FFCP PHASE1:Hg19::chr17:76354825..76354843,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9021|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=19391|TSSclassifier=N|UniProt=O14543,Q5U0H7,Q6FI39|association_with_transcript=332bp_to_AB006967,AF159854,BT019544,CR536497,CR541694_5end|coexpression_cluster_id=C3691|description=CAGE_peak_8_at_SOCS3_5end|id=chr17:76354825..76354843,-|ontology_enrichment_celltype=CL:0002057!4.77e-24!42;CL:0000860!1.41e-22!45;CL:0000766!1.17e-17!76;CL:0000557!1.76e-16!71;CL:0002009!1.09e-15!65;CL:0000839!4.92e-15!70;CL:0002194!1.08e-14!63;CL:0000576!1.08e-14!63;CL:0000040!1.08e-14!63;CL:0000559!1.08e-14!63;CL:0000738!2.22e-13!140;CL:0002031!2.25e-11!124;CL:0002087!7.46e-11!119;CL:0000763!3.13e-09!112;CL:0000049!3.13e-09!112;CL:0002320!2.87e-08!365;CL:0000988!2.88e-08!182;CL:0000037!3.44e-08!172;CL:0000566!3.44e-08!172;CL:0000048!1.11e-07!430;CL:0002032!1.43e-07!165;CL:0000837!1.43e-07!165;CL:0000723!1.80e-07!436;CL:0000134!2.46e-07!358;CL:0000034!5.38e-07!444|ontology_enrichment_celltype_v019=CL:0000860;2.88e-45;33!CL:0002057;2.88e-45;33!CL:0000473;1.70e-31;39!CL:0000234;1.70e-31;39!CL:0000576;5.02e-20;48!CL:0000766;2.59e-17;69!CL:0000775;1.00e-12;3!CL:0000763;1.42e-09;100!CL:0000097;6.95e-08;5|ontology_enrichment_celltype_v019_2=CL:0000860,1.69e-38,42;CL:0002057,1.69e-38,42;CL:0000766,1.78e-34,72;CL:0000473,5.76e-33,48;CL:0000234,5.76e-33,48;CL:0000839,1.59e-29,66;CL:0000557,5.38e-29,67;CL:0002194,3.14e-25,59;CL:0000576,3.14e-25,59;CL:0000040,3.14e-25,59;CL:0000559,3.14e-25,59;CL:0002009,3.12e-24,61;CL:0000763,1.04e-20,108;CL:0000049,1.04e-20,108;CL:0000738,4.83e-15,136;CL:0002031,1.61e-13,120;CL:0000775,8.13e-13,3;CL:0002032,1.15e-11,161;CL:0000837,1.15e-11,161;CL:0000037,6.64e-11,168;CL:0002087,2.06e-10,115;CL:0000988,5.13e-10,177;CL:0000097,7.54e-08,5;CL:0002028,7.54e-08,5;CL:0002320,8.57e-07,361|ontology_enrichment_development_v019=CL:0002057;3.06e-28;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!3.91e-15!80;UBERON:0002405!4.84e-15!115;UBERON:0001474!2.51e-14!86;UBERON:0002390!1.09e-13!102;UBERON:0003061!1.09e-13!102;UBERON:0002193!1.75e-13!112;UBERON:0004765!6.72e-13!101;UBERON:0001434!6.72e-13!101;UBERON:0002204!4.05e-10!167;UBERON:0002384!7.50e-08!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.54e-25,76;UBERON:0001474,1.38e-22,82;UBERON:0004765,8.43e-22,90;UBERON:0002405,3.39e-19,93;UBERON:0001434,5.47e-19,100;UBERON:0002390,6.59e-18,98;UBERON:0003061,6.59e-18,98;UBERON:0002193,1.09e-15,108;UBERON:0002204,7.68e-12,167;UBERON:0003081,8.93e-08,203;UBERON:0002384,5.61e-07,371|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0.37129905888014,0,0,0.602694528023977,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0,0,0,0.786728553697808,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.868043482863407,0.223915474239924,0,0,0,0.755751887377619,0.970336244751265,1.62700325833979,0.822335776043652,1.23882548358041,2.58923153089935,1.2808035326455,3.31075121844019,3.44745680736619,0,0,1.69418105588344,0.545812300115692,1.79778787556068,6.42776173978895,2.56743221660875,4.47535988059329,5.60747210317417,2.39356389145958,3.