FFCP PHASE1:Hg19::chr15:74495394..74495448,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64220|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30650|TSSclassifier=S|UniProt=B3KPB8,Q9BX79|association_with_transcript=107bp_to_NM_001142618,uc002axl.2,uc010bji.2,uc010bjj.1_5end|description=CAGE_peak_4_at_STRA6_5end|id=chr15:74495394..74495448,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000349;1.53e-11;19!CL:0002622;7.98e-08;3!CL:0000708;1.10e-07;3!CL:0000064;1.17e-07;3!CL:0000067;1.17e-07;3!CL:0005012;1.17e-07;3!CL:0002304;1.17e-07;3!CL:0000333;2.35e-07;5!CL:0000346;8.80e-07;3!CL:1000428;8.80e-07;3|ontology_enrichment_celltype_v019_2=CL:0000349,1.44e-11,19;CL:0002622,8.29e-08,3;CL:0000708,1.06e-07,3;CL:0000064,1.18e-07,3;CL:0000067,1.18e-07,3;CL:0005012,1.18e-07,3;CL:0002304,1.18e-07,3;CL:0000346,7.97e-07,3;CL:1000428,7.97e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000020!6.39e-10!23;UBERON:0001032!3.04e-09!24;UBERON:0004456!3.04e-09!24;UBERON:0002200!6.47e-09!11;UBERON:0006876!6.47e-09!11;UBERON:0007625!1.17e-08!11;UBERON:0000970!1.54e-08!20;UBERON:0000019!4.45e-08!19;UBERON:0000047!4.45e-08!19;UBERON:0004088!4.45e-08!19;UBERON:0003072!4.45e-08!19;UBERON:0003071!4.45e-08!19;UBERON:0004128!4.45e-08!19;UBERON:0001456!5.93e-08!21;UBERON:0002104!6.98e-08!21;UBERON:0000481!4.40e-07!347;UBERON:0002203!5.49e-07!6;UBERON:0001768!5.49e-07!6;UBERON:0005085!5.77e-07!29;UBERON:0000924!5.86e-07!173;UBERON:0006601!5.86e-07!173;UBERON:0004121!8.79e-07!169|ontology_enrichment_uberon_v019=UBERON:0006876;4.91e-16;11!UBERON:0007625;3.35e-15;11!UBERON:0000019;2.93e-14;19!UBERON:0000047;2.93e-14;19!UBERON:0004088;2.93e-14;19!UBERON:0010230;2.93e-14;19!UBERON:0002203;2.02e-13;6!UBERON:0001768;2.02e-13;6!UBERON:0002200;2.02e-13;6!UBERON:0000970;2.15e-13;20!UBERON:0002104;1.30e-12;21!UBERON:0001456;1.30e-12;21!UBERON:0001801;1.09e-11;14!UBERON:0000020;2.96e-11;23!UBERON:0001032;1.15e-10;24!UBERON:0004456;1.15e-10;24!UBERON:0000478;3.22e-10;24!UBERON:0000488;7.60e-10;4!UBERON:0003210;1.10e-07;3!UBERON:0001778;1.17e-07;3!UBERON:0001775;1.17e-07;3!UBERON:0005631;1.93e-07;10!UBERON:0000158;1.93e-07;10!UBERON:0000013;2.35e-07;5!UBERON:0002410;2.35e-07;5!UBERON:0010371;4.25e-07;31!UBERON:0000412;8.80e-07;3!UBERON:0001992;8.80e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0006876,5.66e-16,11;UBERON:0007625,3.47e-15,11;UBERON:0002203,2.39e-13,6;UBERON:0001768,2.39e-13,6;UBERON:0002200,2.39e-13,6;UBERON:0000019,2.45e-13,20;UBERON:0000047,2.45e-13,20;UBERON:0010312,2.45e-13,20;UBERON:0004088,2.45e-13,20;UBERON:0010230,2.45e-13,20;UBERON:0003072,2.45e-13,20;UBERON:0004128,2.45e-13,20;UBERON:0003071,2.45e-13,20;UBERON:0000970,1.47e-12,21;UBERON:0002104,1.47e-12,21;UBERON:0005085,3.77e-12,31;UBERON:0001456,7.50e-12,22;UBERON:0001801,1.08e-11,14;UBERON:0005631,6.60e-11,14;UBERON:0000158,6.60e-11,14;UBERON:0000020,1.28e-10,24;UBERON:0001032,1.28e-10,24;UBERON:0004456,1.28e-10,24;UBERON:0000478,2.83e-10,24;UBERON:0000488,8.08e-10,4;UBERON:0003210,1.06e-07,3;UBERON:0001778,1.18e-07,3;UBERON:0001775,1.18e-07,3;UBERON:0000013,1.70e-07,5;UBERON:0002410,1.70e-07,5;UBERON:0003124,3.12e-07,7;UBERON:0000412,7.97e-07,3;UBERON:0001992,7.97e-07,3;UBERON:0004121,8.10e-07,171;UBERON:0000924,8.10e-07,171;UBERON:0006601,8.10e-07,171|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,2.18441372130172,2.11013582582763,1.73272894144065,0.994