e-07!63;CL:0000559!1.64e-07!63;CL:0000084!8.15e-07!25;CL:0000827!8.15e-07!25|ontology_enrichment_celltype_v019=CL:0000542;2.34e-10;53!CL:0000945;1.34e-09;24!CL:0002087;3.98e-09;104!CL:0000236;6.72e-09;13!CL:0000860;8.84e-09;33!CL:0002057;8.84e-09;33!CL:0000791;1.09e-08;18!CL:0000789;1.09e-08;18!CL:0002419;1.09e-08;18!CL:0000576;2.10e-07;48!CL:0000738;7.47e-07;136!CL:0000084;8.77e-07;25|ontology_enrichment_celltype_v019_2=CL:0000037,1.17e-32,168;CL:0000738,1.87e-32,136;CL:0000988,7.66e-30,177;CL:0002032,4.20e-29,161;CL:0000837,4.20e-29,161;CL:0002031,2.98e-25,120;CL:0002087,1.33e-24,115;CL:0000542,1.18e-16,53;CL:0000051,1.18e-16,53;CL:0000838,1.59e-16,52;CL:0000763,3.36e-13,108;CL:0000049,3.36e-13,108;CL:0000766,2.42e-12,72;CL:0000860,1.82e-11,42;CL:0002057,1.82e-11,42;CL:0000557,4.66e-10,67;CL:0000945,1.36e-09,24;CL:0000826,1.36e-09,24;CL:0000473,2.85e-09,48;CL:0000234,2.85e-09,48;CL:0000839,3.31e-09,66;CL:0000236,9.86e-09,14;CL:0000791,1.03e-08,18;CL:0000789,1.03e-08,18;CL:0002420,1.03e-08,18;CL:0002419,1.03e-08,18;CL:0000790,1.03e-08,18;CL:0002009,1.54e-08,61;CL:0002194,7.05e-08,59;CL:0000576,7.05e-08,59;CL:0000040,7.05e-08,59;CL:0000559,7.05e-08,59;CL:0000084,8.15e-07,25;CL:0000827,8.15e-07,25|ontology_enrichment_development_v019=CL:0000051;2.34e-10;53!CL:0000790;1.09e-08;18!CL:0002057;1.44e-08;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.88e-21!115;UBERON:0002390!1.69e-12!102;UBERON:0003061!1.69e-12!102;UBERON:0001049!1.34e-11!57;UBERON:0005068!1.34e-11!57;UBERON:0006241!1.34e-11!57;UBERON:0007135!1.34e-11!57;UBERON:0000073!1.94e-10!94;UBERON:0001016!1.94e-10!94;UBERON:0002193!2.49e-10!112;UBERON:0003080!6.77e-10!42;UBERON:0002780!8.88e-10!41;UBERON:0001890!8.88e-10!41;UBERON:0006240!8.88e-10!41;UBERON:0001017!2.43e-09!82;UBERON:0005743!6.36e-09!86;UBERON:0000955!9.67e-09!69;UBERON:0006238!9.67e-09!69;UBERON:0002616!2.82e-08!59;UBERON:0002020!1.86e-07!34;UBERON:0003528!1.86e-07!34;UBERON:0001893!2.32e-07!34;UBERON:0002791!2.36e-07!33;UBERON:0002346!4.44e-07!90;UBERON:0002371!5.01e-07!80;UBERON:0001474!5.23e-07!86|ontology_enrichment_uberon_v019=UBERON:0002780;1.73e-07;41!UBERON:0001890;1.73e-07;41!UBERON:0007023;4.06e-07;114!UBERON:0000073;7.77e-07;53!UBERON:0002616;7.77e-07;53|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.40e-21,114;UBERON:0002390,7.00e-13,98;UBERON:0003061,7.00e-13,98;UBERON:0001049,1.79e-11,56;UBERON:0005068,1.79e-11,56;UBERON:0006241,1.79e-11,56;UBERON:0007135,1.79e-11,56;UBERON:0001016,9.51e-11,89;UBERON:0002193,1.32e-10,108;UBERON:0000073,1.54e-10,53;UBERON:0002616,1.54e-10,53;UBERON:0002780,8.88e-10,41;UBERON:0001890,8.88e-10,41;UBERON:0003080,8.88e-10,41;UBERON:0006240,8.88e-10,41;UBERON:0001017,3.29e-09,81;UBERON:0000955,1.30e-08,68;UBERON:0006238,1.30e-08,68;UBERON:0003528,1.86e-07,34;UBERON:0002020,1.86e-07,34;UBERON:0002346,2.02e-07,86;UBERON:0001893,2.32e-07,34;UBERON:0002371,2.77e-07,76;UBERON:0001474,3.04e-07,82;UBERON:0002405,3.81e-07,93;UBERON:0002791,6.29e-07,32|phase1_expression=8.90224058425727,8.34992043174834,12.8268507727334,5.00366491765652,5.36353313312745,6.10636966870258,12.6649939084155,4.42203911398