40979800426155,2.32167390902867,2.26954089876456,1.86846674698672,2.26123798731069,2.08593167368081,3.47502151528187,3.63239701580021,0.736555271975129,1.26584954976354,0.211255286311942,0.425208599930087,0.209658645508376,0.561643155732475,0.600707571366025,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0.764546456250458,0,0,0.263384084775077,0.196709770113833,0,0.822405995998037,0,0.32592226663359,0,0,0.445641827540694,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0.296573126324121,0.267540828089713,0,0,0,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0.403213486449465,0.267440195783507,0.289648807765598,2.43806866313962,0.670700859703636,0,0.361439152384566,0.50133791063589,1.01392563272577,0,0.486634870302636,0.189069634328136,0,0.263504357079378,0.261958150995425,0,0,0.324547393654683,0,0.132957960518865,0,0,0.371457501329565,0,0,0,0,0.419499436209906,0.275118041940067,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0,0.573673241497627,0.354668382198357,0.560677600142307,0,0,0,0,0,0,0.576175924479999,0,0.312160076830321,0,0,0,0,0,0,0.122834317311768,0,2.37600571456411,0.741800787835671,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0.300091096084402,0.103052529238439,0,0,0,0.0974370051611986,0,0,0.161646056818812,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,1.40241773803446,0,0,1.26755034821831,0.982827216677626,0,0,0,0,0,1.1240175325762,0,0,0,0,0,0,0,0.144366447761074,0.462985512576611,0.380508304469197,0,0,0,0.234004265139238,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,4.14656231081544,5.90891809009542,3.02981840223312,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0.257207374262142,0,0,0.285955987316295,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9021 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=19391 | |||
|TSSclassifier=N | |||
|UniProt=O14543,Q5U0H7,Q6FI39 | |||
|association_with_transcript=332bp_to_AB006967,AF159854,BT019544,CR536497,CR541694_5end | |||
|coexpression_cluster_id=C3691 | |||
|description=CAGE_peak_8_at_SOCS3_5end | |||
|id=chr17:76354825..76354843,- | |||
|ontology_enrichment_celltype=CL:0002057!4.77e-24!42;CL:0000860!1.41e-22!45;CL:0000766!1.17e-17!76;CL:0000557!1.76e-16!71;CL:0002009!1.09e-15!65;CL:0000839!4.92e-15!70;CL:0002194!1.08e-14!63;CL:0000576!1.08e-14!63;CL:0000040!1.08e-14!63;CL:0000559!1.08e-14!63;CL:0000738!2.22e-13!140;CL:0002031!2.25e-11!124;CL:0002087!7.46e-11!119;CL:0000763!3.13e-09!112;CL:0000049!3.13e-09!112;CL:0002320!2.87e-08!365;CL:0000988!2.88e-08!182;CL:0000037!3.44e-08!172;CL:0000566!3.44e-08!172;CL:0000048!1.11e-07!430;CL:0002032!1.43e-07!165;CL:0000837!1.43e-07!165;CL:0000723!1.80e-07!436;CL:0000134!2.46e-07!358;CL:0000034!5.38e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.88e-45;33!CL:0002057;2.88e-45;33!CL:0000473;1.70e-31;39!CL:0000234;1.70e-31;39!CL:0000576;5.02e-20;48!CL:0000766;2.59e-17;69!CL:0000775;1.00e-12;3!CL:0000763;1.42e-09;100!CL:0000097;6.95e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.69e-38,42;CL:0002057,1.69e-38,42;CL:0000766,1.78e-34,72;CL:0000473,5.76e-33,48;CL:0000234,5.76e-33,48;CL:0000839,1.59e-29,66;CL:0000557,5.38e-