192127183747,0,0,0,0,0.861847406537515,0.204000691244253,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.255725123687061,0.722878304769133,0,0,0,0,5.0103453096956,4.43458794925128,3.51339142772504,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573673241497627,0,0,0,0.24666754841716,0,0.134710672069688,0,9.83823279692054,14.404398112,1.64025002283658,0,0.570471821544449,0,0,0,0,0,0.122834317311768,0,0,0,0.910161361938026,0.718618141816238,0.336672227908132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0.323292113637624,0,0,0,0,0,0,0,0,0.116193942869518,0.725627385107593,0,0,1.56449532329816,5.14592750554308,1.38134921352481,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0.4115740113314,0,0,0,0,0,0,7.03428022223955,0.109750285408626,0,0,0.0925884451585296,0.651616610620649,0,5.77325368101093,2.78232971940184,5.16598254637615,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36393253036082,7.84728123899904,3.0802080044799,3.10252117818667,0,0.845302752556,7.71220538096124,6.24044621468197,0,0,0,0.285955987316295,2.71310802695722,0.823240336780769,0,0.355391948742546,2.37585561880029,0,0.871533458600294,0.799783929456456,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,1.30139853857622,0,0.335032530668698,0,0,0,0,2.08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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64220 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30650 | |||
|TSSclassifier=S | |||
|UniProt=B3KPB8,Q9BX79 | |||
|association_with_transcript=107bp_to_NM_001142618,uc002axl.2,uc010bji.2,uc010bjj.1_5end | |||
|description=CAGE_peak_4_at_STRA6_5end | |||
|id=chr15:74495394..74495448,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.53e-11;19!CL:0002622;7.98e-08;3!CL:0000708;1.10e-07;3!CL:0000064;1.17e-07;3!CL:0000067;1.17e-07;3!CL:0005012;1.17e-07;3!CL:0002304;1.17e-07;3!CL:0000333;2.35e-07;5!CL:0000346;8.80e-07;3!CL:1000428;8.80e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.44e-11,19;CL:0002622,8.29e-08,3;CL:0000708,1.06e-07,3;CL:0000064,1.18e-07,3;CL:0000067,1.18e-07,3;CL:0005012,1.18e-07,3;CL:0002304,1.18e-07,3;CL:0000346,7.97e-07,3;CL:1000428,7.97e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000020!6.39e-10!23;UBERON:0001032!3.04e-09!24;UBERON:0004456!3.04e-09!24;UBERON:0002200!6.47e-09!11;UBERON:0006876!6.47e-09!11;UBERON:0007625!1.17e-08!11;UBERON:0000970!1.54e-08!20;UBERON:0000019!4.45e-08!19;UBERON:0000047!4.45e-08!19;UBERON:0004088!4.45e-08!19;UBERON:0003072!4.45e-08!19;UBERON:0003071!4.45e-08!19;UBERON:0004128!4.45e-08!19;UBERON:0001456!5.93e-08!21;UBERON:0002104!6.98e-08!21;UBERON:0000481!4.40e-07!347;UBERON:0002203!5.49e-07!6;UBERON:0001768!5.49e-07!6;UBERON:0005085!5.77e-07!29;UBERON:0000924!5.86e-07!173;UBERON:0006601!5.86e-07!173;UBERON:0004121!8.79e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;4.91e-16;11!UBERON:0007625;3.35e-15;11!UBERON:0000019;2.93e-14;19!UBERON:0000047;2.93e-14;19!UBERON:0004088;2.93e-14;19!UBERON:0010230;2.93e-14;19!UBERON:0002203;2.02e-13;6!UBERON:0001768;2.02e-13;6!UBERON:0002200;2.02e-13;6!UBERON:0000970;2.15e-13;20!UBERON:0002104;1.30e-12;21!UBERON:0001456;1.30e-12;21!UBERON:0001801;1.09e-11;14!UBERON:0000020;2.96e-11;23!UBERON:0001032;1.15e-10;24!UBERON:0004456;1.15e-10;24!UBERON:0000478;3.22e-10;24!UBERON:0000488;7.60e-10;4!UBERON:0003210;1.10e-07;3!UBERON:0001778;1.17e-07;3!UBERON:0001775;1.17e-07