FFCP PHASE1:Hg19::chr12:25205628..25205657,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4033 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6690 | |||
|TSSclassifier=strong | |||
|UniProt=G3V2F6 | |||
|association_with_transcript=0bp_to_ENST00000554942_5end | |||
|coexpression_cluster_id=C2203 | |||
|description=CAGE_peak_2_at_LRMP_5end | |||
|id=chr12:25205628..25205657,+ | |||
|ontology_enrichment_celltype=CL:0000037!2.08e-80!172;CL:0000566!2.08e-80!172;CL:0002032!1.68e-75!165;CL:0000837!1.68e-75!165;CL:0000988!1.17e-73!182;CL:0000738!6.94e-67!140;CL:0002031!3.52e-55!124;CL:0002087!7.54e-53!119;CL:0000763!8.42e-53!112;CL:0000049!8.42e-53!112;CL:0000766!3.16e-40!76;CL:0000557!1.29e-35!71;CL:0000839!1.78e-34!70;CL:0002009!2.35e-32!65;CL:0002194!4.43e-31!63;CL:0000576!4.43e-31!63;CL:0000040!4.43e-31!63;CL:0000559!4.43e-31!63;CL:0002057!2.44e-28!42;CL:0000860!7.42e-26!45;CL:0000945!1.75e-19!24;CL:0000826!1.75e-19!24;CL:0000542!1.09e-18!53;CL:0000051!1.09e-18!53;CL:0000838!5.18e-18!52;CL:0000236!1.06e-12!14;CL:0000134!7.67e-11!358;CL:0002320!9.32e-10!365;CL:0002393!6.50e-08!9;CL:0002397!6.50e-08!9;CL:0000094!1.04e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.14e-23;33!CL:0002057;5.14e-23;33!CL:0000576;5.48e-23;48!CL:0000945;1.90e-22;24!CL:0000473;5.38e-22;39!CL:0000234;5.38e-22;39!CL:0000766;3.55e-21;69!CL:0000763;3.73e-18;100!CL:0000738;7.70e-17;136!CL:0002087;1.03e-16;104!CL:0000988;9.48e-14;177!CL:0000236;1.07e-13;13!CL:0000542;7.24e-11;53!CL:0000094;1.02e-08;8!CL:0000451;6.53e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.51e-88,168;CL:0002032,1.48e-82,161;CL:0000837,1.48e-82,161;CL:0000988,1.00e-80,177;CL:0000738,2.32e-75,136;CL:0000763,3.30e-62,108;CL:0000049,3.30e-62,108;CL:0002031,8.05e-62,120;CL:0002087,3.95e-59,115;CL:0000766,9.26e-51,72;CL:0000557,3.18e-45,67;CL:0000839,7.74e-44,66;CL:0002009,2.07e-41,61;CL:0002194,6.69e-40,59;CL:0000576,6.69e-40,59;CL:0000040,6.69e-40,59;CL:0000559,6.69e-40,59;CL:0000473,6.23e-36,48;CL:0000234,6.23e-36,48;CL:0000860,9.58e-33,42;CL:0002057,9.58e-33,42;CL:0000945,2.00e-22,24;CL:0000826,2.00e-22,24;CL:0000542,4.32e-17,53;CL:0000051,4.32e-17,53;CL:0000838,2.32e-16,52;CL:0000134,1.30e-15,354;CL:0000236,1.60e-14,14;CL:0002320,1.86e-14,361;CL:0000219,1.48e-10,386;CL:0002393,5.88e-09,9;CL:0002397,5.88e-09,9;CL:0000094,1.02e-08,8;CL:0000451,5.94e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;1.33e-23;42!CL:0000049;1.19e-16;108!CL:0000051;7.24e-11;53 | |||
|ontology_enrichment_disease=DOID:2531!5.82e-15!51;DOID:0060083!5.82e-15!51;DOID:1240!9.42e-12!39;DOID:8692!5.34e-11!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.69e-10;31!DOID:1240;1.03e-08;39!DOID:2531;2.91e-08;51!DOID:0060083;2.91e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.63e-14,51;DOID:0060083,1.63e-14,51;DOID:1240,1.43e-10,39;DOID:8692,1.50e-10,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.71e-41!102;UBERON:0003061!3.71e-41!102;UBERON:0002193!6.04e-38!112;UBERON:0002371!6.46e-31!80;UBERON:0007023!4.51e-30!115;UBERON:0001474!1.35e-26!86;UBERON:0002405!6.18e-25!115;UBERON:0004765!4.26e-19!101;UBERON:0001434!4.26e-19!101;UBERON:0001049!3.37e-10!57;UBERON:0005068!3.37e-10!57;UBERON:0006241!3.37e-10!57;UBERON:0007135!3.37e-10!57;UBERON:0003080!5.37e-09!42;UBERON:0002780!6.77e-09!41;UBERON:0001890!6.77e-09