FFCP PHASE1:Hg19::chr11:70963538..70963630,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22941|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14295|TSSclassifier=S|UniProt=C9JFP8|association_with_transcript=0bp_to_ENST00000413503_5end|coexpression_cluster_id=C3198|description=CAGE_peak_1_at_SHANK2_5end|id=chr11:70963538..70963630,-|ontology_enrichment_celltype=CL:0000223!6.77e-17!59;CL:0000066!1.38e-15!254;CL:0002076!4.76e-14!43;CL:0002368!9.89e-07!13|ontology_enrichment_celltype_v019=CL:0002076;4.90e-15;42!CL:0002368;3.76e-09;13!CL:0002251;1.29e-08;20!CL:1000497;3.24e-08;17!CL:0002518;3.24e-08;17!CL:1000507;1.02e-07;10!CL:1000494;1.02e-07;10|ontology_enrichment_celltype_v019_2=CL:0000223,4.39e-23,58;CL:0000066,1.60e-21,253;CL:0002076,9.51e-19,42;CL:0002368,3.67e-09,13;CL:0002251,1.69e-08,20;CL:1000497,3.44e-08,17;CL:0002518,3.44e-08,17;CL:1000507,1.13e-07,10;CL:1000494,1.13e-07,10|ontology_enrichment_development_v019=CL:0000223;4.61e-13;58!UBERON:0001041;5.62e-10;30!UBERON:0009497;1.49e-08;13!UBERON:0006595;1.28e-07;86!UBERON:0004161;7.29e-07;11|ontology_enrichment_disease=DOID:305!9.79e-11!106;DOID:0050687!8.87e-10!143;DOID:299!1.59e-08!25|ontology_enrichment_disease_v019=DOID:299;3.80e-09;25|ontology_enrichment_disease_v019_2=DOID:305,2.73e-14,106;DOID:0050687,2.84e-13,143;DOID:299,3.78e-09,25|ontology_enrichment_uberon=UBERON:0004119!6.47e-27!169;UBERON:0000925!6.47e-27!169;UBERON:0006595!6.47e-27!169;UBERON:0001007!3.93e-22!155;UBERON:0001555!3.93e-22!155;UBERON:0007026!3.93e-22!155;UBERON:0000466!1.82e-18!126;UBERON:0004921!1.42e-17!129;UBERON:0004185!1.42e-17!129;UBERON:0005177!6.25e-16!107;UBERON:0000077!2.07e-15!130;UBERON:0000481!2.26e-15!347;UBERON:0005911!1.10e-13!82;UBERON:0000464!1.11e-13!104;UBERON:0009569!1.04e-12!113;UBERON:0002100!3.69e-12!216;UBERON:0003104!1.19e-11!238;UBERON:0009142!1.19e-11!238;UBERON:0000475!1.06e-10!365;UBERON:0001008!3.97e-10!45;UBERON:0001041!7.11e-10!98;UBERON:0000062!7.99e-10!511;UBERON:0006554!8.81e-10!44;UBERON:0000468!1.93e-08!659;UBERON:0000160!2.38e-08!27;UBERON:0005172!2.42e-08!55;UBERON:0005173!2.42e-08!55;UBERON:0000922!2.64e-08!612;UBERON:0003929!4.56e-08!54;UBERON:0005409!4.66e-08!35;UBERON:0001048!6.51e-08!168;UBERON:0002553!7.58e-08!70;UBERON:0000161!1.07e-07!35;UBERON:0002365!2.12e-07!31;UBERON:0002330!2.12e-07!31;UBERON:0005153!3.92e-07!37;UBERON:0001004!4.01e-07!72;UBERON:0005178!4.38e-07!34;UBERON:0002224!4.38e-07!34;UBERON:0002417!5.00e-07!61;UBERON:0000916!5.00e-07!61;UBERON:0002530!5.11e-07!59;UBERON:0009497!6.02e-07!25;UBERON:0000015!6.02e-07!25;UBERON:0002423!6.02e-07!25;UBERON:0006235!6.02e-07!25;UBERON:0004161!6.02e-07!25;UBERON:0000165!6.70e-07!28;UBERON:0000930!6.70e-07!28|ontology_enrichment_uberon_v019=UBERON:0004921;1.88e-11;33!UBERON:0002423;9.36e-10;25!UBERON:0006554;2.10e-09;30!UBERON:0001008;2.10e-09;30!UBERON:0001007;1.37e-08;81!UBERON:0002365;1.43e-08;31!UBERON:0002330;1.43e-08;31!UBERON:0005409;1.86e-08;22!UBERON:0004211;1.02e-07;10!UBERON:0009773;1.02e-07;10!UBERON:0001231;1.02e-07;10!UBERON:0004810;1.02e-07;10!UBERON:0001555;1.11e-07;54!UBERON:0000160;2.10e-07;17!UBERON:0005172;3.11e-07;52!UBERON:0005173;3.11e-07;52!UBERON:0005178;3.88e-07;34!UBERON:0002224;3.88e-07;34!UBERON:0002113;7.31e-07;24!UBERON:0011143;7.31e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.48e-28,160;UBERON:0000925,2.48e-28,160;UBERON:0006595,2.48e-28,160;UBERON:0001007,1.78e-24,145;UBERON:0001555,1.78e-24,145;UBERON:0007026,1.78e-24,145;UBERON:0004921,7.27e-22,118;UBERON:0005177,8.10e-19,101;UBERON:0005911,2.88e-18,82;UBERON:0009569,1.27e-15,112;UBERON:0001041,7.33e-14,87;UBERON:0001008,7.65e-12,48;UBERON:0006554,2.21e-11,47;UBERON:0005172,2.34e-11,54;UBERON:0005173,2.34e-11,54;UBERON:0003929,3.65e-11,54;UBERON:0009497,9.47e-10,25;UBERON:0000015,9.47e-10,25;UBERON:0002423,9.47e-10,25;UBERON:0006235,9.47e-10,25;UBERON:0004161,9.47e-10,25;UBERON:0001004,1.29e-09,74;UBERON:0011216,2.16e-09,223;UBERON:0002100,2.48e-09,199;UBERON:0009856,2.81e-09,26;UBERON:0002417,3.36e-09,60;UBERON:0000916,3.36e-09,60;UBERON:0009854,8.74e-09,23;UBERON:0002365,1.05e-08,31;UBERON:0002330,1.05e-08,31;UBERON:0007499,1.05e-08,25;UBERON:0000161,3.18e-08,36;UBERON:0008835,3.32e-08,22;UBERON:0003894,3.32e-08,22;UBERON:0002113,4.37e-08,26;UBERON:0003918,4.37e-08,26;UBERON:0011143,4.37e-08,26;UBERON:0005095,4.37e-08,26;UBERON:0007687,4.37e-08,26;UBERON:0005178,5.08e-08,34;UBERON:0002224,5.08e-08,34;UBERON:0002530,8.02e-08,59;UBERON:0004810,1.13e-07,10;UBERON:0005181,1.30e-07,35;UBERON:0005153,2.06e-07,37;UBERON:0000160,2.14e-07,17;UBERON:0000489,2.20e-07,31;UBERON:0000915,3.04e-07,52;UBERON:0006555,4.78e-07,16;UBERON:0004819,4.78e-07,16;UBERON:0005409,6.48e-07,25|phase1_expression=0.363356758541113,0.428201047781966,0,0,0,0.872338524100369,0,0,0,3.44027511102112,16.0494268633658,0.873765488520689,0.791300934685361,0.495065411840187,2.65117900582333,0,0,0,0,0.369363174230364,3.26401105990805,0.313454721478088,0,0,0,0.229240217243854,0.164201178899891,0.157421562627358,0,0,0,6.43594857135249,8.73497164456925,5.17655614233503,3.09868802321207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0.587237189370939,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0.50133791063589,0.144846518960824,0,0,0,0,0,7.72776545436505,2.91436230634034,3.70784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23312862571041,0,0.25326102332916,0.132409180813219,0.573673241497627,0,1.12135520028461,0,0,0.933633106199299,0.134710672069688,0.817309515567294,0.454072282934794,0,0.234321431833797,0,0,0.298897361103602,0,0,0,1.63323337003915,1.59684612505298,0.309977343527296,0,0,0,0.718618141816238,0.505008341862199,1.25118519871964,1.10825646193673,0.877955241761676,0.30648779579902,0.751190294532984,0,0,0,0,0,0,1.03056216018252,0.37223371266318,0.168776332241266,0,0,0,0,0,0,0,3.47869535693934,3.00020732649918,2.00763216772303,16.3444766213658,13.38550660047,8.36596388660532,6.42698541095297,6.30802127189071,13.5041622858057,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.1536580090211,16.7080626835196,24.2223861739376,0,31.2390