FFCP PHASE1:Hg19::chr1:75602043..75602093,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=431707|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28838|TSSclassifier=W|UniProt=|association_with_transcript=-482bp_to_ENST00000559413_5end|coexpression_cluster_id=C53|description=CAGE_peak_1_at_LHX8_5end|id=chr1:75602043..75602093,+|ontology_enrichment_celltype=CL:0002556!2.12e-16!6;CL:0002552!6.00e-14!5;CL:0000057!7.31e-11!75;CL:0000055!9.86e-10!180;CL:0002580!1.28e-08!3|ontology_enrichment_celltype_v019=CL:0002556;5.19e-43;6!CL:0002552;3.98e-36;5!CL:0002580;3.64e-10;3!CL:0000057;4.12e-09;73!CL:0000243;4.64e-07;15!CL:0000125;4.64e-07;15|ontology_enrichment_celltype_v019_2=CL:0002556,4.34e-43,6;CL:0002552,3.45e-36,5;CL:0000057,2.68e-18,76;CL:0002580,2.62e-10,3;CL:0000243,4.72e-07,15;CL:0000125,4.72e-07,15;CL:0000030,4.72e-07,15;CL:0000339,4.72e-07,15|ontology_enrichment_development_v019=UBERON:0003099;1.53e-08;1!UBERON:0003852;1.53e-08;1!CL:0000339;4.64e-07;15|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1909;4.44e-15;2!DOID:3093;5.83e-10;11!DOID:3347;3.05e-08;1|ontology_enrichment_disease_v019_2=DOID:1909,5.71e-15,2;DOID:3093,5.97e-10,11;DOID:3347,3.06e-08,1|ontology_enrichment_uberon=UBERON:0000165!1.36e-17!28;UBERON:0000930!1.36e-17!28;UBERON:0001758!2.12e-16!6;UBERON:0003672!2.12e-16!6;UBERON:0001444!1.39e-11!48;UBERON:0003129!1.71e-11!11;UBERON:0000078!3.06e-10!18;UBERON:0000075!1.59e-09!13;UBERON:0005944!1.59e-09!13;UBERON:0004288!1.59e-09!13;UBERON:0003089!1.59e-09!13;UBERON:0000369!1.85e-09!4;UBERON:0002435!1.85e-09!4;UBERON:0000204!1.85e-09!4;UBERON:0010082!1.85e-09!4;UBERON:0003102!4.16e-09!95;UBERON:0001828!1.62e-08!8;UBERON:0000166!3.08e-08!21;UBERON:0009663!4.16e-08!7;UBERON:0005383!9.59e-08!3;UBERON:0005382!9.59e-08!3;UBERON:0000153!1.21e-07!129;UBERON:0007811!1.21e-07!129;UBERON:0000033!1.41e-07!123;UBERON:0000473!1.65e-07!8;UBERON:0004121!3.76e-07!169;UBERON:0000924!8.11e-07!173;UBERON:0006601!8.11e-07!173|ontology_enrichment_uberon_v019=UBERON:0001758;5.19e-43;6!UBERON:0003672;5.19e-43;6!UBERON:0003129;8.09e-37;7!UBERON:0011137;1.87e-31;11!UBERON:0010323;1.87e-31;11!UBERON:0000165;2.42e-29;28!UBERON:0001828;1.47e-22;8!UBERON:0000075;2.15e-21;16!UBERON:0001444;2.97e-17;48!UBERON:0000033;7.22e-16;50!UBERON:0007811;3.51e-15;52!UBERON:0003729;7.83e-14;13!UBERON:0000153;6.92e-12;54!UBERON:0001434;8.90e-11;36!UBERON:0001555;1.16e-10;54!UBERON:0000161;2.10e-09;19!UBERON:0000166;2.10e-09;19!UBERON:0000344;6.36e-09;20!UBERON:0001282;7.85e-09;1!UBERON:0009842;7.85e-09;1!UBERON:0003704;7.85e-09;1!UBERON:0001171;7.85e-09;1!UBERON:0001172;7.85e-09;1!UBERON:0005705;1.53e-08;1!UBERON:0008193;1.53e-08;1!UBERON:0010912;1.53e-08;1!UBERON:0002514;1.53e-08;1!UBERON:0003457;1.53e-08;1!UBERON:0008907;1.53e-08;1!UBERON:0008001;1.53e-08;1!UBERON:0007213;1.53e-08;1!UBERON:0009891;1.53e-08;1!UBERON:0007914;1.53e-08;1!UBERON:0007375;1.53e-08;1!UBERON:0003323;1.53e-08;1!UBERON:0010258;1.53e-08;1!UBERON:0005253;1.53e-08;1!UBERON:0007842;1.53e-08;1!UBERON:0002397;1.53e-08;1!UBERON:0003113;1.53e-08;1!UBERON:0003277;1.53e-08;1!UBERON:0001709;1.53e-08;1!UBERON:0002244;1.53e-08;1!UBERON:0005620;1.53e-08;1!UBERON:0010364;1.53e-08;1!UBERON:0004288;1.53e-08;1!UBERON:0000310;7.71e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0001758,4.34e-43,6;UBERON:0003672,4.34e-43,6;UBERON:0003129,6.93e-37,7;UBERON:0000165,9.15e-34,29;UBERON:0000930,9.15e-34,29;UBERON:0010323,1.63e-31,11;UBERON:0011137,1.32e-24,14;UBERON:0001444,1.31e-22,49;UBERON:0001828,1.34e-22,8;UBERON:0000075,1.96e-21,16;UBERON:0000033,1.76e-19,56;UBERON:0000153,2.32e-17,62;UBERON:0007811,2.32e-17,62;UBERON:0003729,7.42e-14,13;UBERON:0003102,1.99e-13,99;UBERON:0000