!41;UBERON:0006240!6.77e-09!41;UBERON:0000178!1.28e-08!15;UBERON:0000179!1.28e-08!15;UBERON:0000463!1.28e-08!15;UBERON:0002384!1.38e-08!375;UBERON:0002616!1.72e-07!59;UBERON:0002020!1.75e-07!34;UBERON:0003528!1.75e-07!34;UBERON:0001893!2.20e-07!34;UBERON:0002791!3.35e-07!33;UBERON:0003081!8.48e-07!216;UBERON:0001869!8.95e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.33e-08;15!UBERON:0000179;2.33e-08;15!UBERON:0000463;2.33e-08;15!UBERON:0002390;6.42e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.44e-50,98;UBERON:0003061,1.44e-50,98;UBERON:0002193,1.29e-45,108;UBERON:0002371,6.92e-40,76;UBERON:0002405,1.04e-37,93;UBERON:0001474,6.21e-35,82;UBERON:0004765,2.02e-29,90;UBERON:0001434,9.89e-25,100;UBERON:0007023,3.56e-23,114;UBERON:0002384,6.52e-13,371;UBERON:0003081,1.21e-12,203;UBERON:0001049,1.56e-08,56;UBERON:0005068,1.56e-08,56;UBERON:0006241,1.56e-08,56;UBERON:0007135,1.56e-08,56;UBERON:0000178,2.37e-08,15;UBERON:0000179,2.37e-08,15;UBERON:0000463,2.37e-08,15;UBERON:0000073,4.18e-08,53;UBERON:0002616,4.18e-08,53;UBERON:0000479,4.52e-08,773;UBERON:0002780,9.50e-08,41;UBERON:0001890,9.50e-08,41;UBERON:0003080,9.50e-08,41;UBERON:0006240,9.50e-08,41;UBERON:0003528,1.05e-07,34;UBERON:0002020,1.05e-07,34;UBERON:0001893,1.35e-07,34;UBERON:0002204,1.79e-07,167;UBERON:0002791,4.61e-07,32;UBERON:0001869,6.60e-07,32 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,53.1073169948261,45.0732236080202,51.8704048857146,24.388585164632,31.8578400420687,21.2098088943024,0,0,0,71.2698245338775,139.325847837673,14.3864215274075,13.8498852132969,34.8947338598047,22.7861414251644,16.7936605679943,16.518576966968,19.8333187078324,39.5483209480416,31.74157926986,35.1746888722333,24.6374779120026,16.8578834088949,24.1570969298181,16.3984663623626,21.0051779353863,21.9928473796384,46.5406668994435,45.1839278508678,36.5651513804723,24.283261800996,13.6453075028923,18.652049208942,29.9962214523485,29.8463995180767,30.0488449125549,14.1836059080288,20.9436840502713,20.4587880255693,20.3146467040009,17.0215567407342,16.1933784738849,17.587406567972,22.9452484104889,28.01736096696,25.4267791106015,25.411156883142,25.3169909952708,90.4172625415111,77.3879651872759,61.8493004249709,44.3698093028656,45.9541292095009,62.6829788118613,90.0640270222346,110.597672522694,102.47459026196,137.277070679832,107.58930641864,103.183073448172,100.708332525696,120.118796110804,112.651478231079,100.478820663299,91.589160435395,99.6122695941535,118.62191225293,115.064241665694,18.5039860010636,14.5732226375199,15.2762769169545,0.196709770113833,0.786021525498329,1.02800749499755,0,1.30368906653436,1.4203434172042,0,0.222820913770347,0,0.664601683750863,0,0,0,0.328875809207352,0.276350017785848,0.289803085735052,1.63115219478266,1.07016331235885,0,0.793165398882963,1.14966148080576,1.03088233644789,0.759059076058509,2.86708872891687,0.651083453856419,0,4.81840381048873,1.66382594500744,3.74792179657038,5.44587679701239,2.46338399076314,0.403213486449465,1.06976078313403,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.83370705696798,0,0,11.6837061715686,17.4129737299267,9.1740992758017,15.5018905798472,22.307801520425,16.3441300585009,0,0,0,0,0,0,0,0.258416759169329,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,253.018401477241,205.523539998612,