FFCP PHASE1:Hg19::chr1:205012378..205012389,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6900|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2172|TSSclassifier=S|UniProt=A1L3A3,Q02246|association_with_transcript=38bp_to_NM_005076,uc001hbr.2_5end|coexpression_cluster_id=C4|description=CAGE_peak_3_at_CNTN2_5end|id=chr1:205012378..205012389,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000123;3.60e-07;2!CL:0000242;3.60e-07;2|ontology_enrichment_celltype_v019_2=CL:0000242,3.84e-07,2|ontology_enrichment_development_v019=UBERON:0006601;3.84e-21;82!UBERON:0006215;1.30e-10;3!UBERON:0006241;4.07e-10;3!UBERON:0003057;4.07e-10;3!UBERON:0010122;8.23e-07;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.08e-78!57;UBERON:0005068!1.08e-78!57;UBERON:0006241!1.08e-78!57;UBERON:0007135!1.08e-78!57;UBERON:0000073!1.70e-73!94;UBERON:0001016!1.70e-73!94;UBERON:0001017!1.17e-72!82;UBERON:0005743!3.82e-71!86;UBERON:0007023!1.49e-69!115;UBERON:0002616!1.68e-65!59;UBERON:0002780!1.03e-60!41;UBERON:0001890!1.03e-60!41;UBERON:0006240!1.03e-60!41;UBERON:0003080!4.96e-59!42;UBERON:0000955!6.10e-59!69;UBERON:0006238!6.10e-59!69;UBERON:0003075!2.35e-56!86;UBERON:0007284!2.35e-56!86;UBERON:0001893!1.23e-54!34;UBERON:0002020!1.36e-54!34;UBERON:0003528!1.36e-54!34;UBERON:0002346!3.50e-53!90;UBERON:0002791!1.39e-52!33;UBERON:0001869!1.87e-50!32;UBERON:0002619!6.35e-43!22;UBERON:0004121!2.89e-42!169;UBERON:0003056!7.92e-42!61;UBERON:0000924!7.07e-41!173;UBERON:0006601!7.07e-41!173;UBERON:0001950!3.88e-39!20;UBERON:0000956!3.74e-37!25;UBERON:0000203!3.74e-37!25;UBERON:0000033!4.43e-36!123;UBERON:0000153!1.03e-33!129;UBERON:0007811!1.03e-33!129;UBERON:0003076!9.16e-20!15;UBERON:0003057!9.16e-20!15;UBERON:0002308!7.12e-19!9;UBERON:0000125!7.12e-19!9;UBERON:0002420!3.39e-18!9;UBERON:0007245!3.39e-18!9;UBERON:0010009!3.39e-18!9;UBERON:0010011!3.39e-18!9;UBERON:0000454!3.39e-18!9;UBERON:0000025!1.21e-17!194;UBERON:0004732!2.06e-16!13;UBERON:0004111!9.26e-16!241;UBERON:0009663!9.36e-15!7;UBERON:0004733!2.31e-14!12;UBERON:0002028!2.31e-14!12;UBERON:0007277!2.31e-14!12;UBERON:0000200!5.56e-14!6;UBERON:0002298!1.14e-13!8;UBERON:0001871!4.04e-13!7;UBERON:0000477!7.29e-13!286;UBERON:0002021!2.91e-12!5;UBERON:0000064!6.00e-12!219;UBERON:0000483!2.03e-11!309;UBERON:0001872!2.40e-11!5;UBERON:0000119!3.69e-11!312;UBERON:0000349!1.01e-10!5;UBERON:0000922!1.33e-10!612;UBERON:0000475!1.58e-10!365;UBERON:0000481!2.01e-09!347;UBERON:0002680!6.41e-09!9;UBERON:0001895!6.41e-09!9;UBERON:0010092!6.41e-09!9;UBERON:0000062!6.51e-09!511;UBERON:0000923!9.05e-09!604;UBERON:0005291!9.05e-09!604;UBERON:0006598!9.05e-09!604;UBERON:0002532!9.05e-09!604;UBERON:0002050!1.02e-08!605;UBERON:0005423!1.02e-08!605;UBERON:0000369!1.06e-08!4;UBERON:0002435!1.06e-08!4;UBERON:0000204!1.06e-08!4;UBERON:0010082!1.06e-08!4;UBERON:0000467!2.84e-08!625;UBERON:0000468!3.04e-08!659;UBERON:0000480!3.17e-08!626;UBERON:0002771!7.53e-08!3;UBERON:0000988!7.70e-08!3;UBERON:0006331!9.20e-08!3;UBERON:0001894!9.85e-08!7;UBERON:0006222!9.85e-08!7;UBERON:0001896!1.07