FFCP PHASE1:Hg19::chr19:10688031..10688042,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:10688031..10688042,-
|short_description=p@chr19:10688031..10688042,-
|description=CAGE_peak_at_chr19:10688031..10688042,-
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:10688031..10688042,- | |||
|coexpression_cluster_id=C2474 | |||
|description=CAGE_peak_at_chr19:10688031..10688042,- | |||
|id=chr19:10688031..10688042,- | |||
|ontology_enrichment_celltype=CL:0000066!2.43e-17!254;CL:0000077!2.88e-17!19;CL:1000497!5.95e-15!18;CL:0002518!5.95e-15!18;CL:1000507!1.40e-13!12;CL:1000494!1.40e-13!12;CL:1000449!7.39e-12!16;CL:0002681!3.44e-07!13;CL:0002584!3.44e-07!13;CL:0002150!4.58e-07!3;CL:0000861!4.58e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.29e-15;10!CL:1000494;1.29e-15;10!CL:1000497;8.76e-13;17!CL:0002518;8.76e-13;17!CL:1000449;2.40e-10;15!CL:0000239;4.00e-09;3!CL:1000615;4.00e-09;3!CL:0002306;4.00e-09;3!CL:0002553;1.85e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,9.62e-16,10;CL:1000494,9.62e-16,10;CL:1000497,7.56e-13,17;CL:0002518,7.56e-13,17;CL:0000066,6.94e-12,253;CL:1000449,1.99e-10,15;CL:0000239,3.39e-09,3;CL:1000615,3.39e-09,3;CL:0002306,3.39e-09,3;CL:0002553,1.30e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.46e-16;29!UBERON:0003104;2.26e-09;31 | |||
|ontology_enrichment_disease=DOID:305!8.25e-18!106;DOID:14566!1.06e-17!239;DOID:162!5.77e-16!235;DOID:0050687!6.50e-15!143;DOID:193!4.33e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:4468;7.84e-14;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.54e-17,106;DOID:4468,5.17e-14,2;DOID:0050687,5.40e-12,143;DOID:162,1.85e-08,235;DOID:14566,3.42e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.50e-19!9;UBERON:0005172!1.86e-17!55;UBERON:0005173!1.86e-17!55;UBERON:0002417!2.53e-16!61;UBERON:0000916!2.53e-16!61;UBERON:0002113!1.37e-14!27;UBERON:0003918!1.37e-14!27;UBERON:0005095!1.37e-14!27;UBERON:0007687!1.37e-14!27;UBERON:0009773!1.40e-13!12;UBERON:0001231!1.40e-13!12;UBERON:0004810!1.40e-13!12;UBERON:0004211!7.39e-12!16;UBERON:0001285!7.39e-12!16;UBERON:0007684!7.39e-12!16;UBERON:0003220!7.39e-12!16;UBERON:0004208!7.39e-12!16;UBERON:0000489!1.16e-11!32;UBERON:0001851!3.74e-11!16;UBERON:0006555!5.12e-11!17;UBERON:0005103!5.12e-11!17;UBERON:0000083!5.12e-11!17;UBERON:0009201!5.12e-11!17;UBERON:0004819!5.12e-11!17;UBERON:0006553!5.12e-11!17;UBERON:0003074!5.12e-11!17;UBERON:0003060!5.12e-11!17;UBERON:0000080!2.85e-10!18;UBERON:0002120!2.85e-10!18;UBERON:0004875!2.85e-10!18;UBERON:0005721!2.85e-10!18;UBERON:0005754!2.85e-10!18;UBERON:0007297!2.85e-10!18;UBERON:0001557!8.11e-10!19;UBERON:0006554!1.24e-09!44;UBERON:0001008!2.54e-09!45;UBERON:0009569!2.87e-09!113;UBERON:0004876!5.23e-09!20;UBERON:0003064!5.36e-09!37;UBERON:0005177!1.08e-08!107;UBERON:0003887!1.81e-08!21;UBERON:0000058!7.75e-08!26;UBERON:0001225!3.44e-07!13;UBERON:0008987!3.44e-07!13;UBERON:0003104!7.06e-07!238;UBERON:0009142!7.06e-07!238;UBERON:0008