FFCP PHASE1:Hg19::chr1:42902892..42902896,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C120|description=CAGE_peak_at_chr1:42902892..42902896,+|id=chr1:42902892..42902896,+|ontology_enrichment_celltype=CL:0002009!7.94e-48!65;CL:0002194!3.73e-45!63;CL:0000576!3.73e-45!63;CL:0000040!3.73e-45!63;CL:0000559!3.73e-45!63;CL:0000557!1.08e-43!71;CL:0002057!2.08e-42!42;CL:0000766!4.30e-41!76;CL:0000839!2.87e-40!70;CL:0000860!1.55e-38!45;CL:0000763!6.63e-38!112;CL:0000049!6.63e-38!112;CL:0000738!1.05e-29!140;CL:0000037!2.81e-29!172;CL:0000566!2.81e-29!172;CL:0002087!3.07e-27!119;CL:0000988!3.43e-26!182;CL:0002032!3.56e-26!165;CL:0000837!3.56e-26!165;CL:0002031!2.09e-25!124;CL:0002393!2.43e-12!9;CL:0002397!2.43e-12!9;CL:0000134!1.28e-09!358;CL:0000219!1.31e-09!390;CL:0002320!5.98e-09!365;CL:0000990!4.55e-08!8;CL:0000451!5.84e-08!10;CL:0000840!1.26e-07!5;CL:0001029!1.26e-07!5|ontology_enrichment_celltype_v019=CL:0000576;2.01e-40;48!CL:0000860;5.47e-35;33!CL:0002057;5.47e-35;33!CL:0000766;6.16e-29;69!CL:0000473;5.09e-25;39!CL:0000234;5.09e-25;39!CL:0002393;1.09e-21;6!CL:0002397;1.09e-21;6!CL:0000875;1.74e-16;3!CL:0002396;1.74e-16;3!CL:0001014;1.54e-12;2!CL:0001016;1.54e-12;2!CL:0000763;5.64e-12;100!CL:0000738;7.21e-11;136!CL:0002087;9.70e-11;104!CL:0000037;7.38e-07;1!CL:0001024;7.38e-07;1|ontology_enrichment_celltype_v019_2=CL:0000860,2.52e-68,42;CL:0002057,2.52e-68,42;CL:0002009,1.23e-66,61;CL:0000473,3.43e-64,48;CL:0000234,3.43e-64,48;CL:0000557,3.11e-60,67;CL:0002194,5.66e-59,59;CL:0000576,5.66e-59,59;CL:0000040,5.66e-59,59;CL:0000559,5.66e-59,59;CL:0000839,3.23e-52,66;CL:0000766,2.95e-51,72;CL:0000763,5.53e-41,108;CL:0000049,5.53e-41,108;CL:0002393,9.59e-37,9;CL:0002397,9.59e-37,9;CL:0002031,1.31e-33,120;CL:0000738,1.71e-33,136;CL:0002087,1.91e-32,115;CL:0000037,5.05e-30,168;CL:0000988,3.57e-28,177;CL:0002032,1.98e-27,161;CL:0000837,1.98e-27,161;CL:0000875,2.22e-16,3;CL:0002396,2.22e-16,3;CL:0001014,1.55e-12,2;CL:0001016,1.55e-12,2;CL:0000134,9.85e-12,354;CL:0002320,2.26e-11,361;CL:0000219,4.97e-11,386;CL:0000048,1.51e-08,427;CL:0000723,2.47e-08,433;CL:0000034,4.68e-08,441;CL:0001024,8.97e-07,1|ontology_enrichment_development_v019=CL:0002057;5.69e-47;42!CL:0000049;3.95e-14;108!UBERON:0010115;7.38e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!5.63e-40!80;UBERON:0001474!3.67e-37!86;UBERON:0004765!5.45e-31!101;UBERON:0001434!5.45e-31!101;UBERON:0002390!6.04e-31!102;UBERON:0003061!6.04e-31!102;UBERON:0002193!8.06e-30!112;UBERON:0002405!1.17e-27!115;UBERON:0002204!9.07e-12!167;UBERON:0003081!1.84e-09!216;UBERON:0002384!9.43e-09!375|ontology_enrichment_uberon_v019=UBERON:0002363;7.38e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.62e-56,76;UBERON:0001474,5.44e-52,82;UBERON:0004765,6.97e-47,90;UBERON:0002390,1.06e-45,98;UBERON:0003061,1.06e-45,98;UBERON:0002405,3.42e-45,93;UBERON:0001