FFCP PHASE1:Hg19::chr20:49348109..49348123,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84612|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16245|TSSclassifier=S|UniProt=Q9BYG5|association_with_transcript=28bp_to_ENST00000371610,NM_032521,uc002xvo.2_5end|coexpression_cluster_id=C262|description=CAGE_peak_1_at_PARD6B_5end|id=chr20:49348109..49348123,+|ontology_enrichment_celltype=CL:0000066!4.44e-22!254;CL:0000223!4.12e-09!59|ontology_enrichment_celltype_v019=CL:1000507;2.58e-07;10!CL:1000494;2.58e-07;10|ontology_enrichment_celltype_v019_2=CL:0000066,1.20e-20,253;CL:0000223,6.13e-09,58;CL:1000507,1.96e-07,10;CL:1000494,1.96e-07,10|ontology_enrichment_development_v019=UBERON:0001041;1.70e-12;30!UBERON:0006595;1.10e-08;86!UBERON:0003104;1.73e-08;31!UBERON:0003918;2.92e-08;10!UBERON:0007687;2.92e-08;10!UBERON:0009497;8.54e-07;13|ontology_enrichment_disease=DOID:305!6.70e-36!106;DOID:0050687!1.01e-33!143;DOID:162!5.33e-33!235;DOID:14566!1.98e-31!239;DOID:0050686!3.30e-13!137;DOID:299!1.41e-12!25;DOID:7!2.34e-09!39|ontology_enrichment_disease_v019=DOID:299;3.37e-15;25!DOID:305;2.15e-11;106!DOID:7;6.44e-09;39!DOID:0050687;6.47e-09;143!DOID:3119;9.17e-08;14!DOID:1749;5.09e-07;14|ontology_enrichment_disease_v019_2=DOID:305,6.74e-37,106;DOID:0050687,5.65e-35,143;DOID:162,6.46e-26,235;DOID:14566,1.98e-24,239;DOID:299,1.82e-15,25;DOID:7,8.21e-11,39;DOID:0050686,1.43e-09,137;DOID:3119,8.82e-08,14;DOID:1749,6.58e-07,14|ontology_enrichment_uberon=UBERON:0004119!1.40e-16!169;UBERON:0000925!1.40e-16!169;UBERON:0006595!1.40e-16!169;UBERON:0005177!4.81e-16!107;UBERON:0004921!8.79e-16!129;UBERON:0004185!8.79e-16!129;UBERON:0001007!3.01e-15!155;UBERON:0001555!3.01e-15!155;UBERON:0007026!3.01e-15!155;UBERON:0000077!1.13e-13!130;UBERON:0000466!1.73e-12!126;UBERON:0005911!3.09e-12!82;UBERON:0001041!8.54e-12!98;UBERON:0005172!9.20e-12!55;UBERON:0005173!9.20e-12!55;UBERON:0000464!5.90e-10!104;UBERON:0005409!2.75e-09!35;UBERON:0009569!3.01e-09!113;UBERON:0002113!5.89e-09!27;UBERON:0003918!5.89e-09!27;UBERON:0005095!5.89e-09!27;UBERON:0007687!5.89e-09!27;UBERON:0002417!1.36e-08!61;UBERON:0000916!1.36e-08!61;UBERON:0000489!2.18e-08!32;UBERON:0001008!2.78e-08!45;UBERON:0006554!5.23e-08!44;UBERON:0001048!1.21e-07!168;UBERON:0000949!1.64e-07!45;UBERON:0000058!2.74e-07!26;UBERON:0000160!5.79e-07!27;UBERON:0002048!7.20e-07!22;UBERON:0000117!7.20e-07!22;UBERON:0000171!7.20e-07!22;UBERON:0000170!7.20e-07!22;UBERON:0005597!7.20e-07!22;UBERON:0000118!7.20e-07!22;UBERON:0003929!7.83e-07!54|ontology_enrichment_uberon_v019=UBERON:0002113;8.61e-11;24!UBERON:0011143;8.61e-11;24!UBERON:0005172;8.69e-09;52!UBERON:0005173;8.69e-09;52!UBERON:0000489;8.87e-09;29!UBERON:0006554;3.09e-08;30!UBERON:0001008;3.09e-08;30!UBERON:0005177;1.87e-07;99!UBERON:0004211;2.58e-07;10!UBERON:0009773;2.58e-07;10!UBERON:0001231;2.58e-07;10!UBERON:0004810;2.58e-07;10!UBERON:0002294;6.02e-07;7!UBERON:0001173;6.02e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0005177,5.48e-20,101;UBERON:0005172,3.61e-14,54;UBERON:0005173,3.61e-14,54;UBERON:0009569,6.42e-13,112;UBERON:0002113,3.08e-12,26;UBERON:0003918