FF:10436-106E4: Difference between revisions

Revision as of 18:59, 9 July 2012

Name:	signet ring carcinoma cell line:Kato III
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	stomach
dev stage	NA
sex	unknown
age	NA
cell type	unclassifiable
cell line	Kato III
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0402
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.497
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0.832
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-7.531246e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0278
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.112
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.168
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.199
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.297
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.368
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-5.566968e-4
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0188
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.513
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10753

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.409
MA0003.1	MA0003.1	0.935
MA0004.1	MA0004.1	0.00397
MA0006.1	MA0006.1	0.477
MA0007.1	MA0007.1	0.47
MA0009.1	MA0009.1	0.0155
MA0014.1	MA0014.1	0.05
MA0017.1	MA0017.1	7.71166e-4
MA0018.2	MA0018.2	0.356
MA0019.1	MA0019.1	0.249
MA0024.1	MA0024.1	7.29062e-5
MA0025.1	MA0025.1	0.0563
MA0027.1	MA0027.1	0.96
MA0028.1	MA0028.1	1.72707e-4
MA0029.1	MA0029.1	0.123
MA0030.1	MA0030.1	0.156
MA0031.1	MA0031.1	0.0177
MA0035.2	MA0035.2	0.00892
MA0038.1	MA0038.1	8.88441e-6
MA0039.2	MA0039.2	4.37188e-4
MA0040.1	MA0040.1	0.395
MA0041.1	MA0041.1	0.865
MA0042.1	MA0042.1	0.797
MA0043.1	MA0043.1	0.539
MA0046.1	MA0046.1	3.26501e-7
MA0047.2	MA0047.2	8.03824e-5
MA0048.1	MA0048.1	0.537
MA0050.1	MA0050.1	0.00932
MA0051.1	MA0051.1	0.00864
MA0052.1	MA0052.1	0.23
MA0055.1	MA0055.1	0.0037
MA0057.1	MA0057.1	0.647
MA0058.1	MA0058.1	7.47392e-4
MA0059.1	MA0059.1	0.0026
MA0060.1	MA0060.1	8.70942e-11
MA0061.1	MA0061.1	0.734
MA0062.2	MA0062.2	5.08405e-6
MA0065.2	MA0065.2	1.80624e-4
MA0066.1	MA0066.1	0.978
MA0067.1	MA0067.1	0.607
MA0068.1	MA0068.1	0.127
MA0069.1	MA0069.1	0.902
MA0070.1	MA0070.1	0.0359
MA0071.1	MA0071.1	0.659
MA0072.1	MA0072.1	0.916
MA0073.1	MA0073.1	0.932
MA0074.1	MA0074.1	0.656
MA0076.1	MA0076.1	0.00172
MA0077.1	MA0077.1	0.0985
MA0078.1	MA0078.1	0.957
MA0079.2	MA0079.2	0.7
MA0080.2	MA0080.2	0.162
MA0081.1	MA0081.1	0.116
MA0083.1	MA0083.1	9.45172e-5
MA0084.1	MA0084.1	0.647
MA0087.1	MA0087.1	0.862
MA0088.1	MA0088.1	0.0991
MA0090.1	MA0090.1	0.716
MA0091.1	MA0091.1	0.0567
MA0092.1	MA0092.1	0.765
MA0093.1	MA0093.1	0.00339
MA0099.2	MA0099.2	1.13119e-5
MA0100.1	MA0100.1	0.735
MA0101.1	MA0101.1	0.285
MA0102.2	MA0102.2	0.568
MA0103.1	MA0103.1	1.50543e-10
MA0104.2	MA0104.2	0.00303
MA0105.1	MA0105.1	0.373