434,1.23e-41,100;UBERON:0002193,6.15e-41,108;UBERON:0002204,1.45e-22,167;UBERON:0003081,6.19e-19,203;UBERON:0000926,6.02e-11,315;UBERON:0004120,6.02e-11,315;UBERON:0006603,6.02e-11,315;UBERON:0002384,7.00e-11,371;UBERON:0002363,6.08e-07,1;UBERON:0007645,6.08e-07,1;UBERON:0007647,6.08e-07,1;UBERON:0010115,6.08e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0,0.786728553697808,0.767658796194425,1.23852898652861,0,0,0,0,0.284338464974843,2.05520307534393,1.66198622559563,1.80490002723128,1.73608696572681,0.447830948479849,0,0.257575567634187,0.145398238779565,0,0.242584061187816,1.16214518452842,1.6446715520873,0.619412741790207,0.575384784644301,1.5369642391746,0.47296445977717,4.82643953031266,0.645484683583826,1.35426486594342,0.941211697713023,1.36453075028923,0.449446968890169,2.44867113896722,3.20929027076094,3.19668562899521,0.329851300186716,1.19678194572979,0.426224750532694,0.580418477257168,2.8369261234557,0.622822248995575,1.50749199154046,2.08593167368081,0.868755378820466,1.81619850790011,3.68277635987565,3.16462387440884,1.90129757680748,2.55125159958052,0.209658645508376,0.336985893439485,0,0,2.56511469367124,1.39241674039363,1.0959849225878,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0.324547393654683,0.174129737299267,0.26591592103773,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0,0.232387885739037,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0.380508304469197,0,0,0.492434012174795,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C120 | |||
|description=CAGE_peak_at_chr1:42902892..42902896,+ | |||
|id=chr1:42902892..42902896,+ | |||
|ontology_enrichment_celltype=CL:0002009!7.94e-48!65;CL:0002194!3.73e-45!63;CL:0000576!3.73e-45!63;CL:0000040!3.73e-45!63;CL:0000559!3.73e-45!63;CL:0000557!1.08e-43!71;CL:0002057!2.08e-42!42;CL:0000766!4.30e-41!76;CL:0000839!2.87e-40!70;CL:0000860!1.55e-38!45;CL:0000763!6.63e-38!112;CL:0000049!6.63e-38!112;CL:0000738!1.05e-29!140;CL:0000037!2.81e-29!172;CL:0000566!2.81e-29!172;CL:0002087!3.07e-27!119;CL:0000988!3.43e-26!182;CL:0002032!3.56e-26!165;CL:0000837!3.56e-26!165;CL:0002031!2.09e-25!124;CL:0002393!2.43e-12!9;CL:0002397!2.43e-12!9;CL:0000134!1.28e-09!358;CL:0000219!1.31e-09!390;CL:0002320!5.98e-09!365;CL:0000990!4.55e-08!8;CL:0000451!5.84e-08!10;CL:0000840!1.26e-07!5;CL:0001029!1.26e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000576;2.01e-40;48!CL:0000860;5.47e-35;33!CL:0002057;5.47e-35;33!CL:0000766;6.16e-29;69!CL:0000473;5.09e-25;39!CL:0000234;5.09e-25;39!CL:0002393;1.09e-21;6!CL:0002397;1.09e-21;6!CL:0000875;1.74e-16;3!CL:0002396;1.74e-16;3!CL:0001014;1.54e-12;2!CL:0001016;1.54e-12;2!CL:0000763;5.64e-12;100!CL:0000738;7.21e-11;136!CL:0002087;9.70e-11;104!CL:0000037;7.38e-07;1!CL:0001024;7.38e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.52e-68,42;CL:0002057,2.52e-68,42;CL:0002009,1.23e