FF:10544-107H4: Difference between revisions

Revision as of 19:18, 9 July 2012

Name:	oral squamous cell carcinoma cell line:SAS
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	tongue
dev stage	NA
sex	unknown
age	NA
cell type	unclassifiable
cell line	SAS
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.251
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.392
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0.0475
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.31
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0409
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0561
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0.0475
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.188
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.0475
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.224
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.129
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.713
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.918
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0355
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.347
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0292
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0903
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0903
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0409
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.461
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.402
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0774
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11810

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0206
MA0003.1	MA0003.1	0.58
MA0004.1	MA0004.1	0.455
MA0006.1	MA0006.1	0.567
MA0007.1	MA0007.1	0.102
MA0009.1	MA0009.1	0.416
MA0014.1	MA0014.1	0.288
MA0017.1	MA0017.1	0.51
MA0018.2	MA0018.2	0.507
MA0019.1	MA0019.1	0.824
MA0024.1	MA0024.1	1.09721e-4
MA0025.1	MA0025.1	0.985
MA0027.1	MA0027.1	0.272
MA0028.1	MA0028.1	0.0184
MA0029.1	MA0029.1	0.45
MA0030.1	MA0030.1	0.285
MA0031.1	MA0031.1	0.496
MA0035.2	MA0035.2	0.995
MA0038.1	MA0038.1	0.137
MA0039.2	MA0039.2	0.824
MA0040.1	MA0040.1	0.504
MA0041.1	MA0041.1	0.383
MA0042.1	MA0042.1	0.64
MA0043.1	MA0043.1	0.997
MA0046.1	MA0046.1	0.816
MA0047.2	MA0047.2	0.882
MA0048.1	MA0048.1	0.0949
MA0050.1	MA0050.1	0.661
MA0051.1	MA0051.1	0.216
MA0052.1	MA0052.1	0.715
MA0055.1	MA0055.1	0.039
MA0057.1	MA0057.1	1
MA0058.1	MA0058.1	0.956
MA0059.1	MA0059.1	0.11
MA0060.1	MA0060.1	0.0573
MA0061.1	MA0061.1	0.0733
MA0062.2	MA0062.2	0.098
MA0065.2	MA0065.2	0.663
MA0066.1	MA0066.1	0.693
MA0067.1	MA0067.1	0.16
MA0068.1	MA0068.1	0.767
MA0069.1	MA0069.1	0.874
MA0070.1	MA0070.1	0.93
MA0071.1	MA0071.1	0.751
MA0072.1	MA0072.1	0.406
MA0073.1	MA0073.1	0.733
MA0074.1	MA0074.1	0.316
MA0076.1	MA0076.1	0.0362
MA0077.1	MA0077.1	0.487
MA0078.1	MA0078.1	0.111
MA0079.2	MA0079.2	0.87
MA0080.2	MA0080.2	9.36374e-7
MA0081.1	MA0081.1	0.0466
MA0083.1	MA0083.1	0.558
MA0084.1	MA0084.1	0.0967
MA0087.1	MA0087.1	0.0928
MA0088.1	MA0088.1	0.413
MA0090.1	MA0090.1	0.00107