MA0106.1	MA0106.1	0.833
MA0107.1	MA0107.1	0.392
MA0108.2	MA0108.2	0.0121
MA0111.1	MA0111.1	0.223
MA0112.2	MA0112.2	0.0318
MA0113.1	MA0113.1	0.561
MA0114.1	MA0114.1	3.37396e-5
MA0115.1	MA0115.1	0.00295
MA0116.1	MA0116.1	0.872
MA0117.1	MA0117.1	0.249
MA0119.1	MA0119.1	0.0259
MA0122.1	MA0122.1	0.526
MA0124.1	MA0124.1	0.0964
MA0125.1	MA0125.1	0.0373
MA0131.1	MA0131.1	0.753
MA0135.1	MA0135.1	0.868
MA0136.1	MA0136.1	0.91
MA0137.2	MA0137.2	0.689
MA0138.2	MA0138.2	0.126
MA0139.1	MA0139.1	0.0364
MA0140.1	MA0140.1	0.0699
MA0141.1	MA0141.1	0.0185
MA0142.1	MA0142.1	0.551
MA0143.1	MA0143.1	0.268
MA0144.1	MA0144.1	0.594
MA0145.1	MA0145.1	0.157
MA0146.1	MA0146.1	0.0058
MA0147.1	MA0147.1	0.00415
MA0148.1	MA0148.1	3.19763e-4
MA0149.1	MA0149.1	0.0111
MA0150.1	MA0150.1	0.328
MA0152.1	MA0152.1	0.363
MA0153.1	MA0153.1	2.52539e-6
MA0154.1	MA0154.1	0.76
MA0155.1	MA0155.1	0.43
MA0156.1	MA0156.1	0.256
MA0157.1	MA0157.1	0.192
MA0159.1	MA0159.1	0.0026
MA0160.1	MA0160.1	0.00523
MA0162.1	MA0162.1	0.585
MA0163.1	MA0163.1	0.473
MA0164.1	MA0164.1	0.149
MA0258.1	MA0258.1	0.0917
MA0259.1	MA0259.1	0.152

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10753

Novel motif	Logo	P-value
1	1	0.148
10	10	0.29
100	100	0.534
101	101	0.777
102	102	0.285
103	103	0.903
104	104	0.757
105	105	0.219
106	106	0.343
107	107	0.669
108	108	0.773
109	109	0.0124
11	11	0.343
110	110	0.152
111	111	0.935
112	112	0.943
113	113	0.257
114	114	0.755
115	115	0.794
116	116	0.289
117	117	0.107
118	118	0.332
119	119	0.195
12	12	0.149
120	120	0.467
121	121	0.667
122	122	0.0899
123	123	0.175
124	124	0.471
125	125	0.955
126	126	0.248
127	127	0.561
128	128	0.757
129	129	0.052
13	13	0.00268
130	130	0.681
131	131	0.127
132	132	0.972
133	133	0.0844
134	134	0.433
135	135	0.0352
136	136	0.443
137	137	0.872
138	138	0.614
139	139	0.32
14	14	0.721
140	140	0.228
141	141	0.391
142	142	0.118
143	143	0.379
144	144	0.0947
145	145	0.985
146	146	0.36
147	147	0.783
148	148	0.286
149	149	0.876
15	15	0.169
150	150	0.38
151	151	0.456
152	152	0.773
153	153	0.601
154	154	0.956
155	155	0.561
156	156	0.226
157	157	0.809
158	158	0.461
159	159	0.962
16	16	0.387
160	160	0.56
161	161	0.929
162	162	0.766
163	163	0.719
164	164	0.754
165	165	0.956
166	166	0.437
167	167	0.272
168	168	0.935
169	169	0.012
17	17	0.273
18	18	0.607
19	19	0.816
2	2	0.918
20	20	0.502
21	21	0.989
22	22	0.586
23	23	0.826
24	24	0.0901
25	25	0.454
26	26	0.032
27	27	0.921
28	28	0.504
29	29	0.183
3	3	0.665
30	30	0.758
31	31	0.915
32	32	0.0249
33	33	0.0591
34	34	0.591
35	35	0.721
36	36	0.0339
37	37	0.388
38	38	0.241
39	39	0.463
4	4	0.268
40	40	0.0203
41	41	0.219
42	42	0.547
43	43	0.484
44	44	0.816
45	45	0.976
46	46	0.489
47	47	0.0982
48	48	0.24
49	49	0.263
5	5	0.937
50	50	0.317
51	51	0.894
52	52	0.693
53	53	0.731
54	54	0.969
55	55	0.674
56	56	0.44
57	57	0.292
58	58	0.767
59	59	0.797
6	6	0.674
60	60	0.368
61	61	0.191
