FFCP PHASE1:Hg19::chr17:38498510..38498540,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5914|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9864|TSSclassifier=S|UniProt=|association_with_transcript=-74bp_to_ENST00000394081_5end|coexpression_cluster_id=C2|description=CAGE_peak_7_at_RARA_5end|id=chr17:38498510..38498540,+|ontology_enrichment_celltype=CL:0002057!2.02e-19!42;CL:0000860!1.33e-16!45;CL:0000766!6.41e-14!76;CL:0000557!2.89e-10!71;CL:0002009!7.84e-10!65;CL:0000839!4.60e-09!70;CL:0002194!4.77e-09!63;CL:0000576!4.77e-09!63;CL:0000040!4.77e-09!63;CL:0000559!4.77e-09!63;CL:0000094!5.88e-07!8|ontology_enrichment_celltype_v019=CL:0000860;1.30e-22;33!CL:0002057;1.30e-22;33!CL:0000576;2.38e-16;48!CL:0000473;8.89e-15;39!CL:0000234;8.89e-15;39!CL:0000766;1.14e-12;69!CL:0000094;5.50e-11;8!CL:0002393;1.57e-07;6!CL:0002397;1.57e-07;6!CL:0000081;2.44e-07;11|ontology_enrichment_celltype_v019_2=CL:0000860,2.56e-32,42;CL:0002057,2.56e-32,42;CL:0000473,1.74e-26,48;CL:0000234,1.74e-26,48;CL:0000766,8.60e-26,72;CL:0002009,5.86e-20,61;CL:0000557,2.02e-19,67;CL:0002194,1.81e-18,59;CL:0000576,1.81e-18,59;CL:0000040,1.81e-18,59;CL:0000559,1.81e-18,59;CL:0000839,1.66e-17,66;CL:0000763,2.76e-14,108;CL:0000049,2.76e-14,108;CL:0000094,8.79e-11,8;CL:0000738,2.85e-09,136;CL:0002393,1.62e-07,9;CL:0002397,1.62e-07,9;CL:0000081,3.33e-07,11|ontology_enrichment_development_v019=CL:0002057;4.31e-22;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003081!1.45e-14!216;UBERON:0002405!5.91e-10!115;UBERON:0002390!8.18e-10!102;UBERON:0003061!8.18e-10!102;UBERON:0002193!9.32e-10!112;UBERON:0000467!5.06e-09!625;UBERON:0000468!5.43e-09!659;UBERON:0000480!7.52e-09!626;UBERON:0002371!4.11e-08!80;UBERON:0001009!8.50e-08!113;UBERON:0003914!8.55e-08!118;UBERON:0000926!1.11e-07!448;UBERON:0004120!1.11e-07!448;UBERON:0006603!1.11e-07!448;UBERON:0004535!3.32e-07!110;UBERON:0002204!3.32e-07!167;UBERON:0001474!7.69e-07!86;UBERON:0000923!8.88e-07!604;UBERON:0005291!8.88e-07!604;UBERON:0006598!8.88e-07!604;UBERON:0002532!8.88e-07!604|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.51e-20,98;UBERON:0003061,3.51e-20,98;UBERON:0002193,3.10e-18,108;UBERON:0002371,2.03e-16,76;UBERON:0001474,3.17e-14,82;UBERON:0002405,5.46e-14,93;UBERON:0003081,6.11e-14,203;UBERON:0004765,8.34e-12,90;UBERON:0001434,1.05e-10,100;UBERON:0000926,5.18e-09,315;UBERON:0004120,5.18e-09,315;UBERON:0006603,5.18e-09,315;UBERON:0002204,1.10e-07,167|phase1_expression=0.54503513781167,0.642301571672949,0.704772020479856,0,0,2.61701557230111,5.06599756336621,0,0,1.72013755551056,0.697801167972428,0,0,0.123766352960047,0.331397375727916,0,0,0,0,1.10808952269109,1.22400414746552,2.5076377718247,1.14494394852423,0.273748850145768,0.502170558379211,0,0,0,4.72037132218685,1.15148819429164,6.65709330259127,0,0,0,0,0,0.293600439334847,3.32397245119126,4.21143339687298,2.82114131930607,0.223915474239924,0.32389366601898,0.257575567634187,2.61716829803216,2.26725566213286,1.94067248950253,2.32429036905685,1.23350366406548,2.16794