,3.08e-12,26;UBERON:0011143,3.08e-12,26;UBERON:0005095,3.08e-12,26;UBERON:0007687,3.08e-12,26;UBERON:0004119,8.02e-12,160;UBERON:0000925,8.02e-12,160;UBERON:0006595,8.02e-12,160;UBERON:0001007,8.76e-12,145;UBERON:0001555,8.76e-12,145;UBERON:0007026,8.76e-12,145;UBERON:0002417,2.47e-11,60;UBERON:0000916,2.47e-11,60;UBERON:0005911,8.57e-11,82;UBERON:0004921,1.15e-10,118;UBERON:0000489,4.38e-10,31;UBERON:0001008,2.81e-09,48;UBERON:0006554,6.19e-09,47;UBERON:0001041,3.73e-08,87;UBERON:0000949,5.04e-08,45;UBERON:0004810,1.96e-07,10;UBERON:0003929,7.58e-07,54;UBERON:0003133,7.94e-07,48|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,1.22866968250754,1.39560233594486,2.62129646556207,1.05506791291381,0,0,0.672325146451775,0,0.730310090387373,0,0.369363174230364,0,0.313454721478088,2.57612388417951,1.23186982565596,1.75759695432724,0,0.164201178899891,0.157421562627358,0.393364276848904,0.383829398097213,0.154816123316076,0,0.90361775633475,0.369754010166788,2.63388481973026,0.995184627411951,0,0,0.401088894940283,0.217010870715852,0,0.32389366601898,0.257575567634187,0,0,0,0.232429036905685,0,0,0,0,0,0.344745680736619,0,0,0,0,0.224723484445085,0,0,0.639337125799041,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0,0,1.32171328579026,1.12101712596307,0,2.75393678159366,3.14408610199332,2.2616164889946,0,0.977766799900771,0,0,0,0.883817722424512,0.664601683750863,0,0.384273959177026,0.390178042679635,0.164437904603676,0.552700035571697,0,1.03800594213442,0.535081656179426,0,0.339928028092699,0.383220493601921,0,0.759059076058509,0.637130828648193,0,0,0,0,0,0.473554504088034,0,2.41928091869679,1.06976078313403,1.44824403882799,0,1.34140171940727,0.511450247374121,0,0,0,0,0.486634870302636,1.13441780596881,1.10864698731282,0.614843499851882,11.1332214173056,0,0.370784442784429,0,0,0,2.38490624305342,0.571994910780128,2.22874500797739,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84612 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16245 | |||
|TSSclassifier=S | |||
|UniProt=Q9BYG5 | |||
|association_with_transcript=28bp_to_ENST00000371610,NM_032521,uc002xvo.2_5end | |||
|coexpression_cluster_id=C262 | |||
|description=CAGE_peak_1_at_PARD6B_5end | |||
|id=chr20:49348109..49348123,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.44e-22!254;CL:0000223!4.12e-09!59 | |||
|ontology_enrichment_celltype_v019=CL:1000507;2.58e-07;10!CL:1000494;2.58e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.20e-20,253;CL:0000223,6.13e-09,58;CL:1000507,1.96e-07,10;CL:1000494,1.96e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.70e-12;30!UBERON:0006595;1.10e-08;86!UBERON:0003104;1.73e-08;31!UBERON:0003918;2.92e-08;10!UBERON:0007687;2.92e-08;10!UBERON:0009497;8.54e-07;13 | |||
|ontology_enrichment_disease=DOID:305!6.70e-36!106;DOID:0050687!1.01e-33!143;DOID:162!5.33e-33!235;DOID:14566!1.98e-31!239;DOID:0050686!3.30e-13!137;DOID:299!1.41e-12!25;DOID:7!2.34e-09!39 | |||
