FFCP PHASE1:Hg19::chr10:54789777..54789792,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_at_chr10:54789777..54789792,- | |||
|id=chr10:54789777..54789792,- | |||
|ontology_enrichment_celltype=CL:0002149!1.70e-16!6;CL:0002255!1.70e-16!6;CL:1000507!2.50e-10!12;CL:1000494!2.50e-10!12;CL:0000239!5.64e-09!3;CL:1000615!5.64e-09!3;CL:0002306!5.64e-09!3;CL:1000449!1.87e-07!16;CL:0002681!3.95e-07!13;CL:0002584!3.95e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002149;1.10e-22;6!CL:0002255;1.10e-22;6!CL:1000507;8.71e-19;10!CL:1000494;8.71e-19;10!CL:0000239;1.73e-16;3!CL:1000615;1.73e-16;3!CL:0002306;1.73e-16;3!CL:0002681;1.43e-15;12!CL:0002584;1.43e-15;12!CL:1000449;2.38e-12;15!CL:1000497;7.84e-11;17!CL:0002518;7.84e-11;17!CL:0000313;3.32e-07;1!CL:0000817;4.97e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,7.63e-23,6;CL:0002255,7.63e-23,6;CL:1000507,6.87e-19,10;CL:1000494,6.87e-19,10;CL:0000239,1.29e-16,3;CL:1000615,1.29e-16,3;CL:0002306,1.29e-16,3;CL:0002681,1.18e-15,12;CL:0002584,1.18e-15,12;CL:1000449,2.04e-12,15;CL:1000497,6.86e-11,17;CL:0002518,6.86e-11,17;CL:0000313,3.32e-07,1;CL:0002076,4.05e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0005795;2.09e-13;10 | |||
|ontology_enrichment_disease=DOID:3001!1.70e-16!6;DOID:120!1.92e-13!27;DOID:299!4.03e-13!25;DOID:193!2.68e-12!29 | |||
|ontology_enrichment_disease_v019=DOID:3001;1.10e-22;6!DOID:299;3.13e-16;25!DOID:120;3.77e-09;27!DOID:193;1.86e-08;29!DOID:3371;2.95e-07;1!DOID:4549;2.95e-07;1!DOID:5861;2.95e-07;1!DOID:6496;2.95e-07;1!DOID:2152;3.32e-07;1!DOID:2355;8.51e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,7.63e-23,6;DOID:299,2.75e-16,25;DOID:120,3.37e-09,27;DOID:193,1.68e-08,29;DOID:3371,2.95e-07,1;DOID:4549,2.95e-07,1;DOID:5861,2.95e-07,1;DOID:6496,2.95e-07,1;DOID:2152,3.32e-07,1;DOID:2355,9.79e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004175!1.29e-12!25;UBERON:0005156!2.39e-12!59;UBERON:0000990!2.39e-12!59;UBERON:0005795!2.58e-12!22;UBERON:0003133!1.68e-11!48;UBERON:0003100!1.00e-10!41;UBERON:0000995!1.01e-10!21;UBERON:0003134!1.26e-10!37;UBERON:0000474!1.26e-10!37;UBERON:0009773!2.50e-10!12;UBERON:0001231!2.50e-10!12;UBERON:0004810!2.50e-10!12;UBERON:0003975!3.89e-10!22;UBERON:0002113!5.09e-10!27;UBERON:0003918!5.09e-10!27;UBERON:0005095!5.09e-10!27;UBERON:0007687!5.09e-10!27;UBERON:0000489!1.40e-09!32;UBERON:0006853!5.64e-09!3;UBERON:0007685!5.64e-09!3;UBERON:0004134!5.64e-09!3;UBERON:0006555!6.08e-09!17;UBERON:0005103!6.08e-09!17;UBERON:0000083!6.08e-09!17;UBERON:0009201!6.08e-09!17;UBERON:0004819!6.08e-09!17;UBERON:0006553!6.08e-09!17;UBERON:0003074!6.08e-09!17;UBERON:0003060!6.08e-09!17;UBERON:0006554!1.32e-08!44;UBERON:0000080!2.31e-08!18;UBERON:0002120!2.31e-08!18;UBERON:0004875!2.31e-08!18;UBERON:0005721!2.31e-08!18;UBERON:0005754!2.31e-08!18;UBERON:0007297!2.31e-08!18;UBERON:0001008!2.42e-08!45;UBERON:0003064!1.42e-07!37;UBERON:0001851!1.65e-07!16;UBERON:0004211!1.87e-07!16;UBERON:0001285!1.87e-07!16;UBERON:0007684!1.87e-07!16;UBERON:0003220!1.87e-07!16;UBERON:0004208!1.87e-07!16;UBERON:0004876!2.22e-07!20;UBERON:0001225!3.95e-07!13;UBERON:0008987!3.95e-07!13;UBERON:0003887!5.84e-07!21;UBERON:0000341!7.45e-07!2;UBERON:0000058!9.21e