-66,61;CL:0000473,3.43e-64,48;CL:0000234,3.43e-64,48;CL:0000557,3.11e-60,67;CL:0002194,5.66e-59,59;CL:0000576,5.66e-59,59;CL:0000040,5.66e-59,59;CL:0000559,5.66e-59,59;CL:0000839,3.23e-52,66;CL:0000766,2.95e-51,72;CL:0000763,5.53e-41,108;CL:0000049,5.53e-41,108;CL:0002393,9.59e-37,9;CL:0002397,9.59e-37,9;CL:0002031,1.31e-33,120;CL:0000738,1.71e-33,136;CL:0002087,1.91e-32,115;CL:0000037,5.05e-30,168;CL:0000988,3.57e-28,177;CL:0002032,1.98e-27,161;CL:0000837,1.98e-27,161;CL:0000875,2.22e-16,3;CL:0002396,2.22e-16,3;CL:0001014,1.55e-12,2;CL:0001016,1.55e-12,2;CL:0000134,9.85e-12,354;CL:0002320,2.26e-11,361;CL:0000219,4.97e-11,386;CL:0000048,1.51e-08,427;CL:0000723,2.47e-08,433;CL:0000034,4.68e-08,441;CL:0001024,8.97e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002057;5.69e-47;42!CL:0000049;3.95e-14;108!UBERON:0010115;7.38e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.63e-40!80;UBERON:0001474!3.67e-37!86;UBERON:0004765!5.45e-31!101;UBERON:0001434!5.45e-31!101;UBERON:0002390!6.04e-31!102;UBERON:0003061!6.04e-31!102;UBERON:0002193!8.06e-30!112;UBERON:0002405!1.17e-27!115;UBERON:0002204!9.07e-12!167;UBERON:0003081!1.84e-09!216;UBERON:0002384!9.43e-09!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002363;7.38e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.62e-56,76;UBERON:0001474,5.44e-52,82;UBERON:0004765,6.97e-47,90;UBERON:0002390,1.06e-45,98;UBERON:0003061,1.06e-45,98;UBERON:0002405,3.42e-45,93;UBERON:0001434,1.23e-41,100;UBERON:0002193,6.15e-41,108;UBERON:0002204,1.45e-22,167;UBERON:0003081,6.19e-19,203;UBERON:0000926,6.02e-11,315;UBERON:0004120,6.02e-11,315;UBERON:0006603,6.02e-11,315;UBERON:0002384,7.00e-11,371;UBERON:0002363,6.08e-07,1;UBERON:0007645,6.08e-07,1;UBERON:0007647,6.08e-07,1;UBERON:0010115,6.08e-07,1 | |||
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|short_description=p@chr1:42902892..42902896,+ | |||
}} |
Revision as of 05:46, 12 September 2013
Short description: | p@chr1:42902892..42902896, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:42902892..42902896, + |
Coexpression cluster: | C120_immature_salivary_tongue_skin_cervical_CD14_CD34 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.62e-56 | 76 |
bone element | 5.44e-52 | 82 |
skeletal element | 6.97e-47 | 90 |
hematopoietic system | 1.06e-45 | 98 |
blood island | 1.06e-45 | 98 |
immune system | 3.42e-45 | 93 |
skeletal system | 1.23e-41 | 100 |
hemolymphoid system | 6.15e-41 | 108 |
musculoskeletal system | 1.45e-22 | 167 |
lateral plate mesoderm | 6.19e-19 | 203 |
mesoderm | 6.02e-11 | 315 |
mesoderm-derived structure | 6.02e-11 | 315 |
presumptive mesoderm | 6.02e-11 | 315 |
connective tissue | 7.00e-11 | 371 |
dura mater | 6.08e-07 | 1 |
future meninx | 6.08e-07 | 1 |
ectomeninx | 6.08e-07 | 1 |
future dura mater | 6.08e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.