633899508,0,2.96325770603289,0,0.502644862058154,1.29623823221941,0,0,0,0,0.117408694235822,0,0,0,13.4334747653077,12.0188062693282,0,0,0,0.93733833986777,1.51183915378974,1.55952606966625,0.0895585227028483,0.871901815541886,0.766765358330422,0,0.088048434013226,0,0.720599767084807,0.25248486685276,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0.258543431515556,0,0,0,0,1.28603687131071,0,0.799266537048298,0.857867961948885,0,0,0.65147236858747,1.06617584622764,0,0.301439377059586,0,0.399891964728228,0,0,0,0,0,0,0.579125226670317,1.02738161275192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0.271265023699736,0.623912584592421,4.10386674233472,3.46945313074656,2.45996971484698,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.606255142892519,0,0.30239029332968,0,0,0,0.384417447767103,0,0.482561763430822,0,0,0,0.164254312027618,0,0.464841513839837,24.7761871662826,8.42127175273796,6.53775021444864,0.803701137152247,0,0,7.21919380651859,3.00359814707218,2.35304930753057,4.38417673959782,2.42768746453614,0,0,0.647747748306418,1.54227252690289,8.12839312631558,6.02027728625824,9.43042210266642,4.98645605357235,4.92524460388792,0,0,0.256450125116389,0.984043937099117,0.976135183992909,19.2686691781241,0,0,1.72279661398852,1.30012049207304,0,0.386682873168488,0,0,0.275673144969061,0,0,0.170453254832202,0.534192213880424,4.79326254546837,9.80169343562041,26.1606060613897,6.67641353646629,0,0.94443704049192,0,0,1.06461206063404,0,0.18532421910392,0,0,0.949138274156178,0.190630193923825,0.767693373934002,0,0,0.78494864019923,0.539617372749944,0.274537029736055,0.942499218765491,0.202182481573316,3.17020642346017,0.842516912477962,0.48763373908959,0.243713489631284,4.22600587027022,0.272999822815972,0,0,0.551365343546124,0,0,0.578775534266688,0,0,0,0,0.143411352204052,0.0982490410131212,0,0.354761064070598,0.211107635297664,0.329294892959902,0,1.74967360122491,4.04132873447151,8.04362730642945,9.80018863751903,19.3936229600165,11.193139689452,13.47771805341,13.7463347596369,5.51336160496703,0,0,0,0,0,0,0,0,0,0,6.61608583148786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05854594449042,0.293016358543788,0,0,0,4.53614521001611,0.593929361665277,3.37876772309155,0,0.281338832821026,0,0,0,4.78195171802567,5.24939439509181,0,0,0,0.933118762985422,8.7172300612907,15.9328845461292,0,1.7755813014648,0,2.22273980289274,0.969332746095218,0.185536196323703,0,14.0630990986026,37.520339998368,3.62499787717397,10.696584138837,5.33932665614809,0.236387681767936,7.23961083807076,0,0,0,0.361789315876224,0,1.10579259931225,2.06883333267483,0.87754158861589,1.74301541630384,5.99522100397994,1.07730361905316,0,8.53086446235823,6.64206568632314,5.21507385225639,3.82801391678303,2.83952539545773,5.33034776018635,0,0,0,0,0,0,0,0,10.7609012909294,11.099830954822,20.2134892150535,0,14.9289289661776,5.57282656371037,12.2206028986725,0,0,0,0.943615861729479,0,1.1713222286267,0,5.6742739490306,0,7.89168805698781,27.8278646911927,0,0.252746318513952,0,0.207376382794494,1.99396161812156,0,0.627