62	62	0.8
63	63	0.178
64	64	0.215
65	65	0.578
66	66	2.03208e-4
67	67	0.346
68	68	0.0176
69	69	0.0484
7	7	0.127
70	70	0.626
71	71	0.273
72	72	0.714
73	73	0.247
74	74	0.143
75	75	0.206
76	76	0.407
77	77	0.338
78	78	0.0385
79	79	0.0675
8	8	0.369
80	80	0.564
81	81	0.139
82	82	0.0373
83	83	0.524
84	84	0.414
85	85	0.228
86	86	0.974
87	87	0.0585
88	88	0.868
89	89	0.388
9	9	0.569
90	90	0.618
91	91	0.36
92	92	0.897
93	93	0.0937
94	94	0.611
95	95	0.0466
96	96	0.693
97	97	0.0681
98	98	0.109
99	99	0.717

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10753

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:3493 signet ring cell adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101092 KATO-III cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
3493 (signet ring cell adenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100787 (gastric cancer cell line sample)
0101092 (KATO-III cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.23!266.38!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.19!154.88!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.72!518.04!KLF5;;chr1:201979743..201979762,+!p1@ELF3!1.72!51.23!ELF3;;chr11:34645791..34645836,+!p3@EHF!1.58!36.90!EHF;;chr21:36421535..36421610,-!p2@RUNX1!1.52!110.52!RUNX1;;chr11:34642656..34642667,+!p2@EHF!1.51!31.60!EHF;;chr19:1753498..1753519,+!p1@ONECUT3!1.51!31.31!ONECUT3;;chr17:70117153..70117174,+!p1@SOX9!1.50!304.17!SOX9;;chr7:63505799..63505904,+!p1@ZNF727!1.47!28.27!ZNF727;;chr17:46675558..46675577,-!p2@HOXB6!1.42!25.42!HOXB6;;chr3:12330560..12330579,+!p1@PPARG!1.40!27.87!PPARG;;chr6:106546808..106546833,+!p3@PRDM1!1.38!28.86!PRDM1;;chr1:209979467..209979494,-!p1@IRF6!1.37!25.32!IRF6;;chr17:46622440..46622477,-!p5@HOXB2!1.33!22.87!HOXB2;;chr19:50432453..50432468,+!p1@ATF5!1.28!982.19!ATF5;;chr1:214161272..214161322,+!p1@PROX1!1.25!23.75!PROX1;;chr1:201979703..201979721,+!p2@ELF3!1.25!16.78!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.25!16.59!GRHL2;;chr20:42984330..42984364,+!p2@HNF4A!1.23!16.10!HNF4A;;chr12:54378923..54378966,+!p1@HOXC10!1.19!14.43!HOXC10;;chr11:2292226..2292270,-!p1@ASCL2!1.18!14.13!ASCL2;;chr17:41622765..41622821,-!p2@ETV4!1.17!21.10!ETV4;;chr17:46667594..46667619,-!p1@HOXB3!1.14!12.96!HOXB3;;chr3:181429704..181429722,+!p1@SOX2!1.14!12.96!SOX2;;chr17:46682321..46682362,-!p1@HOXB6!1.13!12.56!HOXB6;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.13!12.37!ZNF676;;chr11:61520075..61520136,+!p1@C11orf9!1.12!25.81!C11orf9;;chr18:45663490..45663528,-!p2@ZBTB7C!1.12!12.27!ZBTB7C;;chr17:41623692..41623715,-!p1@ETV4!1.11!50.35!ETV4;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.37!PITX1;;chr11:65667846..65667868,-!p1@FOSL1!1.07!287.29!FOSL1;;chr17:46675420..46675465,-!p3@HOXB6!1.07!12.56!HOXB6;;chr12:54380404..54380433,+!p3@HOXC10!1.06!10.60!HOXC10;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