166,2.12e-11,22;UBERON:0004121,5.52e-10,171;UBERON:0000924,5.52e-10,171;UBERON:0006601,5.52e-10,171;UBERON:0000344,6.15e-09,20;UBERON:0001282,8.15e-09,1;UBERON:0009842,8.15e-09,1;UBERON:0003704,8.15e-09,1;UBERON:0001171,8.15e-09,1;UBERON:0001172,8.15e-09,1;UBERON:0005705,1.48e-08,1;UBERON:0008193,1.48e-08,1;UBERON:0010912,1.48e-08,1;UBERON:0002514,1.48e-08,1;UBERON:0003457,1.48e-08,1;UBERON:0008907,1.48e-08,1;UBERON:0008001,1.48e-08,1;UBERON:0007213,1.48e-08,1;UBERON:0009891,1.48e-08,1;UBERON:0007914,1.48e-08,1;UBERON:0009292,1.48e-08,1;UBERON:0003099,1.48e-08,1;UBERON:0007375,1.48e-08,1;UBERON:0003323,1.48e-08,1;UBERON:0010258,1.48e-08,1;UBERON:0007842,1.48e-08,1;UBERON:0009494,1.48e-08,1;UBERON:0010042,1.48e-08,1;UBERON:0010045,1.48e-08,1;UBERON:0010259,1.48e-08,1;UBERON:0010359,1.48e-08,1;UBERON:0009526,1.48e-08,1;UBERON:0002397,1.48e-08,1;UBERON:0003113,1.48e-08,1;UBERON:0003277,1.48e-08,1;UBERON:0001709,1.48e-08,1;UBERON:0004066,1.48e-08,1;UBERON:0002244,1.48e-08,1;UBERON:0005620,1.48e-08,1;UBERON:0004362,1.48e-08,1;UBERON:0010364,1.48e-08,1;UBERON:0010046,1.48e-08,1;UBERON:0005868,1.48e-08,1;UBERON:0007238,1.48e-08,1;UBERON:0004288,1.48e-08,1;UBERON:0004068,1.48e-08,1;UBERON:0010334,1.48e-08,1;UBERON:0003852,1.48e-08,1;UBERON:0010253,1.48e-08,1;UBERON:0001007,4.35e-07,145;UBERON:0001555,4.35e-07,145;UBERON:0007026,4.35e-07,145;UBERON:0000310,6.75e-07,10;UBERON:0000161,9.26e-07,36|phase1_expression=3.08853244759946,0.642301571672949,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468642863667593,0,0,0,0,0,0,1.63323337003915,4.66770405784718,5.16628905878827,4.75201142912821,5.43987244412825,0,0,4.20840284885166,2.75260743718321,1.38532057742091,4.82875382968922,13.1789752193578,9.91571188783539,0,0,0.213557388818567,0,0,0,0,0,0,0,0.252433774244115,1.01254888506529,0,0,0,0,0,0,0,0,0.132529768321485,0,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98486246255021,1.68808170616869,0.841980283299221,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0.933118762985422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347249989866585,0.885741385813839,0.120596438625408,0,0,0,0,0,0,0,9.6850747469951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65195365854437,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0.415440338029185,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01980882368113,0,0,0,0,3.42173675768659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,69.1743174681154,0,3.03298235083296,1.14186133417987,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0,0,0,0,0,0,0,0,0,0,0.215649622793364,0,0,0,0,0,0,2.22603045457393,0,0,3.17408349321616,0,0.0642292250964595,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,1.3807198521202,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0.314231179832004,0,0,0,0,0,12.4830753268854,0,0.869291361512897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439762066981716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,1.29787968637137,0,0.109265571963696,0,0.203977659483963,20.041305394917,0,0.50141507858475,0.0757786982182394,0.803892390468535,0,0,0,0.23806443146374,0,0,0,0,0,0.217716747896961,0.342233301085281,0.336760265072938,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0|short_description=p1@LHX8}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=431707 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28838 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-482bp_to_ENST00000559413_5end | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_1_at_LHX8_5end | |||
|id=chr1:75602043..75602093,+ | |||