e-07!3;UBERON:0005290!1.07e-07!3;UBERON:0010096!1.07e-07!3;UBERON:0002240!2.46e-07!3;UBERON:0005383!8.34e-07!3;UBERON:0005382!8.34e-07!3|ontology_enrichment_uberon_v019=UBERON:0001893;2.97e-68;34!UBERON:0003528;1.81e-67;34!UBERON:0002020;1.81e-67;34!UBERON:0001869;2.33e-66;32!UBERON:0002791;3.33e-66;32!UBERON:0002619;8.08e-63;22!UBERON:0002780;7.29e-61;41!UBERON:0001890;7.29e-61;41!UBERON:0000073;1.41e-59;53!UBERON:0002616;1.41e-59;53!UBERON:0001950;3.54e-57;20!UBERON:0000956;7.19e-55;25!UBERON:0000203;7.19e-55;25!UBERON:0000955;1.13e-38;68!UBERON:0001017;1.18e-38;75!UBERON:0001016;5.15e-34;83!UBERON:0000125;4.24e-27;9!UBERON:0002308;4.24e-27;9!UBERON:0002420;5.45e-26;9!UBERON:0007245;5.45e-26;9!UBERON:0010009;5.45e-26;9!UBERON:0010011;5.45e-26;9!UBERON:0000454;5.45e-26;9!UBERON:0004732;5.36e-24;13!UBERON:0009663;5.39e-21;7!UBERON:0004733;5.98e-21;12!UBERON:0002028;5.98e-21;12!UBERON:0000200;6.39e-20;6!UBERON:0002298;1.18e-19;6!UBERON:0007023;8.16e-19;114!UBERON:0002021;2.52e-17;5!UBERON:0001872;4.75e-16;5!UBERON:0001871;1.08e-15;6!UBERON:0000349;5.67e-15;5!UBERON:0011216;2.40e-14;132!UBERON:0002680;7.06e-13;9!UBERON:0001895;7.06e-13;9!UBERON:0000369;4.27e-12;4!UBERON:0002435;4.27e-12;4!UBERON:0000204;4.27e-12;4!UBERON:0000988;8.52e-11;3!UBERON:0001870;1.30e-10;3!UBERON:0001896;1.39e-10;3!UBERON:0005290;1.39e-10;3!UBERON:0002240;4.07e-10;3!UBERON:0005174;4.07e-10;3!UBERON:0001137;4.07e-10;3!UBERON:0005383;2.45e-09;3!UBERON:0005382;2.45e-09;3!UBERON:0010314;5.62e-09;132!UBERON:0005162;2.98e-08;2!UBERON:0000122;2.98e-08;2!UBERON:0002702;7.56e-08;2!UBERON:0002148;8.08e-08;2!UBERON:0006331;8.08e-08;2!UBERON:0009662;8.08e-08;2!UBERON:0001875;8.93e-08;2!UBERON:0006514;8.93e-08;2!UBERON:0002771;9.87e-08;2!UBERON:0002784;1.23e-07;4!UBERON:0001894;1.49e-07;7!UBERON:0001897;2.09e-07;2!UBERON:0010225;2.09e-07;2!UBERON:0001954;3.38e-07;2!UBERON:0003022;3.38e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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6900 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2172 | |||
|TSSclassifier=S | |||
|UniProt=A1L3A3,Q02246 | |||
|association_with_transcript=38bp_to_NM_005076,uc001hbr.2_5end | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_3_at_CNTN2_5end | |||
|id=chr1:205012378..205012389,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000123;3.60e-07;2!CL:0000242;3.60e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,3.84e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.84e-21;82!UBERON:0006215;1.30e-10;3!UBERON:0006241;4.07e-10;3!UBERON:0003057;4.07e-10;3!UBERON:0010122;8.23e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p3@CNTN2 | |||
}} |
Revision as of 03:02, 12 September 2013
Short description: | p3@CNTN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CNTN2_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | 38bp_to_NM_005076, uc001hbr.2_5end |
EntrezGene: | CNTN2 |
HGNC: | 2172 |
UniProt: | A1L3A3Q02246 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 3.84e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.