|ontology_enrichment_disease_v019=DOID:299;3.37e-15;25!DOID:305;2.15e-11;106!DOID:7;6.44e-09;39!DOID:0050687;6.47e-09;143!DOID:3119;9.17e-08;14!DOID:1749;5.09e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.74e-37,106;DOID:0050687,5.65e-35,143;DOID:162,6.46e-26,235;DOID:14566,1.98e-24,239;DOID:299,1.82e-15,25;DOID:7,8.21e-11,39;DOID:0050686,1.43e-09,137;DOID:3119,8.82e-08,14;DOID:1749,6.58e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.40e-16!169;UBERON:0000925!1.40e-16!169;UBERON:0006595!1.40e-16!169;UBERON:0005177!4.81e-16!107;UBERON:0004921!8.79e-16!129;UBERON:0004185!8.79e-16!129;UBERON:0001007!3.01e-15!155;UBERON:0001555!3.01e-15!155;UBERON:0007026!3.01e-15!155;UBERON:0000077!1.13e-13!130;UBERON:0000466!1.73e-12!126;UBERON:0005911!3.09e-12!82;UBERON:0001041!8.54e-12!98;UBERON:0005172!9.20e-12!55;UBERON:0005173!9.20e-12!55;UBERON:0000464!5.90e-10!104;UBERON:0005409!2.75e-09!35;UBERON:0009569!3.01e-09!113;UBERON:0002113!5.89e-09!27;UBERON:0003918!5.89e-09!27;UBERON:0005095!5.89e-09!27;UBERON:0007687!5.89e-09!27;UBERON:0002417!1.36e-08!61;UBERON:0000916!1.36e-08!61;UBERON:0000489!2.18e-08!32;UBERON:0001008!2.78e-08!45;UBERON:0006554!5.23e-08!44;UBERON:0001048!1.21e-07!168;UBERON:0000949!1.64e-07!45;UBERON:0000058!2.74e-07!26;UBERON:0000160!5.79e-07!27;UBERON:0002048!7.20e-07!22;UBERON:0000117!7.20e-07!22;UBERON:0000171!7.20e-07!22;UBERON:0000170!7.20e-07!22;UBERON:0005597!7.20e-07!22;UBERON:0000118!7.20e-07!22;UBERON:0003929!7.83e-07!54 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;8.61e-11;24!UBERON:0011143;8.61e-11;24!UBERON:0005172;8.69e-09;52!UBERON:0005173;8.69e-09;52!UBERON:0000489;8.87e-09;29!UBERON:0006554;3.09e-08;30!UBERON:0001008;3.09e-08;30!UBERON:0005177;1.87e-07;99!UBERON:0004211;2.58e-07;10!UBERON:0009773;2.58e-07;10!UBERON:0001231;2.58e-07;10!UBERON:0004810;2.58e-07;10!UBERON:0002294;6.02e-07;7!UBERON:0001173;6.02e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,5.48e-20,101;UBERON:0005172,3.61e-14,54;UBERON:0005173,3.61e-14,54;UBERON:0009569,6.42e-13,112;UBERON:0002113,3.08e-12,26;UBERON:0003918,3.08e-12,26;UBERON:0011143,3.08e-12,26;UBERON:0005095,3.08e-12,26;UBERON:0007687,3.08e-12,26;UBERON:0004119,8.02e-12,160;UBERON:0000925,8.02e-12,160;UBERON:0006595,8.02e-12,160;UBERON:0001007,8.76e-12,145;UBERON:0001555,8.76e-12,145;UBERON:0007026,8.76e-12,145;UBERON:0002417,2.47e-11,60;UBERON:0000916,2.47e-11,60;UBERON:0005911,8.57e-11,82;UBERON:0004921,1.15e-10,118;UBERON:0000489,4.38e-10,31;UBERON:0001008,2.81e-09,48;UBERON:0006554,6.19e-09,47;UBERON:0001041,3.73e-08,87;UBERON:0000949,5.04e-08,45;UBERON:0004810,1.96e-07,10;UBERON:0003929,7.58e-07,54;UBERON:0003133,7.94e-07,48 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,1.22866968250754,1.39560233594486,2.62129646556207,1.05506791291381,0,0,0.672325146451775,0,0.730310090387373,0,0.369363174230364,0,0.313454721478088,2.57612388417951,1.23186982565596,1.75759695432724,0,0.164201178899891,0.157421562627358,0.393364276848904,0.383829398097213,0.154816123316076,0,0.90361775633475,0.369754010166788,2.63388481973026,0.995184627411951,0,0,0.401088894940283,0.217010870715852,0,0.32389366601898,0.257575567634187,0,0,0,0.232429036905685,0,0,0,0,0,0.344745680736619,0,0,0,0,0.224723484445085,0,0,0.639337125799041,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