459626573,2.8769239232215,1.7931249457037,1.6553756092201,2.75796544589295,0,2.70852973188684,3.01187743268168,3.547779950752,1.34834090667051,3.67300670845083,2.24650318953266,3.83602275479425,2.63881040149373,1.59570926097305,2.98357325372886,1.16083695451434,0,1.86846674698672,2.26123798731069,1.0429658368404,1.73751075764093,1.81619850790011,1.47311054395026,1.58231193720442,2.32380814943136,2.12604299965044,1.04829322754188,2.58355851636939,1.35159203557356,1.92870704036496,1.71007646244749,1.59133341759272,0.547992461293902,0,0,0,0,0,0,0,0,0,0.587237189370939,1.14681968437569,0,0.560508562981536,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,1.04535523804977,0,0,0,0,0,0,0,0,0.127986611154418,0,0.473554504088034,0,0,0,0,0,1.34140171940727,2.30152611318355,0.361439152384566,0,1.15877215168659,0,0,0.378139268656271,0.886917589850256,1.49319135678314,1.70272798147026,0,0,0,0,0,0.476981248610684,0,0.371457501329565,0.993812036833525,0,0,0.56530794192401,0.838998872419812,0.825354125820202,0.417989933073621,0.258416759169329,0.35576626268671,1.00416183829401,1.20848795132744,0.760272105718513,0.976248230192678,0,0.81014194788176,0.267899184852239,0,0.112611480483322,0,0.949265659568129,0.549605231791222,6.58902087180316,15.511210565933,0,0.496971951695318,0.506522046658319,0.264818361626438,1.43418310374407,1.41867352879343,0,1.06748995729705,2.71334303258876,0.311211035399766,0.808264032418128,0.490385709340376,1.51357427644931,1.15235184896,0.234321431833797,0,0,0,0,0,0,0.204154171254893,0,0,0,0.494533858557114,0,1.43723628363248,0,0.125118519871964,0,0,0.30648779579902,0,0.907457465280168,0.179389635688862,0,0.423863802319124,0.300091096084402,1.23663035086127,0.515281080091258,0,0.506328996723799,1.16924406193438,0.252433774244115,0.0920498986422993,1.93975268182574,0.355009592516614,0.10075209822764,0.169560592310488,0.386521706326594,0,0,0,0,0,0.518305275076852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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5914 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9864 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-74bp_to_ENST00000394081_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_7_at_RARA_5end | |||
|id=chr17:38498510..38498540,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.02e-19!42;CL:0000860!1.33e-16!45;CL:0000766!6.41e-14!76;CL:0000557!2.89e-10!71;CL:0002009!7.84e-10!65;CL:0000839!4.60e-09!70;CL:0002194!4.77e-09!63;CL:0000576!4.77e-09!63;CL:0000040!4.77e-09!63;CL:0000559!4.77e-09!63;CL:0000094!5.88e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.30e-22;33!CL:0002057;1.30e-22;33!CL:0000576;2.38e-16;48!CL:0000473;8.89e-15;39!CL:0000234;8.89e-15;39!CL:0000766;1.14e-12;69!CL:0000094;5.50e-11;8!CL:0002393;1.57e-07;6!CL:0002397;1.57e-07;6!CL:0000081;2.44e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.56e-32,42;CL:0002057,2.56e-32,42;CL:0000473,1.74e-26,48;CL:0000234,1.74e-26,48;CL:0000766,8.60e-26,72;CL:0002009,5.86e-20,61;CL:0000557,2.02e-19,67;CL