FFCP PHASE1:Hg19::chr22:31608219..31608303,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3985 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6614 | |||
|TSSclassifier=strong | |||
|UniProt=P53671,B5MC51,E7EUC1,Q7L3H5 | |||
|association_with_transcript=0bp_to_ENST00000331728,ENST00000406516,ENST00000444929,ENST00000462625,NM_005569,uc003akg.2,uc003akh.2,uc003aki.2_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_LIMK2_5end | |||
|id=chr22:31608219..31608303,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.89e-16!42;CL:0000115!9.29e-16!35;CL:0000860!1.66e-14!45;CL:0002139!1.14e-13!24;CL:0000037!2.86e-13!172;CL:0000566!2.86e-13!172;CL:0002032!3.46e-13!165;CL:0000837!3.46e-13!165;CL:0002078!3.97e-13!44;CL:0000766!9.79e-13!76;CL:0000738!1.32e-12!140;CL:0000988!3.18e-12!182;CL:0000763!1.33e-11!112;CL:0000049!1.33e-11!112;CL:0002087!1.43e-11!119;CL:0002031!4.59e-11!124;CL:0000071!6.91e-11!18;CL:0002546!6.91e-11!18;CL:0002009!2.82e-10!65;CL:0002194!3.27e-10!63;CL:0000576!3.27e-10!63;CL:0000040!3.27e-10!63;CL:0000559!3.27e-10!63;CL:0000557!5.87e-10!71;CL:0000839!7.01e-10!70;CL:0000213!3.57e-09!57;CL:0000215!3.57e-09!57 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.01e-17;33!CL:0002057;1.01e-17;33!CL:0000115;9.12e-14;36!CL:0002139;1.05e-13;24!CL:0000473;1.97e-13;39!CL:0000234;1.97e-13;39!CL:0000071;6.54e-11;18!CL:0000576;9.11e-11;48!CL:0002078;5.07e-09;45!CL:0000766;1.16e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.89e-16,42;CL:0002057,1.89e-16,42;CL:0000115,2.82e-16,36;CL:0000473,6.50e-15,48;CL:0000234,6.50e-15,48;CL:0000766,1.51e-14,72;CL:0000037,2.30e-14,168;CL:0002032,2.65e-14,161;CL:0000837,2.65e-14,161;CL:0000738,8.34e-14,136;CL:0002139,1.14e-13,24;CL:0002078,1.30e-13,45;CL:0000763,6.57e-13,108;CL:0000049,6.57e-13,108;CL:0000988,7.02e-13,177;CL:0002087,8.01e-13,115;CL:0002031,3.01e-12,120;CL:0002009,5.27e-12,61;CL:0002194,5.69e-12,59;CL:0000576,5.69e-12,59;CL:0000040,5.69e-12,59;CL:0000559,5.69e-12,59;CL:0000557,1.52e-11,67;CL:0000839,1.78e-11,66;CL:0000071,6.91e-11,18;CL:0002546,6.91e-11,18;CL:0000213,1.40e-09,58;CL:0000215,1.40e-09,58 | |||
|ontology_enrichment_development_v019=CL:0002057;1.28e-12;42!CL:0002546;6.54e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.09e-15!112;UBERON:0002390!7.28e-13!102;UBERON:0003061!7.28e-13!102;UBERON:0002405!8.14e-13!115;UBERON:0001986!6.91e-11!18;UBERON:0004638!6.91e-11!18;UBERON:0004852!6.91e-11!18;UBERON:0000487!3.97e-09!22;UBERON:0003081!1.51e-08!216;UBERON:0007023!1.95e-08!115;UBERON:0002371!1.39e-07!80;UBERON:0006914!3.69e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.54e-11;18!UBERON:0001986;6.54e-11;18!UBERON:0004852;6.54e-11;18!UBERON:0000487;4.84e-09;22!UBERON:0006914;4.13e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.70e-16,108;UBERON:0002390,2.35e-14,98;UBERON:0003061,2.35e-14,98;UBERON:0002405,4.67e-12,93;UBERON:0004638,6.91e-11,18;UBERON:0001986,6.91e-11,18;UBERON:0004852,6.91e-11,18;UBERON:0000487,3.97e-09,22;UBERON:0002371,8.78e-09,76;UBERON:0003081,1.65e-08,203;UBERON:0007023,1.85e-08,114;UBERON:0006914,3.69e-07,25;UBERON:0001474,4.43e-07,82 | |||
