FF:10541-107H1: Difference between revisions

Revision as of 19:18, 9 July 2012

Name:	small cell lung carcinoma cell line:LK-2
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	male
age	74
cell type	unclassifiable
cell line	LK-2
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0769
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.594
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0.127
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0899
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0334
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.165
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.239
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0465
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.264
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.00852
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.469
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0465
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0465
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0.927
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11285

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00211
MA0003.1	MA0003.1	0.268
MA0004.1	MA0004.1	0.395
MA0006.1	MA0006.1	0.475
MA0007.1	MA0007.1	0.363
MA0009.1	MA0009.1	0.354
MA0014.1	MA0014.1	0.91
MA0017.1	MA0017.1	0.0429
MA0018.2	MA0018.2	0.213
MA0019.1	MA0019.1	0.214
MA0024.1	MA0024.1	2.3465e-5
MA0025.1	MA0025.1	0.0258
MA0027.1	MA0027.1	0.993
MA0028.1	MA0028.1	0.00184
MA0029.1	MA0029.1	0.763
MA0030.1	MA0030.1	0.149
MA0031.1	MA0031.1	0.347
MA0035.2	MA0035.2	0.338
MA0038.1	MA0038.1	0.00183
MA0039.2	MA0039.2	0.463
MA0040.1	MA0040.1	0.606
MA0041.1	MA0041.1	0.275
MA0042.1	MA0042.1	0.825
MA0043.1	MA0043.1	3.05185e-4
MA0046.1	MA0046.1	0.201
MA0047.2	MA0047.2	0.22
MA0048.1	MA0048.1	0.479
MA0050.1	MA0050.1	2.16279e-7
MA0051.1	MA0051.1	5.94986e-5
MA0052.1	MA0052.1	0.00554
MA0055.1	MA0055.1	0.42
MA0057.1	MA0057.1	0.0835
MA0058.1	MA0058.1	0.459
MA0059.1	MA0059.1	0.506
MA0060.1	MA0060.1	8.76173e-8
MA0061.1	MA0061.1	0.00627
MA0062.2	MA0062.2	0.00252
MA0065.2	MA0065.2	0.0863
MA0066.1	MA0066.1	0.0158
MA0067.1	MA0067.1	0.763
MA0068.1	MA0068.1	9.82421e-5
MA0069.1	MA0069.1	0.688
MA0070.1	MA0070.1	0.767
MA0071.1	MA0071.1	0.423
MA0072.1	MA0072.1	0.87
MA0073.1	MA0073.1	0.292
MA0074.1	MA0074.1	0.25
MA0076.1	MA0076.1	9.63932e-4
MA0077.1	MA0077.1	0.00419
MA0078.1	MA0078.1	0.759
MA0079.2	MA0079.2	0.515
MA0080.2	MA0080.2	6.67939e-7
MA0081.1	MA0081.1	0.0761
MA0083.1	MA0083.1	2.07996e-6
MA0084.1	MA0084.1	0.626
MA0087.1	MA0087.1	0.772
MA0088.1	MA0088.1	0.908
