FFCP PHASE1:Hg19::chr12:39300840..39300844,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:39300840..39300844,-|id=chr12:39300840..39300844,-|ontology_enrichment_celltype=CL:0002194!4.87e-39!63;CL:0000576!4.87e-39!63;CL:0000040!4.87e-39!63;CL:0000559!4.87e-39!63;CL:0000557!4.42e-38!71;CL:0002009!2.63e-37!65;CL:0000839!7.38e-37!70;CL:0000766!7.00e-36!76;CL:0000860!1.02e-29!45;CL:0002057!2.47e-29!42;CL:0000763!1.70e-27!112;CL:0000049!1.70e-27!112;CL:0002087!2.16e-23!119;CL:0000738!8.64e-23!140;CL:0002031!9.94e-22!124;CL:0000037!2.02e-20!172;CL:0000566!2.02e-20!172;CL:0002032!1.50e-19!165;CL:0000837!1.50e-19!165;CL:0000988!7.20e-19!182|ontology_enrichment_celltype_v019=CL:0000860;6.00e-24;33!CL:0002057;6.00e-24;33!CL:0000473;1.06e-18;39!CL:0000234;1.06e-18;39!CL:0000576;2.57e-15;48!CL:0000313;7.01e-13;1!CL:0002032;1.96e-12;1!CL:0000557;1.96e-12;1!CL:0002393;2.51e-08;6!CL:0002397;2.51e-08;6!CL:0000136;3.03e-08;13!CL:0000766;2.34e-07;69!CL:0000159;4.55e-07;2|ontology_enrichment_celltype_v019_2=CL:0000860,2.16e-30,42;CL:0002057,2.16e-30,42;CL:0000473,2.03e-26,48;CL:0000234,2.03e-26,48;CL:0000557,8.76e-22,67;CL:0002194,7.51e-21,59;CL:0000576,7.51e-21,59;CL:0000040,7.51e-21,59;CL:0000559,7.51e-21,59;CL:0002009,3.94e-20,61;CL:0000839,1.61e-18,66;CL:0000766,7.07e-17,72;CL:0000763,5.76e-13,108;CL:0000049,5.76e-13,108;CL:0000313,7.03e-13,1;CL:0002087,4.68e-10,115;CL:0002031,1.41e-09,120;CL:0000738,2.83e-08,136;CL:0002032,3.72e-08,161;CL:0000837,3.72e-08,161;CL:0000037,9.58e-08,168;CL:0000988,2.90e-07,177;CL:0000136,4.07e-07,15;CL:0000159,4.56e-07,2|ontology_enrichment_development_v019=CL:0002057;1.21e-17;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2152;7.01e-13;1|ontology_enrichment_disease_v019_2=DOID:2152,7.03e-13,1|ontology_enrichment_uberon=UBERON:0002390!2.28e-34!102;UBERON:0003061!2.28e-34!102;UBERON:0002193!2.97e-34!112;UBERON:0002371!2.57e-33!80;UBERON:0001474!1.02e-29!86;UBERON:0002405!1.71e-26!115;UBERON:0004765!8.33e-24!101;UBERON:0001434!8.33e-24!101;UBERON:0003081!1.36e-12!216;UBERON:0002204!1.21e-10!167|ontology_enrichment_uberon_v019=UBERON:0004911;7.01e-13;1!UBERON:0004909;4.55e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.76e-19,76;UBERON:0001474,1.49e-17,82;UBERON:0002390,4.54e-17,98;UBERON:0003061,4.54e-17,98;UBERON:0004765,7.28e-16,90;UBERON:0002193,2.45e-15,108;UBERON:0002405,2.64e-15,93;UBERON:0001434,3.97e-14,100;UBERON:0004911,7.03e-13,1;UBERON:0002204,8.41e-08,167;UBERON:0003081,2.61e-07,203;UBERON:0004909,4.56e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458480434487708,0.246301768349837,0.314843125254717,0.393364276848904,0.383829398097213,0,0,0,0,0,0,0,1.10799081706375,1.00272223735071,0.651032612147555,0.447830948479849,0.32389366601898,0.515151135268373,0.436194716338694,0,0.242584061187816,0.232429036905685,0.411167888021826,0.309706370895104,1.7261543539329,0.256160706529101,0.47296445977717,0,1.29096936716765,0,0.752969358170419,0,0.449446968890169,1.53041946185451,0.320929027076094,1.27867425159808,0.329851300186716,0.797854630486527,1.27867425159808,1.7412554317715,0.56738522469114,1.24564449799115,1.25624332628372,0,0.868755378820466,1.81619850790011,0.736555271975129,0.949387162322653,0,0.212604299965044,0.209658645508376,0.673971786878971,0.600707571366025,0.964353520182481,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0,0.261958150995425,0,0,0.324547393654683,0.174129737299267,0.132957960518865,0.715471872916026,0,0.371457501329565,0,0,0,0,0,0,0.208994966536811,0,0,0.33472061276467,0,0.760272105718513,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0.144366447761074,0,0.190254152234598,0,0,0.246217006087397,0.234004265139238,0.594524649154913,0,0,0,0,0,0,0,0,0,0.432359860250884,0.25248486685276,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0.376575203107117,0,0,0,0,0,0,1.13929437434833,0.238231775457789,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0.191505370132367,0,0,0.561594356226918,0.228234679033192,0,0,0,0,0.201799707191048,0,0,0.614481528616916,0.223676107892416,0.333698283423817,0,0,0,0,0,0,0,0.29301635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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:39300840..39300844,- | |||
|id=chr12:39300840..39300844,- | |||