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,2.94848165003288,1.77236972004421,4.85609409356116,0.122988438543114,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,10.8335482678455,6.08411089362018,8.76923857503497,0,0,0,0,0,0,12.8092441852945,12.062635459812,17.6228898209656,23.3474324535477,14.8966071443128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.51366464488333,13.0586843772353,18.9750545534728,0,0,0,0,0,0,0,3.54655368363469,2.15627574859517,3.59360501583295,0,0,0,0,0,361.770392566489,409.851199109514,324.901762533852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.8835706384116,37.1028425408021,16.2225887861235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.16593765627276,3.39866086332371,0,0,0,1.75169719801128,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.661139661443912,0.768760269460425,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0.670302275535787,0,2.16530741786592,0,0,0,0,111.638474031077,95.5796508927969,96.2703746324335,68.848983107301,76.5133827940321,100.513363234871,81.0047155857172,97.5543966841953,0,0,0,63.1730795427444,41.9823409761455,12.6632481160177,0.478278818186467,13.7709766288643,3.06408592211787,19.0506224451495,19.1526944761988,7.01992945283647,13.009376704892,10.1841932252465,7.51903431270201,3.89371088943688,34.6870242223991,40.1581417310185,45.1397011951746,8.93113896364988,15.0547974511144,15.4336514445767,15.0164227540718,5.47086667125713,0,3.69262196843137,14.8750623161791,0.99921590399346,4.22961015263549,0.748562161632879,0.879049075631364,0,0.222886768554957,0,0,0,0,2.98244294329889,7.59614848616769,0,0,0,1.59398390600856,82.6088907438132,0,0,14.4009222389451,0,0.0898683511473268,0,19.951322438848,4.43895325366201,38.3172947755104,0,0.969332746095218,4.08179631912146,0,0,0,0.724999575434793,0,0,0,0,0,0,3.54296554325536,3.73848959738765,0,0.995213339381022,1.77328571372128,1.97446857438575,0,0,1.30815439456455,0,0,0,0,0,0,0.533034776018635,0,2.98262487150547,9.97270091400938,1.1279783030859,0.784250137270958,0.335643173951685,0,6.6753363171759,0.210998064528027,0,3.1097675715467,0,1.99052386215701,1.94606641907346,6.72133159426988,0.296521128680622,0,0.104421949505455,3.77446344691791,1.60515529459758,4.45102446878144,91.5923041862643,0.19566461893209,0,0.789168805698781,3.62972148145992,0.30607276163049,10.2994124794435,0.150323419414493,0,0,0,0,0,0,0,0,0,0,2.09672001890436,0,0.0967563312890851,0,0,1.55182426381471,0,0.90392296312213,0,0,2.27918865441163,0,0,1.92107695265417,0.999048047910651,0,0,0,0,0,0,0,0,0,0,3.60252173225874,7.39289046016762,10.2197270453578,0.429765441419957,6.04640914842423,0.279282401272254,0,0,0.399358000997982,0,0.446342914883745,1.07493555978762,0,0,0.0787831823072236,0,0.0674035438541849,0,7.28190655765746,6.36183751847443,5.5843396505746,0,0,0,31.2713709256586,18.5712469093908,2.67298049295309,0,1.26089131678717,0.262272940674991,0,0,0,1.42939065274673,1.32418394073086,0,0,0,0,0,1.8881279772348,0,0,1.61207457045891,3.97520666736664,2.97350799631566,5.15707146796491,0,0,4.37828391527548,1.88645166119599,6.62782488555513,21.8313049597258,16.9946003432232,269.770605413684,0.638341257770182,0,0,0.306345576763462,0,0,3.54427271986794,4.14889300666675,3.755727921195,4.58727356552057,6.98853024682169,3.22901295295194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829