MA0090.1	MA0090.1	0.283
MA0091.1	MA0091.1	0.00791
MA0092.1	MA0092.1	0.118
MA0093.1	MA0093.1	0.355
MA0099.2	MA0099.2	6.77307e-10
MA0100.1	MA0100.1	0.26
MA0101.1	MA0101.1	0.0367
MA0102.2	MA0102.2	0.485
MA0103.1	MA0103.1	0.00326
MA0104.2	MA0104.2	0.147
MA0105.1	MA0105.1	0.00485
MA0106.1	MA0106.1	0.884
MA0107.1	MA0107.1	0.0052
MA0108.2	MA0108.2	0.76
MA0111.1	MA0111.1	0.701
MA0112.2	MA0112.2	0.00146
MA0113.1	MA0113.1	0.346
MA0114.1	MA0114.1	0.225
MA0115.1	MA0115.1	0.657
MA0116.1	MA0116.1	0.0135
MA0117.1	MA0117.1	0.479
MA0119.1	MA0119.1	0.206
MA0122.1	MA0122.1	0.794
MA0124.1	MA0124.1	0.329
MA0125.1	MA0125.1	0.00844
MA0131.1	MA0131.1	0.313
MA0135.1	MA0135.1	0.639
MA0136.1	MA0136.1	7.85551e-4
MA0137.2	MA0137.2	7.16127e-4
MA0138.2	MA0138.2	0.0588
MA0139.1	MA0139.1	0.83
MA0140.1	MA0140.1	0.0798
MA0141.1	MA0141.1	0.169
MA0142.1	MA0142.1	7.71796e-4
MA0143.1	MA0143.1	3.90304e-4
MA0144.1	MA0144.1	0.00784
MA0145.1	MA0145.1	0.115
MA0146.1	MA0146.1	0.0303
MA0147.1	MA0147.1	0.146
MA0148.1	MA0148.1	0.205
MA0149.1	MA0149.1	0.864
MA0150.1	MA0150.1	0.118
MA0152.1	MA0152.1	0.786
MA0153.1	MA0153.1	0.831
MA0154.1	MA0154.1	0.00813
MA0155.1	MA0155.1	0.0297
MA0156.1	MA0156.1	0.0807
MA0157.1	MA0157.1	0.879
MA0159.1	MA0159.1	0.692
MA0160.1	MA0160.1	0.103
MA0162.1	MA0162.1	0.207
MA0163.1	MA0163.1	0.032
MA0164.1	MA0164.1	0.287
MA0258.1	MA0258.1	0.0126
MA0259.1	MA0259.1	0.378

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11285

Novel motif	Logo	P-value
1	1	0.151
10	10	0.381
100	100	0.865
101	101	0.925
102	102	0.756
103	103	0.0753
104	104	0.582
105	105	0.974
106	106	0.0371
107	107	0.364
108	108	0.996
109	109	0.0879
11	11	0.0504
110	110	0.465
111	111	0.107
112	112	0.02
113	113	0.308
114	114	0.0235
115	115	0.636
116	116	0.621
117	117	0.443
118	118	0.217
119	119	0.0917
12	12	0.581
120	120	0.933
121	121	0.205
122	122	0.61
123	123	0.592
124	124	0.814
125	125	0.288
126	126	0.196
127	127	0.0615
128	128	0.094
129	129	0.607
13	13	0.779
130	130	0.352
131	131	0.97
132	132	0.871
133	133	0.29
134	134	0.831
135	135	0.187
136	136	0.132
137	137	0.261
138	138	0.213
139	139	0.0807
14	14	0.714
140	140	0.87
141	141	0.233
142	142	0.664
143	143	0.041
144	144	0.194
145	145	0.184
146	146	0.939
147	147	0.571
148	148	0.468
149	149	0.0129
15	15	0.412
150	150	0.484
151	151	0.197
152	152	0.122
153	153	0.845
154	154	0.692
155	155	0.756
156	156	0.717
157	157	0.363
158	158	0.702
159	159	0.562
16	16	0.218
160	160	0.401
161	161	0.717
162	162	0.86
163	163	0.722
164	164	0.936
165	165	0.72
166	166	0.981
167	167	0.414
168	168	0.256
169	169	0.0106
17	17	0.276
18	18	0.427