MA0091.1	MA0091.1	0.0846
MA0092.1	MA0092.1	0.505
MA0093.1	MA0093.1	0.506
MA0099.2	MA0099.2	9.33013e-10
MA0100.1	MA0100.1	0.574
MA0101.1	MA0101.1	0.24
MA0102.2	MA0102.2	0.817
MA0103.1	MA0103.1	4.78792e-7
MA0104.2	MA0104.2	0.03
MA0105.1	MA0105.1	0.00202
MA0106.1	MA0106.1	8.8997e-6
MA0107.1	MA0107.1	0.0983
MA0108.2	MA0108.2	0.784
MA0111.1	MA0111.1	0.956
MA0112.2	MA0112.2	0.222
MA0113.1	MA0113.1	0.0653
MA0114.1	MA0114.1	0.48
MA0115.1	MA0115.1	0.131
MA0116.1	MA0116.1	0.00819
MA0117.1	MA0117.1	0.0797
MA0119.1	MA0119.1	0.593
MA0122.1	MA0122.1	0.448
MA0124.1	MA0124.1	0.0893
MA0125.1	MA0125.1	0.628
MA0131.1	MA0131.1	0.311
MA0135.1	MA0135.1	0.771
MA0136.1	MA0136.1	0.038
MA0137.2	MA0137.2	0.0279
MA0138.2	MA0138.2	0.339
MA0139.1	MA0139.1	0.696
MA0140.1	MA0140.1	0.784
MA0141.1	MA0141.1	0.687
MA0142.1	MA0142.1	0.0858
MA0143.1	MA0143.1	0.786
MA0144.1	MA0144.1	0.329
MA0145.1	MA0145.1	0.435
MA0146.1	MA0146.1	0.48
MA0147.1	MA0147.1	0.00536
MA0148.1	MA0148.1	0.281
MA0149.1	MA0149.1	0.298
MA0150.1	MA0150.1	0.658
MA0152.1	MA0152.1	0.775
MA0153.1	MA0153.1	0.642
MA0154.1	MA0154.1	0.0651
MA0155.1	MA0155.1	0.228
MA0156.1	MA0156.1	0.273
MA0157.1	MA0157.1	0.402
MA0159.1	MA0159.1	0.35
MA0160.1	MA0160.1	0.671
MA0162.1	MA0162.1	0.0586
MA0163.1	MA0163.1	7.84473e-5
MA0164.1	MA0164.1	0.246
MA0258.1	MA0258.1	0.0788
MA0259.1	MA0259.1	0.424

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11810

Novel motif	Logo	P-value
1	1	0.881
10	10	0.842
100	100	0.684
101	101	0.198
102	102	0.304
103	103	0.376
104	104	0.29
105	105	0.848
106	106	0.237
107	107	0.0601
108	108	0.361
109	109	0.314
11	11	0.427
110	110	0.266
111	111	0.925
112	112	0.574
113	113	0.016
114	114	0.455
115	115	0.414
116	116	0.0856
117	117	0.601
118	118	0.327
119	119	0.623
12	12	0.531
120	120	0.0428
121	121	0.672
122	122	0.246
123	123	0.564
124	124	0.00655
125	125	0.727
126	126	0.643
127	127	0.439
128	128	0.0868
129	129	0.186
13	13	0.142
130	130	0.752
131	131	0.0993
132	132	0.648
133	133	0.0141
134	134	9.5436e-4
135	135	0.0162
136	136	0.0264
137	137	0.121
138	138	0.82
139	139	0.0649
14	14	0.881
140	140	0.722
141	141	0.754
142	142	0.662
143	143	0.0645
144	144	0.595
145	145	0.986
146	146	0.825
147	147	0.321
148	148	0.889
149	149	0.518
15	15	0.542
150	150	0.13
151	151	0.671
152	152	0.255
153	153	0.724
154	154	0.383
155	155	0.892
156	156	0.948
157	157	0.993
158	158	0.186
159	159	0.394
16	16	0.349
160	160	0.78
161	161	0.792
162	162	0.476
163	163	0.594
164	164	0.104
165	165	0.885
166	166	0.0633
167	167	0.331
168	168	0.536
169	169	0.828
17	17	0.355
18	18	0.497
19	19	0.0357
2	2	0.841
20	20	0.261
21	21	0.529
22	22	0.648
23	23	0.274
24	24	0.749
25	25	0.887
26	26	0.709
27	27	0.599
28	28	0.521
29	29	0.274
3	3	0.898
30	30	0.43
31	31	0.219
32	32	0.0013
33	33	0.143
34	34	0.069
35	35	0.197
36	36	0.651
37	37	0.555
38	38	0.953
39	39	0.528
4	4	0.515
40	40	0.586
41	41	0.114
42	42	0.932
43	43	0.0365
44	44	0.447
45	45	0.59
46	46	0.426
47	47	0.657
48	48	0.651
49	49	0.0362
5	5	0.0593
50	50	0.565
51	51	0.776
52	52	0.535
53	53	0.146
54	54	0.69
55	55	0.833
56	56	0.58
57	57	0.219