:0002194,1.81e-18,59;CL:0000576,1.81e-18,59;CL:0000040,1.81e-18,59;CL:0000559,1.81e-18,59;CL:0000839,1.66e-17,66;CL:0000763,2.76e-14,108;CL:0000049,2.76e-14,108;CL:0000094,8.79e-11,8;CL:0000738,2.85e-09,136;CL:0002393,1.62e-07,9;CL:0002397,1.62e-07,9;CL:0000081,3.33e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;4.31e-22;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.45e-14!216;UBERON:0002405!5.91e-10!115;UBERON:0002390!8.18e-10!102;UBERON:0003061!8.18e-10!102;UBERON:0002193!9.32e-10!112;UBERON:0000467!5.06e-09!625;UBERON:0000468!5.43e-09!659;UBERON:0000480!7.52e-09!626;UBERON:0002371!4.11e-08!80;UBERON:0001009!8.50e-08!113;UBERON:0003914!8.55e-08!118;UBERON:0000926!1.11e-07!448;UBERON:0004120!1.11e-07!448;UBERON:0006603!1.11e-07!448;UBERON:0004535!3.32e-07!110;UBERON:0002204!3.32e-07!167;UBERON:0001474!7.69e-07!86;UBERON:0000923!8.88e-07!604;UBERON:0005291!8.88e-07!604;UBERON:0006598!8.88e-07!604;UBERON:0002532!8.88e-07!604 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.51e-20,98;UBERON:0003061,3.51e-20,98;UBERON:0002193,3.10e-18,108;UBERON:0002371,2.03e-16,76;UBERON:0001474,3.17e-14,82;UBERON:0002405,5.46e-14,93;UBERON:0003081,6.11e-14,203;UBERON:0004765,8.34e-12,90;UBERON:0001434,1.05e-10,100;UBERON:0000926,5.18e-09,315;UBERON:0004120,5.18e-09,315;UBERON:0006603,5.18e-09,315;UBERON:0002204,1.10e-07,167 | |||
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| |||
|short_description=p7@RARA | |||
}} |
Revision as of 13:26, 11 September 2013
Short description: | p7@RARA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_RARA_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -74bp_to_ENST00000394081_5end |
EntrezGene: | RARA |
HGNC: | 9864 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.56e-32 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.56e-32 | 42 |
defensive cell | 1.74e-26 | 48 |
phagocyte | 1.74e-26 | 48 |
myeloid leukocyte | 8.60e-26 | 72 |
macrophage dendritic cell progenitor | 5.86e-20 | 61 |
granulocyte monocyte progenitor cell | 2.02e-19 | 67 |
monopoietic cell | 1.81e-18 | 59 |
monocyte | 1.81e-18 | 59 |
monoblast | 1.81e-18 | 59 |
promonocyte | 1.81e-18 | 59 |
myeloid lineage restricted progenitor cell | 1.66e-17 | 66 |
myeloid cell | 2.76e-14 | 108 |
common myeloid progenitor | 2.76e-14 | 108 |
granulocyte | 8.79e-11 | 8 |
leukocyte | 2.85e-09 | 136 |
intermediate monocyte | 1.62e-07 | 9 |
CD14-positive, CD16-positive monocyte | 1.62e-07 | 9 |
blood cell | 3.33e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.51e-20 | 98 |
blood island | 3.51e-20 | 98 |
hemolymphoid system | 3.10e-18 | 108 |
bone marrow | 2.03e-16 | 76 |
bone element | 3.17e-14 | 82 |
immune system | 5.46e-14 | 93 |
lateral plate mesoderm | 6.11e-14 | 203 |
skeletal element | 8.34e-12 | 90 |
skeletal system | 1.05e-10 | 100 |
mesoderm | 5.18e-09 | 315 |
mesoderm-derived structure | 5.18e-09 | 315 |
presumptive mesoderm | 5.18e-09 | 315 |
musculoskeletal system | 1.10e-07 | 167 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.