|ontology_enrichment_celltype=CL:0002194!4.87e-39!63;CL:0000576!4.87e-39!63;CL:0000040!4.87e-39!63;CL:0000559!4.87e-39!63;CL:0000557!4.42e-38!71;CL:0002009!2.63e-37!65;CL:0000839!7.38e-37!70;CL:0000766!7.00e-36!76;CL:0000860!1.02e-29!45;CL:0002057!2.47e-29!42;CL:0000763!1.70e-27!112;CL:0000049!1.70e-27!112;CL:0002087!2.16e-23!119;CL:0000738!8.64e-23!140;CL:0002031!9.94e-22!124;CL:0000037!2.02e-20!172;CL:0000566!2.02e-20!172;CL:0002032!1.50e-19!165;CL:0000837!1.50e-19!165;CL:0000988!7.20e-19!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.00e-24;33!CL:0002057;6.00e-24;33!CL:0000473;1.06e-18;39!CL:0000234;1.06e-18;39!CL:0000576;2.57e-15;48!CL:0000313;7.01e-13;1!CL:0002032;1.96e-12;1!CL:0000557;1.96e-12;1!CL:0002393;2.51e-08;6!CL:0002397;2.51e-08;6!CL:0000136;3.03e-08;13!CL:0000766;2.34e-07;69!CL:0000159;4.55e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.16e-30,42;CL:0002057,2.16e-30,42;CL:0000473,2.03e-26,48;CL:0000234,2.03e-26,48;CL:0000557,8.76e-22,67;CL:0002194,7.51e-21,59;CL:0000576,7.51e-21,59;CL:0000040,7.51e-21,59;CL:0000559,7.51e-21,59;CL:0002009,3.94e-20,61;CL:0000839,1.61e-18,66;CL:0000766,7.07e-17,72;CL:0000763,5.76e-13,108;CL:0000049,5.76e-13,108;CL:0000313,7.03e-13,1;CL:0002087,4.68e-10,115;CL:0002031,1.41e-09,120;CL:0000738,2.83e-08,136;CL:0002032,3.72e-08,161;CL:0000837,3.72e-08,161;CL:0000037,9.58e-08,168;CL:0000988,2.90e-07,177;CL:0000136,4.07e-07,15;CL:0000159,4.56e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;1.21e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2152;7.01e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,7.03e-13,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.28e-34!102;UBERON:0003061!2.28e-34!102;UBERON:0002193!2.97e-34!112;UBERON:0002371!2.57e-33!80;UBERON:0001474!1.02e-29!86;UBERON:0002405!1.71e-26!115;UBERON:0004765!8.33e-24!101;UBERON:0001434!8.33e-24!101;UBERON:0003081!1.36e-12!216;UBERON:0002204!1.21e-10!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;7.01e-13;1!UBERON:0004909;4.55e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.76e-19,76;UBERON:0001474,1.49e-17,82;UBERON:0002390,4.54e-17,98;UBERON:0003061,4.54e-17,98;UBERON:0004765,7.28e-16,90;UBERON:0002193,2.45e-15,108;UBERON:0002405,2.64e-15,93;UBERON:0001434,3.97e-14,100;UBERON:0004911,7.03e-13,1;UBERON:0002204,8.41e-08,167;UBERON:0003081,2.61e-07,203;UBERON:0004909,4.56e-07,2 | |||
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|short_description=p@chr12:39300840..39300844,- | |||
}} |
Revision as of 22:32, 10 September 2013
Short description: | p@chr12:39300840..39300844, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:39300840..39300844, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.16e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.16e-30 | 42 |
defensive cell | 2.03e-26 | 48 |
phagocyte | 2.03e-26 | 48 |
granulocyte monocyte progenitor cell | 8.76e-22 | 67 |
monopoietic cell | 7.51e-21 | 59 |
monocyte | 7.51e-21 | 59 |
monoblast | 7.51e-21 | 59 |
promonocyte | 7.51e-21 | 59 |
macrophage dendritic cell progenitor | 3.94e-20 | 61 |
myeloid lineage restricted progenitor cell | 1.61e-18 | 66 |
myeloid leukocyte | 7.07e-17 | 72 |
myeloid cell | 5.76e-13 | 108 |
common myeloid progenitor | 5.76e-13 | 108 |
serous secreting cell | 7.03e-13 | 1 |
nongranular leukocyte | 4.68e-10 | 115 |
hematopoietic lineage restricted progenitor cell | 1.41e-09 | 120 |
leukocyte | 2.83e-08 | 136 |
hematopoietic oligopotent progenitor cell | 3.72e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.72e-08 | 161 |
hematopoietic stem cell | 9.58e-08 | 168 |
hematopoietic cell | 2.90e-07 | 177 |
fat cell | 4.07e-07 | 15 |
seromucus secreting cell | 4.56e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.76e-19 | 76 |
bone element | 1.49e-17 | 82 |
hematopoietic system | 4.54e-17 | 98 |
blood island | 4.54e-17 | 98 |
skeletal element | 7.28e-16 | 90 |
hemolymphoid system | 2.45e-15 | 108 |
immune system | 2.64e-15 | 93 |
skeletal system | 3.97e-14 | 100 |
epithelium of female gonad | 7.03e-13 | 1 |
musculoskeletal system | 8.41e-08 | 167 |
lateral plate mesoderm | 2.61e-07 | 203 |
epithelium of gonad | 4.56e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 7.03e-13 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.