782,9.66386824339403,5.16041266653169,2.09340350391728,10.9220686065086,9.75937819445278,10.0250745897638,7.62213964174206,3.36162573225888,6.02694528023977,8.76372108464848,4.39139518911456,6.03293184576261,6.73202281106035,13.4785530235578,21.4676990348293,23.8161499626819,29.6280629443735,50.4328477936478,40.886093546073,50.6897431660094,51.5307202672064,77.9173678137342,52.4826658041498,2.75826367343678,3.91567694411725,13.3111443660044,58.0229332346459,48.0532005807485,36.4064544775211,72.0194031091441,106.489101606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07,55.7071930996344,22.1839344881726,18.9804422504183,13.2940908169339,46.5695955511606,86.6658189104904,31.8935172454629,8.05043250238239,22.3808208729723,50.8809504909482,30.7296979271473,33.8853071339077,16.5047069694723,26.4437270758146,14.5660233480395,15.0018437216302,8.14499402630569,6.04955043840887,10.4507955235011,17.9595287343731,45.2329789328858,21.2985027231777,16.4302532704182,13.6293577320617,23.8512400041998,49.6446552428354,45.0913171942573,28.05824141303,9.86741031243341,29.7936881063868,43.5455925126075,39.3527102579836,53.0897643338787,51.7742475572614,25.2110678648455,25.5336503108073,27.2008901684737,35.096585163178,32.7789767136904,40.0004609465961,34.3948470788013,23.9238408591086,41.7329825964714,43.6916348165684,41.8588712853752,55.4645257684261,51.1674360237,165.18827011386,11.748158348438,33.5144549767042,19.9825733481477,17.1744048379665,37.9351273703574,35.650573038263,9.55230738475994,14.2565119006807,10.5413113685497,10.4171652901299,13.5846666946391,8.89811221596536,12.3573636934339,9.6787791208473,7.30554842739068,8.13203324942987,6.5311674537118,13.9438964770717,10.4026181107094,10.7823614038622,6.38020114939188,11.4783913598581,9.16571414883032,10.2817407285575,5.69619026486526,8.00134100491262,9.55953957678147,15.3131140759903,17.5162191027391,12.4008607045578,14.7660153228601,16.1639754607641,26.4988286280167,23.8848589705056,9.00654683774688,27.6653949483124,13.1489436797118,11.113078767544,15.6631490884139,13.0734853989486,17.9104839353364,17.7620080158753,6.36080925405172,7.71656153083659,10.1365464391844,37.9237447510161,24.1801239211839,13.0659781156274,50.8791045038369,28.2547447817113,20.9926447695114,21.0999358590039,43.8997197454193,9.33937053264133,20.4972759657868,14.1991051057,30.7272181519126,27.2099667864089,17.0254786070051,13.4397343683844,19.8628900961611,14.9298542407913,85.0497569169284,86.2598491173454,39.7882832895418,63.9968479805202,38.6990168295178,119.467105097146,55.151415095256,30.1668255705552,13.3561827274436,88.404016146405,44.0313911557008,19.0445009592969,14.3935374356004,30.9584864964935,31.1732467916287,61.1397680188889,32.8186182785208,59.2368486121038,24.6199818772616,33.2639830001613,72.8124043321687,13.8388283086446,19.2290649056817,27.5142897782519,23.91381289312,13.3483733413509,18.6397180036227,35.8049199809294,43.3211491291722,10.2869585038795,53.9244667750834,30.9049899488078,23.2556122864337,28.0926563812386,29.6489996474753,48.4268421140585,40.0972385212297,29.6785991707484,65.0900022731681,24.123341741716,42.17795