19	19	0.0516
2	2	0.338
20	20	0.598
21	21	0.377
22	22	0.0542
23	23	0.0123
24	24	0.392
25	25	0.632
26	26	0.598
27	27	0.124
28	28	0.965
29	29	0.968
3	3	0.149
30	30	0.364
31	31	0.365
32	32	0.00345
33	33	0.75
34	34	0.181
35	35	0.638
36	36	0.916
37	37	0.211
38	38	0.389
39	39	0.622
4	4	0.896
40	40	0.262
41	41	0.0702
42	42	0.503
43	43	0.0578
44	44	0.253
45	45	0.403
46	46	0.197
47	47	0.436
48	48	0.349
49	49	0.182
5	5	0.319
50	50	0.706
51	51	0.295
52	52	0.495
53	53	0.482
54	54	0.0924
55	55	0.254
56	56	0.535
57	57	0.91
58	58	0.477
59	59	0.0195
6	6	0.362
60	60	0.0982
61	61	0.909
62	62	0.164
63	63	0.23
64	64	0.633
65	65	0.0633
66	66	0.385
67	67	0.531
68	68	0.211
69	69	0.401
7	7	0.755
70	70	0.0889
71	71	0.136
72	72	0.37
73	73	0.0877
74	74	0.924
75	75	0.683
76	76	0.863
77	77	0.101
78	78	0.823
79	79	0.054
8	8	0.285
80	80	0.282
81	81	0.559
82	82	0.00139
83	83	0.797
84	84	0.636
85	85	0.00309
86	86	0.692
87	87	0.962
88	88	0.948
89	89	0.0633
9	9	0.129
90	90	0.673
91	91	0.337
92	92	0.0241
93	93	0.848
94	94	0.144
95	95	0.349
96	96	0.444
97	97	0.81
98	98	0.314
99	99	0.6

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11285

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100189 small cell lung cancer cell sample
FF:0102206 small cell lung cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
5409 (lung small cell carcinoma)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102206 (small cell lung cancer cell line sample)
0100189 (small cell lung cancer cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr7:96654133..96654150,-!p1@DLX5!2.75!567.78!DLX5;;chr6:1312325..1312340,+!p1@FOXQ1!2.32!329.58!FOXQ1;;chr8:40755333..40755352,-!p1@ZMAT4!2.32!209.51!ZMAT4;;chr3:181429704..181429722,+!p1@SOX2!2.06!114.98!SOX2;;chr7:27205136..27205164,-!p1@HOXA9!2.03!107.07!HOXA9;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!2.02!935.53!ZNF595;;chr5:174151612..174151633,+!p2@MSX2!1.82!65.28!MSX2;;chr5:174151553..174151610,+!p1@MSX2!1.74!88.55!MSX2;;chr3:181429741..181429767,+!p2@SOX2!1.74!54.33!SOX2;;chr7:27205106..27205134,-!p2@HOXA9!1.70!48.68!HOXA9;;chr2:180427261..180427297,-!p6@ZNF385B!1.66!45.07!ZNF385B;;chr3:71355163..71355209,-!p5@FOXP1!1.61!54.67!FOXP1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.58!36.59!HOXC5;;chr4:4861385..4861398,+!p1@MSX1!1.55!99.96!MSX1;;chr7:96634878..96634900,+!p2@DLX6!1.54!33.88!DLX6;;chr18:53254566..53254567,-!p8@TCF4!1.53!53.08!TCF4;;chr20:22564895..22564910,-!p1@FOXA2!1.53!33.09!FOXA2;;chr15:57511609..57511651,+!p2@TCF12!1.52!52.97!TCF12;;chr7:96635178..96635181,+!p1@DLX6!1.51!31.40!DLX6;;chr8:102