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MCL coexpression mm9:88: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000344!3.23e-45!15;UBERON:0000160!4.91e-45!31;UBERON:0001242!7.03e-40!13;UBERON:0000060!7.03e-40!13;UBERON:0001262!7.03e-40!13;UBERON:0004786!7.03e-40!13;UBERON:0005409!6.32e-31!47;UBERON:0003350!1.60e-28!9;UBERON:0004808!1.60e-28!9;UBERON:0001277!1.60e-28!9;UBERON:0004923!4.26e-27!24;UBERON:0000485!4.75e-23!11;UBERON:0002108!2.51e-12!4;UBERON:0001007!3.97e-12!116;UBERON:0001555!3.97e-12!116;UBERON:0007026!3.97e-12!116;UBERON:0004119!7.70e-12!118;UBERON:0000925!7.70e-12!118;UBERON:0006595!7.70e-12!118;UBERON:0004921!4.57e-10!114;UBERON:0000331!1.03e-09!3;UBERON:0002116!1.03e-09!3;UBERON:0001204!1.03e-09!3;UBERON:0001168!1.03e-09!3;UBERON:0001962!9.23e-07!2;UBERON:0001961!9.23e-07!2;UBERON:0001744!9.23e-07!2
|ontology_enrichment_uberon=UBERON:0000344!3.23e-45!15;UBERON:0000160!4.91e-45!31;UBERON:0001242!7.03e-40!13;UBERON:0000060!7.03e-40!13;UBERON:0001262!7.03e-40!13;UBERON:0004786!7.03e-40!13;UBERON:0005409!6.32e-31!47;UBERON:0003350!1.60e-28!9;UBERON:0004808!1.60e-28!9;UBERON:0001277!1.60e-28!9;UBERON:0004923!4.26e-27!24;UBERON:0000485!4.75e-23!11;UBERON:0002108!2.51e-12!4;UBERON:0001007!3.97e-12!116;UBERON:0001555!3.97e-12!116;UBERON:0007026!3.97e-12!116;UBERON:0004119!7.70e-12!118;UBERON:0000925!7.70e-12!118;UBERON:0006595!7.70e-12!118;UBERON:0004921!4.57e-10!114;UBERON:0000331!1.03e-09!3;UBERON:0002116!1.03e-09!3;UBERON:0001204!1.03e-09!3;UBERON:0001168!1.03e-09!3;UBERON:0001962!9.23e-07!2;UBERON:0001961!9.23e-07!2;UBERON:0001744!9.23e-07!2
|tfbs_overrepresentation_for_novel_motifs=0.14656,0.583069,0.103857,0.353123,0.331513,0.169214,0.377957,0.0295461,0.913765,0.635445,0.578407,0.345179,0.108662,0.602339,0.309045,0,0.316017,0.0616522,1.05566,0.649599,0.101553,0.826303,0.2601,0.166567,0.398571,0.0960481,0.457534,1.3819,0.731995,1.30905,0.425338,0.278296,0.0946059,0.950989,1.22181,0.406446,0.0478302,0.49979,1.73824,0.799572,0.159703,0.302411,0.471059,0.157923,0.19378,0.126823,0.550231,0.373762,0.242976,0.595692,0.140362,0.232952,0.244559,0.0655344,0.911557,0.277009,0.189516,0.312073,0.820765,0.427904,0.251561,0.411744,1.23488,0.267768,0.301319,1.19239,0.129285,0.348608,0.0996016,0.686926,0.558676,0.173741,0.850017,0.285508,0.515099,0.204047,0.388672,0.516708,0.22973,0.636705,0.401994,0.347115,0.24696,0.0617557,0.1744,0.182331,0.20856,0.291298,0.0919022,1.1976,0.165532,0.178633,0.544654,0.127413,2.3979,0.217891,0.53075,0.126425,0.550994,0.581652,0.247917,0.115418,0.472248,0.287198,0.488965,0.190847,0.203083,0.234049,1.04217,0.981324,0.600214,0.218072,0.174394,0.42179,0.169433,0.522493,1.77672,0.516175,0.158841,0.012688,0.0862049,0.111646,0.0976928,0.176162,0.200763,0.0942329,0.586691,0.2866,0.128545,0.77466,0.200668,0.330014,1.77388,0.475606,0.535723,0.206282,0.0954905,0.306272,0.913831,1.8738,0.449867,0.411323,0.0455655,0.292796,0.726267,0.0563103,0.0905905,0.762213,0.0985101,0.573169,0.243603,0.221545,0.505845,1.11057,0.0893258,0.0971804,0.0525137,0.771087,0.624412,0.369157,0.159521,0.392134,0.445862,0.207972,0.130818,0.449967,1.18832,0.50694,0.539236