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;8.71e-19;10!UBERON:0009773;8.71e-19;10!UBERON:0001231;8.71e-19;10!UBERON:0004810;8.71e-19;10!UBERON:0002113;7.57e-17;24!UBERON:0011143;7.57e-17;24!UBERON:0006853;1.73e-16;3!UBERON:0007685;1.73e-16;3!UBERON:0004134;1.73e-16;3!UBERON:0001225;1.43e-15;12!UBERON:0008987;1.43e-15;12!UBERON:0000489;1.11e-13;29!UBERON:0006554;3.55e-13;30!UBERON:0001008;3.55e-13;30!UBERON:0001851;2.38e-12;15!UBERON:0006555;2.38e-12;15!UBERON:0000353;2.38e-12;15!UBERON:0004819;2.38e-12;15!UBERON:0001285;2.38e-12;15!UBERON:0007684;2.38e-12;15!UBERON:0000341;3.26e-12;2!UBERON:0004175;9.91e-12;21!UBERON:0000995;5.61e-11;17!UBERON:0003975;2.46e-10;18!UBERON:0003134;1.50e-08;33!UBERON:0000474;9.34e-08;37!UBERON:0004911;3.32e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,6.87e-19,10;UBERON:0006853,1.29e-16,3;UBERON:0007685,1.29e-16,3;UBERON:0004134,1.29e-16,3;UBERON:0001225,1.18e-15,12;UBERON:0008987,1.18e-15,12;UBERON:0002113,1.71e-15,26;UBERON:0003918,1.71e-15,26;UBERON:0011143,1.71e-15,26;UBERON:0005095,1.71e-15,26;UBERON:0007687,1.71e-15,26;UBERON:0000489,9.47e-13,31;UBERON:0001851,2.04e-12,15;UBERON:0004211,2.04e-12,15;UBERON:0009773,2.04e-12,15;UBERON:0000353,2.04e-12,15;UBERON:0001231,2.04e-12,15;UBERON:0001285,2.04e-12,15;UBERON:0007684,2.04e-12,15;UBERON:0004208,2.04e-12,15;UBERON:0000341,2.53e-12,2;UBERON:0006555,1.32e-11,16;UBERON:0004819,1.32e-11,16;UBERON:0006554,8.88e-10,47;UBERON:0004175,1.00e-09,25;UBERON:0001008,1.55e-09,48;UBERON:0000995,8.04e-09,21;UBERON:0005795,2.15e-08,22;UBERON:0003975,2.15e-08,22;UBERON:0003134,3.03e-08,37;UBERON:0000474,3.03e-08,37;UBERON:0003133,1.23e-07,48;UBERON:0005156,2.27e-07,59;UBERON:0000990,2.27e-07,59;UBERON:0003100,2.52e-07,41;UBERON:0004911,3.32e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1434978119451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.69716365721711,0.414644220061482,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59884970106048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,2.1754700926492,0,0,0,0,0,3.60959690325929,2.0794141018192,0,0,0.422206515571503,0,0,0,0,1.89662506280697,0,2.54876273045038,1.66215201785745,1.79099803777743,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,1.49553699578462,0,0,0,6.78065300989291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.849523652246594,0,0,0,0,0,0,0,0.222617410045812,0,1.68900326502395,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349839999984783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769502585037971,0,2.76676685265672,0.269272933229316,0.54323685961004,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,2.61172493054636,2.68570835724488,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18375320854817,0,0,0,0,0,0,0,0,0,2.84609546029793,0.693373365065693,3.47119476670262,0,0.0870592065804026,0.52418000472609,0,0,0,0,0,112.438305404971,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,2.45552662990775,0,0,0,0,0,0,0,0,0,19.5438154102011,46.9993109689583,0,0.537862017998534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40963004463334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0.150257608997218,0,0,0,0.322231671127465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03