.51!ETV4;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.33!HOXB7;;chr8:76319876..76319926,+!p1@HNF4G!1.05!10.21!HNF4G;;chr11:34535297..34535317,-!p1@ELF5!1.05!10.21!ELF5;;chr17:46667628..46667642,-!p2@HOXB3!1.02!9.52!HOXB3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.52!TFCP2L1;;chr5:174151612..174151633,+!p2@MSX2!1.01!9.32!MSX2;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.23!HOXC9;;chr3:181429741..181429767,+!p2@SOX2!1.01!9.13!SOX2;;chr1:23857698..23857733,-!p1@E2F2!1.00!16.88!E2F2;;chr17:46622205..46622218,-!p3@HOXB2!1.00!10.40!HOXB2;;chr8:11561684..11561751,+!p1@GATA4!0.99!8.83!GATA4;;chr20:22564895..22564910,-!p1@FOXA2!0.99!8.74!FOXA2;;chr12:52445218..52445237,+!p1@NR4A1!0.98!111.79!NR4A1;;chr19:22193731..22193751,-!p1@ZNF208!0.98!8.64!ZNF208;;chr3:32023232..32023273,+!p1@ZNF860!0.97!12.07!ZNF860;;chr20:18038521..18038571,-!p1@OVOL2!0.97!8.24!OVOL2;;chr9:110252035..110252057,-!p1@KLF4!0.96!134.27!KLF4;;chr5:174151553..174151610,+!p1@MSX2!0.96!13.84!MSX2;;chr20:50159198..50159299,-!p1@NFATC2!0.95!11.68!NFATC2;;chr7:156803329..156803362,-!p1@MNX1!0.95!7.85!MNX1;;chr6:126102292..126102329,+!p3@NCOA7!0.94!26.50!NCOA7;;chr6:106546731..106546755,+!p5@PRDM1!0.92!7.36!PRDM1;;chr16:85932760..85932775,+!p1@IRF8!0.92!7.36!IRF8;;chr5:134369879..134369898,-!p2@PITX1!0.91!7.16!PITX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.90!6.97!HOXC5;;chr6:36355431..36355466,-!p1@ETV7!0.89!6.67!ETV7;;chr11:65667884..65667895,-!p2@FOSL1!0.88!26.80!FOSL1;;chr12:54366894..54366922,+!p2@HOXC11!0.87!6.48!HOXC11;;chr6:106546786..106546802,+!p6@PRDM1!0.87!6.48!PRDM1;;chr11:34535332..34535347,-!p2@ELF5!0.87!6.38!ELF5;;chr21:38071430..38071456,+!p1@SIM2!0.87!6.38!SIM2;;chr17:46622229..46622257,-!p6@HOXB2!0.86!7.46!HOXB2;;chr1:2985760..2985774,+!p1@PRDM16!0.86!6.28!PRDM16;;chr18:19749541..19749557,+!p1@GATA6!0.85!20.22!GATA6;;chr13:73636252..73636307,+!p2@KLF5!0.85!7.26!KLF5;;chr12:77459306..77459365,-!p1@E2F7!0.84!79.89!E2F7;;chr6:31126291..31126399,+!p1@TCF19!0.84!59.58!TCF19;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.99!TBX20;;chr14:75988771..75988826,+!p1@BATF!0.83!7.95!BATF;;chr13:73636516..73636532,+!p3@KLF5!0.83!6.58!KLF5;;chr6:28048343..28048354,+!p1@ZNF165!0.83!5.79!ZNF165;;chr12:54380036..54380091,+!p4@HOXC10!0.82!5.59!HOXC10;;chr18:56532100..56532130,+!p1@ZNF532!0.81!10.60!ZNF532;;chr12:54367122..54367144,+!p4@HOXC11!0.81!5.50!HOXC11;;chr12:2986275..2986363,-!p1@FOXM1!0.80!57.32!FOXM1;;chr17:41622834..41622883,-!p6@ETV4!0.80!6.48!ETV4;;chr6:10412392..10412409,-!p4@TFAP2A!0.80!6.09!TFAP2A;;chr7:17338266..17338282,+!p1@AHR!0.79!60.85!AHR;;chr6:36355513..36355578,-!p2@ETV7!0.79!6.58!ETV7;;chr1:2461692..2461710,-!p1@HES5!0.79!5.20!HES5;;chr13:28494130..28494168,+!p1@PDX1!0.79!5.20!PDX1;;chr12:80084737..80084763,-!p3@PAWR!0.78!20.32!PAWR;;chr12:57914286..57