}}
}}

Revision as of 17:46, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:120912861..120912876,-p@chr10:120912861..120912876
-
Mm9::chr10:80565428..80565433,+p@chr10:80565428..80565433
+
Mm9::chr10:93498194..93498216,+p@chr10:93498194..93498216
+
Mm9::chr11:101536779..101536810,-p@chr11:101536779..101536810
-
Mm9::chr11:102977542..102977549,+p1@Hexim1
Mm9::chr11:115024443..115024449,-p@chr11:115024443..115024449
-
Mm9::chr11:116153789..116153790,-p@chr11:116153789..116153790
-
Mm9::chr11:118914704..118914715,-p@chr11:118914704..118914715
-
Mm9::chr11:118914747..118914751,-p@chr11:118914747..118914751
-
Mm9::chr11:118988052..118988058,+p@chr11:118988052..118988058
+
Mm9::chr11:120478620..120478628,+p@chr11:120478620..120478628
+
Mm9::chr11:58424979..58425002,-p@chr11:58424979..58425002
-
Mm9::chr11:69224899..69224914,+p@chr11:69224899..69224914
+
Mm9::chr11:75386314..75386326,+p@chr11:75386314..75386326
+
Mm9::chr11:84641148..84641158,-p@chr11:84641148..84641158
-
Mm9::chr12:111673239..111673245,-p@chr12:111673239..111673245
-
Mm9::chr12:111682896..111682907,+p@chr12:111682896..111682907
+
Mm9::chr12:111682926..111682958,+p@chr12:111682926..111682958
+
Mm9::chr12:112229809..112229811,+p@chr12:112229809..112229811
+
Mm9::chr12:40668168..40668171,+p@chr12:40668168..40668171
+
Mm9::chr12:70825974..70825991,+p2@Atp5s
Mm9::chr12:78083810..78083813,-p@chr12:78083810..78083813
-
Mm9::chr12:79850576..79850587,-p@chr12:79850576..79850587
-
Mm9::chr12:92934820..92934824,-p@chr12:92934820..92934824
-
Mm9::chr13:101346246..101346253,+p@chr13:101346246..101346253
+
Mm9::chr13:24923530..24923556,+p1@Tdp2
Mm9::chr13:24971734..24971739,+p@chr13:24971734..24971739
+
Mm9::chr13:55480530..55480540,+p5@Rgs14
Mm9::chr13:73870499..73870551,+p2@Slc12a7
Mm9::chr14:22569835..22569846,+p4@Samd8
Mm9::chr14:26286217..26286232,+p@chr14:26286217..26286232
+
Mm9::chr14:35487182..35487200,+p7@Wapal
Mm9::chr14:73507116..73507118,+p@chr14:73507116..73507118
+
Mm9::chr15:103135874..103135880,+p@chr15:103135874..103135880
+
Mm9::chr15:76528391..76528422,-p@chr15:76528391..76528422
-
Mm9::chr15:78729838..78729852,+p4@Sh3bp1
Mm9::chr15:82182200..82182204,+p@chr15:82182200..82182204
+
Mm9::chr15:83305098..83305104,+p@chr15:83305098..83305104
+
Mm9::chr15:84503292..84503296,+p@chr15:84503292..84503296
+
Mm9::chr15:85059289..85059303,+p@chr15:85059289..85059303
+
Mm9::chr15:85502239..85502246,+p@chr15:85502239..85502246
+
Mm9::chr15:85502255..85502267,+p@chr15:85502255..85502267
+
Mm9::chr15:89207489..89207533,-p1@Tymp
Mm9::chr16:17759257..17759264,+p7@Klhl22
Mm9::chr16:78268076..78268083,-p@chr16:78268076..78268083
-
Mm9::chr17:34509216..34509223,+p@chr17:34509216..34509223
+
Mm9::chr17:36266450..36266453,-p2@Gm7030
Mm9::chr17:36282872..36282883,-p2@ENSMUST00000174094
Mm9::chr17:36282884..36282901,-p1@ENSMUST00000174094
Mm9::chr17:56148728..56148743,+p2@Mpnd
Mm9::chr17:74801997..74802007,-p@chr17:74801997..74802007
-
Mm9::chr17:78816982..78816986,-p@chr17:78816982..78816986
-
Mm9::chr17:80318241..80318260,+p@chr17:80318241..80318260
+
Mm9::chr17:8476480..8476499,-p@chr17:8476480..8476499
-
Mm9::chr17:85293136..85293172,+p@chr17:85293136..85293172
+
Mm9::chr18:11052342..11052356,-p@chr18:11052342..11052356
-
Mm9::chr18:32194830..32194834,-p@chr18:32194830..32194834
-
Mm9::chr18:36838912..36838933,-p4@Apbb3
Mm9::chr18:66631168..66631175,-p@chr18:66631168..66631175
-
Mm9::chr18:66635277..66635296,+p@chr18:66635277..66635296
+
Mm9::chr18:75457242..75457248,+p@chr18:75457242..75457248
+
Mm9::chr18:78118270..78118280,+p@chr18:78118270..78118280
+
Mm9::chr19:11893526..11893532,+p@chr19:11893526..11893532
+
Mm9::chr19:12085013..12085024,+p@chr19:12085013..12085024
+
Mm9::chr19:42826949..42827007,-p1@Pyroxd2
Mm9::chr19:42827200..42827211,-p3@Pyroxd2
Mm9::chr19:55942681..55942684,+p@chr19:55942681..55942684
+
Mm9::chr19:6264408..6264418,-p@chr19:6264408..6264418
-
Mm9::chr1:13659869..13659873,-p@chr1:13659869..13659873
-
Mm9::chr1:156931282..156931291,-p@chr1:156931282..156931291
-
Mm9::chr1:166388648..166388661,+p@chr1:166388648..166388661
+
Mm9::chr1:166388667..166388678,+p@chr1:166388667..166388678
+
Mm9::chr1:174412343..174412362,+p1@Igsf9
Mm9::chr1:192735744..192735752,+p@chr1:192735744..192735752
+
Mm9::chr1:194639232..194639234,+p@chr1:194639232..194639234
+
Mm9::chr1:82823582..82823586,-p@chr1:82823582..82823586
-
Mm9::chr2:164257708..164257721,-p@chr2:164257708..164257721
-
Mm9::chr2:24234641..24234644,+p@chr2:24234641..24234644
+
Mm9::chr2:31008686..31008692,-p@chr2:31008686..31008692
-
Mm9::chr2:33323607..33323635,+p@chr2:33323607..33323635
+
Mm9::chr2:75543070..75543079,-p7@Nfe2l2
Mm9::chr2:76337146..76337155,+p5@Osbpl6
Mm9::chr3:101330969..101330979,+p@chr3:101330969..101330979
+
Mm9::chr3:104598813..104598825,+p@chr3:104598813..104598825
+
Mm9::chr3:122122784..122122790,+p5@Bcar3
Mm9::chr3:122122903..122122918,+p1@Bcar3
Mm9::chr3:35620179..35620188,+p@chr3:35620179..35620188
+
Mm9::chr3:88940530..88940551,+p2@Pklr
Mm9::chr3:89197781..89197786,+p3@Gm15417
Mm9::chr3:94591575..94591586,+p@chr3:94591575..94591586
+
Mm9::chr4:106403563..106403580,-p2@Heatr8
Mm9::chr4:119211745..119211756,+p@chr4:119211745..119211756
+
Mm9::chr4:128908952..128908957,+p@chr4:128908952..128908957
+
Mm9::chr4:133092684..133092699,-p@chr4:133092684..133092699
-
Mm9::chr4:133369317..133369320,+p@chr4:133369317..133369320
+
Mm9::chr4:141179191..141179200,+p@chr4:141179191..141179200
+
Mm9::chr4:149283679..149283684,-p9@Spsb1
Mm9::chr4:149283692..149283721,-p3@Spsb1
Mm9::chr4:155029114..155029133,-p@chr4:155029114..155029133
-
Mm9::chr4:49562541..49562577,+p@chr4:49562541..49562577
+
Mm9::chr4:62163210..62163216,-p3@Hdhd3
Mm9::chr5:120120847..120120853,-p@chr5:120120847..120120853
-
Mm9::chr5:125638808..125638814,+p@chr5:125638808..125638814
+
Mm9::chr5:135442349..135442362,-p@chr5:135442349..135442362
-
Mm9::chr5:136252496..136252506,+p@chr5:136252496..136252506
+
Mm9::chr5:143579562..143579565,+p@chr5:143579562..143579565
+
Mm9::chr5:143580673..143580682,+p@chr5:143580673..143580682