328987796489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35378591028663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0.222462803784138,0.078493092850514,0,9.24898138935504,0,0,0,0,0,7.43945122356002,0,0,0,0,0,0.430227358820278,0.118332000730565,0,0,2.52017555398455,3.41227024230752,1.91107787795487,39.0375456974295,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,1.41095188908457,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.833565680400634,0,0,0,2.98527574661373,8.09419066976717,0,0,0,30.9325189231881,14.3503204160336,0,0,0,0.143444410785353,0,0,0,0,0,0,1.4668973301944,0.813792356631477,0,0,0.320568492303233 | |||
|short_description=p@chr10:54789777..54789792,- | |||
}} |
Revision as of 02:52, 11 January 2014
Short description: | p@chr10:54789777..54789792, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:54789777..54789792, - |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 7.63e-23 | 6 |
stromal cell of endometrium | 7.63e-23 | 6 |
kidney tubule cell | 6.87e-19 | 10 |
nephron tubule epithelial cell | 6.87e-19 | 10 |
brush border epithelial cell | 1.29e-16 | 3 |
kidney cortex tubule cell | 1.29e-16 | 3 |
epithelial cell of proximal tubule | 1.29e-16 | 3 |
kidney cortical cell | 1.18e-15 | 12 |
renal cortical epithelial cell | 1.18e-15 | 12 |
epithelial cell of nephron | 2.04e-12 | 15 |
kidney cell | 6.86e-11 | 17 |
kidney epithelial cell | 6.86e-11 | 17 |
serous secreting cell | 3.32e-07 | 1 |
endo-epithelial cell | 4.05e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 6.87e-19 | 10 |
renal cortex tubule | 1.29e-16 | 3 |
region of nephron tubule | 1.29e-16 | 3 |
proximal tubule | 1.29e-16 | 3 |
cortex of kidney | 1.18e-15 | 12 |
renal parenchyma | 1.18e-15 | 12 |
kidney | 1.71e-15 | 26 |
kidney mesenchyme | 1.71e-15 | 26 |
upper urinary tract | 1.71e-15 | 26 |
kidney rudiment | 1.71e-15 | 26 |
kidney field | 1.71e-15 | 26 |
cavitated compound organ | 9.47e-13 | 31 |
cortex | 2.04e-12 | 15 |
nephron epithelium | 2.04e-12 | 15 |
renal tubule | 2.04e-12 | 15 |
parenchyma | 2.04e-12 | 15 |
nephron tubule | 2.04e-12 | 15 |
nephron | 2.04e-12 | 15 |
uriniferous tubule | 2.04e-12 | 15 |
nephrogenic mesenchyme | 2.04e-12 | 15 |
throat | 2.53e-12 | 2 |
excretory tube | 1.32e-11 | 16 |
kidney epithelium | 1.32e-11 | 16 |
urinary system structure | 8.88e-10 | 47 |
internal genitalia | 1.00e-09 | 25 |
renal system | 1.55e-09 | 48 |
uterus | 8.04e-09 | 21 |
embryonic uterus | 2.15e-08 | 22 |
internal female genitalia | 2.15e-08 | 22 |
female reproductive organ | 3.03e-08 | 37 |
female reproductive system | 3.03e-08 | 37 |
reproductive organ | 1.23e-07 | 48 |
reproductive structure | 2.27e-07 | 59 |
reproductive system | 2.27e-07 | 59 |
female organism | 2.52e-07 | 41 |
epithelium of female gonad | 3.32e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 7.63e-23 | 6 |
adenocarcinoma | 2.75e-16 | 25 |
female reproductive organ cancer | 3.37e-09 | 27 |
reproductive organ cancer | 1.68e-08 | 29 |
chondrosarcoma | 2.95e-07 | 1 |
extraosseous chondrosarcoma | 2.95e-07 | 1 |
myxoid chondrosarcoma | 2.95e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 2.95e-07 | 1 |
ovary epithelial cancer | 3.32e-07 | 1 |
anemia | 9.79e-07 | 1 |