FFCP PHASE1:Mm9::chr19:55942681..55942684,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=88|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:55942681..55942684,+|id=chr19:55942681..55942684,+|ontology_enrichment_celltype=CL:0002563!1.57e-24!9;CL:0002251!1.57e-24!9;CL:0000239!1.73e-17!6;CL:0000677!1.73e-17!6;CL:0000212!1.73e-17!6;CL:0000584!1.73e-17!6;CL:0000075!7.06e-15!7;CL:0000066!3.94e-14!25;CL:0002076!5.28e-14!15;CL:0000223!4.64e-10!20;CL:0000473!2.43e-09!3;CL:0000627!2.43e-09!3;CL:0000682!2.43e-09!3;CL:0002250!1.26e-08!3|ontology_enrichment_celltype_v019_2=CL:0002563,2.25e-35,9;CL:0002251,2.25e-35,9;CL:0000239,6.96e-31,6;CL:0000677,6.96e-31,6;CL:0000584,6.96e-31,6;CL:0000075,1.99e-26,7;CL:0000066,4.05e-23,25;CL:0002076,7.00e-21,15;CL:0000682,7.32e-16,3;CL:0000223,1.98e-15,20;CL:0002250,2.40e-07,3;CL:0000473,4.42e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!4.70e-39!15;UBERON:0001242!2.72e-34!13;UBERON:0000060!2.72e-34!13;UBERON:0001262!2.72e-34!13;UBERON:0004786!2.72e-34!13;UBERON:0003350!1.57e-24!9;UBERON:0004808!1.57e-24!9;UBERON:0001277!1.57e-24!9;UBERON:0000160!3.07e-23!43;UBERON:0004923!4.40e-23!24;UBERON:0000485!9.55e-20!11;UBERON:0005409!5.10e-19!59;UBERON:0001007!2.59e-10!128;UBERON:0001555!2.59e-10!128;UBERON:0007026!2.59e-10!128;UBERON:0004119!4.63e-10!130;UBERON:0000925!4.63e-10!130;UBERON:0006595!4.63e-10!130;UBERON:0000331!6.51e-09!3;UBERON:0002116!6.51e-09!3;UBERON:0001204!6.51e-09!3;UBERON:0001168!6.51e-09!3;UBERON:0004921!1.43e-08!126;UBERON:0004185!1.43e-08!126|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.65e-46,15;UBERON:0001242,3.80e-45,13;UBERON:0001262,3.80e-45,13;UBERON:0004786,3.80e-45,13;UBERON:0003350,2.25e-35,9;UBERON:0004808,2.25e-35,9;UBERON:0001277,2.25e-35,9;UBERON:0000160,2.91e-29,31;UBERON:0000485,8.59e-29,11;UBERON:0004923,3.00e-28,24;UBERON:0005409,1.24e-18,47;UBERON:0000331,4.47e-15,3;UBERON:0002116,4.47e-15,3;UBERON:0001204,4.47e-15,3;UBERON:0001168,4.47e-15,3;UBERON:0002108,1.89e-11,4;UBERON:0001007,2.19e-07,116;UBERON:0001555,2.19e-07,116;UBERON:0007026,2.19e-07,116;UBERON:0004119,3.20e-07,118;UBERON:0000925,3.20e-07,118;UBERON:0006595,3.20e-07,118|phase1_expression=0,11.8651638597383,11.8299802241279,30.246421130683,38.0680754759224,3.3575854382378,4.67225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95995453676044,1.60586496747019,9.18771142584032,3.4460959692726,4.09395342103189,1.71021077510736,1.51218077855958,3.76941868114018,0,0,0,2.3108129580102,0.664938581433969,1.63335485009895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0,0,1.27728527604296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.991256348951394,1.85115396664481,0,0,0,0,0,0,1.42358718463353,0,0,0,0.19496408711912,0,0.864552199498777,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.582961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0,0,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr19:55942681..55942684,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=88 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:55942681..55942684,+ | |||
|id=chr19:55942681..55942684,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.57e-24!9;CL:0002251!1.57e-24!9;CL:0000239!1.73e-17!6;CL:0000677!1.73e-17!6;CL:0000212!1.73e-17!6;CL:0000584!1.73e-17!6;CL:0000075!7.06e-15!7;CL:0000066!3.94e-14!25;CL:0002076!5.28e-14!15;CL:0000223!4.64e-10!20;CL:0000473!2.43e-09!3;CL:0000627!2.43e-09!3;CL:0000682!2.43e-09!3;CL:0002250!1.26e-08!