412415681711,0,0,0.150257608997218,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.66859588222096,2.33832370607266,1.32864840313363,1.96278473107013,0,0,0,4.79969750051832,10.1357143209434,99.3680432642906,0,0,0,0.622077260032973,0,0,0,0,0,0.212574920101683,0,0,0,538.862303593564,0,0,0,1.41304295212211,5.6678630530234,3.99084647642878,3.07674546361133,1.26035848110859,0.691572524642179,3.55246420390072,4.28308260777463,0,0,0,0,0,0,0,0.902523940191087,0,4.68908406739856,0,0,0,1.48582686160468,3.12431239445539,4.34042272652487,1.45856363445986,0,0,1.98484471355718,0,0.127762427639595,0.535701835878287,3.02655349996942,0.606965604236632,0.91064876540519,1.77404740325278,50.2420185743198,0,4.14615371158673,1.24968269769413,0,0,1.72684804271131,3.61365856806804,0,1.82631744101899,0,0,1.35805433935647,0,0,0,0,0,0,0,1.29068207646083,0,0.0852134047591577,1.27016115057279,0,0,0,0,0,0,0.647428837187895,1.02662806856247,4.6392577253528,1.45713297917742,0,0,0,0,0,0,3.24131464053368,5.90110813360685,0,0.735444965261716,0,7.26341328325297,12.7729952140647,0.8453114551668,0,23.777931248903,17.2102560889451,64.8618101952789,0,0,0,1.46067277649303,7.33966853447265,5.44690415975515,0,1.01987235286372,0.436350690340377,8.99345628876181,0,0,0,0,0,0,0,0,0.18378979906969,0,1.06090177505535,0.535928260312357,4.97501663675268,6.30941274757561,4.90438158372256,2.14257988317366,7.68608027048473,11.2355232875503,0,0.509177266225319,0.202117188958219,3.04803447055746,0.684466602170562,33.7433785603084,2.15166616178029,2.32862249582209,0,0,0,0,2.34640942403454,0.733448665097199,1.22068853494722,1.99727032255654,19.1210103911475,23.401499938136 | |||
|short_description=p2@LRMP | |||
}} |
Revision as of 12:43, 11 January 2014
Short description: | p2@LRMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRMP_5end |
Coexpression cluster: | C2203_non_Neutrophils_Eosinophils_lymphoma_CD19_Whole_Burkitt |
Association with transcript: | 0bp_to_ENST00000554942_5end |
EntrezGene: | LRMP |
HGNC: | 6690 |
UniProt: | G3V2F6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.44e-50 | 98 |
blood island | 1.44e-50 | 98 |
hemolymphoid system | 1.29e-45 | 108 |
bone marrow | 6.92e-40 | 76 |
immune system | 1.04e-37 | 93 |
bone element | 6.21e-35 | 82 |
skeletal element | 2.02e-29 | 90 |
skeletal system | 9.89e-25 | 100 |
adult organism | 3.56e-23 | 114 |
connective tissue | 6.52e-13 | 371 |
lateral plate mesoderm | 1.21e-12 | 203 |
neural tube | 1.56e-08 | 56 |
neural rod | 1.56e-08 | 56 |
future spinal cord | 1.56e-08 | 56 |
neural keel | 1.56e-08 | 56 |
blood | 2.37e-08 | 15 |
haemolymphatic fluid | 2.37e-08 | 15 |
organism substance | 2.37e-08 | 15 |
regional part of nervous system | 4.18e-08 | 53 |
regional part of brain | 4.18e-08 | 53 |
tissue | 4.52e-08 | 773 |
regional part of forebrain | 9.50e-08 | 41 |
forebrain | 9.50e-08 | 41 |
anterior neural tube | 9.50e-08 | 41 |
future forebrain | 9.50e-08 | 41 |
brain grey matter | 1.05e-07 | 34 |
gray matter | 1.05e-07 | 34 |
telencephalon | 1.35e-07 | 34 |
musculoskeletal system | 1.79e-07 | 167 |
regional part of telencephalon | 4.61e-07 | 32 |
cerebral hemisphere | 6.60e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.63e-14 | 51 |
immune system cancer | 1.63e-14 | 51 |
leukemia | 1.43e-10 | 39 |
myeloid leukemia | 1.50e-10 | 31 |