0,0,1.32171328579026,1.12101712596307,0,2.75393678159366,3.14408610199332,2.2616164889946,0,0.977766799900771,0,0,0,0.883817722424512,0.664601683750863,0,0.384273959177026,0.390178042679635,0.164437904603676,0.552700035571697,0,1.03800594213442,0.535081656179426,0,0.339928028092699,0.383220493601921,0,0.759059076058509,0.637130828648193,0,0,0,0,0,0.473554504088034,0,2.41928091869679,1.06976078313403,1.44824403882799,0,1.34140171940727,0.511450247374121,0,0,0,0,0.486634870302636,1.13441780596881,1.10864698731282,0.614843499851882,11.1332214173056,0,0.370784442784429,0,0,0,2.38490624305342,0.571994910780128,2.22874500797739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0.436094052142534,0,0,0.132409180813219,0,0.709336764396714,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51239109112286,0,1.14721838155602,2.31750041646231,3.97589304964456,3.137236457477,3.73179798055334,2.27088765788066,2.18986415445498,0,0.643240938192885,0,0,0,1.53798840051797,1.18009283054671,0.482022059766964,0.441175890929576,0.871517776369625,0,0.674156540800822,0.196221465125346,0.38474715694639,0,0,2.057870056657,0,3.80265104465493,0,0.590789906681404,0.441463099414651,67.8896180757987,0.514703430895577,0.329250856225877,1.1240175325762,0.703702806881416,1.11106134190236,0,0,0,0.463721619900307,0.117408694235822,0,0,0,165.152719173488,146.801133718223,0,0.234004265139238,0.148631162288728,0,0,0.567100388969546,0.358234090811393,1.45316969256981,0.766765358330422,0,0,0,0.144119953416961,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.710783897485092,0,15.3734082300389,5.22920075160176,9.9972991182057,0,0,0,0,0,0,0,0,0,4.48340575974109,1.18218456121156,1.72502059887614,2.18183161675572,0.508189248444927,0,0,0.335032530668698,1.91381625495949,0.749007023947182,0,0.414415513436035,0.12269149171914,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0.343143423810856,0.620304078368662,0.215714200818617,1.38745825144478,10.9125925720653,1.66435439510497,0.604780586659361,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,59.5837086486698,0.200506470303285,0.644566922551274,0.229628896329213,0.182091168006717,0,6.31679458070376,11.4752852285578,6.27479815341484,2.92278449306521,5.80533958910816,1.13733384070897,0,0.863663664408557,0,4.87703587578935,7.02365683396795,8.92066955657634,11.6350641250021,4.70136984916574,0,0.261435451024901,11.7967057553539,9.51242472529147,9.11059505060049,15.0439877005675,0.27470839445503,0.247528499761764,0.574265537996172,0,0,0,0,0,0,0,0,0,0,1.32227932288782,0.576570202095319,2.55225424989168,1.2138933702666,0,0,0,0.616067160352178,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.422215270595328,0.329294892959902,0,0.349934720244983,0.577332676353072,1.34060455107157,1.08890984861323,14.9688643235079,0.86101074534246,0,0.886860307073351,0.689170200620878,0,0,0,0.238231775457789,0,0,0,0,15.809962526866,1.92495971052672,5.63592496756373,0.371606350251437,0.721346064882224,1.84968792705877,0.956557636372934,0.199579371432817,0.191505370132367,0,0,0.280797178113459,0,0.156679895773023,2.50634477090067,0,0,0,