FFCP PHASE1:Hg19::chr19:48994556..48994562,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:48994556..48994562,- | |||
|id=chr19:48994556..48994562,- | |||
|ontology_enrichment_celltype=CL:1000507!5.86e-10!12;CL:1000494!5.86e-10!12;CL:1000449!5.86e-09!16;CL:0000066!1.09e-08!254;CL:1000497!9.87e-08!18;CL:0002518!9.87e-08!18;CL:0002076!1.52e-07!43;CL:0002681!5.45e-07!13;CL:0002584!5.45e-07!13;CL:0000239!6.23e-07!3;CL:1000615!6.23e-07!3;CL:0002306!6.23e-07!3;CL:0000068!8.67e-07!3;CL:0000069!8.67e-07!3;CL:0000307!8.67e-07!3;CL:0000377!8.67e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000239;4.02e-21;3!CL:1000615;4.02e-21;3!CL:0002306;4.02e-21;3!CL:0000307;4.02e-21;3!CL:1000507;2.99e-14;10!CL:1000494;2.99e-14;10!CL:0002681;5.56e-12;12!CL:0002584;5.56e-12;12!CL:1000449;1.05e-09;15!CL:0000575;4.34e-09;2!CL:1000497;1.25e-08;17!CL:0002518;1.25e-08;17!CL:0002202;1.13e-07;9!CL:0002632;1.13e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.17e-21,3;CL:1000615,2.17e-21,3;CL:0002306,2.17e-21,3;CL:0000068,5.47e-21,3;CL:0000069,5.47e-21,3;CL:0000307,5.47e-21,3;CL:0000377,5.47e-21,3;CL:1000507,2.67e-14,10;CL:1000494,2.67e-14,10;CL:0002681,5.06e-12,12;CL:0002584,5.06e-12,12;CL:1000449,9.76e-10,15;CL:0000575,4.34e-09,2;CL:1000497,1.17e-08,17;CL:0002518,1.17e-08,17;CL:0002202,1.25e-07,9;CL:0002632,1.25e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;4.02e-21;3!UBERON:0008425;1.78e-16;1 | |||
|ontology_enrichment_disease=DOID:5093!2.26e-09!4;DOID:1612!2.26e-09!4;DOID:299!1.83e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:5093;3.16e-35;4!DOID:1612;3.16e-35;4!DOID:6193;5.52e-17;1!DOID:3350;3.71e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,2.66e-35,4;DOID:1612,2.66e-35,4;DOID:6193,5.53e-17,1;DOID:3350,3.71e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0009773!5.86e-10!12;UBERON:0001231!5.86e-10!12;UBERON:0004810!5.86e-10!12;UBERON:0002113!1.63e-09!27;UBERON:0003918!1.63e-09!27;UBERON:0005095!1.63e-09!27;UBERON:0007687!1.63e-09!27;UBERON:0006554!2.43e-09!44;UBERON:0001008!4.97e-09!45;UBERON:0004211!5.86e-09!16;UBERON:0001285!5.86e-09!16;UBERON:0007684!5.86e-09!16;UBERON:0003220!5.86e-09!16;UBERON:0004208!5.86e-09!16;UBERON:0009569!8.34e-09!113;UBERON:0000489!1.18e-08!32;UBERON:0005177!1.98e-08!107;UBERON:0006555!2.62e-08!17;UBERON:0005103!2.62e-08!17;UBERON:0000083!2.62e-08!17;UBERON:0009201!2.62e-08!17;UBERON:0004819!2.62e-08!17;UBERON:0006553!2.62e-08!17;UBERON:0003074!2.62e-08!17;UBERON:0003060!2.62e-08!17;UBERON:0000080!9.87e-08!18;UBERON:0002120!9.87e-08!18;UBERON:0004875!9.87e-08!18;UBERON:0005721!9.87e-08!18;UBERON:0005754!9.87e-08!18;UBERON:0007297!9.87e-08!18;UBERON:0003103!1.80e-07!69;UBERON:0000464!1.83e-07!104;UBERON:0000020!2.78e-07!23;UBERON:0000058!4.32e-07!26;UBERON:0001225!5.45e-07!13;UBERON:0008987!5.45e-07!13;UBERON:0006853!6.23e-07!3;UBERON:0007685!6.23e-07!3;UBERON:0004134!6.23e-07!3;UBERON:0001032!7.03e-07!24;UBERON:0004456!7.03e-07!24;UBERON:0003064!7.51e-07!37;UBERON:0003126!8.28e-07!7;UBERON:0001005!8.28e-07!7;UBERON:0004876!9.32e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0006853;4.02e-21;3!UBERON:0007685;4.02e-21;3!UBERON:0004134;4.02e-21;3!UBERON:0000310;1.58e-14;10!UBERON:0004211;2.99e-14;10!UBERON:0009773;2.99e-14;10!UBERON:0001231;2.99e-14;10!UBERON:0004810;2.99e-14;10!UBERON:0001443;2.89e-13;11!UBERON:0001225;5.56e-12;12!UBERON:0008987;5.56e-12;12!UBERON:0001851;1.05e-09;15!UBERON:0006555;1.05e-09;15!UBERON:0000353;1.05e-09;15!UBERON:0004819;1.05e-09;15!UBERON:0001285;1.05e-09;15!UBERON:0007684;1.05e-09;15!UBERON:0003126;1.29e-09;7!UBERON:0001005;1.29e-09;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006853,2.17e-21,3;UBERON:0007685,2.17e-21,3;UBERON:0004134,2.17e-21,3;UBERON:0000310,1.47e-14,10;UBERON:0004810,2.67e-14,10;UBERON:0001443,2.71e-13,11;UBERON:0001225,5.06e-12,12;UBERON:0008987,5.06e-12,12;UBERON:0001851,9.76e-10,15;UBERON:0004211,9.76e-10,15;UBERON:0009773,9.76e-10,15;UBERON:0000353,9.76e-10,15;UBERON:0001231,9.76e-10,15;UBERON:0001285,9.76e-10,15;UBERON:0007684,9.76e-10,15;UBERON:0004208,9.76e-10,15;UBERON:0003126,1.47e-09,7;UBERON:0001005,1.47e-09,7;UBERON:0006555,3.65e-09,16;UBERON:0004819,3.65e-09,16;UBERON:0009569,4.56e-08,112;UBERON:0000915,2.29e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