FFCP PHASE1:Hg19::chrX:135614364..135614387,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0000066!1.30e-19!254;CL:0002076!4.22e-18!43;CL:0000223!1.61e-13!59;CL:0002159!5.11e-10!13;CL:0002368!2.68e-09!13;CL:0000244!5.23e-07!4;CL:0000731!5.23e-07!4 | |ontology_enrichment_celltype=CL:0000066!1.30e-19!254;CL:0002076!4.22e-18!43;CL:0000223!1.61e-13!59;CL:0002159!5.11e-10!13;CL:0002368!2.68e-09!13;CL:0000244!5.23e-07!4;CL:0000731!5.23e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.96e-17;42!CL:0000349;4.48e-13;19!CL:0002368;1.45e-10;13!CL:0002159;1.52e-10;14!CL:0000244;3.67e-09;4!CL:0000731;3.67e-09;4!CL:0002541;3.49e-08;3!CL:0002577;5.39e-08;3!CL:0002202;2.54e-07;9!CL:0002632;2.54e-07;9!CL:0000239;3.59e-07;3!CL:1000615;3.59e-07;3!CL:0002306;3.59e-07;3!CL:1000507;3.64e-07;10!CL:1000494;3.64e-07;10!CL:0002251;3.66e-07;20!CL:0002621;9.78e-07;3 | |ontology_enrichment_celltype_v019=CL:0002076;1.96e-17;42!CL:0000349;4.48e-13;19!CL:0002368;1.45e-10;13!CL:0002159;1.52e-10;14!CL:0000244;3.67e-09;4!CL:0000731;3.67e-09;4!CL:0002541;3.49e-08;3!CL:0002577;5.39e-08;3!CL:0002202;2.54e-07;9!CL:0002632;2.54e-07;9!CL:0000239;3.59e-07;3!CL:1000615;3.59e-07;3!CL:0002306;3.59e-07;3!CL:1000507;3.64e-07;10!CL:1000494;3.64e-07;10!CL:0002251;3.66e-07;20!CL:0002621;9.78e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.13e-21,42;CL:0000066,1.21e-20,253;CL:0000223,4.05e-17,58;CL:0000349,4.54e-13,19;CL:0002159,1.53e-10,14;CL:0002368,1.68e-10,13;CL:0000244,3.79e-09,4;CL:0000731,3.79e-09,4;CL:0002541,3.49e-08,3;CL:0002577,5.40e-08,3;CL:0002202,3.01e-07,9;CL:0002632,3.01e-07,9;CL:0000239,3.36e-07,3;CL:1000615,3.36e-07,3;CL:0002306,3.36e-07,3;CL:1000507,3.44e-07,10;CL:1000494,3.44e-07,10;CL:0002251,3.93e-07,20;CL:0002077,4.01e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000223;1.47e-09;58 | |ontology_enrichment_development_v019=CL:0000223;1.47e-09;58 | ||
|ontology_enrichment_disease=DOID:1749!3.84e-10!14 | |ontology_enrichment_disease=DOID:1749!3.84e-10!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.57e-16!169;UBERON:0000925!1.57e-16!169;UBERON:0006595!1.57e-16!169;UBERON:0005631!2.08e-16!14;UBERON:0000158!2.08e-16!14;UBERON:0001008!6.27e-13!45;UBERON:0003124!1.86e-12!7;UBERON:0006554!4.20e-12!44;UBERON:0000464!2.11e-11!104;UBERON:0000077!5.24e-10!130;UBERON:0000161!9.46e-10!35;UBERON:0001004!1.03e-09!72;UBERON:0001007!1.16e-09!155;UBERON:0001555!1.16e-09!155;UBERON:0007026!1.16e-09!155;UBERON:0003064!1.33e-09!37;UBERON:0000478!1.53e-09!24;UBERON:0005156!1.62e-09!59;UBERON:0000990!1.62e-09!59;UBERON:0005911!2.29e-09!82;UBERON:0000466!5.80e-09!126;UBERON:0004175!5.87e-09!25;UBERON:0000365!4.21e-08!5;UBERON:0003133!7.27e-08!48;UBERON:0001987!8.68e-08!4;UBERON:0004340!8.68e-08!4;UBERON:0005153!1.80e-07!37;UBERON:0001046!2.93e-07!19;UBERON:0004921!3.48e-07!129;UBERON:0004185!3.48e-07!129;UBERON:0005177!4.41e-07!107;UBERON:0000058!5.70e-07!26;UBERON:0004876!6.23e-07!20;UBERON:0000065!9.93e-07!53 | |ontology_enrichment_uberon=UBERON:0004119!1.57e-16!169;UBERON:0000925!1.57e-16!169;UBERON:0006595!1.57e-16!169;UBERON:0005631!2.08e-16!14;UBERON:0000158!2.08e-16!14;UBERON:0001008!6.27e-13!45;UBERON:0003124!1.86e-12!7;UBERON:0006554!4.20e-12!44;UBERON:0000464!2.11e-11!104;UBERON:0000077!5.24e-10!130;UBERON:0000161!9.46e-10!35;UBERON:0001004!1.03e-09!72;UBERON:0001007!1.16e-09!155;UBERON:0001555!1.16e-09!155;UBERON:0007026!1.16e-09!155;UBERON:0003064!1.33e-09!37;UBERON:0000478!1.53e-09!24;UBERON:0005156!1.62e-09!59;UBERON:0000990!1.62e-09!59;UBERON:0005911!2.29e-09!82;UBERON:0000466!5.80e-09!126;UBERON:0004175!5.87e-09!25;UBERON:0000365!4.21e-08!5;UBERON:0003133!7.27e-08!48;UBERON:0001987!8.68e-08!4;UBERON:0004340!8.68e-08!4;UBERON:0005153!1.80e-07!37;UBERON:0001046!2.93e-07!19;UBERON:0004921!3.48e-07!129;UBERON:0004185!3.48e-07!129;UBERON:0005177!4.41e-07!107;UBERON:0000058!5.70e-07!26;UBERON:0004876!6.23e-07!20;UBERON:0000065!9.93e-07!53 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.24e-14;10!UBERON:0000158;2.24e-14;10!UBERON:0000478;6.82e-14;24!UBERON:0006554;2.47e-12;30!UBERON:0001008;2.47e-12;30!UBERON:0000365;1.07e-10;5!UBERON:0001987;3.14e-10;4!UBERON:0000486;5.30e-10;12!UBERON:0003350;5.01e-09;8!UBERON:0005910;7.69e-09;6!UBERON:0000305;2.32e-08;7!UBERON:0003124;3.49e-08;3!UBERON:0000920;3.49e-08;3!UBERON:0005911;7.51e-08;36!UBERON:0003929;1.47e-07;7!UBERON:0000077;2.68e-07;27!UBERON:0000485;3.05e-07;7!UBERON:0006853;3.59e-07;3!UBERON:0007685;3.59e-07;3!UBERON:0004134;3.59e-07;3!UBERON:0004211;3.64e-07;10!UBERON:0009773;3.64e-07;10!UBERON:0001231;3.64e-07;10!UBERON:0004810;3.64e-07;10!UBERON:0001949;9.78e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0005631;2.24e-14;10!UBERON:0000158;2.24e-14;10!UBERON:0000478;6.82e-14;24!UBERON:0006554;2.47e-12;30!UBERON:0001008;2.47e-12;30!UBERON:0000365;1.07e-10;5!UBERON:0001987;3.14e-10;4!UBERON:0000486;5.30e-10;12!UBERON:0003350;5.01e-09;8!UBERON:0005910;7.69e-09;6!UBERON:0000305;2.32e-08;7!UBERON:0003124;3.49e-08;3!UBERON:0000920;3.49e-08;3!UBERON:0005911;7.51e-08;36!UBERON:0003929;1.47e-07;7!UBERON:0000077;2.68e-07;27!UBERON:0000485;3.05e-07;7!UBERON:0006853;3.59e-07;3!UBERON:0007685;3.59e-07;3!UBERON:0004134;3.59e-07;3!UBERON:0004211;3.64e-07;10!UBERON:0009773;3.64e-07;10!UBERON:0001231;3.64e-07;10!UBERON:0004810;3.64e-07;10!UBERON:0001949;9.78e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001008,8.28e-23,48;UBERON:0005631,1.30e-22,14;UBERON:0000158,1.30e-22,14;UBERON:0006554,1.48e-21,47;UBERON:0003124,1.01e-16,7;UBERON:0000478,6.94e-14,24;UBERON:0004119,4.07e-13,160;UBERON:0000925,4.07e-13,160;UBERON:0006595,4.07e-13,160;UBERON:0000365,1.15e-10,5;UBERON:0001987,3.14e-10,4;UBERON:0004340,3.14e-10,4;UBERON:0005911,3.70e-09,82;UBERON:0003350,6.00e-09,8;UBERON:0005910,8.17e-09,6;UBERON:0004923,1.82e-08,66;UBERON:0004175,2.34e-08,25;UBERON:0000305,2.35e-08,7;UBERON:0000489,2.58e-08,31;UBERON:0000920,3.49e-08,3;UBERON:0005177,9.31e-08,101;UBERON:0000161,1.49e-07,36;UBERON:0002113,2.15e-07,26;UBERON:0003918,2.15e-07,26;UBERON:0011143,2.15e-07,26;UBERON:0005095,2.15e-07,26;UBERON:0007687,2.15e-07,26;UBERON:0006555,2.90e-07,16;UBERON:0004819,2.90e-07,16;UBERON:0004871,3.06e-07,8;UBERON:0006853,3.36e-07,3;UBERON:0007685,3.36e-07,3;UBERON:0004134,3.36e-07,3;UBERON:0004810,3.44e-07,10;UBERON:0001046,3.54e-07,19;UBERON:0003975,8.60e-07,22 | |||