504651..102504683,+!p1@GRHL2!1.49!29.82!GRHL2;;chr7:156803329..156803362,-!p1@MNX1!1.45!27.11!MNX1;;chr7:19157248..19157268,-!p1@TWIST1!1.43!69.46!TWIST1;;chr3:137483141..137483162,+!p1@SOX14!1.43!25.98!SOX14;;chr13:28543285..28543314,-!p2@CDX2!1.42!25.19!CDX2;;chr13:72441315..72441454,-!p1@DACH1!1.41!48.34!DACH1;;chr4:109090075..109090095,-!p2@LEF1!1.41!24.96!LEF1;;chr6:106534192..106534224,+!p1@PRDM1!1.39!64.94!PRDM1;;chr9:1050331..1050363,+!p1@DMRT2!1.39!23.72!DMRT2;;chr18:53257001..53257015,-!p5@TCF4!1.38!39.19!TCF4;;chr7:96634850..96634874,+!p3@DLX6!1.38!23.15!DLX6;;chr6:106534230..106534254,+!p2@PRDM1!1.37!55.80!PRDM1;;chr18:53253297..53253322,-!p30@TCF4!1.36!21.80!TCF4;;chr17:59477233..59477263,+!p1@TBX2!1.34!62.69!TBX2;;chr14:38064429..38064486,-!p1@FOXA1!1.34!21.01!FOXA1;;chr13:28543431..28543487,-!p1@CDX2!1.33!20.22!CDX2;;chr4:109089901..109089930,-!p3@LEF1!1.30!18.97!LEF1;;chr21:38071430..38071456,+!p1@SIM2!1.27!17.73!SIM2;;chr18:53089453..53089482,-!p11@TCF4!1.25!16.72!TCF4;;chr17:41622925..41622976,-!p3@ETV4!1.24!24.51!ETV4;;chr17:46703687..46703740,-!p1@HOXB9!1.23!16.04!HOXB9;;chr8:102504979..102505010,+!p2@GRHL2!1.22!15.47!GRHL2;;chr6:21597765..21597779,+!p2@SOX4!1.21!122.43!SOX4;;chr8:116681409..116681431,-!p2@TRPS1!1.21!41.56!TRPS1;;chr7:96634908..96634923,+!p4@DLX6!1.20!15.02!DLX6;;chr17:41623692..41623715,-!p1@ETV4!1.19!61.78!ETV4;;chr13:73633131..73633149,+!p1@KLF5!1.18!149.43!KLF5;;chr18:53069419..53069450,-!p34@TCF4!1.18!14.23!TCF4;;chr18:53089538..53089578,-!p14@TCF4!1.18!14.23!TCF4;;chr18:53089521..53089533,-!p22@TCF4!1.17!13.67!TCF4;;chr18:53089493..53089517,-!p15@TCF4!1.16!13.55!TCF4;;chr17:46703212..46703238,-!p2@HOXB9!1.16!13.33!HOXB9;;chr12:80084737..80084763,-!p3@PAWR!1.15!48.57!PAWR;;chr6:28321909..28321965,-!p3@ZNF323!1.15!13.21!ZNF323;;chr8:116681221..116681236,-!p3@TRPS1!1.14!38.18!TRPS1;;chr1:214161272..214161322,+!p1@PROX1!1.14!18.07!PROX1;;chr18:45935720..45935772,-!p1@ZBTB7C!1.14!12.76!ZBTB7C;;chr18:53255415..53255491,-!p1@TCF4!1.12!102.67!TCF4;;chr6:135502501..135502546,+!p1@MYB!1.12!14.68!MYB;;chr3:25470156..25470227,+!p2@RARB!1.11!11.86!RARB;;chr15:57511589..57511608,+!p4@TCF12!1.10!11.52!TCF12;;chr3:25469724..25469773,+!p1@RARB!1.09!16.49!RARB;;chr20:22565370..22565388,-!p2@FOXA2!1.09!11.41!FOXA2;;chr2:180427235..180427244,-!p10@ZNF385B!1.09!11.29!ZNF385B;;chr11:31832658..31832681,-!p1@PAX6!1.09!11.18!PAX6;;chr6:21593973..21593988,+!p1@SOX4!1.08!395.31!SOX4;;chr18:53254750..53254764,-!p58@TCF4!1.06!10.39!TCF4;;chr15:60884706..60884743,-!p1@RORA!1.05!53.08!RORA;