+
Mm9::chr5:31252294..31252314,-p@chr5:31252294..31252314
-
Mm9::chr5:32498331..32498334,-p@chr5:32498331..32498334
-
Mm9::chr5:64219055..64219063,-p@chr5:64219055..64219063
-
Mm9::chr5:66443992..66444014,-p@chr5:66443992..66444014
-
Mm9::chr5:66444364..66444375,+p@chr5:66444364..66444375
+
Mm9::chr5:66444377..66444388,+p@chr5:66444377..66444388
+
Mm9::chr6:124865590..124865633,-p3@Ptms
Mm9::chr6:137486449..137486455,+p@chr6:137486449..137486455
+
Mm9::chr6:28376294..28376320,+p@chr6:28376294..28376320
+
Mm9::chr6:50406084..50406173,-p1@Osbpl3
Mm9::chr6:53989882..53989886,-p@chr6:53989882..53989886
-
Mm9::chr7:116744296..116744298,-p@chr7:116744296..116744298
-
Mm9::chr7:120350606..120350625,-p@chr7:120350606..120350625
-
Mm9::chr7:125850861..125850866,-p@chr7:125850861..125850866
-
Mm9::chr7:17001020..17001024,+p@chr7:17001020..17001024
+
Mm9::chr7:20382267..20382282,+p@chr7:20382267..20382282
+
Mm9::chr7:26179306..26179326,+p4@4732471J01Rik
Mm9::chr7:29940690..29940710,+p2@ENSMUST00000053062
Mm9::chr7:65713901..65713906,+p@chr7:65713901..65713906
+
Mm9::chr7:96869911..96869915,+p@chr7:96869911..96869915
+
Mm9::chr8:107365938..107365944,+p@chr8:107365938..107365944
+
Mm9::chr8:117710565..117710568,+p@chr8:117710565..117710568
+
Mm9::chr8:118231881..118231887,+p@chr8:118231881..118231887
+
Mm9::chr8:122335239..122335244,+p@chr8:122335239..122335244
+
Mm9::chr8:125098705..125098710,+p@chr8:125098705..125098710
+
Mm9::chr8:41597143..41597216,+p1@Vps37a
Mm9::chr8:79425908..79425922,-p@chr8:79425908..79425922
-
Mm9::chr8:97726675..97726685,-p@chr8:97726675..97726685
-
Mm9::chr9:121207864..121207875,+p@chr9:121207864..121207875
+
Mm9::chr9:121207894..121207918,+p@chr9:121207894..121207918
+
Mm9::chr9:121551844..121551875,+p2@Vipr1
Mm9::chr9:121551886..121551901,+p1@Vipr1
Mm9::chr9:51123998..51124004,+p@chr9:51123998..51124004
+
Mm9::chr9:53619482..53619494,+p5@Slc35f2
Mm9::chr9:7872951..7872976,+p@chr9:7872951..7872976
+
Mm9::chr9:95715941..95715947,+p@chr9:95715941..95715947
+
Mm9::chrX:39502204..39502218,-p@chrX:39502204..39502218
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
mucosa3.23e-4515
intestine4.91e-4531
intestinal mucosa7.03e-4013
anatomical wall7.03e-4013
wall of intestine7.03e-4013
gastrointestinal system mucosa7.03e-4013
gastrointestinal system6.32e-3147
epithelium of mucosa1.60e-289
gastrointestinal system epithelium1.60e-289
intestinal epithelium1.60e-289
organ component layer4.26e-2724
simple columnar epithelium4.75e-2311
small intestine2.51e-124
digestive system3.97e-12116
digestive tract3.97e-12116
primitive gut3.97e-12116
endoderm-derived structure7.70e-12118
endoderm7.70e-12118
presumptive endoderm7.70e-12118
subdivision of digestive tract4.57e-10114
ileal mucosa1.03e-093
ileum1.03e-093
mucosa of small intestine1.03e-093
wall of small intestine1.03e-093
gut-associated lymphoid tissue9.23e-072
mucosa-associated lymphoid tissue9.23e-072
lymphoid tissue9.23e-072


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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