|ontology_enrichment_celltype=CL:0002556!2.12e-16!6;CL:0002552!6.00e-14!5;CL:0000057!7.31e-11!75;CL:0000055!9.86e-10!180;CL:0002580!1.28e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002556;5.19e-43;6!CL:0002552;3.98e-36;5!CL:0002580;3.64e-10;3!CL:0000057;4.12e-09;73!CL:0000243;4.64e-07;15!CL:0000125;4.64e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002556,4.34e-43,6;CL:0002552,3.45e-36,5;CL:0000057,2.68e-18,76;CL:0002580,2.62e-10,3;CL:0000243,4.72e-07,15;CL:0000125,4.72e-07,15;CL:0000030,4.72e-07,15;CL:0000339,4.72e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0003099;1.53e-08;1!UBERON:0003852;1.53e-08;1!CL:0000339;4.64e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;4.44e-15;2!DOID:3093;5.83e-10;11!DOID:3347;3.05e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,5.71e-15,2;DOID:3093,5.97e-10,11;DOID:3347,3.06e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000165!1.36e-17!28;UBERON:0000930!1.36e-17!28;UBERON:0001758!2.12e-16!6;UBERON:0003672!2.12e-16!6;UBERON:0001444!1.39e-11!48;UBERON:0003129!1.71e-11!11;UBERON:0000078!3.06e-10!18;UBERON:0000075!1.59e-09!13;UBERON:0005944!1.59e-09!13;UBERON:0004288!1.59e-09!13;UBERON:0003089!1.59e-09!13;UBERON:0000369!1.85e-09!4;UBERON:0002435!1.85e-09!4;UBERON:0000204!1.85e-09!4;UBERON:0010082!1.85e-09!4;UBERON:0003102!4.16e-09!95;UBERON:0001828!1.62e-08!8;UBERON:0000166!3.08e-08!21;UBERON:0009663!4.16e-08!7;UBERON:0005383!9.59e-08!3;UBERON:0005382!9.59e-08!3;UBERON:0000153!1.21e-07!129;UBERON:0007811!1.21e-07!129;UBERON:0000033!1.41e-07!123;UBERON:0000473!1.65e-07!8;UBERON:0004121!3.76e-07!169;UBERON:0000924!8.11e-07!173;UBERON:0006601!8.11e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0001758;5.19e-43;6!UBERON:0003672;5.19e-43;6!UBERON:0003129;8.09e-37;7!UBERON:0011137;1.87e-31;11!UBERON:0010323;1.87e-31;11!UBERON:0000165;2.42e-29;28!UBERON:0001828;1.47e-22;8!UBERON:0000075;2.15e-21;16!UBERON:0001444;2.97e-17;48!UBERON:0000033;7.22e-16;50!UBERON:0007811;3.51e-15;52!UBERON:0003729;7.83e-14;13!UBERON:0000153;6.92e-12;54!UBERON:0001434;8.90e-11;36!UBERON:0001555;1.16e-10;54!UBERON:0000161;2.10e-09;19!UBERON:0000166;2.10e-09;19!UBERON:0000344;6.36e-09;20!UBERON:0001282;7.85e-09;1!UBERON:0009842;7.85e-09;1!UBERON:0003704;7.85e-09;1!UBERON:0001171;7.85e-09;1!UBERON:0001172;7.85e-09;1!UBERON:0005705;1.53e-08;1!UBERON:0008193;1.53e-08;1!UBERON:0010912;1.53e-08;1!UBERON:0002514;1.53e-08;1!UBERON:0003457;1.53e-08;1!UBERON:0008907;1.53e-08;1!UBERON:0008001;1.53e-08;1!UBERON:0007213;1.53e-08;1!UBERON:0009891;1.53e-08;1!UBERON:0007914;1.53e-08;1!UBERON:0007375;1.53e-08;1!UBERON:0003323;1.53e-08;1!UBERON:0010258;1.53e-08;1!UBERON:0005253;1.53e-08;1!UBERON:0007842;1.53e-08;1!UBERON:0002397;1.53e-08;1!UBERON:0003113;1.53e-08;1!UBERON:0003277;1.53e-08;1!UBERON:0001709;1.53e-08;1!UBERON:0002244;1.53e-08;1!UBERON:0005620;1.53e-08;1!UBERON:0010364;1.53e-08;1!UBERON:0004288;1.53e-08;1!UBERON:0000310;7.71e-07;10 | |||
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|short_description=p1@LHX8 | |||
}} |
Revision as of 06:43, 12 September 2013
Short description: | p1@LHX8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LHX8_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | -482bp_to_ENST00000559413_5end |
EntrezGene: | LHX8 |
HGNC: | 28838 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of periodontium | 4.34e-43 | 6 |
fibroblast of gingiva | 3.45e-36 | 5 |
fibroblast | 2.68e-18 | 76 |
preadipocyte of the breast | 2.62e-10 | 3 |
glial cell (sensu Vertebrata) | 4.72e-07 | 15 |
glial cell | 4.72e-07 | 15 |
glioblast | 4.72e-07 | 15 |
glioblast (sensu Vertebrata) | 4.72e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
melanoma | 5.71e-15 | 2 |
nervous system cancer | 5.97e-10 | 11 |
osteosarcoma | 3.06e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.