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| ||
|short_description=p1@VGLL1 | |short_description=p1@VGLL1 | ||
}} | }} |
Revision as of 01:59, 19 November 2012
Short description: | p1@VGLL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_VGLL1_5end |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | 53bp_to_ENST00000370634, ENST00000430688, NM_016267, uc004ezy.2_5end |
EntrezGene: | VGLL1 |
HGNC: | 20985 |
UniProt: | Q99990E9PHC2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.13e-21 | 42 |
epithelial cell | 1.21e-20 | 253 |
endodermal cell | 4.05e-17 | 58 |
extraembryonic cell | 4.54e-13 | 19 |
general ecto-epithelial cell | 1.53e-10 | 14 |
respiratory epithelial cell | 1.68e-10 | 13 |
transitional epithelial cell | 3.79e-09 | 4 |
urothelial cell | 3.79e-09 | 4 |
chorionic membrane mesenchymal stem cell | 3.49e-08 | 3 |
placental epithelial cell | 5.40e-08 | 3 |
epithelial cell of tracheobronchial tree | 3.01e-07 | 9 |
epithelial cell of lower respiratory tract | 3.01e-07 | 9 |
brush border epithelial cell | 3.36e-07 | 3 |
kidney cortex tubule cell | 3.36e-07 | 3 |
epithelial cell of proximal tubule | 3.36e-07 | 3 |
kidney tubule cell | 3.44e-07 | 10 |
nephron tubule epithelial cell | 3.44e-07 | 10 |
epithelial cell of alimentary canal | 3.93e-07 | 20 |
ecto-epithelial cell | 4.01e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
renal system | 8.28e-23 | 48 |
extraembryonic membrane | 1.30e-22 | 14 |
membranous layer | 1.30e-22 | 14 |
urinary system structure | 1.48e-21 | 47 |
chorion | 1.01e-16 | 7 |
extraembryonic structure | 6.94e-14 | 24 |
endoderm-derived structure | 4.07e-13 | 160 |
endoderm | 4.07e-13 | 160 |
presumptive endoderm | 4.07e-13 | 160 |
urothelium | 1.15e-10 | 5 |
placenta | 3.14e-10 | 4 |
allantois | 3.14e-10 | 4 |
endo-epithelium | 3.70e-09 | 82 |
epithelium of mucosa | 6.00e-09 | 8 |
transitional epithelium | 8.17e-09 | 6 |
organ component layer | 1.82e-08 | 66 |
internal genitalia | 2.34e-08 | 25 |
amnion | 2.35e-08 | 7 |
cavitated compound organ | 2.58e-08 | 31 |
egg chorion | 3.49e-08 | 3 |
trunk region element | 9.31e-08 | 101 |
orifice | 1.49e-07 | 36 |
kidney | 2.15e-07 | 26 |
kidney mesenchyme | 2.15e-07 | 26 |
upper urinary tract | 2.15e-07 | 26 |
kidney rudiment | 2.15e-07 | 26 |
kidney field | 2.15e-07 | 26 |
excretory tube | 2.90e-07 | 16 |
kidney epithelium | 2.90e-07 | 16 |
somatic layer of lateral plate mesoderm | 3.06e-07 | 8 |
renal cortex tubule | 3.36e-07 | 3 |
region of nephron tubule | 3.36e-07 | 3 |
proximal tubule | 3.36e-07 | 3 |
nephron tubule epithelium | 3.44e-07 | 10 |
hindgut | 3.54e-07 | 19 |
internal female genitalia | 8.60e-07 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.