MCL coexpression mm9:239
From FANTOM5_SSTAR
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0003939 | L-iditol 2-dehydrogenase activity | 0.0132825759081275 |
| GO:0003692 | left-handed Z-DNA binding | 0.0132825759081275 |
| GO:0005792 | microsome | 0.0132825759081275 |
| GO:0042598 | vesicular fraction | 0.0132825759081275 |
| GO:0016553 | base conversion or substitution editing | 0.0132825759081275 |
| GO:0003726 | double-stranded RNA adenosine deaminase activity | 0.0132825759081275 |
| GO:0003969 | RNA editase activity | 0.0151784233633089 |
| GO:0004000 | adenosine deaminase activity | 0.0265506003537321 |
| GO:0031047 | RNA-mediated gene silencing | 0.0320874135331278 |
| GO:0043169 | cation binding | 0.0320874135331278 |
| GO:0006749 | glutathione metabolic process | 0.0320874135331278 |
| GO:0046872 | metal ion binding | 0.0320874135331278 |
| GO:0009451 | RNA modification | 0.0320874135331278 |
| GO:0005624 | membrane fraction | 0.0320874135331278 |
| GO:0043167 | ion binding | 0.0320874135331278 |
| GO:0019239 | deaminase activity | 0.0320874135331278 |
| GO:0051287 | NAD binding | 0.0320874135331278 |
| GO:0004364 | glutathione transferase activity | 0.0320874135331278 |
| GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | 0.0320874135331278 |
| GO:0000267 | cell fraction | 0.0325170541772116 |
| GO:0003725 | double-stranded RNA binding | 0.0325170541772116 |
| GO:0016458 | gene silencing | 0.0325170541772116 |
| GO:0050381 | unspecific monooxygenase activity | 0.0368429415700452 |
| GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen | 0.0419004765711758 |
| GO:0005783 | endoplasmic reticulum | 0.0488021084113138 |
| GO:0043566 | structure-specific DNA binding | 0.0488021084113138 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| metabolising cell | 1.94e-30 | 5 |
| endopolyploid cell | 1.94e-30 | 5 |
| parenchymal cell | 1.94e-30 | 5 |
| polyploid cell | 1.94e-30 | 5 |
| hepatocyte | 1.94e-30 | 5 |
| fibroblast | 1.20e-07 | 1 |
| hepatic stellate cell | 1.20e-07 | 1 |
| endodermal cell | 1.45e-07 | 20 |
| lining cell | 4.21e-07 | 1 |
| meso-epithelial cell | 4.21e-07 | 1 |
| endothelial cell | 4.21e-07 | 1 |
| endothelial cell of sinusoid | 4.21e-07 | 1 |
| endothelial cell of hepatic sinusoid | 4.21e-07 | 1 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