0.425846237690326,0.687010689511529,0,0,0.333698283423817,0,0.556812347790485,1.23087398947712,1.08182271390393,0,2.81974010175699,8.42132431836989,1.02555725490326,0.970884173996107,0.557216921387392,4.2620422020962,42.2577737985711,7.42411702081597,17.8153207217555,0,0.422008249231538,5.00889172603077,2.30725423917463,0.844501632511974,0.796991953004279,0.828851746593443,5.03865495708552,5.31797149011205,0.738508832766417,0.311039587661807,16.1763032065188,20.4084139130194,0.511572370226872,0.986434056369336,0,0,0,0.0927680981618513,0,356.78603268677,5.16013999977555,4.34999745260876,0.455173793141999,5.08507300585533,21.0385036773463,1.03423011972439,5.83209226766509,0.520874984799877,0,0.60298219312704,0,0.884634079449797,0,0.87754158861589,0.653630781113941,5.57694977114413,1.38510465306835,12.7615102548641,4.6112780877612,4.66739750930815,25.6407797735939,14.0360510282045,3.48070854927077,27.717808352969,2.04386596391473,0.156980256395025,0.498635045700469,2.25595660617181,2.5488129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| |||
|short_description=p1@PARD6B | |||
}} |
Revision as of 09:06, 12 September 2013
Short description: | p1@PARD6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_PARD6B_5end |
Coexpression cluster: | C262_breast_MCF7_skeletal_Reticulocytes_mucinous_hepatoblastoma_Wilms |
Association with transcript: | 28bp_to_ENST00000371610, NM_032521, uc002xvo.2_5end |
EntrezGene: | PARD6B |
HGNC: | 16245 |
UniProt: | Q9BYG5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.20e-20 | 253 |
endodermal cell | 6.13e-09 | 58 |
kidney tubule cell | 1.96e-07 | 10 |
nephron tubule epithelial cell | 1.96e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 5.48e-20 | 101 |
abdomen element | 3.61e-14 | 54 |
abdominal segment element | 3.61e-14 | 54 |
subdivision of trunk | 6.42e-13 | 112 |
kidney | 3.08e-12 | 26 |
kidney mesenchyme | 3.08e-12 | 26 |
upper urinary tract | 3.08e-12 | 26 |
kidney rudiment | 3.08e-12 | 26 |
kidney field | 3.08e-12 | 26 |
endoderm-derived structure | 8.02e-12 | 160 |
endoderm | 8.02e-12 | 160 |
presumptive endoderm | 8.02e-12 | 160 |
digestive system | 8.76e-12 | 145 |
digestive tract | 8.76e-12 | 145 |
primitive gut | 8.76e-12 | 145 |
abdominal segment of trunk | 2.47e-11 | 60 |
abdomen | 2.47e-11 | 60 |
endo-epithelium | 8.57e-11 | 82 |
subdivision of digestive tract | 1.15e-10 | 118 |
cavitated compound organ | 4.38e-10 | 31 |
renal system | 2.81e-09 | 48 |
urinary system structure | 6.19e-09 | 47 |
foregut | 3.73e-08 | 87 |
endocrine system | 5.04e-08 | 45 |
nephron tubule epithelium | 1.96e-07 | 10 |
gut epithelium | 7.58e-07 | 54 |
reproductive organ | 7.94e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.74e-37 | 106 |
cell type cancer | 5.65e-35 | 143 |
cancer | 6.46e-26 | 235 |
disease of cellular proliferation | 1.98e-24 | 239 |
adenocarcinoma | 1.82e-15 | 25 |
disease of anatomical entity | 8.21e-11 | 39 |
organ system cancer | 1.43e-09 | 137 |
gastrointestinal system cancer | 8.82e-08 | 14 |
squamous cell carcinoma | 6.58e-07 | 14 |
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