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.12!HOXB7;;chr18:53069389..53069416,-!p40@TCF4!1.04!10.05!TCF4;;chr18:53253112..53253124,-!p51@TCF4!1.04!10.05!TCF4;;chr3:185826855..185826911,-!p1@ETV5!1.03!267.91!ETV5;;chr8:116681194..116681214,-!p1@TRPS1!1.03!91.71!TRPS1;;chr21:36421535..36421610,-!p2@RUNX1!1.03!35.47!RUNX1;;chr2:60780607..60780624,-!p2@BCL11A!1.03!30.61!BCL11A;;chr6:21597600..21597664,+!p3@SOX4!1.03!16.38!SOX4;;chr20:20348740..20348757,+!p1@INSM1!1.03!9.71!INSM1;;chr13:28543388..28543406,-!p3@CDX2!1.03!9.71!CDX2;;chr18:53256971..53256984,-!p26@TCF4!1.02!9.49!TCF4;;chr2:180427245..180427256,-!p12@ZNF385B!1.02!9.37!ZNF385B;;chr9:110252035..110252057,-!p1@KLF4!1.01!149.43!KLF4;;chr17:59477197..59477212,+!p2@TBX2!1.00!15.81!TBX2;;chr17:46132044..46132080,+!p4@NFE2L1!1.00!9.04!NFE2L1;;chr8:102504690..102504704,+!p3@GRHL2!1.00!9.04!GRHL2;;chr2:171571827..171571853,+!p1@SP5!1.00!8.92!SP5;;chr1:10856665..10856683,-!p4@CASZ1!1.00!8.92!CASZ1;;chr17:59477275..59477286,+!p3@TBX2!0.99!11.86!TBX2;;chr18:53253323..53253359,-!p19@TCF4!0.99!8.70!TCF4;;chr2:180427304..180427323,-!p7@ZNF385B!0.99!8.70!ZNF385B;;chr5:76383133..76383186,-!p2@ZBED3!0.98!17.62!ZBED3;;chr2:171572786..171572840,+!p2@SP5!0.98!8.47!SP5;;chr4:109089996..109090012,-!p5@LEF1!0.98!8.47!LEF1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.98!8.47!LHX1;;chr6:10419768..10419819,-!p6@TFAP2A!0.97!8.25!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!0.97!8.25!ELF3;;chr13:72441074..72441172,-!p2@DACH1!0.97!8.25!DACH1;;chr2:60780753..60780800,-!p1@BCL11A!0.96!41.45!BCL11A;;chr3:48282587..48282603,+!p1@ZNF589!0.96!36.93!ZNF589;;chr17:41623009..41623053,-!p4@ETV4!0.96!13.21!ETV4;;chr12:54785074..54785122,-!p2@ZNF385A!0.96!12.76!ZNF385A;;chr7:148581327..148581347,-!p2@EZH2!0.95!27.78!EZH2;;chr7:96654026..96654061,-!p2@DLX5!0.95!7.91!DLX5;;chr12:115121962..115121987,-!p1@TBX3!0.94!67.43!TBX3;;chr6:126102254..126102289,+!p5@NCOA7!0.94!22.14!NCOA7;;chr18:56532100..56532130,+!p1@ZNF532!0.94!14.57!ZNF532;;chr7:14028743..14028799,-!p3@ETV1!0.94!9.83!ETV1;;chr6:28321971..28321995,-!p1@ZNF323!0.94!7.79!ZNF323;;chr17:48072574..48072597,-!p1@DLX3!0.94!7.79!DLX3;;chr1:10856639..10856662,-!p2@CASZ1!0.94!7.68!CASZ1;;chr1:10856694..10856715,-!p3@CASZ1!0.94!7.68!CASZ1;;chr3:25470062..25470084,+!p4@RARB!0.94!7.68!RARB;;chr7:27213893..27213954,-!p1@HOXA10!0.94!7.68!HOXA10;;chr4:4291837..4291859,-!p2@LYAR!0.93!25.64!LYAR;;chr1:209979467..209979494,-!p1@IRF6!0.93!8.58!IRF6;;chr7:27224842..27224872,-!p1@HOXA11!0.93!7.45!HOXA11;;chrX:85403445..85403479,+!p2@DACH2!0.93!7.45!DACH2