FFCP PHASE1:Hg19::chr1:230883128..230883162,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10753 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1486 | |||
|TSSclassifier=strong | |||
|UniProt=O14815,Q6PIV8 | |||
|association_with_transcript=0bp_to_ENST00000271971,ENST00000354537,NM_006615,NM_016452,uc001htz.1,uc001hua.1,uc009xfg.1_5end | |||
|coexpression_cluster_id=C3948 | |||
|description=CAGE_peak_1_at_CAPN9_5end | |||
|id=chr1:230883128..230883162,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000313;1.91e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,2.22e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0006242;9.73e-09;1!UBERON:0001045;1.27e-08;1!UBERON:0005425;1.91e-08;1!UBERON:0006595;1.90e-07;86 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;1.59e-08;4!DOID:1612;1.59e-08;4!DOID:2152;1.91e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.53e-08,4;DOID:1612,1.53e-08,4;DOID:2152,2.22e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0004921!6.37e-13!129;UBERON:0004185!6.37e-13!129;UBERON:0001007!1.52e-11!155;UBERON:0001555!1.52e-11!155;UBERON:0007026!1.52e-11!155;UBERON:0007023!2.98e-11!115;UBERON:0005409!3.75e-11!35;UBERON:0004119!7.26e-11!169;UBERON:0000925!7.26e-11!169;UBERON:0006595!7.26e-11!169;UBERON:0000059!8.41e-11!11;UBERON:0000160!2.58e-10!27;UBERON:0001155!2.41e-09!9;UBERON:0003127!5.35e-08!2;UBERON:0001042!1.04e-07!10;UBERON:0009145!1.04e-07!10;UBERON:0000341!1.16e-07!2;UBERON:0000077!1.30e-07!130;UBERON:0005162!2.63e-07!2;UBERON:0000122!2.63e-07!2;UBERON:0002360!4.38e-07!2;UBERON:0000094!4.38e-07!2;UBERON:0007645!4.38e-07!2;UBERON:0006562!5.58e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;4.66e-31;22!UBERON:0000160;9.34e-26;17!UBERON:0004921;1.41e-22;33!UBERON:0000059;4.60e-17;11!UBERON:0003127;1.02e-15;2!UBERON:0002108;3.13e-14;4!UBERON:0001155;1.38e-13;9!UBERON:0001555;3.42e-09;54!UBERON:0002171;5.70e-09;1!UBERON:0006518;5.70e-09;1!UBERON:0008949;5.70e-09;1!UBERON:0000101;5.70e-09;1!UBERON:0002167;5.70e-09;1!UBERON:0002372;1.27e-08;1!UBERON:0001154;1.27e-08;1!UBERON:0001153;1.27e-08;1!UBERON:0009854;1.27e-08;1!UBERON:0001961;1.27e-08;1!UBERON:0001744;1.27e-08;1!UBERON:0001042;1.27e-08;1!UBERON:0001735;1.27e-08;1!UBERON:0000941;1.91e-08;1!UBERON:0004911;1.91e-08;1!UBERON:0001785;1.91e-08;1!UBERON:0002464;1.91e-08;1!UBERON:0004904;1.91e-08;1!UBERON:0001021;1.91e-08;1!UBERON:0001007;4.66e-07;81!UBERON:0004907;6.17e-07;5!UBERON:0000945;6.65e-07;5!UBERON:0010039;6.65e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.05e-27,25;UBERON:0000160,1.03e-25,17;UBERON:0000059,4.83e-17,11;UBERON:0003127,9.16e-16,2;UBERON:0004921,7.59e-15,118;UBERON:0002108,3.35e-14,4;UBERON:0001155,1.45e-13,9;UBERON:0001007,4.10e-13,145;UBERON:0001555,4.10e-13,145;UBERON:0007026,4.10e-13,145;UBERON:0004119,1.42e-11,160;UBERON:0000925,1.42e-11,160;UBERON:0006595,1.42e-11,160;UBERON:0002171,5.70e-09,1;UBERON:0006518,5.70e-09,1;UBERON:0008949,5.70e-09,1;UBERON:0000101,5.70e-09,1;UBERON:0002167,5.70e-09,1;UBERON:0002372,1.22e-08,1;UBERON:0001961,1.22e-08,1;UBERON:0001744,1.22e-08,1;UBERON:0001735,1.22e-08,1;UBERON:0001154,1.42e-08,1;UBERON:0001153,1.42e-08,1;UBERON:0001045,1.42e-08,1;UBERON:0000941,1.78e-08,1;UBERON:0001785,1.78e-08,1;UBERON:0002464,1.78e-08,1;UBERON:0004904,1.78e-08,1;UBERON:0001021,1.78e-08,1;UBERON:0003902,1.78e-08,1;UBERON:0005425,1.78e-08,1;UBERON:0004911,2.22e-08,1;UBERON:0011216,2.87e-08,223;UBERON:0007023,