|phase1_expression=2.18014055124668,3.21150785836475,3.10099689011137,2.00146596706261,0.893922188854576,0.872338524100369,5.06599756336621,0,1.30592814099919,13.7611004440845,46.0548770861802,10.7036272343784,11.3419800638235,2.47532705920093,2.98257638155124,12.101852636132,4.82155622419182,6.57279081348636,3.90346239032406,14.0358006207538,11.0160373271897,10.0305510872988,7.72837165253853,11.6343261311952,11.5499228427219,14.2128934691189,17.0769226055887,14.4040729804033,33.8293278090057,14.2016877295969,16.5653251948201,13.7913183671839,21.9880320708123,17.7481924880058,16.190644921283,8.10364625178303,10.2760153767197,45.427623499614,40.5099783889686,39.0619567288533,11.867520134716,11.0123846446453,8.24241816429397,25.5900900252034,26.8291920019055,33.9617685662943,55.0856817466473,33.7157668177897,47.0753683760557,368.821646956997,287.156152019122,294.893340671066,55.159308917859,55.511682788209,81.2558919566051,43.6722227738843,22.1053981546855,38.4277158401095,65.1958690750022,30.1673285451528,70.9664209636936,345.024459995305,287.22766697515,340.979800426155,78.9369129069749,32.340957807395,79.7212478714336,273.86104512985,257.612561699579,221.749810443924,55.6967542422699,46.4029821344332,75.0015858234896,5.0701268714866,6.59073329891635,10.6925909209272,17.4109378277067,20.4240574264449,22.1801309641971,2.56511469367124,2.58591680358817,6.02791707423292,8.79981222306614,12.561188059029,8.89509253863555,12.8019066769952,10.0098996759003,6.32227683949932,9.25462821898807,7.63243003628291,4.55370375287559,1.76171156811282,6.11637165000366,15.8605594294831,26.9044110231137,8.95505888235262,6.29471264364266,10.2182798314783,9.66327045297693,20.0623794468814,8.79990119910694,13.2565385605725,17.534405556712,18.3827253860536,19.4439898933393,16.8365759883552,19.4978781910811,27.7958163804715,28.4829971156133,15.7860388419529,17.6864011382943,15.0697604582227,10.6766325476683,14.1796638887548,11.4989076185474,18.3561135170057,10.3469533272519,9.96519591899627,11.1328664488581,10.5126586726952,10.4173352617027,11.4054245333805,16.4126879794772,12.0307414485153,12.4930726552346,14.9169668787731,12.3169199538157,4.03213486449465,5.34880391567015,5.21367853978076,4.87613732627923,7.37770945674,4.85877735005415,2.53007406669196,3.50936537445123,2.462390822334,2.3858578411533,7.78615792484217,8.50813354476611,7.09534071880205,8.69564378361948,19.0574554849172,15.3004021082868,11.4943177263173,5.8418530857843,3.65672448328461,4.38761269712255,3.81584998888547,1.71598473234038,2.22874500797739,38.7586694365075,31.8286800189266,40.9625791896961,36.7450162250606,41.9499436209906,35.2151093683286,44.5159278723407,30.4931775819808,21.7017420238893,31.7984582126437,63.2442027861361,51.6985031888589,71.2661208040655,51.4728312484216,42.1273812898515,27.3257168549284,34.5775233844302,27.5898127184139,70.5256532343063,47.4632829784064,61.3725842166864,876.339775949821,1151.70738452053,13.5189156164186,3.97577561356255,2.65924074495618,2.25095607382472,5.73673241497627,3.54668382198357,5.60677600142307,12.8098794875646,4.9333509683432,1.8672662123986,11.3156964538538,7.35578564010564,2.72443369760877,4.03323147135999,7.96692868234909,1.24864030732128,7.98660550162229,1.19558944441441,6.6937664226946,4.20869655357142,5.33713065468544,2.65400422631361,4.42203542322365,1.75653827998801,2.37600571456411,1.7308685049499,4.55080680969013,3.59309070908119,4.20840284885166,5.50521487436642,0.831192346452549,4.38977620880838,2.45190236639216,0.751190294532984,3.62982986112067,9.86642996288741,3.84403299873421,2.96704661623387,12.3037349394605,2.78241828943785,9.79034052173391,3.35010341396862,14.1772119082664,7.3077753870899,11.107086066741,1.84099797284599,2.42469085228218,3.90510551768276,4.23158