;;chr7:27179814..27179840,-!p4@HOXA3!0.92!7.23!HOXA3;;chr21:38071403..38071428,+!p2@SIM2!0.92!7.23!SIM2;;chr19:50432453..50432468,+!p1@ATF5!0.91!413.27!ATF5;;chr6:45390300..45390335,+!p4@RUNX2!0.91!11.41!RUNX2;;chr12:46123519..46123529,+!p4@ARID2!0.91!9.49!ARID2;;chr7:20826426..20826432,-!p2@SP8!0.91!7.12!SP8;;chr6:99282438..99282457,+!p2@POU3F2!0.90!6.89!POU3F2;;chr6:1312155..1312187,+!p2@FOXQ1!0.89!6.78!FOXQ1;;chr7:27190547..27190591,-!p1@HOXA6!0.89!6.78!HOXA6;;chr18:53068911..53068935,-!p4@TCF4!0.88!7.57!TCF4;;chr9:124976154..124976177,-!p5@LHX6!0.88!6.66!LHX6;;chr2:169312725..169312810,+!p1@CERS6!0.87!164.34!CERS6;;chr6:19837592..19837621,+!p1@ID4!0.87!41.11!ID4;;chr1:8763440..8763460,-!p2@RERE!0.87!34.22!RERE;;chr17:41277372..41277418,-!p1@BRCA1!0.87!24.62!BRCA1;;chr2:171572483..171572501,+!p5@SP5!0.87!6.44!SP5;;chr4:109090408..109090441,-!p21@LEF1!0.87!6.44!LEF1;;chr1:120190786..120190915,-!p1@ZNF697!0.86!47.44!ZNF697;;chr6:91006518..91006570,-!p1@BACH2!0.86!14.91!BACH2;;chr17:41623075..41623101,-!p9@ETV4!0.86!7.45!ETV4;;chr3:25469815..25469866,+!p3@RARB!0.86!6.21!RARB;;chr1:149858461..149858479,+!p1@BOLA1!0.85!2557.21!BOLA1;;chr12:46123464..46123512,+!p1@ARID2!0.85!37.50!ARID2;;chr18:53257027..53257052,-!p3@TCF4!0.85!25.53!TCF4;;chr1:164528445..164528459,+!p2@PBX1!0.85!19.88!PBX1;;chr6:45390025..45390076,+!p2@RUNX2!0.85!15.36!RUNX2;;chr4:109090054..109090073,-!p7@LEF1!0.85!6.10!LEF1;;chr18:53068255..53068283,-!p43@TCF4!0.84!5.99!TCF4;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.87!HOXA11;;chr17:41622834..41622883,-!p6@ETV4!0.83!7.12!ETV4;;chr18:53254728..53254740,-!p79@TCF4!0.83!5.76!TCF4;;chr4:106068026..106068084,+!p1@TET2!0.82!54.78!TET2;;chr6:45390269..45390298,+!p5@RUNX2!0.82!9.71!RUNX2;;chr21:34144157..34144175,-!p3@GCFC1!0.82!9.26!GCFC1;;chr14:37131058..37131139,+!p1@PAX9!0.82!5.65!PAX9;;chr9:124976185..124976212,-!p4@LHX6!0.82!5.53!LHX6;;chr6:45390002..45390023,+!p6@RUNX2!0.81!9.83!RUNX2;;chr9:110250697..110250738,-!p2@KLF4!0.81!6.44!KLF4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.81!5.42!HOXC5;;chr20:18038521..18038571,-!p1@OVOL2!0.81!5.42!OVOL2;;chr17:41622765..41622821,-!p2@ETV4!0.80!8.47!ETV4;;chr5:134369905..134369972,-!p1@PITX1!0.80!8.47!PITX1;;chrX:84499081..84499115,+!p2@ZNF711!0.80!8.02!ZNF711;;chr17:46688334..46688385,-!p1@HOXB7!0.80!7.91!HOXB7;;chr3:40547564..40547616,+!p1@ZNF620!0.80!7.79!ZNF620;;chr2:60778035..60778060,-!p4@BCL11A!0.79!6.32!BCL11A;;chr20:22565185..22565223,-!p3@FOXA2!0.79!5.20!FOXA2;;chr10:114710098..114710130,+!p2@TCF7L2!0.78!41.56!TCF7L2;;chr6:126102292