4.17e-07,114;UBERON:0004907,6.45e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,7.90204397959275,12.0188062693282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560425719967636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0.891547074219827,0,0,0,0,0,0,0,0,18.7901613233914,1.19548792950642,3.03912307084262,0.251932747854276,0,0,0,0,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,8.95735737970654,5.04208117669033,29.9404771017476,0,0,0,0.134802265961354,0,0,0,0,0,0,13.308978765353,0,0.063186579628488,0,0,0,0,0,0,0,0,0.347119476670262,0,0,0,0,0,0,0,0.290967049465258,0,0.225980740780532,0,0,0,0.195551382734803,0,5.97668385270187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,2.32991899054908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31040978959853,5.03053776318931,9.94173732833269,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138314504928436,0,1.42769420259154,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0.39246546425257,0,0,16.4368569691709,0,0,0,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,1.00669888618013,1.07965256976767,0,0,0,0,0,0,0.198950775161368,0,0,0,0,7.56306749457858,7.6495846176385,15.0501534835687,0,0,0,0,0,0,0,0,0,0,0,0,30.6741283063537,0,0,0,0,0,13.225671012885,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,1.49263787330687,0.714193294391221,0,0.0620747142958579,0,0,0,0.435433495793923,0.342233301085281,3.43495470374396,3.65783247502649,6.32054677437425,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@CAPN9 | |||
}} |
Revision as of 00:41, 11 January 2014
Short description: | p1@CAPN9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CAPN9_5end |
Coexpression cluster: | C3948_stomach_colon_temporal_MCF7_rectum_duodenum_small |
Association with transcript: | 0bp_to_ENST00000271971, ENST00000354537, NM_006615, NM_016452, uc001htz.1, uc001hua.1, uc009xfg.1_5end |
EntrezGene: | CAPN9 |
HGNC: | 1486 |
UniProt: | O14815Q6PIV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 2.22e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 3.05e-27 | 25 |
intestine | 1.03e-25 | 17 |
large intestine | 4.83e-17 | 11 |
open tracheal system trachea | 9.16e-16 | 2 |
subdivision of digestive tract | 7.59e-15 | 118 |
small intestine | 3.35e-14 | 4 |
colon | 1.45e-13 | 9 |
digestive system | 4.10e-13 | 145 |
digestive tract | 4.10e-13 | 145 |
primitive gut | 4.10e-13 | 145 |
endoderm-derived structure | 1.42e-11 | 160 |
endoderm | 1.42e-11 | 160 |
presumptive endoderm | 1.42e-11 | 160 |
lower lobe of right lung | 5.70e-09 | 1 |
right lung lobe | 5.70e-09 | 1 |
lower lobe of lung | 5.70e-09 | 1 |
lobe of lung | 5.70e-09 | 1 |
right lung | 5.70e-09 | 1 |
tonsil | 1.22e-08 | 1 |
mucosa-associated lymphoid tissue | 1.22e-08 | 1 |
lymphoid tissue | 1.22e-08 | 1 |
tonsillar ring | 1.22e-08 | 1 |
vermiform appendix | 1.42e-08 | 1 |
caecum | 1.42e-08 | 1 |
midgut | 1.42e-08 | 1 |
cranial nerve II | 1.78e-08 | 1 |
cranial nerve | 1.78e-08 | 1 |
nerve trunk | 1.78e-08 | 1 |
nerve connecting eye with brain | 1.78e-08 | 1 |
nerve | 1.78e-08 | 1 |
retinal neural layer | 1.78e-08 | 1 |
presumptive neural retina | 1.78e-08 | 1 |
epithelium of female gonad | 2.22e-08 | 1 |
organ system subdivision | 2.87e-08 | 223 |
adult organism | 4.17e-07 | 114 |
lower digestive tract | 6.45e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.53e-08 | 4 |
breast cancer | 1.53e-08 | 4 |
ovary epithelial cancer | 2.22e-08 | 1 |