914304,-!p1@DDIT3!0.77!196.30!DDIT3;;chr10:114710098..114710130,+!p2@TCF7L2!0.77!40.63!TCF7L2;;chr11:64764435..64764449,-!p1@BATF2!0.77!6.97!BATF2;;chr20:51588873..51588953,+!p1@TSHZ2!0.77!6.67!TSHZ2;;chr22:38597987..38598021,+!p2@MAFF!0.76!31.90!MAFF;;chr17:41277372..41277418,-!p1@BRCA1!0.76!18.75!BRCA1;;chr12:54366975..54367001,+!p1@HOXC11!0.76!4.71!HOXC11;;chr17:46622070..46622109,-!p1@HOXB2!0.75!10.99!HOXB2;;chr19:50435736..50435781,+!p3@ATF5!0.75!6.67!ATF5;;chr13:73636621..73636647,+!p4@KLF5!0.75!4.61!KLF5;;chr17:46675469..46675481,-!p4@HOXB6!0.75!4.61!HOXB6;;chr22:42229246..42229270,+!p2@SREBF2!0.74!62.72!SREBF2;;chr2:239148671..239148686,-!p1@HES6!0.74!18.06!HES6;;chr20:18037473..18037494,-!p3@OVOL2!0.74!4.51!OVOL2;;chr6:106546834..106546850,+!p4@PRDM1!0.74!4.51!PRDM1;;chr3:185826855..185826911,-!p1@ETV5!0.73!134.37!ETV5;;chr12:2986206..2986258,-!p2@FOXM1!0.73!29.35!FOXM1;;chr7:17338324..17338341,+!p3@AHR!0.73!16.10!AHR;;chr6:1312155..1312187,+!p2@FOXQ1!0.73!4.42!FOXQ1;;chr1:10856694..10856715,-!p3@CASZ1!0.73!4.42!CASZ1;;chr1:209979411..209979433,-!p2@IRF6!0.73!4.42!IRF6;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.32!ETV4;;chr17:7197911..7197964,-!p1@YBX2!0.73!4.32!YBX2;;chr6:126102254..126102289,+!p5@NCOA7!0.72!12.76!NCOA7;;chr17:46621937..46621966,-!p2@HOXB2!0.72!12.47!HOXB2;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.22!TFAP2A;;chr6:87923426..87923456,+!p13@ZNF292!0.72!4.22!ZNF292;;chr17:36105042..36105060,-!p1@HNF1B!0.70!4.02!HNF1B;;chr17:46675539..46675551,-!p7@HOXB6!0.69!3.93!HOXB6;;chr13:41593425..41593480,-!p1@ELF1!0.68!27.38!ELF1;;chr14:38064429..38064486,-!p1@FOXA1!0.68!3.83!FOXA1;;chr19:46367576..46367592,+!p1@FOXA3!0.68!3.83!FOXA3;;chr6:10413188..10413249,-!p7@TFAP2A!0.68!3.83!TFAP2A;;chr17:46703942..46703964,-!p4@HOXB9!0.67!3.73!HOXB9;;chr11:34643638..34643667,+!p8@EHF!0.67!3.73!EHF;;chr12:54379136..54379150,+!p4@HOXC5!0.67!3.73!HOXC5;;chr12:54379029..54379057,+!p2@HOXC10!0.67!3.63!HOXC10;;chr17:46806067..46806097,-!p1@HOXB13!0.67!3.63!HOXB13;;chr1:10856639..10856662,-!p2@CASZ1!0.67!3.63!CASZ1;;chr2:171571931..171571959,+!p3@SP5!0.67!3.63!SP5;;chr17:46675619..46675642,-!p5@HOXB6!0.66!3.53!HOXB6;;chr19:13135582..13135600,+!p3@NFIX!0.66!3.53!NFIX;;chr12:54366949..54366973,+!p3@HOXC11!0.66!3.53!HOXC11;;chr6:106534230..106534254,+!p2@PRDM1!0.65!9.72!PRDM1;;chr1:43148855..43148908,+!p4@YBX1!0.65!5.79!YBX1;;chr17:46622114..46622138,-!p4@HOXB2!0.65!5.69!HOXB2;;chr12:66218003..66218018,+!p9@HMGA2!0.65!4.42!HMGA2;;chr17:36105074..36105086,-!p2@HNF1B!0.65!3.44!HNF1B;;chr13:45010939..45011033,-!p1@TSC22D1!0.64!260.20!TSC22D1;;chr7:148581327..148581347,-!p2@EZH2!0.64!12.96!EZH2;;chr22:42229210..42229229,+!p3@SREBF2!0.64!8.74!SREBF2;;chr3:14058794..14058815,+!p1@TPRXL!0.64!3.34!TPRXL;;chr13:27998831..27998851,+!p2@GTF3A!0.63!22.77!GTF3A;;chr19:19729477..19729542,-!p