58	58	0.84
59	59	0.173
6	6	0.497
60	60	0.47
61	61	0.246
62	62	0.631
63	63	0.797
64	64	0.81
65	65	0.961
66	66	0.267
67	67	0.747
68	68	0.13
69	69	0.362
7	7	0.797
70	70	0.24
71	71	0.471
72	72	0.574
73	73	0.387
74	74	0.576
75	75	0.143
76	76	0.11
77	77	0.685
78	78	0.108
79	79	0.0793
8	8	0.97
80	80	0.192
81	81	0.0685
82	82	0.00331
83	83	0.502
84	84	0.703
85	85	0.00833
86	86	0.966
87	87	0.0662
88	88	0.773
89	89	0.342
9	9	0.396
90	90	0.17
91	91	0.141
92	92	0.371
93	93	0.542
94	94	0.192
95	95	0.158
96	96	0.194
97	97	0.679
98	98	0.22
99	99	0.948

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11810

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103981 SAS cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
1749 (squamous cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001723 (tongue)
0003343 (mucosa of oral region)
0000033 (head)
0000974 (neck)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0004785 (respiratory system mucosa)
0001032 (sensory system)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0004456 (entire sense organ system)
0000166 (oral opening)
0001033 (gustatory system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102211 (oral squamous cell carcinoma cell line sample)
0102027 (oral cancer cell line sample)
0102709 (head and neck squamous cell carcinoma cell line sample)
0100786 (tongue cancer cell line sample)
0103980 (tongue squamous cell carcinoma cell line sample)
0103981 (SAS cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0008814 (pharyngeal arch system)
UBERON:0010056 (future tongue)
UBERON:0010316 (germ layer / neural crest)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.28!188.19!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.14!137.82!ELF3;;chr5:2751762..2751784,-!p1@IRX2!2.02!104.67!IRX2;;chr2:176969228..176969260,+!p1@HOXD11!1.91!80.29!HOXD11;;chr1:209979467..209979494,-!p1@IRF6!1.87!81.79!IRF6;;chr3:189507432..189507459,+!p1@TP63!1.83!67.00!TP63;;chr11:34642612..34642646,+!p1@EHF!1.77!57.53!EHF;;chr5:2751785..2751808,-!p2@IRX2!1.70!49.44!IRX2;;chr6:126240380..126240430,+!p2@NCOA7!1.69!120.38!NCOA7;;chr2:176969179..176969226,+!p2@HOXD11!1.66!44.59!HOXD11;;chr6:126240442..126240459,+!p4@NCOA7!1.63!52.45!NCOA7;;chr6:10415484..10415508,-!p3@TFAP2A!1.63!42.05!TFAP2A;;chr8:10588010..10588030,-!p1@SOX7!1.59!38.24!SOX7;;chr10:48355030..48355090,+!p1@ZNF488!1.57!46.44!ZNF488;;chr15:83953397..83953425,-!p1@BNC1!1.56!40.32!BNC1;;chr8:102504651..102504683,+!p1@GRHL2!1.55!34.31!GRHL2;;chr1:209979411..209979433,-!p2@IRF6!1.55!34.08!IRF6;;chr12:52445218..52445237,+!p1@NR4A1!1.50!366.22!NR4A1;;chr6:10415276..10415341,-!p2@TFAP2A!1.45!33.39!TFAP2A;;chr17:80797886..80797906,-!p1@ZNF750!1.41!24.61!ZNF750;;chr2:46524897..46524911,+!p2@EPAS1!1.40!65.39!EPAS1;;chr6:126240463..126240489,+!p6@NCOA7!1.39!26.11!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.38!38.12!