..126102329,+!p3@NCOA7!0.78!17.96!NCOA7;;chr1:164528687..164528711,+!p6@PBX1!0.78!5.99!PBX1;;chr13:28543316..28543329,-!p4@CDX2!0.78!5.08!CDX2;;chr10:119302232..119302265,+!p1@EMX2!0.78!4.97!EMX2;;chr2:171571931..171571959,+!p3@SP5!0.78!4.97!SP5;;chr18:53255323..53255332,-!p31@TCF4!0.78!4.97!TCF4;;chr5:124084493..124084524,-!p2@ZNF608!0.77!11.63!ZNF608;;chr7:148581360..148581425,-!p1@EZH2!0.76!25.75!EZH2;;chr4:146403912..146403972,+!p5@SMAD1!0.76!6.32!SMAD1;;chr4:109090106..109090124,-!p10@LEF1!0.76!4.74!LEF1;;chr11:47236584..47236679,+!p1@DDB2!0.75!55.46!DDB2;;chr3:185826814..185826825,-!p3@ETV5!0.75!9.04!ETV5;;chr17:46703942..46703964,-!p4@HOXB9!0.75!4.63!HOXB9;;chr7:96635448..96635470,+!p5@DLX6!0.75!4.63!DLX6;;chr6:21597514..21597578,+!p4@SOX4!0.74!8.02!SOX4;;chrX:84498989..84499003,+!p1@ZNF711!0.74!6.32!ZNF711;;chr2:10091815..10091864,+!p1@GRHL1!0.74!6.21!GRHL1;;chr6:45390077..45390105,+!p9@RUNX2!0.74!5.99!RUNX2;;chr6:10415484..10415508,-!p3@TFAP2A!0.74!4.52!TFAP2A;;chr6:99282475..99282501,+!p1@POU3F2!0.74!4.52!POU3F2;;chr8:102504932..102504952,+!p4@GRHL2!0.74!4.52!GRHL2;;chr17:48045917..48045977,+!p1@DLX4!0.74!4.52!DLX4;;chr21:36260980..36261011,-!p1@RUNX1!0.73!140.28!RUNX1;;chr9:20622444..20622468,-!p2@MLLT3!0.73!15.59!MLLT3;;chr5:172662197..1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65733..150065752,+!p4@REPIN1,p4@ZNF775!0.27!1.24!ZNF775;;chr5:135468516..135468621,+!p1@SMAD5!0.26!62.69!SMAD5;;chr5:138629628..138629688,+!p2@MATR3!0.26!38.85!MATR3;;chr19:6424783..6424802,-!p2@KHSRP!0.26!32.87!KHSRP;;chr20:30795511..30795562,-!p1@PLAGL2!0.26!29.70!PLAGL2;;chr2:219524310..219524385,-!p1@ZNF142!0.26!23.49!ZNF142;;chr20:35201993..35202050,+!p1@TGIF2!0.26!17.85!TGIF2;;chr12:133758072..133758114,+!p1@ZNF268!0.26!14.12!ZNF268;;chr1:8877692..8877732,-!p1@RERE!0.26!12.65!RERE;;chr17:47439437..47439533,-!p1@ZNF652!0.26!12.65!ZNF652;;chr2:208031542..208031595,-!p2@KLF7!0.26!11.07!KLF7;;chr12:133614062..133614117,+!p1@ZNF84!0.26!10.05!ZNF84;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.26!9.83!SNAPC4;;chr2:178129358..178129403,-!p5@NFE2L2!0.26!5.99!NFE2L2;;chr8:128750654..128750793,+!p3@MYC!0.26!5.87!MYC;;chr10:105110890..105110914,-!p2@PCGF6!0.26!5.31!PCGF6;;chr12:122516626..122516645,+!p2@MLXIP!0.26!3.84!MLXIP;;chr9:37465273..37465338,-!p2@ZBTB5!0.26!3.50!ZBTB5;;chr15:64752804..64752842,+!p2@ZNF609!0.26!3.16!ZNF609;;chr18:56530692..56530723,+!p2@ZNF532!0.26!3.05!ZNF532;;chr11:62369204..62369217,-!p7@MTA2!0.26!2.82!MTA2;;chr19:8578683..8578750,-!p2@ZNF414!0.26!2.71!ZNF414;;chr1:204042215..204042228,+!p2@SOX13!0.26!2.71!SOX13;;chr10:98592674..98592724,+!p2@LCOR!0.26!2.48!LCOR;;chr14:45722335..45722348,-!p3@MIS18BP1!0.26!2.03!MIS18BP1;;chr1:935496..935509,-!p3@HES4!0.26!1.69!HES4;;chr15:66994615..66994630,+!p3@SMAD6!0.26!1.58!SMAD6;;chr1:247095286..247095297,-!p4@AHCTF1!0.26!1.47!AHCTF1;;chr6:122720681..122720713,+!p3@HSF2!0.26!1.24!HSF2;;chr8:81397820..81397836,+!p2@ZBTB10!0.26!1.24!ZBTB10;;chr22:39916558..39916579,+!p1@ATF4!0.25!472.91!ATF4;;chr11:65101305..65101359,+!p1@DPF2!0.25!63.70!DPF2;;chr10:38299546..38299686,+!p1@ZNF33A!0.25!23.15!ZNF33A;;chr4:38665810..38665827,+!p1@KLF3!0.25!22.82!KLF3;;chr11:10879572..10879591,-!p2@ZBED5!0.25!21.12!ZBED5;;chr5:138629389..138629416,+!p4@MATR3!0.25!19.54!MATR3;;chr8:144718171..144718244,+!p1@ZNF623!0.25!16.38!ZNF623;;chr2:113033164..113033219,+!p1@ZC3H6!0.25!12.88!ZC3H6;;chr2:148778590..148778647,+!p2@MBD5!0.25!11.63!MBD5;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.25!10.28!ZNF410;;chr6:35227480..35227546,+!p1@ZNF76!0.25!10.05!ZNF76;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.25!10.05!SOX7;;chr9:95640300..95640345,-!p1@ZNF484!0.25!8.47!ZNF484;;chr19:58361185..58361235,+!p2@ZNF587!0.25!8.02!ZNF587;;chr17:42298615..42298692,-!p2@UBTF!0.25!7.57!UBTF;;chr19:19976683..19976709,+!p1@ZNF253!0.25!6.44!ZNF253;;chr10:43134001..43134026,-!p1@ZNF33B!0.25!6.44!ZNF33B;;chr17:41322281..41322328,-!p2@BRCA1!0.25!3.84!BRCA1;;chr16:8962544..8962584,-!p2@CARHSP1!0.25!2.94!CARHSP1;;chr4:56412767..56412799,-!p3@CLOCK!0.25!2.82!CLOCK;;chr8:128750175..128750201,+!p8@MYC!0.25!2.03!MYC;;chr12:124457725..124457736,+!p2@ZNF664!0.25!2.03!ZNF664;;chr8:71316428..71316459,-!p2@NCOA2!0.25!1.92!NCOA2;;chr1:247095162..247095173,-!p3@AHCTF1!0.25!1.69!AHCTF1;;chr18:77867177..77867197,+!p3@ADNP2!0.25!1.58!ADNP2;;chr9:86593238..86593252,-!p3@HNRNPK!0.25!1.58!HNRPK;;chr9:88969226..88969237,-!p4@ZCCHC6!0.25!1.58!ZCCHC6;;chr12:133613902..133613924,+!p4@ZNF84!0.25!1.36!ZNF84;;chr11:62369806..62369837,-!p8@MTA2!0.25!1.24!MTA2;;chr3:14990132..14990175,+!p5@NR2C2!0.25!1.24!NR2C2;;chr11:120107344..120107351,+!p1@POU2F3!0.25!1.13!POU2F3;;chr13:37393324..37393335,+!p2@RFXAP!0.25!1.02!RFXAP;;chr11:19262461..19262476,-!p5@E2F8!0.25!0.79!E2F8;;chr11:65554563..65554576,+!p2@OVOL1!0.25!0.79!OVOL1;;
+|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0100353,FF:0101120
 |fonse_cell_line_closure=FF:0100353,FF:0101120

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FF:10541-107H1: Difference between revisions

From FANTOM5_SSTAR

Revision as of 19:18, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0