29,67;CL:0002194,3.14e-25,59;CL:0000576,3.14e-25,59;CL:0000040,3.14e-25,59;CL:0000559,3.14e-25,59;CL:0002009,3.12e-24,61;CL:0000763,1.04e-20,108;CL:0000049,1.04e-20,108;CL:0000738,4.83e-15,136;CL:0002031,1.61e-13,120;CL:0000775,8.13e-13,3;CL:0002032,1.15e-11,161;CL:0000837,1.15e-11,161;CL:0000037,6.64e-11,168;CL:0002087,2.06e-10,115;CL:0000988,5.13e-10,177;CL:0000097,7.54e-08,5;CL:0002028,7.54e-08,5;CL:0002320,8.57e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;3.06e-28;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.91e-15!80;UBERON:0002405!4.84e-15!115;UBERON:0001474!2.51e-14!86;UBERON:0002390!1.09e-13!102;UBERON:0003061!1.09e-13!102;UBERON:0002193!1.75e-13!112;UBERON:0004765!6.72e-13!101;UBERON:0001434!6.72e-13!101;UBERON:0002204!4.05e-10!167;UBERON:0002384!7.50e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.54e-25,76;UBERON:0001474,1.38e-22,82;UBERON:0004765,8.43e-22,90;UBERON:0002405,3.39e-19,93;UBERON:0001434,5.47e-19,100;UBERON:0002390,6.59e-18,98;UBERON:0003061,6.59e-18,98;UBERON:0002193,1.09e-15,108;UBERON:0002204,7.68e-12,167;UBERON:0003081,8.93e-08,203;UBERON:0002384,5.61e-07,371 | |||
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| |||
|short_description=p8@SOCS3 | |||
}} |
Revision as of 16:03, 11 September 2013
Short description: | p8@SOCS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_SOCS3_5end |
Coexpression cluster: | C3691_CD14_Mast_Neutrophils_melanoma_Osteoblast_Renal_CD4 |
Association with transcript: | 332bp_to_AB006967, AF159854, BT019544, CR536497, CR541694_5end |
EntrezGene: | SOCS3 |
HGNC: | 19391 |
UniProt: | O14543Q5U0H7Q6FI39 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.69e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.69e-38 | 42 |
myeloid leukocyte | 1.78e-34 | 72 |
defensive cell | 5.76e-33 | 48 |
phagocyte | 5.76e-33 | 48 |
myeloid lineage restricted progenitor cell | 1.59e-29 | 66 |
granulocyte monocyte progenitor cell | 5.38e-29 | 67 |
monopoietic cell | 3.14e-25 | 59 |
monocyte | 3.14e-25 | 59 |
monoblast | 3.14e-25 | 59 |
promonocyte | 3.14e-25 | 59 |
macrophage dendritic cell progenitor | 3.12e-24 | 61 |
myeloid cell | 1.04e-20 | 108 |
common myeloid progenitor | 1.04e-20 | 108 |
leukocyte | 4.83e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 1.61e-13 | 120 |
neutrophil | 8.13e-13 | 3 |
hematopoietic oligopotent progenitor cell | 1.15e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.15e-11 | 161 |
hematopoietic stem cell | 6.64e-11 | 168 |
nongranular leukocyte | 2.06e-10 | 115 |
hematopoietic cell | 5.13e-10 | 177 |
mast cell | 7.54e-08 | 5 |
basophil mast progenitor cell | 7.54e-08 | 5 |
connective tissue cell | 8.57e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.54e-25 | 76 |
bone element | 1.38e-22 | 82 |
skeletal element | 8.43e-22 | 90 |
immune system | 3.39e-19 | 93 |
skeletal system | 5.47e-19 | 100 |
hematopoietic system | 6.59e-18 | 98 |
blood island | 6.59e-18 | 98 |
hemolymphoid system | 1.09e-15 | 108 |
musculoskeletal system | 7.68e-12 | 167 |
lateral plate mesoderm | 8.93e-08 | 203 |
connective tissue | 5.61e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.