947!8.04e-07!38;UBERON:0003258!8.04e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.32e-33;9!UBERON:0001557;1.32e-33;9!UBERON:0004211;1.29e-15;10!UBERON:0009773;1.29e-15;10!UBERON:0001231;1.29e-15;10!UBERON:0004810;1.29e-15;10!UBERON:0002113;1.39e-15;24!UBERON:0011143;1.39e-15;24!UBERON:0005172;6.81e-13;52!UBERON:0005173;6.81e-13;52!UBERON:0000489;1.06e-12;29!UBERON:0006554;3.08e-12;30!UBERON:0001008;3.08e-12;30!UBERON:0000072;1.42e-11;37!UBERON:0006555;2.40e-10;15!UBERON:0004819;2.40e-10;15!UBERON:0001285;2.40e-10;15!UBERON:0007684;2.40e-10;15!UBERON:0006853;4.00e-09;3!UBERON:0007685;4.00e-09;3!UBERON:0004134;4.00e-09;3!UBERON:0000065;4.47e-09;44!UBERON:0002417;2.18e-08;58!UBERON:0000916;2.18e-08;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,6.85e-34,9;UBERON:0005172,4.31e-17,54;UBERON:0005173,4.31e-17,54;UBERON:0004810,9.62e-16,10;UBERON:0001557,1.26e-15,19;UBERON:0002417,3.96e-15,60;UBERON:0000916,3.96e-15,60;UBERON:0002113,2.65e-14,26;UBERON:0003918,2.65e-14,26;UBERON:0011143,2.65e-14,26;UBERON:0005095,2.65e-14,26;UBERON:0007687,2.65e-14,26;UBERON:0008947,5.23e-12,38;UBERON:0003258,5.23e-12,38;UBERON:0000489,8.22e-12,31;UBERON:0005177,6.77e-11,101;UBERON:0004211,1.99e-10,15;UBERON:0009773,1.99e-10,15;UBERON:0001231,1.99e-10,15;UBERON:0001285,1.99e-10,15;UBERON:0007684,1.99e-10,15;UBERON:0004208,1.99e-10,15;UBERON:0006555,9.21e-10,16;UBERON:0004819,9.21e-10,16;UBERON:0001041,9.40e-10,87;UBERON:0009569,1.55e-09,112;UBERON:0000072,1.97e-09,47;UBERON:0006853,3.39e-09,3;UBERON:0007685,3.39e-09,3;UBERON:0004134,3.39e-09,3;UBERON:0000065,5.05e-08,54;UBERON:0004921,1.16e-07,118;UBERON:0006554,2.12e-07,47;UBERON:0001008,3.19e-07,48;UBERON:0004119,8.48e-07,160;UBERON:0000925,8.48e-07,160;UBERON:0006595,8.48e-07,160;UBERON:0001007,9.51e-07,145;UBERON:0001555,9.51e-07,145;UBERON:0007026,9.51e-07,145 | |||
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| ||
|short_description=p@chr19:10688031..10688042,- | |||
}} | }} |
Latest revision as of 03:12, 26 July 2015
Short description: | p@chr19:10688031..10688042, - |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:10688031..10688042, - |
Coexpression cluster: | C2474_mesothelioma_Hep2_clear_Renal_nonsmall_renal_lung |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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kidney tubule cell | 9.62e-16 | 10 |
nephron tubule epithelial cell | 9.62e-16 | 10 |
kidney cell | 7.56e-13 | 17 |
kidney epithelial cell | 7.56e-13 | 17 |
epithelial cell | 6.94e-12 | 253 |
epithelial cell of nephron | 1.99e-10 | 15 |
brush border epithelial cell | 3.39e-09 | 3 |
kidney cortex tubule cell | 3.39e-09 | 3 |
epithelial cell of proximal tubule | 3.39e-09 | 3 |
lung fibroblast | 1.30e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.54e-17 | 106 |
clear cell adenocarcinoma | 5.17e-14 | 2 |
cell type cancer | 5.40e-12 | 143 |
cancer | 1.85e-08 | 235 |
disease of cellular proliferation | 3.42e-08 | 239 |