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!1.31!40.78!SOX15;;chr11:120107344..120107351,+!p1@POU2F3!1.30!22.76!POU2F3;;chr5:137801160..137801176,+!p1@EGR1!1.29!1795.27!EGR1;;chr5:134369905..134369972,-!p1@PITX1!1.29!28.30!PITX1;;chr11:65554528..65554546,+!p1@OVOL1!1.29!18.48!OVOL1;;chr13:73633131..73633149,+!p1@KLF5!1.28!188.42!KLF5;;chr5:137804484..137804498,+!p2@EGR1!1.26!67.58!EGR1;;chr8:22550982..22550999,-!p1@EGR3!1.25!46.79!EGR3;;chr1:212782094..212782109,+!p1@ATF3!1.24!438.65!ATF3;;chr6:10412392..10412409,-!p4@TFAP2A!1.20!17.10!TFAP2A;;chr5:172662197..172662216,-!p1@NKX2-5!1.20!15.02!NKX2-5;;chr19:45971246..45971265,+!p1@FOSB!1.19!265.13!FOSB;;chr21:36421535..36421610,-!p2@RUNX1!1.14!46.09!RUNX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.40!TFAP2C;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.83!ZNF385A;;chr11:65554563..65554576,+!p2@OVOL1!1.11!12.01!OVOL1;;chr12:80084737..80084763,-!p3@PAWR!1.09!42.40!PAWR;;chr14:37131058..37131139,+!p1@PAX9!1.09!11.21!PAX9;;chr15:67418119..67418162,+!p5@SMAD3!1.08!12.25!SMAD3;;chr7:27153454..27153469,-!p2@HOXA3!1.07!10.63!HOXA3;;chr17:7493405..7493419,-!p1@SOX15!1.06!10.40!SOX15;;chr20:50721803..50721857,-!p2@ZFP64!1.05!16.17!ZFP64;;chr3:193853927..193853944,+!p1@HES1!1.04!325.09!HES1;;chr14:75745523..75745537,+!p1@FOS!1.03!1183.79!FOS;;chr2:73520667..73520683,-!p1@EGR4!1.02!9.47!EGR4;;chr6:34204672..34204692,+!p1@HMGA1!0.97!971.92!HMGA1;;chr8:128748470..128748487,+!p1@MYC!0.97!949.62!MYC;;chr8:102504979..102505010,+!p2@GRHL2!0.96!8.20!GRHL2;;chr17:8027418..8027432,-!p1@HES7!0.96!8.09!HES7;;chr11:65667884..65667895,-!p2@FOSL1!0.95!31.65!FOSL1;;chr12:80084279..80084293,-!p8@PAWR!0.94!12.94!PAWR;;chr5:137804130..137804156,+!p5@EGR1!0.94!8.32!EGR1;;chr17:48072574..48072597,-!p1@DLX3!0.94!7.74!DLX3;;chr3:138665937..138665968,-!p1@FOXL2!0.93!7.51!FOXL2;;chr17:70117153..70117174,+!p1@SOX9!0.92!78.56!SOX9;;chr8:99956662..99956684,+!p1@OSR2!0.92!11.44!OSR2;;chr6:10412576..10412599,-!p5@TFAP2A!0.91!7.05!TFAP2A;;chr2:172967621..172967637,-!p1@DLX2!0.90!19.18!DLX2;;chr6:126240356..126240379,+!p7@NCOA7!0.90!8.66!NCOA7;;chr8:102504690..102504704,+!p3@GRHL2!0.90!6.93!GRHL2;;chr1:209979449..209979460,-!p3@IRF6!0.90!6.93!IRF6;;chr11:65667846..65667868,-!p1@FOSL1!0.89!186.11!FOSL1;;chr12:80084303..80084332,-!p1@PAWR!0.89!42.40!PAWR;;chr1:6479968..6479986,-!p1@HES2!0.89!6.82!HES2;;chr19:33793430..33793447,-!p1@CEBPA!0.88!28.88!CEBPA;;chr5:321810..321877,+!p1@AHRR!0.88!21.72!AHRR;;chr5:1887070..1887114,-!p1@IRX4!0.88!6.58!IRX4;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.58!TFAP2A;;chr5:137804357..137804390,+!p4@EGR1!0.87!7.62!EGR1;;chr12:54332608..54332636,+!p1@HOXC13!0.87!6.47!HOXC13;;chr22:19748231..19748317,+!p1@TBX1!0.87!6.35!TBX1;;chr2:176969124..176969155,+!p5@HOXD11!0.86!6.24!HOXD11;;chr13:41593425..41593480,-!p1@ELF1!0.85!40.90!ELF1;;chr5:134369879..134369898,-!p2@PITX1!0.85!6.01!PITX1;;chr8:128748308..128748324,+!p2@MYC!0.84!173.64!MYC;;chr19:45908292..45908374,-!p1@PPP1R13L!0.84!56.15!PPP1R13L;;chr2:46524878..46524891,+!p3@EPAS1!0.84!10.74!EPAS1;;chr5:137804405..137804444,+!p3@EGR1!0.84!7.28!EGR1;;chr3:138665969..138665993,-!p2@FOXL2!0.84!5.89!FOXL2;;chr15:83953373