016309,38.6916737591165,14.0538670403555,65.355623977151,59.8585025549507,53.4129731728236,65.3390489178224,27.2316276399301,31.5741125902835,27.2665935005495,35.4802006139062,28.6769292734022,15.2470054740319,23.3585943973345,32.1036749758602,39.4360130689165,22.1415009017893,59.3553168331172,15.7627141589594,28.187349585336,52.6067365140191,64.6275671986852,17.7849380813232,55.808505409128,11.2239591062235,26.3164528487057,29.0221411059715,17.2814915453523,31.8368245527005,26.2697041621855,30.9324659275742,53.3467683240571,14.6628395868192,12.4082554265728,6.68877257284203,13.8700735429262,22.6727039651211,11.3383670233511,44.0251609287768,28.7455859197492,44.0729483908516,57.3138971809785,16.1418229788853,51.9261523171171,33.7733057808295,37.2722070728568,88.8319375303067,18.8703554458342,25.15877554319,31.2540171520659,23.0455475217146,60.7967837949686,25.9244201811789,59.8740824700583,55.250630460838,39.7296383928396,10.5354811106446,37.6875511099213,68.1964454760447,40.9758739292209,27.14019866806,17.6447435857846,13.8817564372261,43.820183294791,44.4967404902405,70.0930561610597,30.765454627671,24.4769364687293,54.1074856022068,50.257549848963,8.55588541783528,12.4787419730483,11.2482906152185,25.611784241521,12.4562752038613,53.0866719237921,22.13157605401,64.6666120742656,50.5421947441647,35.6004705795173,33.4184059142436,45.8218662567065,58.8710302015733,69.3001072274698,43.7129662897011,53.3264326478778,90.1661181310645,166.732682598674,27.0237788819278,23.8040371960337,49.7208284837219,33.963812671926,23.2718644737991,68.092925597748,25.031049682044,42.9131859944357,20.9206400330204,25.7212903565294,11.5843369372164,14.5516827412671,37.5425507845527,39.6062279152487,39.4689292966266,37.2823793543887,71.0496491376323,24.6837739073489|short_description=p1@MDM4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4194 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6974 | |||
|TSSclassifier=S | |||
|UniProt=O15151,B4E122,Q6MZR7,Q2M2Y2,Q59FS6,Q32SL2 | |||
|association_with_transcript=0bp_to_ENST00000367182,ENST00000463049,ENST00000470797,ENST00000507825,ENST00000543518,NM_001204171,NM_001204172,NM_002393,NR_024171,uc001hay.1,uc001hba.2,uc001hbb.2,uc001hbc.2,uc001hbd.1,uc010pqw.1,uc010pqx.1,uc010pqy.1_5end | |||
|coexpression_cluster_id=C1055 | |||
|description=CAGE_peak_1_at_MDM4_5end | |||
|id=chr1:204485503..204485555,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.15e-32!172;CL:0000566!4.15e-32!172;CL:0000738!9.72e-32!140;CL:0002032!1.38e-28!165;CL:0000837!1.38e-28!165;CL:0000988!1.38e-28!182;CL:0002031!1.29e-24!124;CL:0002087!5.97e-24!119;CL:0000542!1.18e-16!53;CL:0000051!1.18e-16!53;CL:0000838!1.59e-16!52;CL:0000763!7.58e-13!112;CL:0000049!7.58e-13!112;CL:0000766!7.78e-12!76;CL:0002057!1.82e-11!42;CL:0000860!2.86e-11!45;CL:0000557!1.26e-09!71;CL:0000945!1.36e-09!24;CL:0000826!1.36e-09!24;CL:0000839!8.22e-09!70;CL:0000236!9.86e-09!14;CL:0000791!1.03e-08!18;CL:0000789!1.03e-08!18;CL:0002420!1.03e-08!18;CL:0002419!1.03e-08!18;CL:0000790!1.03e-08!18;CL:0002009!3.79e-08!65;CL:0002194!1.64e-07!63;CL:0000576!1.64e-07!63;CL:0000040!1.64e-07!63;CL:0000559!1.64e-07!63;CL:0000084!8.15e-07!25;CL:0000827!8.15e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.34e-10;53!CL:0000945;1.34e-09;24!CL:0002087;3.98e-09;104!CL:0000236;6.72e-09;13!CL:0000860;8.84e-09;33!CL:0002057;8.84e-09;33!CL:0000791;1.09e-08;18!CL:0000789;1.09e-08;18!CL:0002419;1.09e-08;18!CL:0000576;2.10e-07;48!CL:0000738;7.47e-07;136!CL:0000084;8.77e-07;25 | |||