;3!UBERON:0005631;1.93e-07;10!UBERON:0000158;1.93e-07;10!UBERON:0000013;2.35e-07;5!UBERON:0002410;2.35e-07;5!UBERON:0010371;4.25e-07;31!UBERON:0000412;8.80e-07;3!UBERON:0001992;8.80e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,5.66e-16,11;UBERON:0007625,3.47e-15,11;UBERON:0002203,2.39e-13,6;UBERON:0001768,2.39e-13,6;UBERON:0002200,2.39e-13,6;UBERON:0000019,2.45e-13,20;UBERON:0000047,2.45e-13,20;UBERON:0010312,2.45e-13,20;UBERON:0004088,2.45e-13,20;UBERON:0010230,2.45e-13,20;UBERON:0003072,2.45e-13,20;UBERON:0004128,2.45e-13,20;UBERON:0003071,2.45e-13,20;UBERON:0000970,1.47e-12,21;UBERON:0002104,1.47e-12,21;UBERON:0005085,3.77e-12,31;UBERON:0001456,7.50e-12,22;UBERON:0001801,1.08e-11,14;UBERON:0005631,6.60e-11,14;UBERON:0000158,6.60e-11,14;UBERON:0000020,1.28e-10,24;UBERON:0001032,1.28e-10,24;UBERON:0004456,1.28e-10,24;UBERON:0000478,2.83e-10,24;UBERON:0000488,8.08e-10,4;UBERON:0003210,1.06e-07,3;UBERON:0001778,1.18e-07,3;UBERON:0001775,1.18e-07,3;UBERON:0000013,1.70e-07,5;UBERON:0002410,1.70e-07,5;UBERON:0003124,3.12e-07,7;UBERON:0000412,7.97e-07,3;UBERON:0001992,7.97e-07,3;UBERON:0004121,8.10e-07,171;UBERON:0000924,8.10e-07,171;UBERON:0006601,8.10e-07,171 | |||
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| |||
|short_description=p4@STRA6 | |||
}} |
Revision as of 08:13, 11 September 2013
Short description: | p4@STRA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_STRA6_5end |
Coexpression cluster: | NA |
Association with transcript: | 107bp_to_NM_001142618, uc002axl.2, uc010bji.2, uc010bjj.1_5end |
EntrezGene: | STRA6 |
HGNC: | 30650 |
UniProt: | B3KPB8Q9BX79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.44e-11 | 19 |
prostate stromal cell | 8.29e-08 | 3 |
leptomeningeal cell | 1.06e-07 | 3 |
ciliated cell | 1.18e-07 | 3 |
ciliated epithelial cell | 1.18e-07 | 3 |
multi-ciliated epithelial cell | 1.18e-07 | 3 |
non-pigmented ciliary epithelial cell | 1.18e-07 | 3 |
hair follicle dermal papilla cell | 7.97e-07 | 3 |
stem cell of epidermis | 7.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of organ | 5.66e-16 | 11 |
pigment epithelium of eye | 3.47e-15 | 11 |
vasculature of eye | 2.39e-13 | 6 |
uvea | 2.39e-13 | 6 |
vasculature of head | 2.39e-13 | 6 |
camera-type eye | 2.45e-13 | 20 |
simple eye | 2.45e-13 | 20 |
immature eye | 2.45e-13 | 20 |
ocular region | 2.45e-13 | 20 |
eyeball of camera-type eye | 2.45e-13 | 20 |
optic cup | 2.45e-13 | 20 |
optic vesicle | 2.45e-13 | 20 |
eye primordium | 2.45e-13 | 20 |
eye | 1.47e-12 | 21 |
visual system | 1.47e-12 | 21 |
ectodermal placode | 3.77e-12 | 31 |
face | 7.50e-12 | 22 |
anterior segment of eyeball | 1.08e-11 | 14 |
extraembryonic membrane | 6.60e-11 | 14 |
membranous layer | 6.60e-11 | 14 |
sense organ | 1.28e-10 | 24 |
sensory system | 1.28e-10 | 24 |
entire sense organ system | 1.28e-10 | 24 |
extraembryonic structure | 2.83e-10 | 24 |
atypical epithelium | 8.08e-10 | 4 |
blood-cerebrospinal fluid barrier | 1.06e-07 | 3 |
ciliary epithelium | 1.18e-07 | 3 |
ciliary body | 1.18e-07 | 3 |
sympathetic nervous system | 1.70e-07 | 5 |
autonomic nervous system | 1.70e-07 | 5 |
chorion | 3.12e-07 | 7 |
dermal papilla | 7.97e-07 | 3 |
papillary layer of dermis | 7.97e-07 | 3 |
ectoderm-derived structure | 8.10e-07 | 171 |
ectoderm | 8.10e-07 | 171 |
presumptive ectoderm | 8.10e-07 | 171 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.