..83953386,-!p2@BNC1!0.84!5.89!BNC1;;chr6:1312325..1312340,+!p1@FOXQ1!0.83!9.70!FOXQ1;;chr6:126240542..126240553,+!p14@NCOA7!0.83!5.78!NCOA7;;chr6:10419768..10419819,-!p6@TFAP2A!0.82!5.66!TFAP2A;;chr6:1389789..1389821,+!p1@FOXF2!0.81!7.74!FOXF2;;chr6:10412477..10412490,-!p10@TFAP2A!0.81!5.43!TFAP2A;;chr15:67418047..67418093,+!p4@SMAD3!0.80!6.82!SMAD3;;chr12:54785054..54785072,-!p4@ZNF385A!0.80!6.12!ZNF385A;;chr1:59249688..59249703,-!p3@JUN!0.79!33.62!JUN;;chr12:53625966..53626012,-!p2@RARG!0.79!14.67!RARG;;chr17:41622925..41622976,-!p3@ETV4!0.78!7.86!ETV4;;chr6:34210478..34210481,+!p8@HMGA1!0.78!5.08!HMGA1;;chr6:34204642..34204664,+!p2@HMGA1!0.77!730.58!HMGA1;;chr12:2986275..2986363,-!p1@FOXM1!0.77!53.72!FOXM1;;chr1:59249707..59249727,-!p1@JUN!0.76!221.35!JUN;;chr17:41277372..41277418,-!p1@BRCA1!0.76!18.83!BRCA1;;chr19:48774586..48774670,+!p1@ZNF114!0.76!6.12!ZNF114;;chr7:27190547..27190591,-!p1@HOXA6!0.76!4.74!HOXA6;;chr12:66218836..66218888,+!p1@HMGA2!0.75!47.71!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.75!15.83!GATA6;;chr1:935398..935465,-!p2@HES4!0.75!10.17!HES4;;chr14:38064429..38064486,-!p1@FOXA1!0.75!4.62!FOXA1;;chr6:126240490..126240501,+!p11@NCOA7!0.73!4.39!NCOA7;;chr2:176969097..176969109,+!p3@HOXD11!0.73!4.39!HOXD11;;chr15:67357924..67357952,+!p2@SMAD3!0.72!31.65!SMAD3;;chr1:59249645..59249656,-!p4@JUN!0.72!11.55!JUN;;chr11:34642656..34642667,+!p2@EHF!0.72!4.27!EHF;;chr1:158979792..158979814,+!p2@IFI16!0.71!44.94!IFI16;;chr3:128206762..128206781,-!p2@GATA2!0.71!28.88!GATA2;;chr12:80084167..80084197,-!p5@PAWR!0.71!10.63!PAWR;;chr9:102584262..102584276,+!p1@NR4A3!0.71!10.05!NR4A3;;chr12:54332652..54332671,+!p2@HOXC13!0.71!4.16!HOXC13;;chr13:100634130..100634143,+!p3@ZIC2!0.71!4.16!ZIC2;;chr8:128750654..128750793,+!p3@MYC!0.70!17.91!MYC;;chr12:80084862..80084884,-!p7@PAWR!0.70!9.24!PAWR;;chr14:75746722..75746777,+!p2@FOS!0.70!5.31!FOS;;chr1:158969752..158969780,+!p6@IFI16!0.69!7.28!IFI16;;chr1:209979375..209979386,-!p4@IRF6!0.69!3.93!IRF6;;chr9:109625401..109625458,+!p1@ZNF462!0.68!10.97!ZNF462;;chr9:100615499..100615519,+!p1@FOXE1!0.67!3.70!FOXE1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.67!3.70!LHX1;;chr9:14314131..14314147,-!p2@NFIB!0.66!22.87!NFIB;;chr20:18038521..18038571,-!p1@OVOL2!0.66!3.58!OVOL2;;chr13:100623375..100623425,-!p1@ZIC5!0.66!3.58!ZIC5;;chr5:1887052..1887065,-!p2@IRX4!0.66!3.58!IRX4;;chr6:10415263..10415274,-!p8@TFAP2A!0.66!3.58!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!0.65!18.48!HMGA2;;chr17:41622765..41622821,-!p2@ETV4!0.65!5.66!ETV4;;chr20:50179368..50179392,-!p2@NFATC2!0.65!4.74!NFATC2;;chr20:22565370..22565388,-!p2@FOXA2!0.65!3.47!FOXA2;;chr17:41622731..41622764,-!p5@ETV4!0.65!3.47!ETV4;;chr20:42295713..42295738,+!p2@MYBL2!0.64!22.99!MYBL2;;chr14:37051798..37051831,-!p1@NKX2-8!0.64!3.35!NKX2-8;;chr14:61191018..61191048,-!p1@SIX4!0.63!7.86!SIX4;;chr13:100634004..100634025,+!p2@ZIC2!0.63!3.23!ZIC2;;chr21:38071430..38071456,+!p1@SIM2!0.63!3.23!SIM2;;chr10:64576105..64576133,-!p1@EGR2!0.62!7.16!EGR2;;chr15:96869114