812556089,5.08681776931463,8.11695583285847,8.72787585890671,5.44928731239107,16.8323714458842,23.4577689929029,14.8728246872984,12.4393266018445,16.1485344560402,24.4534830580806,3.12899064659632,3.85944562915731,0,2.78620756819187,3.60939740834793,3.07597680103594,3.03452442140583,2.89213235860178,1.7647035637183,1.96091499683166,2.60997681022206,2.29213223872279,2.5508790466295,1.15424147083917,57.5761254607226,53.2918740453094,6.9967581926338,5.88034845542168,29.1536580090211,84.5231406342758,44.3092430011053,26.0463228654644,6.14942192715568,3.60292401626904,3.51200913307602,7.86812272803337,5.5290934826397,7.40707561268237,5.2129328849652,3.11980435583874,7.21656710126366,10.2018756378068,2.11335649624479,37.6796428656403,49.5394498456973,40.3338802737348,4.74122638775565,7.72637545885385,16.2503224017682,8.89216207529103,17.5384771500699,6.56136837907439,5.71139235876122,9.64070661248228,8.14982556595919,4.94077695473735,11.1180976957911,6.40462209264727,13.64750727205,6.21984346622316,4.32359860250884,8.07951573928832,2.41291998310242,3.4378958300245,2.34434894420094,10.2643467613623,1.95372236136315,4.50514586765876,0.571652865261156,7.28852048244845,4.79556075716608,3.6669142910475,1.42198887333556,3.57656445851882,5.071816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| |||
|short_description=p1@LIMK2 | |||
}} |
Revision as of 15:22, 21 January 2014
Short description: | p1@LIMK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIMK2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000331728, ENST00000406516, ENST00000444929, ENST00000462625, NM_005569, uc003akg.2, uc003akh.2, uc003aki.2_5end |
EntrezGene: | LIMK2 |
HGNC: | 6614 |
UniProt: | P53671B5MC51E7EUC1Q7L3H5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.89e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.89e-16 | 42 |
endothelial cell | 2.82e-16 | 36 |
defensive cell | 6.50e-15 | 48 |
phagocyte | 6.50e-15 | 48 |
myeloid leukocyte | 1.51e-14 | 72 |
hematopoietic stem cell | 2.30e-14 | 168 |
hematopoietic oligopotent progenitor cell | 2.65e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.65e-14 | 161 |
leukocyte | 8.34e-14 | 136 |
endothelial cell of vascular tree | 1.14e-13 | 24 |
meso-epithelial cell | 1.30e-13 | 45 |
myeloid cell | 6.57e-13 | 108 |
common myeloid progenitor | 6.57e-13 | 108 |
hematopoietic cell | 7.02e-13 | 177 |
nongranular leukocyte | 8.01e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 3.01e-12 | 120 |
macrophage dendritic cell progenitor | 5.27e-12 | 61 |
monopoietic cell | 5.69e-12 | 59 |
monocyte | 5.69e-12 | 59 |
monoblast | 5.69e-12 | 59 |
promonocyte | 5.69e-12 | 59 |
granulocyte monocyte progenitor cell | 1.52e-11 | 67 |
myeloid lineage restricted progenitor cell | 1.78e-11 | 66 |
blood vessel endothelial cell | 6.91e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.91e-11 | 18 |
lining cell | 1.40e-09 | 58 |
barrier cell | 1.40e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.70e-16 | 108 |
hematopoietic system | 2.35e-14 | 98 |
blood island | 2.35e-14 | 98 |
immune system | 4.67e-12 | 93 |
blood vessel endothelium | 6.91e-11 | 18 |
endothelium | 6.91e-11 | 18 |
cardiovascular system endothelium | 6.91e-11 | 18 |
simple squamous epithelium | 3.97e-09 | 22 |
bone marrow | 8.78e-09 | 76 |
lateral plate mesoderm | 1.65e-08 | 203 |
adult organism | 1.85e-08 | 114 |
squamous epithelium | 3.69e-07 | 25 |
bone element | 4.43e-07 | 82 |