FFCP PHASE1:Hg19::chr17:63052700..63052739,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10672 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4381 | |||
|TSSclassifier=strong | |||
|UniProt=F8W818,Q14344 | |||
|association_with_transcript=180bp_to_ENST00000239138,ENST00000439174,NM_006572,uc002jfc.2_5end | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_3_at_GNA13_5end | |||
|id=chr17:63052700..63052739,- | |||
|ontology_enrichment_celltype=CL:0000738!1.38e-37!140;CL:0000766!1.38e-31!76;CL:0002031!8.51e-29!124;CL:0000557!3.09e-28!71;CL:0000839!6.90e-27!70;CL:0002087!1.03e-26!119;CL:0002009!9.33e-26!65;CL:0002057!1.07e-24!42;CL:0000860!1.53e-24!45;CL:0002194!1.76e-24!63;CL:0000576!1.76e-24!63;CL:0000040!1.76e-24!63;CL:0000559!1.76e-24!63;CL:0000037!1.98e-22!172;CL:0000566!1.98e-22!172;CL:0002032!1.27e-20!165;CL:0000837!1.27e-20!165;CL:0000988!3.39e-19!182;CL:0000763!1.09e-16!112;CL:0000049!1.09e-16!112;CL:0000451!3.89e-08!10;CL:0000990!7.16e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.72e-18;33!CL:0002057;1.72e-18;33!CL:0000473;5.09e-17;39!CL:0000234;5.09e-17;39!CL:0000576;3.11e-15;48!CL:0000766;1.39e-13;69!CL:0002087;1.97e-08;104!CL:0000738;2.02e-08;136!CL:0000451;3.47e-08;10!CL:0000990;6.61e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,8.77e-38,136;CL:0000766,2.85e-32,72;CL:0002031,6.02e-29,120;CL:0000557,6.98e-29,67;CL:0000839,1.70e-27,66;CL:0002087,7.45e-27,115;CL:0002009,2.08e-26,61;CL:0000473,3.60e-26,48;CL:0000234,3.60e-26,48;CL:0002194,4.08e-25,59;CL:0000576,4.08e-25,59;CL:0000040,4.08e-25,59;CL:0000559,4.08e-25,59;CL:0000860,1.07e-24,42;CL:0002057,1.07e-24,42;CL:0000037,2.48e-22,168;CL:0002032,1.59e-20,161;CL:0000837,1.59e-20,161;CL:0000988,1.17e-19,177;CL:0000763,1.12e-16,108;CL:0000049,1.12e-16,108;CL:0000451,3.89e-08,10;CL:0000990,7.16e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;3.81e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.76e-28!102;UBERON:0003061!2.76e-28!102;UBERON:0002371!1.14e-23!80;UBERON:0002193!5.49e-23!112;UBERON:0001474!3.06e-21!86;UBERON:0004765!2.69e-19!101;UBERON:0001434!2.69e-19!101;UBERON:0002405!1.00e-14!115;UBERON:0007023!3.97e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.37e-28,98;UBERON:0003061,1.37e-28,98;UBERON:0002371,4.72e-24,76;UBERON:0002193,3.91e-23,108;UBERON:0001474,1.75e-21,82;UBERON:0004765,3.68e-19,90;UBERON:0002405,1.23e-18,93;UBERON:0001434,2.17e-18,100;UBERON:0007023,5.61e-08,114 | |||
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| |||
|short_description=p3@GNA13 | |||
}} |
Revision as of 16:52, 20 January 2014
Short description: | p3@GNA13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GNA13_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 180bp_to_ENST00000239138, ENST00000439174, NM_006572, uc002jfc.2_5end |
EntrezGene: | GNA13 |
HGNC: | 4381 |
UniProt: | F8W818Q14344 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 8.77e-38 | 136 |
myeloid leukocyte | 2.85e-32 | 72 |
hematopoietic lineage restricted progenitor cell | 6.02e-29 | 120 |
granulocyte monocyte progenitor cell | 6.98e-29 | 67 |
myeloid lineage restricted progenitor cell | 1.70e-27 | 66 |
nongranular leukocyte | 7.45e-27 | 115 |
macrophage dendritic cell progenitor | 2.08e-26 | 61 |
defensive cell | 3.60e-26 | 48 |
phagocyte | 3.60e-26 | 48 |
monopoietic cell | 4.08e-25 | 59 |
monocyte | 4.08e-25 | 59 |
monoblast | 4.08e-25 | 59 |
promonocyte | 4.08e-25 | 59 |
classical monocyte | 1.07e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.07e-24 | 42 |
hematopoietic stem cell | 2.48e-22 | 168 |
hematopoietic oligopotent progenitor cell | 1.59e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.59e-20 | 161 |
hematopoietic cell | 1.17e-19 | 177 |
myeloid cell | 1.12e-16 | 108 |
common myeloid progenitor | 1.12e-16 | 108 |
dendritic cell | 3.89e-08 | 10 |
conventional dendritic cell | 7.16e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.37e-28 | 98 |
blood island | 1.37e-28 | 98 |
bone marrow | 4.72e-24 | 76 |
hemolymphoid system | 3.91e-23 | 108 |
bone element | 1.75e-21 | 82 |
skeletal element | 3.68e-19 | 90 |
immune system | 1.23e-18 | 93 |
skeletal system | 2.17e-18 | 100 |
adult organism | 5.61e-08 | 114 |