.263504357079378,0,0,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.265059536642971,0,0.310983165046111,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370353780634118,0,0,0,0.811512834825538,0.117408694235822,0,0,0,2.37061319387782,6.00940313466411,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0.300946099727719,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0.902399225814824,1.07821471946181,0.784349769176855,0,0.422206515571503,0,0,0,0,0.541892875087706,0,1.52925763827023,1.66215201785745,0.223874754722178,0,0,0.512900250232778,0.656029291399411,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,1.34060455107157,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0.144269212976445,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0.71623345421307,0,2.15012491469462,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0.179736702294654,0,0,0,0,0,0,0,0,0.7812832832557,1.39935999993913,0,0,0.508507300585533,0.472775363535873,0,0.291604613383254,0,0,0,0,0,0,0,0,0.139423744278603,0.153900517007594,0,0,0,0.108647371922008,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0.335643173951685,0,0,0.421996129056054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0.853828638089378,0,1.21491816834592,0.391969589657511,0,0,3.0957485844891,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0.977756913674015,0.240476460754601,0.213452994739353,0.39961921916426,0,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0.472834243795189,0.157363764404994,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,0,0.171086837884329,0,0.106787412567695,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0.115525666150338,0,0,0,0.150420656698515,0.20170506870352,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0.535701835878287,0.336283722218824,0,0,0,0.115233987555779,0,0,0,1.41832609060762,0.111231401892069,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0.464965701472501,0,0,0,0,0.691259661814092,0,0,0,0,0.22910686854405,0,0,0,0.196300467230486,0.487671699929078,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0.252332849670158,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.23806443146374,0,0.0620747142958579,0,0.25458863311266,0,0,0.342233301085281,0.5388164241167,0.215166616178029,0.332660356546013,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:48994556..48994562,- | |||
}} |
Revision as of 00:18, 21 January 2014
Short description: | p@chr19:48994556..48994562, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:48994556..48994562, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.17e-21 | 3 |
kidney cortex tubule cell | 2.17e-21 | 3 |
epithelial cell of proximal tubule | 2.17e-21 | 3 |
duct epithelial cell | 5.47e-21 | 3 |
branched duct epithelial cell | 5.47e-21 | 3 |
tracheal epithelial cell | 5.47e-21 | 3 |
tracheoblast | 5.47e-21 | 3 |
kidney tubule cell | 2.67e-14 | 10 |
nephron tubule epithelial cell | 2.67e-14 | 10 |
kidney cortical cell | 5.06e-12 | 12 |
renal cortical epithelial cell | 5.06e-12 | 12 |
epithelial cell of nephron | 9.76e-10 | 15 |
corneal epithelial cell | 4.34e-09 | 2 |
kidney cell | 1.17e-08 | 17 |
kidney epithelial cell | 1.17e-08 | 17 |
epithelial cell of tracheobronchial tree | 1.25e-07 | 9 |
epithelial cell of lower respiratory tract | 1.25e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
renal cortex tubule | 2.17e-21 | 3 |
region of nephron tubule | 2.17e-21 | 3 |
proximal tubule | 2.17e-21 | 3 |
breast | 1.47e-14 | 10 |
nephron tubule epithelium | 2.67e-14 | 10 |
chest | 2.71e-13 | 11 |
cortex of kidney | 5.06e-12 | 12 |
renal parenchyma | 5.06e-12 | 12 |
cortex | 9.76e-10 | 15 |
nephron epithelium | 9.76e-10 | 15 |
renal tubule | 9.76e-10 | 15 |
parenchyma | 9.76e-10 | 15 |
nephron tubule | 9.76e-10 | 15 |
nephron | 9.76e-10 | 15 |
uriniferous tubule | 9.76e-10 | 15 |
nephrogenic mesenchyme | 9.76e-10 | 15 |
trachea | 1.47e-09 | 7 |
respiratory airway | 1.47e-09 | 7 |
excretory tube | 3.65e-09 | 16 |
kidney epithelium | 3.65e-09 | 16 |
subdivision of trunk | 4.56e-08 | 112 |
thoracic segment of trunk | 2.29e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.66e-35 | 4 |
breast cancer | 2.66e-35 | 4 |
epithelioid sarcoma | 5.53e-17 | 1 |
mesenchymal cell neoplasm | 3.71e-09 | 2 |