..96869160,+!p11@NR2F2!0.62!4.62!NR2F2;;chr12:48298785..48298828,-!p1@VDR!0.61!19.29!VDR;;chr12:54332687..54332701,+!p3@HOXC13!0.61!3.12!HOXC13;;chr15:67418177..67418204,+!p9@SMAD3!0.61!3.12!SMAD3;;chr1:205600919..205600982,-!p3@ELK4!0.60!12.94!ELK4;;chr1:200379104..200379128,-!p2@ZNF281!0.60!8.32!ZNF281;;chr15:96869255..96869291,+!p6@NR2F2!0.60!6.01!NR2F2;;chr17:41622834..41622883,-!p6@ETV4!0.60!3.81!ETV4;;chr5:137800912..137800941,+!p7@EGR1!0.60!3.00!EGR1;;chr5:172662230..172662241,-!p3@NKX2-5!0.60!3.00!NKX2-5;;chr7:28448965..28448994,+!p2@CREB5!0.59!12.01!CREB5;;chr8:128747661..128747703,+!p6@MYC!0.59!4.16!MYC;;chr2:177016535..177016548,+!p3@HOXD4!0.59!2.89!HOXD4;;chr3:189507460..189507471,+!p3@TP63!0.59!2.89!TP63;;chr17:80797863..80797874,-!p2@ZNF750!0.59!2.89!ZNF750;;chr20:49547691..49547724,-!p2@ADNP!0.58!21.14!ADNP;;chr17:41623692..41623715,-!p1@ETV4!0.58!14.44!ETV4;;chr8:57123815..57123867,-!p1@PLAG1!0.58!13.63!PLAG1;;chr2:85981222..85981259,+!p2@ATOH8!0.58!5.08!ATOH8;;chr3:168864315..168864339,-!p2@MECOM!0.58!5.08!MECOM;;chr8:67525443..67525459,-!p2@MYBL1!0.58!4.51!MYBL1;;chr13:73636252..73636307,+!p2@KLF5!0.58!3.35!KLF5;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.58!2.77!HOXC5;;chr8:102504932..102504952,+!p4@GRHL2!0.58!2.77!GRHL2;;chr9:96717629..96717644,-!p1@BARX1!0.58!2.77!BARX1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.58!2.77!TFCP2L1;;chr1:158979872..158979898,+!p3@IFI16!0.57!9.94!IFI16;;chr9:102584159..102584174,+!p2@NR4A3!0.57!5.43!NR4A3;;chr17:41623009..41623053,-!p4@ETV4!0.57!4.85!ETV4;;chr6:135502501..135502546,+!p1@MYB!0.57!3.47!MYB;;chr9:14083467..14083483,-!p4@NFIB!0.56!7.51!NFIB;;chr21:38071403..38071428,+!p2@SIM2!0.56!2.66!SIM2;;chr2:172949484..172949522,+!p1@DLX1!0.56!2.66!DLX1;;chr3:189507523..189507535,+!p5@TP63!0.56!2.66!TP63;;chr9:14314566..14314618,-!p1@NFIB!0.55!38.12!NFIB;;chr7:64838786..64838809,+!p2@ZNF92!0.55!18.02!ZNF92;;chr2:208394817..208394834,+!p3@CREB1!0.55!12.48!CREB1;;chr8:102217679..102217719,-!p2@ZNF706!0.55!10.74!ZNF706;;chr12:80083722..80083766,-!p12@PAWR!0.55!3.81!PAWR;;chr3:128207349..128207386,-!p3@GATA2!0.55!2.54!GATA2;;chr6:42419043..42419087,-!p2@TRERF1!0.54!5.55!TRERF1;;chr18:19749517..19749531,+!p3@GATA6!0.54!4.97!GATA6;;chr7:4721885..4721945,+!p1@FOXK1!0.53!92.54!FOXK1;;chr8:49833978..49833996,-!p1@SNAI2!0.53!63.19!SNAI2;;chr12:80084768..80084821,-!p2@PAWR!0.53!20.68!PAWR;;chr7:99156434..99156510,+!p2@ZNF655!0.53!18.02!ZNF655;;chr6:20402102..20402152,+!p1@E2F3!0.53!12.25!E2F3;;chr8:48650982..48651023,-!p3@CEBPD!0.53!7.05!CEBPD;;chr14:61191049..61191080,-!p2@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+|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0008814,UBERON:0010056,UBERON:0010316
 |fonse_cell_line=FF:0100786,FF:0101120,FF:0102027
 |fonse_cell_line_closure=FF:0100786,FF:0101120,FF:0102027

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FF:10544-107H4: Difference between revisions

From FANTOM5_SSTAR

Revision as of 19:18, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0