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|ontology_enrichment_development_v019=CL:0000051;2.34e-10;53!CL:0000790;1.09e-08;18!CL:0002057;1.44e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002780;1.73e-07;41!UBERON:0001890;1.73e-07;41!UBERON:0007023;4.06e-07;114!UBERON:0000073;7.77e-07;53!UBERON:0002616;7.77e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.40e-21,114;UBERON:0002390,7.00e-13,98;UBERON:0003061,7.00e-13,98;UBERON:0001049,1.79e-11,56;UBERON:0005068,1.79e-11,56;UBERON:0006241,1.79e-11,56;UBERON:0007135,1.79e-11,56;UBERON:0001016,9.51e-11,89;UBERON:0002193,1.32e-10,108;UBERON:0000073,1.54e-10,53;UBERON:0002616,1.54e-10,53;UBERON:0002780,8.88e-10,41;UBERON:0001890,8.88e-10,41;UBERON:0003080,8.88e-10,41;UBERON:0006240,8.88e-10,41;UBERON:0001017,3.29e-09,81;UBERON:0000955,1.30e-08,68;UBERON:0006238,1.30e-08,68;UBERON:0003528,1.86e-07,34;UBERON:0002020,1.86e-07,34;UBERON:0002346,2.02e-07,86;UBERON:0001893,2.32e-07,34;UBERON:0002371,2.77e-07,76;UBERON:0001474,3.04e-07,82;UBERON:0002405,3.81e-07,93;UBERON:0002791,6.29e-07,32 | |||
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| |||
|short_description=p1@MDM4 | |||
}} |
Revision as of 03:01, 12 September 2013
Short description: | p1@MDM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_MDM4_5end |
Coexpression cluster: | C1055_CD19_thymus_CD4_CD8_Neutrophils_Natural_cerebellum |
Association with transcript: | 0bp_to_ENST00000367182, ENST00000463049, ENST00000470797, ENST00000507825, ENST00000543518, NM_001204171, NM_001204172, NM_002393, NR_024171, uc001hay.1, uc001hba.2, uc001hbb.2, uc001hbc.2, uc001hbd.1, uc010pqw.1, uc010pqx.1, uc010pqy.1_5end |
EntrezGene: | MDM4 |
HGNC: | 6974 |
UniProt: | O15151B4E122Q6MZR7Q2M2Y2Q59FS6Q32SL2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.40e-21 | 114 |
hematopoietic system | 7.00e-13 | 98 |
blood island | 7.00e-13 | 98 |
neural tube | 1.79e-11 | 56 |
neural rod | 1.79e-11 | 56 |
future spinal cord | 1.79e-11 | 56 |
neural keel | 1.79e-11 | 56 |
nervous system | 9.51e-11 | 89 |
hemolymphoid system | 1.32e-10 | 108 |
regional part of nervous system | 1.54e-10 | 53 |
regional part of brain | 1.54e-10 | 53 |
regional part of forebrain | 8.88e-10 | 41 |
forebrain | 8.88e-10 | 41 |
anterior neural tube | 8.88e-10 | 41 |
future forebrain | 8.88e-10 | 41 |
central nervous system | 3.29e-09 | 81 |
brain | 1.30e-08 | 68 |
future brain | 1.30e-08 | 68 |
brain grey matter | 1.86e-07 | 34 |
gray matter | 1.86e-07 | 34 |
neurectoderm | 2.02e-07 | 86 |
telencephalon | 2.32e-07 | 34 |
bone marrow | 2.77e-07 | 76 |
bone element | 3.04e-07 | 82 |
immune system | 3.81e-07 | 93 |
regional part of telencephalon | 6.29e-07 | 32 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.