1@PBX4!0.63!7.75!PBX4;;chr1:10754477..10754517,-!p1@CASZ1!0.63!5.89!CASZ1;;chr8:41508327..41508355,-!p1@NKX6-3!0.63!3.24!NKX6-3;;chr3:141087393..141087426,+!p3@ZBTB38!0.62!14.82!ZBTB38;;chr19:21203481..21203504,+!p2@ZNF430!0.62!8.34!ZNF430;;chr1:2985726..2985752,+!p2@PRDM16!0.62!3.14!PRDM16;;chr11:2291814..2291825,-!p2@ASCL2!0.62!3.14!ASCL2;;chr8:102504690..102504704,+!p3@GRHL2!0.62!3.14!GRHL2;;chr6:34204921..34204939,+!p3@HMGA1!0.61!111.60!HMGA1;;chr3:141087339..141087387,+!p2@ZBTB38!0.61!37.89!ZBTB38;;chr9:99180617..99180658,-!p1@ZNF367!0.61!7.66!ZNF367;;chr17:79885633..79885645,-!p4@MAFG!0.61!5.59!MAFG;;chr9:110250697..110250738,-!p2@KLF4!0.61!3.73!KLF4;;chr11:19263160..19263176,-!p1@E2F8!0.61!3.73!E2F8;;chr13:45009301..45009320,-!p7@TSC22D1!0.61!3.04!TSC22D1;;chr17:46132044..46132080,+!p4@NFE2L1!0.61!3.04!NFE2L1;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.04!HOXB7;;chr17:46688334..46688385,-!p1@HOXB7!0.60!4.61!HOXB7;;chr1:151804244..151804310,-!p1@RORC!0.60!2.94!RORC;;chr5:131826457..131826514,-!p1@IRF1!0.59!139.57!IRF1;;chr7:148581360..148581425,-!p1@EZH2!0.59!17.18!EZH2;;chr1:158985493..158985535,+!p4@IFI16!0.59!4.81!IFI16;;chr14:37131058..37131139,+!p1@PAX9!0.59!2.85!PAX9;;chr5:133450458..133450469,+!p4@TCF7!0.59!2.85!TCF7;;chr20:32274179..32274213,-!p1@E2F1!0.58!22.48!E2F1;;chr2:238600933..238600985,+!p3@LRRFIP1!0.58!18.16!LRRFIP1;;chr6:106534192..106534224,+!p1@PRDM1!0.58!9.13!PRDM1;;chr17:79885537..79885554,-!p2@MAFG!0.58!5.99!MAFG;;chr20:32274150..32274166,-!p2@E2F1!0.58!5.79!E2F1;;chr19:22817119..22817145,+!p1@ZNF492!0.58!5.20!ZNF492;;chr12:3068544..3068597,+!p1@TEAD4!0.57!20.02!TEAD4;;chr5:76383070..76383117,-!p3@ZBED3!0.57!6.18!ZBED3;;chr17:38020392..38020477,-!p1@IKZF3!0.57!2.75!IKZF3;;chr6:34204672..34204692,+!p1@HMGA1!0.56!373.27!HMGA1;;chr12:54772960..54773015,-!p3@ZNF385A!0.56!15.41!ZNF385A;;chr5:133450365..133450444,+!p1@TCF7!0.56!14.72!TCF7;;chr1:23857325..23857416,-!p2@E2F2!0.56!3.24!E2F2;;chr20:22565370..22565388,-!p2@FOXA2!0.56!2.65!FOXA2;;chr7:57509877..57509895,+!p1@ZNF716!0.56!2.65!ZNF716;;chr3:12329397..12329433,+!p2@PPARG!0.55!6.67!PPARG;;chr3:185784049..185784050,-!p7@ETV5!0.55!2.55!ETV5;;chr4:38665810..38665827,+!p1@KLF3!0.54!45.84!KLF3;;chr3:52001448..52001478,-!p2@PCBP4!0.54!43.78!PCBP4;;chrX:46404811..46404869,-!p1@ZNF674!0.54!11.09!ZNF674;;chr2:46524897..46524911,+!p2@EPAS1!0.54!8.24!EPAS1;;chr5:76383133..76383186,-!p2@ZBED3!0.54!5.89!ZBED3;;chr19:22235279..22235301,+!p1@ZNF257!0.54!5.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+|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0100787,FF:0101120
 |fonse_cell_line_closure=FF:0100787,FF:0101120

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FF:10436-106E4: Difference between revisions

From FANTOM5_SSTAR

Revision as of 18:59, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0