865836814451,2.38944859545918,3.13070500632772,0,1.56203764501618,3.33174151208884,0,4.19344003780872,2.23581842213102,0,0,0,1.06687918137261,0,2.25980740780532,0,0,0,3.12882212375685,2.72539988855215,6.19013684744122,0.19980960958213,12.247685458099,0,0,2.44893156579854,0,12.0203957654566,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,3.39454300848285,0,0,0,1.44119953416961,31.4539063724125,9.92668097071018,9.14816028030948,9.97572449041936,21.4571909702152,0,0,0.408610218334727,15.5930554011069,13.6164042231261,9.13968743664207,0,0,0.121499113316049,11.404779378375,10.6387704853918,22.9751096031292,3.48481110514041,5.91648219798388,7.48469269545837,0,0,0.76280561296425,0,0,0,0,0,0,0.226624183040251,9.67244742275344,15.9008266694666,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=22941 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14295 | |||
|TSSclassifier=S | |||
|UniProt=C9JFP8 | |||
|association_with_transcript=0bp_to_ENST00000413503_5end | |||
|coexpression_cluster_id=C3198 | |||
|description=CAGE_peak_1_at_SHANK2_5end | |||
|id=chr11:70963538..70963630,- | |||
|ontology_enrichment_celltype=CL:0000223!6.77e-17!59;CL:0000066!1.38e-15!254;CL:0002076!4.76e-14!43;CL:0002368!9.89e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.90e-15;42!CL:0002368;3.76e-09;13!CL:0002251;1.29e-08;20!CL:1000497;3.24e-08;17!CL:0002518;3.24e-08;17!CL:1000507;1.02e-07;10!CL:1000494;1.02e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,4.39e-23,58;CL:0000066,1.60e-21,253;CL:0002076,9.51e-19,42;CL:0002368,3.67e-09,13;CL:0002251,1.69e-08,20;CL:1000497,3.44e-08,17;CL:0002518,3.44e-08,17;CL:1000507,1.13e-07,10;CL:1000494,1.13e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000223;4.61e-13;58!UBERON:0001041;5.62e-10;30!UBERON:0009497;1.49e-08;13!UBERON:0006595;1.28e-07;86!UBERON:0004161;7.29e-07;11 | |||
|ontology_enrichment_disease=DOID:305!9.79e-11!106;DOID:0050687!8.87e-10!143;DOID:299!1.59e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;3.80e-09;25 | |||
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| |||
|short_description=p1@SHANK2 | |||
}} |
Revision as of 19:27, 10 September 2013
Short description: | p1@SHANK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SHANK2_5end |
Coexpression cluster: | C3198_salivary_breast_submaxillary_Intestinal_Hepatocyte_Prostate_thyroid |
Association with transcript: | 0bp_to_ENST00000413503_5end |
EntrezGene: | SHANK2 |
HGNC: | 14295 |
UniProt: | C9JFP8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 4.39e-23 | 58 |
epithelial cell | 1.60e-21 | 253 |
endo-epithelial cell | 9.51e-19 | 42 |
respiratory epithelial cell | 3.67e-09 | 13 |
epithelial cell of alimentary canal | 1.69e-08 | 20 |
kidney cell | 3.44e-08 | 17 |
kidney epithelial cell | 3.44e-08 | 17 |
kidney tubule cell | 1.13e-07 | 10 |
nephron tubule epithelial cell | 1.13e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.73e-14 | 106 |
cell type cancer | 2.84e-13 | 143 |
adenocarcinoma | 3.78e-09 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.