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.25e-35,9;CL:0002251,2.25e-35,9;CL:0000239,6.96e-31,6;CL:0000677,6.96e-31,6;CL:0000584,6.96e-31,6;CL:0000075,1.99e-26,7;CL:0000066,4.05e-23,25;CL:0002076,7.00e-21,15;CL:0000682,7.32e-16,3;CL:0000223,1.98e-15,20;CL:0002250,2.40e-07,3;CL:0000473,4.42e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!4.70e-39!15;UBERON:0001242!2.72e-34!13;UBERON:0000060!2.72e-34!13;UBERON:0001262!2.72e-34!13;UBERON:0004786!2.72e-34!13;UBERON:0003350!1.57e-24!9;UBERON:0004808!1.57e-24!9;UBERON:0001277!1.57e-24!9;UBERON:0000160!3.07e-23!43;UBERON:0004923!4.40e-23!24;UBERON:0000485!9.55e-20!11;UBERON:0005409!5.10e-19!59;UBERON:0001007!2.59e-10!128;UBERON:0001555!2.59e-10!128;UBERON:0007026!2.59e-10!128;UBERON:0004119!4.63e-10!130;UBERON:0000925!4.63e-10!130;UBERON:0006595!4.63e-10!130;UBERON:0000331!6.51e-09!3;UBERON:0002116!6.51e-09!3;UBERON:0001204!6.51e-09!3;UBERON:0001168!6.51e-09!3;UBERON:0004921!1.43e-08!126;UBERON:0004185!1.43e-08!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.65e-46,15;UBERON:0001242,3.80e-45,13;UBERON:0001262,3.80e-45,13;UBERON:0004786,3.80e-45,13;UBERON:0003350,2.25e-35,9;UBERON:0004808,2.25e-35,9;UBERON:0001277,2.25e-35,9;UBERON:0000160,2.91e-29,31;UBERON:0000485,8.59e-29,11;UBERON:0004923,3.00e-28,24;UBERON:0005409,1.24e-18,47;UBERON:0000331,4.47e-15,3;UBERON:0002116,4.47e-15,3;UBERON:0001204,4.47e-15,3;UBERON:0001168,4.47e-15,3;UBERON:0002108,1.89e-11,4;UBERON:0001007,2.19e-07,116;UBERON:0001555,2.19e-07,116;UBERON:0007026,2.19e-07,116;UBERON:0004119,3.20e-07,118;UBERON:0000925,3.20e-07,118;UBERON:0006595,3.20e-07,118 | |||
|phase1_expression=0,11.8651638597383,11.8299802241279,30.246421130683,38.0680754759224,3.3575854382378,4.67225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95995453676044,1.60586496747019,9.18771142584032,3.4460959692726,4.09395342103189,1.71021077510736,1.51218077855958,3.76941868114018,0,0,0,2.3108129580102,0.664938581433969,1.63335485009895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0,0,1.27728527604296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.991256348951394,1.85115396664481,0,0,0,0,0,0,1.42358718463353,0,0,0,0.19496408711912,0,0.864552199498777,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.582961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0,0,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:55942681..55942684,+ | |||
}} |
Revision as of 18:07, 13 September 2013
Short description: | p@chr19:55942681..55942684, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:55942681..55942684, + |
Coexpression cluster: | MCL_coexpression_mm9:88 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.25e-35 | 9 |
epithelial cell of alimentary canal | 2.25e-35 | 9 |
brush border epithelial cell | 6.96e-31 | 6 |
gut absorptive cell | 6.96e-31 | 6 |
enterocyte | 6.96e-31 | 6 |
columnar/cuboidal epithelial cell | 1.99e-26 | 7 |
epithelial cell | 4.05e-23 | 25 |
endo-epithelial cell | 7.00e-21 | 15 |
M cell of gut | 7.32e-16 | 3 |
endodermal cell | 1.98e-15 | 20 |
intestinal crypt stem cell | 2.40e-07 | 3 |
defensive cell | 4.42e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 3.65e-46 | 15 |
intestinal mucosa | 3.80e-45 | 13 |
wall of intestine | 3.80e-45 | 13 |
gastrointestinal system mucosa | 3.80e-45 | 13 |
epithelium of mucosa | 2.25e-35 | 9 |
gastrointestinal system epithelium | 2.25e-35 | 9 |
intestinal epithelium | 2.25e-35 | 9 |
intestine | 2.91e-29 | 31 |
simple columnar epithelium | 8.59e-29 | 11 |
organ component layer | 3.00e-28 | 24 |
gastrointestinal system | 1.24e-18 | 47 |
ileal mucosa | 4.47e-15 | 3 |
ileum | 4.47e-15 | 3 |
mucosa of small intestine | 4.47e-15 | 3 |
wall of small intestine | 4.47e-15 | 3 |
small intestine | 1.89e-11 | 4 |
digestive system | 2.19e-07 | 116 |
digestive tract | 2.19e-07 | 116 |
primitive gut | 2.19e-07 | 116 |
endoderm-derived structure | 3.20e-07 | 118 |
endoderm | 3.20e-07 | 118 |
presumptive endoderm | 3.20e-07 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.