FFCP PHASE1:Hg19::chr5:157346266..157346270,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:157346266..157346270,+ | |||
|id=chr5:157346266..157346270,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.62e-08!254;CL:0001014!4.87e-08!2;CL:0001016!4.87e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0000307;1.09e-44;3!CL:0002202;1.09e-15;9!CL:0002632;1.09e-15;9!CL:0000239;2.74e-12;3!CL:1000615;2.74e-12;3!CL:0002306;2.74e-12;3!CL:0002368;3.47e-11;13!CL:0000333;6.78e-08;5!CL:0000312;6.78e-08;5!CL:0000240;8.72e-07;6!CL:0000311;8.72e-07;6!CL:0000079;8.72e-07;6!CL:0000237;8.72e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.53e-44,3;CL:0000069,1.53e-44,3;CL:0000307,1.53e-44,3;CL:0000377,1.53e-44,3;CL:0002202,1.22e-15,9;CL:0002632,1.22e-15,9;CL:0000239,2.31e-12,3;CL:1000615,2.31e-12,3;CL:0002306,2.31e-12,3;CL:0002368,3.75e-11,13;CL:0000312,6.55e-08,5;CL:0000240,8.48e-07,6;CL:0000311,8.48e-07,6;CL:0000079,8.48e-07,6;CL:0000237,8.48e-07,6;CL:0000036,8.48e-07,6;CL:0000357,8.48e-07,6;CL:0000114,8.48e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000377;1.09e-44;3!UBERON:0007123;5.35e-08;5!CL:0000357;8.72e-07;6!CL:0000114;8.72e-07;6 | |||
|ontology_enrichment_disease=DOID:0050687!2.44e-12!143;DOID:299!1.88e-11!25;DOID:305!7.80e-11!106;DOID:3095!8.68e-11!22;DOID:2994!8.68e-11!22;DOID:162!1.13e-08!235;DOID:14566!2.49e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:3193;9.86e-18;2!DOID:962;9.86e-18;2!DOID:1192;2.74e-12;3!DOID:169;8.72e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3193,1.07e-17,2;DOID:962,1.07e-17,2;DOID:1192,2.89e-12,3;DOID:169,8.97e-07,6 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0003126;7.47e-20;7!UBERON:0001005;7.47e-20;7!UBERON:0003714;9.86e-18;2!UBERON:0006853;2.74e-12;3!UBERON:0007685;2.74e-12;3!UBERON:0004134;2.74e-12;3!UBERON:0007196;7.92e-10;15!UBERON:0001558;7.92e-10;15!UBERON:0002046;5.35e-08;5!UBERON:0000013;6.78e-08;5!UBERON:0002410;6.78e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003126,8.62e-20,7;UBERON:0001005,8.62e-20,7;UBERON:0003714,1.07e-17,2;UBERON:0006853,2.31e-12,3;UBERON:0007685,2.31e-12,3;UBERON:0004134,2.31e-12,3;UBERON:0007196,8.46e-10,15;UBERON:0001558,8.46e-10,15;UBERON:0002046,5.35e-08,5;UBERON:0004117,5.35e-08,5;UBERON:0007689,5.35e-08,5;UBERON:0007123,5.35e-08,5;UBERON:0003091,5.35e-08,5;UBERON:0000013,7.01e-08,5;UBERON:0002410,7.01e-08,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1240175325762,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66215201785745,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.510450849978337,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01090682660736,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0.450970258243478,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0.599428828746391,0.144090417154106,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0,0.335434687599266,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0.163565394255844,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0.629063767423586,0,0,0,0.619678821295011,1.11728983594649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0.175871244359621,0.638812138197976,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223710863595585,0,0.365753774946808,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0.874124575709564,0.126698501011437,0.203977659483963,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,3.13969215225718,0,0,0.217716747896961,0,0,0,0,0.0814032686109745,0,0,0.179650404213174,0,0,0,0,0,0 | |||
|short_description=p@chr5:157346266..157346270,+ | |||
}} |
Revision as of 08:42, 22 January 2014
Short description: | p@chr5:157346266..157346270, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:157346266..157346270, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 1.53e-44 | 3 |
branched duct epithelial cell | 1.53e-44 | 3 |
tracheal epithelial cell | 1.53e-44 | 3 |
tracheoblast | 1.53e-44 | 3 |
epithelial cell of tracheobronchial tree | 1.22e-15 | 9 |
epithelial cell of lower respiratory tract | 1.22e-15 | 9 |
brush border epithelial cell | 2.31e-12 | 3 |
kidney cortex tubule cell | 2.31e-12 | 3 |
epithelial cell of proximal tubule | 2.31e-12 | 3 |
respiratory epithelial cell | 3.75e-11 | 13 |
keratinocyte | 6.55e-08 | 5 |
stratified squamous epithelial cell | 8.48e-07 | 6 |
keratin accumulating cell | 8.48e-07 | 6 |
stratified epithelial cell | 8.48e-07 | 6 |
keratinizing barrier epithelial cell | 8.48e-07 | 6 |
epithelial fate stem cell | 8.48e-07 | 6 |
stratified epithelial stem cell | 8.48e-07 | 6 |
surface ectodermal cell | 8.48e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
trachea | 8.62e-20 | 7 |
respiratory airway | 8.62e-20 | 7 |
neural tissue | 1.07e-17 | 2 |
renal cortex tubule | 2.31e-12 | 3 |
region of nephron tubule | 2.31e-12 | 3 |
proximal tubule | 2.31e-12 | 3 |
tracheobronchial tree | 8.46e-10 | 15 |
lower respiratory tract | 8.46e-10 | 15 |
thyroid gland | 5.35e-08 | 5 |
pharyngeal pouch | 5.35e-08 | 5 |
thyroid diverticulum | 5.35e-08 | 5 |
pharyngeal pouch 2 | 5.35e-08 | 5 |
thyroid primordium | 5.35e-08 | 5 |
sympathetic nervous system | 7.01e-08 | 5 |
autonomic nervous system | 7.01e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
peripheral nerve sheath neoplasm | 1.07e-17 | 2 |
neurofibroma | 1.07e-17 | 2 |
peripheral nervous system neoplasm | 2.89e-12 | 3 |
neuroendocrine tumor | 8.97e-07 | 6 |